Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001227-TA|BGIBMGA001227-PA|undefined
(212 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC6F12.16c |mtr4||ATP-dependent RNA helicase, TRAMP complex su... 29 0.51
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce... 28 1.2
SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr 1|||... 27 1.6
SPAC25B8.19c ||SPAC683.01c|transcription factor, zf-fungal binuc... 27 1.6
SPAC31F12.01 |zds1|SPAC637.14, mug88|zds family protein Zds1|Sch... 27 2.1
SPCC1020.04c |rpb6|rpo15|DNA-directed RNA polymerase I, II and I... 27 2.1
SPBP8B7.26 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 27 2.7
SPAC29B12.07 |sec16||multidomain vesicle coat component Sec16|Sc... 26 3.6
SPAC20G8.01 |cdc17||ATP-dependent DNA ligase Cdc17|Schizosacchar... 26 4.7
SPAC13A11.01c |rga8|SPAC2F7.18c|GTPase activating protein Rga8 |... 26 4.7
SPAC23C4.19 |spt5||transcription elongation factor Spt5|Schizosa... 26 4.7
SPAC6C3.07 |mug68||sequence orphan|Schizosaccharomyces pombe|chr... 25 6.3
SPBC428.18 |cdt1||replication licensing factor Cdt1|Schizosaccha... 25 8.3
SPAC9G1.10c |||inositol polyphosphate phosphatase |Schizosacchar... 25 8.3
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||... 25 8.3
SPAC17G6.09 |sec62||ER protein translocation subcomplex subunit ... 25 8.3
>SPAC6F12.16c |mtr4||ATP-dependent RNA helicase, TRAMP complex
subunit Mtr4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1117
Score = 29.1 bits (62), Expect = 0.51
Identities = 14/39 (35%), Positives = 21/39 (53%)
Query: 39 GENDDVFTIDAGQDPGVLNASLTNLQNADDNPNRKRTMS 77
GE DD F + G+ P L N QN+ ++ KRT++
Sbjct: 4 GELDDAFGVFEGKVPKSLKEESKNSQNSQNSQKIKRTLT 42
>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1036
Score = 27.9 bits (59), Expect = 1.2
Identities = 33/169 (19%), Positives = 62/169 (36%), Gaps = 4/169 (2%)
Query: 26 NKKSHSETSLQQYGENDDVFTIDAGQDPGVLNASLTNLQNADDNPNRKRTMSQPGPVSGS 85
N S S +SL T + N++ + + + T S S +
Sbjct: 66 NTSSASSSSLTSSSAASSSLTSSSSLASSSTNSTTSASPTSSSLTSSSATSSSLASSSTT 125
Query: 86 LLTXXXXXXXXXXPQKNVMYAPDLERSESTSDRLRSSNGGDSGTATPTGE-RGSPLPYNG 144
+ + + + L S +TS L SS+ + +ATPT S L
Sbjct: 126 SSSLASSSITSSSLASSSITSSSLASSSTTSSSLASSSTNSTTSATPTSSATSSSLSSTA 185
Query: 145 LNNNSKNGDI--KSLNSYRLYIPT-NDLKGSATPRKRSVATMDAQSIRS 190
+N++ + + SLNS T + L +A + +++ + S+ S
Sbjct: 186 ASNSATSSSLASSSLNSTTSATATSSSLSSTAASNSATSSSLASSSLNS 234
>SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr
1|||Manual
Length = 710
Score = 27.5 bits (58), Expect = 1.6
Identities = 24/89 (26%), Positives = 38/89 (42%), Gaps = 8/89 (8%)
Query: 120 RSSNGGDSGTATPTGERGSPLPYNGLNNNSKNGDIKSLNSYRLYIPTNDLKGSATPRKRS 179
++S+ S TPTGE P P N N I++ ++ + GS T K
Sbjct: 280 KASSSVKSIPTTPTGESLWPFPSENANKTQIN--IENATCSKM----TWIMGSPTKEKSQ 333
Query: 180 VATMDAQSIRSVETHAPPPTNPEDNKKQT 208
++ + + + H P NP DNK Q+
Sbjct: 334 WGSVSTTGVSNQQNH-PAAWNP-DNKPQS 360
