GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001225-TA|BGIBMGA001225-PA|undefined
         (94 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U80445-2|AAB37795.2| 1029|Caenorhabditis elegans Hypothetical pr...    30   0.27 
U20861-11|AAA62291.2| 1714|Caenorhabditis elegans Hypothetical p...    29   0.48 
Z81118-6|CAI46578.1| 1203|Caenorhabditis elegans Hypothetical pr...    28   1.1  
Z81118-5|CAB03330.2| 1205|Caenorhabditis elegans Hypothetical pr...    28   1.1  
AY032860-1|AAK52089.1| 1205|Caenorhabditis elegans EEA1 protein.       28   1.1  
Z83236-6|CAB05784.1|  315|Caenorhabditis elegans Hypothetical pr...    27   1.5  
U13875-11|AAA21158.1| 1193|Caenorhabditis elegans Rna polymerase...    27   1.5  
U10333-1|AAA50224.1|  859|Caenorhabditis elegans RNA polymerase ...    27   1.5  
AF039716-9|AAB96734.2|  548|Caenorhabditis elegans Hypothetical ...    27   1.5  
Z32683-1|CAA83621.1|  812|Caenorhabditis elegans Hypothetical pr...    27   2.5  
AL023815-4|CAF31480.1|  511|Caenorhabditis elegans Hypothetical ...    27   2.5  
AL023815-3|CAD92384.1|  503|Caenorhabditis elegans Hypothetical ...    27   2.5  
AL023815-1|CAA19429.1|  538|Caenorhabditis elegans Hypothetical ...    27   2.5  
U58751-3|AAN84880.1|  667|Caenorhabditis elegans Pctaire class c...    26   3.4  
U58751-2|AAL00852.1|  700|Caenorhabditis elegans Pctaire class c...    26   3.4  
Z83238-6|CAB05800.1|  943|Caenorhabditis elegans Hypothetical pr...    26   4.4  
Z50176-2|CAA90539.1| 1115|Caenorhabditis elegans Hypothetical pr...    26   4.4  
Z82269-3|CAB05207.2| 1319|Caenorhabditis elegans Hypothetical pr...    25   5.9  
Z82269-2|CAJ76945.1| 1129|Caenorhabditis elegans Hypothetical pr...    25   5.9  
U21322-3|AAA62541.1| 1425|Caenorhabditis elegans Hypothetical pr...    25   5.9  
DQ178637-1|ABD75716.1|  580|Caenorhabditis elegans F59G1.4 protein.    25   5.9  
AL032640-5|CAA21644.1|  475|Caenorhabditis elegans Hypothetical ...    25   5.9  
AC024824-1|AAK85503.1|  679|Caenorhabditis elegans Hypothetical ...    25   5.9  
Z73970-3|CAA98242.2|  773|Caenorhabditis elegans Hypothetical pr...    25   7.7  
AL132948-47|CAD31812.3|  801|Caenorhabditis elegans Hypothetical...    25   7.7  
AL110485-5|CAB60375.1| 1002|Caenorhabditis elegans Hypothetical ...    25   7.7  
AF067937-3|AAF99913.2|  559|Caenorhabditis elegans Hypothetical ...    25   7.7  
AB031233-1|BAA92262.1|  605|Caenorhabditis elegans kinesin like ...    25   7.7  

>U80445-2|AAB37795.2| 1029|Caenorhabditis elegans Hypothetical
           protein C50F2.2 protein.
          Length = 1029

 Score = 29.9 bits (64), Expect = 0.27
 Identities = 15/61 (24%), Positives = 31/61 (50%), Gaps = 2/61 (3%)

Query: 31  RGMDSDTDVEYCPSDDEETEINIHQELLKKPIREQITWN--THYLQPEREDEKTLIKKAD 88
           R  D + D+  C  +DEE   N+  +       +++ WN  T Y + E E+ + ++++ D
Sbjct: 864 RKEDFNDDLSGCLEEDEEDTENLLPQAKDDSFIDELDWNYGTDYEEEEVEEAEVVVEEKD 923

Query: 89  D 89
           +
Sbjct: 924 N 924


>U20861-11|AAA62291.2| 1714|Caenorhabditis elegans Hypothetical
            protein C28H8.3 protein.
          Length = 1714

 Score = 29.1 bits (62), Expect = 0.48
 Identities = 14/55 (25%), Positives = 30/55 (54%), Gaps = 2/55 (3%)

