GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001226-TA|BGIBMGA001226-PA|IPR005829|Sugar transporter
superfamily, IPR011701|Major facilitator superfamily MFS_1
         (846 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    24   5.9  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              23   7.8  

>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 23.8 bits (49), Expect = 5.9
 Identities = 11/22 (50%), Positives = 15/22 (68%), Gaps = 2/22 (9%)

Query: 672  EHASRGL--VLHPKILPCVLKS 691
            EH + GL   LH + LPCVL++
Sbjct: 1089 EHGAAGLRLCLHHRDLPCVLRA 1110


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 23.4 bits (48), Expect = 7.8
 Identities = 8/21 (38%), Positives = 15/21 (71%)

Query: 656 IKRPEDIEDLFQVWFDEHASR 676
           I  P+DIE++F+  +  HA++
Sbjct: 652 IPEPQDIENIFKYGYVSHANQ 672


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.318    0.133    0.399 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 235,853
Number of Sequences: 429
Number of extensions: 10210
Number of successful extensions: 18
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 17
Number of HSP's gapped (non-prelim): 2
length of query: 846
length of database: 140,377
effective HSP length: 64
effective length of query: 782
effective length of database: 112,921
effective search space: 88304222
effective search space used: 88304222
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 48 (23.4 bits)