Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001225-TA|BGIBMGA001225-PA|undefined
(94 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g08760.1 68417.m01444 hypothetical protein 30 0.19
At3g01160.1 68416.m00020 expressed protein 30 0.19
At4g03590.1 68417.m00494 hypothetical protein 29 0.59
At3g05670.1 68416.m00631 PHD finger family protein contains Pfam... 29 0.59
At2g39260.1 68415.m04821 MIF4G domain-containing protein similar... 28 1.0
At2g35920.1 68415.m04409 helicase domain-containing protein simi... 27 1.4
At1g75190.1 68414.m08735 expressed protein 27 1.8
At1g64570.1 68414.m07319 expressed protein 27 2.4
At1g54960.1 68414.m06277 NPK1-related protein kinase, putative (... 27 2.4
At5g58000.1 68418.m07256 phosphatase-related weak similarity to ... 26 3.2
At3g55060.1 68416.m06115 expressed protein contains weak similar... 26 3.2
At5g37620.1 68418.m04531 DC1 domain-containing protein contains ... 26 4.2
At1g75150.1 68414.m08729 expressed protein ; expression supporte... 26 4.2
At1g32340.1 68414.m03985 zinc finger (C3HC4-type RING finger) fa... 26 4.2
At5g55660.1 68418.m06940 expressed protein similar to unknown pr... 25 5.5
At1g27460.1 68414.m03348 calmodulin-binding protein similar to c... 25 5.5
At5g25110.1 68418.m02975 CBL-interacting protein kinase 25 (CIPK... 25 7.3
At5g16780.1 68418.m01965 SART-1 family protein contains Pfam dom... 25 7.3
At4g02400.1 68417.m00324 U3 ribonucleoprotein (Utp) family prote... 25 7.3
At2g21150.1 68415.m02509 XAP5 family protein contains Pfam profi... 25 7.3
At1g64320.1 68414.m07289 myosin heavy chain-related similar to m... 25 7.3
At5g22500.1 68418.m02626 acyl CoA reductase, putative / male-ste... 25 9.7
At4g31160.1 68417.m04423 transducin family protein / WD-40 repea... 25 9.7
At4g10800.1 68417.m01760 expressed protein predicted proteins, A... 25 9.7
At3g17160.1 68416.m02189 expressed protein 25 9.7
At2g17050.1 68415.m01968 disease resistance protein (TIR-NBS-LRR... 25 9.7
At1g65010.1 68414.m07368 expressed protein similar to endosome-a... 25 9.7
At1g47350.1 68414.m05242 F-box family protein-related contains T... 25 9.7
At1g29220.1 68414.m03574 transcriptional regulator family protei... 25 9.7
>At4g08760.1 68417.m01444 hypothetical protein
Length = 521
Score = 30.3 bits (65), Expect = 0.19
Identities = 16/52 (30%), Positives = 25/52 (48%)
Query: 43 PSDDEETEINIHQELLKKPIREQITWNTHYLQPEREDEKTLIKKADDLTERV 94
P DD ET++N+ ++ +E + T +LQ L K D LT +V
Sbjct: 265 PEDDLETKVNLKKQKKNFENKETMEGYTSFLQMIEAKVDLLTSKVDSLTSKV 316
>At3g01160.1 68416.m00020 expressed protein
Length = 380
Score = 30.3 bits (65), Expect = 0.19
Identities = 24/94 (25%), Positives = 42/94 (44%), Gaps = 7/94 (7%)
Query: 2 EENEKIKGILPRRSIKEPMLSNRKCLLIDRGMDSDTDVEYCPSDDEETEIN-----IHQE 56
EE++ ++ + K+ + L+ +DSD D+E D E N + +E
Sbjct: 75 EEDDLGNEVINQSKKKDKKKDKYRALIEAEDVDSDKDLEEENDQDMEVTFNTGLEDLSKE 134
Query: 57 LLKKPIRE-QITWNTHYLQPEREDEKTLIKKADD 89
+LKK + + W T YL+ RE ++ K D
Sbjct: 135 ILKKKDNQSESVWET-YLRQRREKKRARKNKQKD 167
>At4g03590.1 68417.m00494 hypothetical protein
Length = 246
Score = 28.7 bits (61), Expect = 0.59