Query: 39   VEYCPSDDEETEINIHQELLKKPIREQITWNTHYLQPEREDEKTLIKKADDLTER 93
            +E+  SD+++  IN   ++LK+P+  Q+++       E+     ++   DDL E+
Sbjct: 1089 MEWLSSDEQK--INSILKILKEPVNTQLSYRARPFNKEKIANDYIVTLVDDLKEK 1141


>Z81118-6|CAI46578.1| 1203|Caenorhabditis elegans Hypothetical protein
            T10G3.5b protein.
          Length = 1203

 Score = 27.9 bits (59), Expect = 1.1
 Identities = 14/50 (28%), Positives = 26/50 (52%)

Query: 1    MEENEKIKGILPRRSIKEPMLSNRKCLLIDRGMDSDTDVEYCPSDDEETE 50
            ++E +K+K         E M    K +LI+R + S++D+EY     +E +
Sbjct: 1060 LDELQKLKEEFDELKKAETMWQAEKDMLIERCLGSESDIEYEKERSQENK 1109


>Z81118-5|CAB03330.2| 1205|Caenorhabditis elegans Hypothetical protein
            T10G3.5a protein.
          Length = 1205

 Score = 27.9 bits (59), Expect = 1.1
 Identities = 14/50 (28%), Positives = 26/50 (52%)

Query: 1    MEENEKIKGILPRRSIKEPMLSNRKCLLIDRGMDSDTDVEYCPSDDEETE 50
            ++E +K+K         E M    K +LI+R + S++D+EY     +E +
Sbjct: 1062 LDELQKLKEEFDELKKAETMWQAEKDMLIERCLGSESDIEYEKERSQENK 1111


>AY032860-1|AAK52089.1| 1205|Caenorhabditis elegans EEA1 protein.
          Length = 1205

 Score = 27.9 bits (59), Expect = 1.1
 Identities = 14/50 (28%), Positives = 26/50 (52%)

Query: 1    MEENEKIKGILPRRSIKEPMLSNRKCLLIDRGMDSDTDVEYCPSDDEETE 50
            ++E +K+K         E M    K +LI+R + S++D+EY     +E +
Sbjct: 1062 LDELQKLKEEFDELKKAETMWQAEKDMLIERCLGSESDIEYEKERSQENK 1111


>Z83236-6|CAB05784.1|  315|Caenorhabditis elegans Hypothetical
           protein K10H10.6 protein.
          Length = 315

 Score = 27.5 bits (58), Expect = 1.5
 Identities = 20/68 (29%), Positives = 32/68 (47%), Gaps = 5/68 (7%)

Query: 10  ILPRRSIKEPMLSNRKCLLIDRGMDSDTDVEYCPSDDEETEINIHQELLKK--PIREQIT 67
           +L  R+++      RK  ++++  D+  D+ YC   D +T     +E LKK  PI   I 
Sbjct: 55  VLINRNLRASETQKRK--ILEKKPDAKVDIIYCDLSDLKTARKAGEEYLKKKWPIHGLIL 112

Query: 68  WNTHYLQP 75
            N    QP
Sbjct: 113 -NAGVFQP 119


>U13875-11|AAA21158.1| 1193|Caenorhabditis elegans Rna polymerase ii
           (b) subunit protein2 protein.
          Length = 1193

 Score = 27.5 bits (58), Expect = 1.5
 Identities = 17/53 (32%), Positives = 29/53 (54%), Gaps = 3/53 (5%)

Query: 29  IDRGMDSDTDVEYCPSDDEETEI-NIHQELLKKPIREQITWNTHYLQPEREDE 80
           IDRG+     V Y    D E  + N ++EL++KP RE+ +   H L  + +++
Sbjct: 807 IDRGLFRS--VFYRSYRDNEANLDNANEELIEKPTREKCSGMRHSLYDKLDED 857


>U10333-1|AAA50224.1|  859|Caenorhabditis elegans RNA polymerase II,
           second largestsubunit protein.
          Length = 859

 Score = 27.5 bits (58), Expect = 1.5
 Identities = 17/53 (32%), Positives = 29/53 (54%), Gaps = 3/53 (5%)

Query: 29  IDRGMDSDTDVEYCPSDDEETEI-NIHQELLKKPIREQITWNTHYLQPEREDE 80
           IDRG+     V Y    D E  + N ++EL++KP RE+ +   H L  + +++
Sbjct: 608 IDRGLFRS--VFYRSYRDNEANLDNANEELIEKPTREKCSGMRHSLYDKLDED 658


>AF039716-9|AAB96734.2|  548|Caenorhabditis elegans Hypothetical
           protein W03G9.7 protein.
          Length = 548