>SPAC25B8.19c ||SPAC683.01c|transcription factor, zf-fungal
binuclear cluster type |Schizosaccharomyces pombe|chr
1|||Manual
Length = 522
Score = 27.5 bits (58), Expect = 1.6
Identities = 18/62 (29%), Positives = 29/62 (46%), Gaps = 2/62 (3%)
Query: 99 PQKNVMYAPDLERSESTSDRLRSSNGGDSGTATPTGERGSPLPYNGLNNN--SKNGDIKS 156
P N + + ++E+ S+ S + G A + PLP + NN+ S+N I S
Sbjct: 334 PASNTLNHANGNQAENASESSTSQSNDSQGPANTSYPVSVPLPNDAENNHTLSRNPYIPS 393
Query: 157 LN 158
LN
Sbjct: 394 LN 395
>SPAC31F12.01 |zds1|SPAC637.14, mug88|zds family protein
Zds1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 938
Score = 27.1 bits (57), Expect = 2.1
Identities = 19/59 (32%), Positives = 26/59 (44%), Gaps = 5/59 (8%)
Query: 135 ERGSPLPYNGLNNNSKNGDIKSLNSYRLYIPTNDLKGSATPRKRSVATMDAQSIRSVET 193
ER P P G N SKN +KS +P + S+T K S ++ S S +T
Sbjct: 631 ERHIPTPETGPNKPSKNNILKSTQ-----VPVTPKQKSSTANKGSTSSPSPPSSESKKT 684
>SPCC1020.04c |rpb6|rpo15|DNA-directed RNA polymerase I, II and
III subunit Rpb6|Schizosaccharomyces pombe|chr
3|||Manual
Length = 142
Score = 27.1 bits (57), Expect = 2.1
Identities = 14/49 (28%), Positives = 25/49 (51%), Gaps = 4/49 (8%)
Query: 40 ENDDVFTIDAGQDPGVLNASLTNLQNADDNPNRKRTMSQPGPVSGSLLT 88
E D+ F G D V+ + L+ D+N ++ +S PG S +++T
Sbjct: 5 EEDEAF----GMDGAVMEEEVDELEMIDENGQSQQGVSHPGEPSTTVIT 49
>SPBP8B7.26 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 262
Score = 26.6 bits (56), Expect = 2.7
Identities = 22/99 (22%), Positives = 37/99 (37%), Gaps = 7/99 (7%)
Query: 107 PDLERSESTSDRLRSSNGGDSGTATPTGERGSPLPYN-----GLNNNSKNGDIKSLNSYR 161
P S S S +S+ + + PT +PLP N++ +G + + +
Sbjct: 155 PSYSSSGSYSQTYQSNANYTASSPLPTASANAPLPVPPPRRVSQNSSYASGSVPAATAAS 214
Query: 162 LYIPTNDLKGSATPRKRSVATMDAQSIRSVE--THAPPP 198
P A P+ R +A + + V T PPP
Sbjct: 215 TASPVKKPPPPAPPKPRRLAARTSSNSSGVSSPTSVPPP 253
>SPAC29B12.07 |sec16||multidomain vesicle coat component
Sec16|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1995
Score = 26.2 bits (55), Expect = 3.6
Identities = 14/42 (33%), Positives = 24/42 (57%), Gaps = 4/42 (9%)
Query: 9 SNKKELLDEIVNRNKLGNKKSHSETSLQQYGENDDVFTIDAG 50
SN + + EI +N +G+K +H+E + ND++ I AG
Sbjct: 96 SNSLDNVQEINPQNTIGDKSAHTE----EESSNDNLVKITAG 133
>SPAC20G8.01 |cdc17||ATP-dependent DNA ligase
Cdc17|Schizosaccharomyces pombe|chr 1|||Manual
Length = 768
Score = 25.8 bits (54), Expect = 4.7
Identities = 14/42 (33%), Positives = 20/42 (47%)
Query: 109 LERSESTSDRLRSSNGGDSGTATPTGERGSPLPYNGLNNNSK 150
L S S+SD + S+N + T P + PL N N+ K
Sbjct: 103 LGSSSSSSDAVSSNNDSGASTPIPLPIKEPPLESNARNDKLK 144
>SPAC13A11.01c |rga8|SPAC2F7.18c|GTPase activating protein Rga8
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 777
Score = 25.8 bits (54), Expect = 4.7
Identities = 14/42 (33%), Positives = 21/42 (50%)
Query: 153 DIKSLNSYRLYIPTNDLKGSATPRKRSVATMDAQSIRSVETH 194
+++ LNS + + SATPR V+ SI SV +H
Sbjct: 652 ELRKLNSSKRVSDRVLYQSSATPRSTDVSPTRPDSISSVRSH 693
>SPAC23C4.19 |spt5||transcription elongation factor
