GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001225-TA|BGIBMGA001225-PA|undefined
         (94 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ288392-1|ABC41342.1|  120|Apis mellifera nanos protein.              26   0.067
AY569719-1|AAS86672.1|  401|Apis mellifera complementary sex det...    21   1.9  
AY569718-1|AAS86671.1|  401|Apis mellifera complementary sex det...    21   1.9  
AY569715-1|AAS86668.1|  401|Apis mellifera complementary sex det...    21   1.9  
AY569714-1|AAS86667.1|  401|Apis mellifera complementary sex det...    21   1.9  
AY569713-1|AAS86666.1|  401|Apis mellifera complementary sex det...    21   1.9  
AY569711-1|AAS86664.1|  401|Apis mellifera complementary sex det...    21   1.9  
AY569702-1|AAS86655.1|  400|Apis mellifera complementary sex det...    21   1.9  
AY350616-1|AAQ57658.1|  401|Apis mellifera complementary sex det...    21   1.9  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              19   7.7  

>DQ288392-1|ABC41342.1|  120|Apis mellifera nanos protein.
          Length = 120

 Score = 26.2 bits (55), Expect = 0.067
 Identities = 17/53 (32%), Positives = 25/53 (47%), Gaps = 2/53 (3%)

Query: 38 DVEYCPSDDEET--EINIHQELLKKPIREQITWNTHYLQPEREDEKTLIKKAD 88
          D EYCP  D  T  E    ++  KKP+  +  +  +  + E    K L+K AD
Sbjct: 10 DFEYCPDLDNVTMPETTPRRKKNKKPLPTECVFCRNNGEEEAYYRKHLLKDAD 62


>AY569719-1|AAS86672.1|  401|Apis mellifera complementary sex
           determiner protein.
          Length = 401

 Score = 21.4 bits (43), Expect = 1.9
 Identities = 7/17 (41%), Positives = 13/17 (76%)

Query: 76  EREDEKTLIKKADDLTE 92
           ERE+ K ++ K +++TE
Sbjct: 172 EREEIKNILNKTNEITE 188


>AY569718-1|AAS86671.1|  401|Apis mellifera complementary sex
           determiner protein.
          Length = 401

 Score = 21.4 bits (43), Expect = 1.9
 Identities = 7/17 (41%), Positives = 13/17 (76%)

Query: 76  EREDEKTLIKKADDLTE 92
           ERE+ K ++ K +++TE
Sbjct: 172 EREEIKNILNKTNEITE 188


>AY569715-1|AAS86668.1|  401|Apis mellifera complementary sex
           determiner protein.
          Length = 401

 Score = 21.4 bits (43), Expect = 1.9
 Identities = 7/17 (41%), Positives = 13/17 (76%)

Query: 76  EREDEKTLIKKADDLTE 92
           ERE+ K ++ K +++TE
Sbjct: 172 EREEIKNILNKTNEITE 188


>AY569714-1|AAS86667.1|  401|Apis mellifera complementary sex
           determiner protein.
          Length = 401

 Score = 21.4 bits (43), Expect = 1.9
 Identities = 7/17 (41%), Positives = 13/17 (76%)

Query: 76  EREDEKTLIKKADDLTE 92
           ERE+ K ++ K +++TE
Sbjct: 172 EREEIKNILNKTNEITE 188


>AY569713-1|AAS86666.1|  401|Apis mellifera complementary sex
           determiner protein.
          Length = 401

 Score = 21.4 bits (43), Expect = 1.9
 Identities = 7/17 (41%), Positives = 13/17 (76%)

Query: 76  EREDEKTLIKKADDLTE 92
           ERE+ K ++ K +++TE
Sbjct: 172 EREEIKNILNKTNEITE 188


>AY569711-1|AAS86664.1|  401|Apis mellifera complementary sex
           determiner protein.
          Length = 401

 Score = 21.4 bits (43), Expect = 1.9
 Identities = 7/17 (41%), Positives = 13/17 (76%)

Query: 76  EREDEKTLIKKADDLTE 92
           ERE+ K ++ K +++TE
Sbjct: 172 EREEIKNILNKTNEITE 188


>AY569702-1|AAS86655.1|  400|Apis mellifera complementary sex
           determiner protein.
          Length = 400

 Score = 21.4 bits (43), Expect = 1.9
 Identities = 7/17 (41%), Positives = 13/17 (76%)

Query: 76  EREDEKTLIKKADDLTE 92
           ERE+ K ++ K +++TE
Sbjct: 172 EREEIKNILNKTNEITE 188


>AY350616-1|AAQ57658.1|  401|Apis mellifera complementary sex
           determiner protein.
          Length = 401

 Score = 21.4 bits (43), Expect = 1.9
 Identities = 7/17 (41%), Positives = 13/17 (76%)

Query: 76  EREDEKTLIKKADDLTE 92
           ERE+ K ++ K +++TE
Sbjct: 172 EREEIKNILNKTNEITE 188


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 19.4 bits (38), Expect = 7.7
 Identities = 11/50 (22%), Positives = 22/50 (44%)

Query: 36  DTDVEYCPSDDEETEINIHQELLKKPIREQITWNTHYLQPEREDEKTLIK 85
           D DV+     ++  +   H+ +  +PI  Q     +   PE +D + + K
Sbjct: 614 DIDVKTVQVIEDAAQKKKHRAIRPEPIDAQFDIIQNIYIPEPQDIENIFK 663


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.312    0.133    0.379 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 29,780
Number of Sequences: 429
Number of extensions: 1124
Number of successful extensions: 10
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of query: 94
length of database: 140,377
effective HSP length: 49
effective length of query: 45
effective length of database: 119,356
effective search space:  5371020
effective search space used:  5371020
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.0 bits)
S2: 38 (19.4 bits)