 Score = 27.5 bits (58), Expect = 1.5
 Identities = 11/44 (25%), Positives = 28/44 (63%), Gaps = 1/44 (2%)

Query: 44  SDDEETEI-NIHQELLKKPIREQITWNTHYLQPEREDEKTLIKK 86
           ++ E+T++ NI Q  ++  +++Q  W+  YL+ + E E  ++++
Sbjct: 128 TEREKTDLKNIEQPSVRDYLKQQGQWDDRYLKEKAEYEDAMVRQ 171


>Z32683-1|CAA83621.1|  812|Caenorhabditis elegans Hypothetical
           protein R07E5.1 protein.
          Length = 812

 Score = 26.6 bits (56), Expect = 2.5
 Identities = 19/61 (31%), Positives = 28/61 (45%), Gaps = 1/61 (1%)

Query: 34  DSD-TDVEYCPSDDEETEINIHQELLKKPIREQITWNTHYLQPEREDEKTLIKKADDLTE 92
           D D  D +   S+DEE E    QE+LKK   +         + E E+ K + K+  +L  
Sbjct: 651 DGDGADSDESNSEDEEAEEKERQEILKKREEDLKRRREIVEKKEEENRKRVEKELKELEN 710

Query: 93  R 93
           R
Sbjct: 711 R 711


>AL023815-4|CAF31480.1|  511|Caenorhabditis elegans Hypothetical
           protein H28O16.1d protein.
          Length = 511

 Score = 26.6 bits (56), Expect = 2.5
 Identities = 10/22 (45%), Positives = 16/22 (72%)

Query: 6   KIKGILPRRSIKEPMLSNRKCL 27
           K  GI+PR S++EPM++  K +
Sbjct: 133 KAPGIIPRLSVREPMVTGVKAV 154


>AL023815-3|CAD92384.1|  503|Caenorhabditis elegans Hypothetical
           protein H28O16.1c protein.
          Length = 503

 Score = 26.6 bits (56), Expect = 2.5
 Identities = 10/22 (45%), Positives = 16/22 (72%)

Query: 6   KIKGILPRRSIKEPMLSNRKCL 27
           K  GI+PR S++EPM++  K +
Sbjct: 125 KAPGIIPRLSVREPMVTGVKAV 146


>AL023815-1|CAA19429.1|  538|Caenorhabditis elegans Hypothetical
           protein H28O16.1a protein.
          Length = 538

 Score = 26.6 bits (56), Expect = 2.5
 Identities = 10/22 (45%), Positives = 16/22 (72%)

Query: 6   KIKGILPRRSIKEPMLSNRKCL 27
           K  GI+PR S++EPM++  K +
Sbjct: 160 KAPGIIPRLSVREPMVTGVKAV 181


>U58751-3|AAN84880.1|  667|Caenorhabditis elegans Pctaire class cell
           cycle kinaseprotein 1, isoform c protein.
          Length = 667

 Score = 26.2 bits (55), Expect = 3.4
 Identities = 18/57 (31%), Positives = 25/57 (43%), Gaps = 2/57 (3%)

Query: 31  RGMDSDTDVEYCPSDDEETEINIHQELLKKPIREQITW-NTHYLQPEREDEKTLIKK 86
           R +D D DVEY   DDE+  +   +E+  + I    T   T    P     K+  KK
Sbjct: 116 RNLDED-DVEYEDEDDEDDIVVEEEEITPEDIEHSPTGVTTQTTPPSNNTSKSKKKK 171


>U58751-2|AAL00852.1|  700|Caenorhabditis elegans Pctaire class cell
           cycle kinaseprotein 1, isoform b protein.
          Length = 700

 Score = 26.2 bits (55), Expect = 3.4
 Identities = 18/57 (31%), Positives = 25/57 (43%), Gaps = 2/57 (3%)

Query: 31  RGMDSDTDVEYCPSDDEETEINIHQELLKKPIREQITW-NTHYLQPEREDEKTLIKK 86
           R +D D DVEY   DDE+  +   +E+  + I    T   T    P     K+  KK
Sbjct: 149 RNLDED-DVEYEDEDDEDDIVVEEEEITPEDIEHSPTGVTTQTTPPSNNTSKSKKKK 204


>Z83238-6|CAB05800.1|  943|Caenorhabditis elegans Hypothetical
          protein T08G3.7 protein.
          Length = 943

 Score = 25.8 bits (54), Expect = 4.4
 Identities = 14/49 (28%), Positives = 24/49 (48%), Gaps = 2/49 (4%)

