GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001227-TA|BGIBMGA001227-PA|undefined
         (212 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    25   0.34 
AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B prot...    23   1.8  
DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.          23   2.4  
AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase ...    21   9.6  
AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase ...    21   9.6  

>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like protein
            protein.
          Length = 1156

 Score = 25.4 bits (53), Expect = 0.34
 Identities = 14/53 (26%), Positives = 26/53 (49%), Gaps = 1/53 (1%)

Query: 7    GTSNKKELLDEIVNRNKLG-NKKSHSETSLQQYGENDDVFTIDAGQDPGVLNA 58
            G+S+    L ++ ++ +   N ++HS TS      N +    +AG  PG + A
Sbjct: 986  GSSHPLAALQKLCDKTETHTNNRTHSATSNSSVNANTNNIPTNAGTTPGAILA 1038


>AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B
           protein.
          Length = 351

 Score = 23.0 bits (47), Expect = 1.8
 Identities = 8/20 (40%), Positives = 11/20 (55%)

Query: 125 GDSGTATPTGERGSPLPYNG 144
           G  G + P G  G+PL + G
Sbjct: 220 GSMGVSVPCGTSGNPLEWTG 239


>DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.
          Length = 822

 Score = 22.6 bits (46), Expect = 2.4
 Identities = 22/80 (27%), Positives = 38/80 (47%), Gaps = 8/80 (10%)

Query: 11  KKELLDEIVNR--NKLGNKKSHSETSLQQYGENDDVFTIDAGQDPG----VLNASLTNLQ 64
           KKE+ +EI +   +K     S  + +   Y   DDV  I+ G+ PG     L + L+ ++
Sbjct: 214 KKEVKEEIEDEPDHKWKKNDSSKKKTRYYYRSVDDV--IEKGKRPGAFRTTLGSELSKVK 271

Query: 65  NADDNPNRKRTMSQPGPVSG 84
             D    ++R +S    +SG
Sbjct: 272 VIDMTGPQQRVLSGYHALSG 291



 Score = 20.6 bits (41), Expect = 9.6
 Identities = 8/15 (53%), Positives = 10/15 (66%)

Query: 187 SIRSVETHAPPPTNP 201
           S  S+E +APPP  P
Sbjct: 722 SYLSMENNAPPPPPP 736


>AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase
            protein.
          Length = 1464

 Score = 20.6 bits (41), Expect = 9.6
 Identities = 10/39 (25%), Positives = 18/39 (46%)

Query: 39   GENDDVFTIDAGQDPGVLNASLTNLQNADDNPNRKRTMS 77
            GEN  +F +D      V     T+  N   +  RK++++
Sbjct: 1382 GENKPIFYLDEAFQRRVTQIGSTSSNNPSISAFRKKSLA 1420


>AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase CHS2
            protein.
          Length = 1464

 Score = 20.6 bits (41), Expect = 9.6
 Identities = 10/39 (25%), Positives = 18/39 (46%)

Query: 39   GENDDVFTIDAGQDPGVLNASLTNLQNADDNPNRKRTMS 77
            GEN  +F +D      V     T+  N   +  RK++++
Sbjct: 1382 GENKPIFYLDEAFQRRVTQIGSTSSNNPSISAFRKKSLA 1420


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.303    0.125    0.346 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 52,568
Number of Sequences: 317
Number of extensions: 2300
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of query: 212
length of database: 114,650
effective HSP length: 54
effective length of query: 158
effective length of database: 97,532
effective search space: 15410056
effective search space used: 15410056
T: 11
A: 40
X1: 16 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.0 bits)
S2: 41 (20.6 bits)