GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001226-TA|BGIBMGA001226-PA|IPR005829|Sugar transporter
superfamily, IPR011701|Major facilitator superfamily MFS_1
         (846 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY884062-1|AAX84203.1|  712|Tribolium castaneum laccase 2B protein.    26   0.93 
DQ855493-1|ABH88180.1|  127|Tribolium castaneum chemosensory pro...    25   2.8  
U09586-3|AAC47272.1|  470|Tribolium castaneum integrase protein.       24   3.8  

>AY884062-1|AAX84203.1|  712|Tribolium castaneum laccase 2B protein.
          Length = 712

 Score = 26.2 bits (55), Expect = 0.93
 Identities = 11/22 (50%), Positives = 14/22 (63%)

Query: 1   MCTHQSDGDINVVFDSVLNQEV 22
           MCTHQ D  +N + + VL  EV
Sbjct: 567 MCTHQVDIPLNAIVEVVLVDEV 588


>DQ855493-1|ABH88180.1|  127|Tribolium castaneum chemosensory
           protein 7 protein.
          Length = 127

 Score = 24.6 bits (51), Expect = 2.8
 Identities = 15/46 (32%), Positives = 20/46 (43%)

Query: 93  NRYANSTDNVGVDLSPNAEDVCPVYLFDRSTIIPCDNYVHERTNTV 138
           N+Y N  DNV VD   N + V   Y+       PC +   E   T+
Sbjct: 21  NKYTNKYDNVDVDKILNNDRVLTNYIKCLMDEGPCTSEGRELKKTL 66


>U09586-3|AAC47272.1|  470|Tribolium castaneum integrase protein.
          Length = 470

 Score = 24.2 bits (50), Expect = 3.8
 Identities = 14/37 (37%), Positives = 19/37 (51%), Gaps = 2/37 (5%)

Query: 97  NSTDNVGVDLSPNAEDVCPVYLFDRSTIIPCDNYVHE 133
           N T+NV V  S N+ DVC       S +I   +Y H+
Sbjct: 104 NFTNNVLVHRSQNSNDVC--LAIPESLVIKLVDYHHQ 138


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.318    0.133    0.399 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 191,115
Number of Sequences: 317
Number of extensions: 8345
Number of successful extensions: 15
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 13
Number of HSP's gapped (non-prelim): 3
length of query: 846
length of database: 114,650
effective HSP length: 63
effective length of query: 783
effective length of database: 94,679
effective search space: 74133657
effective search space used: 74133657
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 47 (23.0 bits)