Query: 43 PSDDEETEINIHQELLKKPIREQITWNTHYLQPEREDEKTLIKKADDLT 91
          PSD   T +N++ +     ++      T  +Q  + D +TL+   DDLT
Sbjct: 2  PSDQLNTVLNVNVKAASSELKRMHQEYTKLIQLSKNDTQTLLN--DDLT 48


>Z50176-2|CAA90539.1| 1115|Caenorhabditis elegans Hypothetical
           protein C09G1.2 protein.
          Length = 1115

 Score = 25.8 bits (54), Expect = 4.4
 Identities = 12/57 (21%), Positives = 31/57 (54%), Gaps = 2/57 (3%)

Query: 1   MEENEKIKGILPRRSIKEPMLSNRKCLLIDRGMDSDTDVEYCPSDDEETEINIHQEL 57
           +EE + +  +  RR     + + +K + ID+ +    D+E    D+++ +I++H ++
Sbjct: 645 LEEQDPL--LSERRKTLATIFNQKKPVQIDQNLQCSFDLEDGEIDEKQCQISLHSQV 699


>Z82269-3|CAB05207.2| 1319|Caenorhabditis elegans Hypothetical
           protein F52G2.2a protein.
          Length = 1319

 Score = 25.4 bits (53), Expect = 5.9
 Identities = 15/65 (23%), Positives = 28/65 (43%)

Query: 30  DRGMDSDTDVEYCPSDDEETEINIHQELLKKPIREQITWNTHYLQPEREDEKTLIKKADD 89
           DR       ++Y    D    I+IH +   +P+  +    T     +R++   ++KK D 
Sbjct: 871 DRQYQEKPPMQYQSYHDPADTISIHSQDNHRPMETRSNAGTSVSSVDRKEVGVVMKKVDK 930

Query: 90  LTERV 94
            T+ V
Sbjct: 931 NTQIV 935


>Z82269-2|CAJ76945.1| 1129|Caenorhabditis elegans Hypothetical
           protein F52G2.2b protein.
          Length = 1129

 Score = 25.4 bits (53), Expect = 5.9
 Identities = 15/65 (23%), Positives = 28/65 (43%)

Query: 30  DRGMDSDTDVEYCPSDDEETEINIHQELLKKPIREQITWNTHYLQPEREDEKTLIKKADD 89
           DR       ++Y    D    I+IH +   +P+  +    T     +R++   ++KK D 
Sbjct: 681 DRQYQEKPPMQYQSYHDPADTISIHSQDNHRPMETRSNAGTSVSSVDRKEVGVVMKKVDK 740

Query: 90  LTERV 94
            T+ V
Sbjct: 741 NTQIV 745


>U21322-3|AAA62541.1| 1425|Caenorhabditis elegans Hypothetical
           protein K10D2.3 protein.
          Length = 1425

 Score = 25.4 bits (53), Expect = 5.9
 Identities = 14/64 (21%), Positives = 31/64 (48%)

Query: 5   EKIKGILPRRSIKEPMLSNRKCLLIDRGMDSDTDVEYCPSDDEETEINIHQELLKKPIRE 64
           E I  +     +K   ++  +C LI+   +S  +     S  +ETE  +   +++KP+++
Sbjct: 851 EPITKLSNEAPVKIKNVAQPQCDLIEAPQESLMNESMMESSFDETESPMKTPIVQKPVKQ 910

Query: 65  QITW 68
             T+
Sbjct: 911 NATF 914


>DQ178637-1|ABD75716.1|  580|Caenorhabditis elegans F59G1.4 protein.
          Length = 580

 Score = 25.4 bits (53), Expect = 5.9
 Identities = 16/43 (37%), Positives = 25/43 (58%), Gaps = 1/43 (2%)

Query: 24  RKCLLIDRGMDSDTDVEYCPSDDEETEINIHQELLKKPIREQI 66
           R+ L+I+ G+ SD  VEY  + DE T     +E  KK  +E++
Sbjct: 417 RRPLIINIGL-SDGAVEYKKAQDEITRKKEDEENKKKKEKEKV 458


>AL032640-5|CAA21644.1|  475|Caenorhabditis elegans Hypothetical
           protein Y43F8A.5 protein.
          Length = 475

 Score = 25.4 bits (53), Expect = 5.9
 Identities = 15/29 (51%), Positives = 19/29 (65%), Gaps = 3/29 (10%)