Spt5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 990
Score = 25.8 bits (54), Expect = 4.7
Identities = 14/48 (29%), Positives = 21/48 (43%)
Query: 106 APDLERSESTSDRLRSSNGGDSGTATPTGERGSPLPYNGLNNNSKNGD 153
A + +E S + S N + T GE G+ + +NNN K D
Sbjct: 49 AAKITTNEKQSSPVDSHNESPNDTTINKGEDGNENEVDNVNNNDKKED 96
>SPAC6C3.07 |mug68||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 515
Score = 25.4 bits (53), Expect = 6.3
Identities = 12/37 (32%), Positives = 19/37 (51%)
Query: 41 NDDVFTIDAGQDPGVLNASLTNLQNADDNPNRKRTMS 77
ND T A + + N +NL+ ++P KRT+S
Sbjct: 309 NDGPITKCARETINIKNLKTSNLERNQNSPKNKRTVS 345
>SPBC428.18 |cdt1||replication licensing factor
Cdt1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 444
Score = 25.0 bits (52), Expect = 8.3
Identities = 14/35 (40%), Positives = 17/35 (48%)
Query: 171 GSATPRKRSVATMDAQSIRSVETHAPPPTNPEDNK 205
GS T SV + S RS PP NPED++
Sbjct: 26 GSQTKLNFSVRKTRSSSKRSNAAIIEPPKNPEDSQ 60
>SPAC9G1.10c |||inositol polyphosphate phosphatase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1191
Score = 25.0 bits (52), Expect = 8.3
Identities = 19/94 (20%), Positives = 39/94 (41%), Gaps = 1/94 (1%)
Query: 108 DLERSESTSDRLRSSNGGDSGTATPTGERGSPLPYNGLNNNSKNGDIKSLNSYRLYIPTN 167
DL + + + R+ G +GT+ P + P+P +++ S + +
Sbjct: 35 DLTNLDEKTAKRRTVKGCKNGTSEPNVFKARPIPPPRQVSSTIGSSTGRKVSGSIQRLAS 94
Query: 168 DLKGSATPRKRSVATMDAQSIRSVETHAPPPTNP 201
+ K + P V+ +D S E+H P++P
Sbjct: 95 NFKNPSNPH-ADVSKIDRLPSDSSESHVATPSSP 127
>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 3971
Score = 25.0 bits (52), Expect = 8.3
Identities = 18/52 (34%), Positives = 24/52 (46%), Gaps = 7/52 (13%)
Query: 105 YAPDLERSESTSDRLRSSNGGDSGTATPTGERGSPLPYNGLNNNSKNGDIKS 156
YA + S S + L SS+GG S +A TG L S+NG + S
Sbjct: 3500 YASSIVSSVSLNSSLLSSSGGFSSSAFSTGSSSFSL-------TSENGSVSS 3544
>SPAC17G6.09 |sec62||ER protein translocation subcomplex subunit
Sec62 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 273
Score = 25.0 bits (52), Expect = 8.3
Identities = 14/43 (32%), Positives = 22/43 (51%)
Query: 147 NNSKNGDIKSLNSYRLYIPTNDLKGSATPRKRSVATMDAQSIR 189
+NSK+ K+ S +L SATP K S +T +++R
Sbjct: 220 HNSKSEVKKTRKSKKLSKKATSPAASATPEKSSTSTTSLKNLR 262
Database: spombe
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.303 0.125 0.346
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,046,674
Number of Sequences: 5004
Number of extensions: 44765
Number of successful extensions: 95
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 87
Number of HSP's gapped (non-prelim): 16
length of query: 212
length of database: 2,362,478
effective HSP length: 70
effective length of query: 142
effective length of database: 2,012,198
effective search space: 285732116
effective search space used: 285732116
T: 11
A: 40
X1: 16 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 43 (21.8 bits)
S2: 52 (25.0 bits)
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