Query: 69  NTHYLQ-PER--EDEKTLIKKADDLTERV 94
           N  YL+ PE   ED  T IKK+DD++E V
Sbjct: 420 NMRYLEAPELNPEDLTTSIKKSDDISENV 448


>AC024824-1|AAK85503.1|  679|Caenorhabditis elegans Hypothetical
           protein Y55B1BR.3 protein.
          Length = 679

 Score = 25.4 bits (53), Expect = 5.9
 Identities = 18/85 (21%), Positives = 38/85 (44%), Gaps = 2/85 (2%)

Query: 2   EENEKIKGILPRRSIKEPMLSNRKCLLIDRGMDSDTDVEYCPSDDEETEINIHQELLKKP 61
           EE E+++   P++  K P  S++K   ++   + + DVE  P        +  +   K+ 
Sbjct: 507 EEEEEVEES-PKKKGKTPRKSSKKSAAVEESDNEEEDVEESPKKRTSPRKSSKKRAAKEE 565

Query: 62  IREQITWNTHYLQPE-REDEKTLIK 85
             E        ++   ++++KTL K
Sbjct: 566 SEESSDNEVEEVEDSPKKNDKTLRK 590


>Z73970-3|CAA98242.2|  773|Caenorhabditis elegans Hypothetical
           protein C29A12.3a protein.
          Length = 773

 Score = 25.0 bits (52), Expect = 7.7
 Identities = 16/64 (25%), Positives = 33/64 (51%), Gaps = 5/64 (7%)

Query: 29  IDRGMDSDTDVEYCPSDDEETEINI----HQELLKKPIREQITWNT-HYLQPEREDEKTL 83
           I++    D D E+   +DEE E+N+         + P++E+I   T   + P++ ++K  
Sbjct: 627 IEKADAVDEDDEFEEKEDEEEELNMTNVSEGSSKENPVKEEIKKETPKSVSPKKFEKKPP 686

Query: 84  IKKA 87
           +K +
Sbjct: 687 VKSS 690


>AL132948-47|CAD31812.3|  801|Caenorhabditis elegans Hypothetical
           protein Y39B6A.14 protein.
          Length = 801

 Score = 25.0 bits (52), Expect = 7.7
 Identities = 13/38 (34%), Positives = 21/38 (55%)

Query: 28  LIDRGMDSDTDVEYCPSDDEETEINIHQELLKKPIREQ 65
           L + G DS+ DV    +DD +T+ +  + + KK   EQ
Sbjct: 541 LEEDGTDSELDVSDVDTDDVDTDDDADEPVAKKKRVEQ 578


>AL110485-5|CAB60375.1| 1002|Caenorhabditis elegans Hypothetical
           protein Y46G5A.6 protein.
          Length = 1002

 Score = 25.0 bits (52), Expect = 7.7
 Identities = 11/20 (55%), Positives = 12/20 (60%)

Query: 74  QPEREDEKTLIKKADDLTER 93
           Q +RED K  IK  DD  ER
Sbjct: 628 QDQREDRKERIKSPDDRAER 647


>AF067937-3|AAF99913.2|  559|Caenorhabditis elegans Hypothetical
           protein F22F7.3 protein.
          Length = 559

 Score = 25.0 bits (52), Expect = 7.7
 Identities = 13/40 (32%), Positives = 22/40 (55%)

Query: 51  INIHQELLKKPIREQITWNTHYLQPEREDEKTLIKKADDL 90
           INIH   +KK + +  T  T +L  +R D   ++ +A+ L
Sbjct: 108 INIHGSHIKKKVGKVATLTTEHLLNDRCDYSLVLIQANTL 147


>AB031233-1|BAA92262.1|  605|Caenorhabditis elegans kinesin like
           protein protein.
          Length = 605

 Score = 25.0 bits (52), Expect = 7.7
 Identities = 15/38 (39%), Positives = 21/38 (55%), Gaps = 2/38 (5%)

Query: 47  EETEINIHQELLKKPIREQITWNTHYLQPEREDEKTLI 84
           E T IN     LKK IR Q+T  +H   P R+ + T++
Sbjct: 518 ELTNINQSLSTLKKCIRRQMTKMSHV--PYRDSKLTMV 553


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.312    0.133    0.379 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,677,648
Number of Sequences: 27539
Number of extensions: 116958
Number of successful extensions: 288
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 265
Number of HSP's gapped (non-prelim): 33
length of query: 94
length of database: 12,573,161
effective HSP length: 69
effective length of query: 25
effective length of database: 10,672,970
effective search space: 266824250
effective search space used: 266824250
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)
S2: 52 (25.0 bits)