Identities = 19/75 (25%), Positives = 35/75 (46%), Gaps = 7/75 (9%)
Query: 20 MLSNRKCLLIDRGMDSDTDVEYCPSDDEETEINIHQELLKKPIREQITWNTHYLQPERED 79
M+ + L++ + D SDDEET+ N+H+ + + W+ H +
Sbjct: 11 MIEEKLSKLMEEIESVEADESEDTSDDEETKTNVHEANFDMLMAPE--WDVHSF-----E 63
Query: 80 EKTLIKKADDLTERV 94
EKT+IK + + + V
Sbjct: 64 EKTMIKDSMEASSSV 78
>At3g05670.1 68416.m00631 PHD finger family protein contains Pfam
domain, PF00628: PHD-finger
Length = 883
Score = 28.7 bits (61), Expect = 0.59
Identities = 15/36 (41%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Query: 22 SNRKCLLIDRGMD-SDTDVEYCPSDDEETEINIHQE 56
SNRK D+G D SD D D+EE+E ++ +E
Sbjct: 12 SNRKVRSKDKGSDESDEDYVISDEDEEESEADLKEE 47
>At2g39260.1 68415.m04821 MIF4G domain-containing protein similar
to hUPF2 [Homo sapiens] GI:12232320; contains Pfam
profile PF02854: MIF4G domain
Length = 1186
Score = 27.9 bits (59), Expect = 1.0
Identities = 17/51 (33%), Positives = 23/51 (45%), Gaps = 1/51 (1%)
Query: 33 MDSDTDVEYCPSDDEETEINIHQELLKKPIREQITWNTHYLQPEREDEKTL 83
MD D + D+E E E +KK I ++T + L PER D L
Sbjct: 1 MDHPEDESHSEKQDDE-EALARLEEIKKSIEAKLTLRQNNLNPERPDSAYL 50
>At2g35920.1 68415.m04409 helicase domain-containing protein similar
to DEIH-box RNA/DNA helicase [Arabidopsis thaliana]
GI:5881579; contains Pfam profiles PF04408: Helicase
associated domain (HA2), PF00271: Helicase conserved
C-terminal domain
Length = 995
Score = 27.5 bits (58), Expect = 1.4
Identities = 15/32 (46%), Positives = 21/32 (65%), Gaps = 4/32 (12%)
Query: 9 GILPRRSIKEPMLSNRKCLLID----RGMDSD 36
G+L RR I++P L+N LL+D RGM+ D
Sbjct: 331 GVLLRRLIEDPNLTNVSHLLVDEIHERGMNED 362
>At1g75190.1 68414.m08735 expressed protein
Length = 131
Score = 27.1 bits (57), Expect = 1.8
Identities = 16/52 (30%), Positives = 28/52 (53%), Gaps = 3/52 (5%)
Query: 12 PRRSIKEPMLSNRKCLLIDRGMDSDTDVEYCPSDDEETEINIHQELLKKPIR 63
PR++++ P ++ D + D E +DEE E+ I++E LKK +R
Sbjct: 34 PRKNLENPEDFKKEESEEDEDYEEYEDEE---EEDEEAEVVINREKLKKKVR 82
>At1g64570.1 68414.m07319 expressed protein
Length = 1239
Score = 26.6 bits (56), Expect = 2.4
Identities = 13/36 (36%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Query: 30 DRGMDSDTDVEY-CPSDDEETEINIHQELLKKPIRE 64
+R +D D + E C DDEE +++ + L P RE
Sbjct: 22 NRDLDKDEEEEEECEYDDEEEDVDFNPFLKDSPSRE 57
>At1g54960.1 68414.m06277 NPK1-related protein kinase, putative
(ANP2) similar to protein kinase [Nicotiana tabacum]
gi|456309|dbj|BAA05648; identical to cDNA NPK1-related
protein kinase 2, partial cds GI:2342424
Length = 596
Score = 26.6 bits (56), Expect = 2.4
Identities = 14/36 (38%), Positives = 19/36 (52%), Gaps = 4/36 (11%)
Query: 12 PRRSIKEPMLSNRKCLLIDRGMDSDTDVEYCPSDDE 47
P +SI+ +N CL + G D D D + C DDE
Sbjct: 387 PEKSIQ----NNSLCLKSNNGYDDDDDNDMCLIDDE 418
>At5g58000.1 68418.m07256 phosphatase-related weak similarity to CTD
phosphatase-like 3 [Arabidopsis thaliana] GI:22212705;
contains Pfam profiles PF02453: Reticulon, PF00533:
BRCA1 C Terminus (BRCT) domain, PF03031: NLI interacting
factor
Length = 1011
Score = 26.2 bits (55), Expect = 3.2
Identities = 13/61 (21%), Positives = 28/61 (45%)
Query: 2 EENEKIKGILPRRSIKEPMLSNRKCLLIDRGMDSDTDVEYCPSDDEETEINIHQELLKKP 61
EE ++ + + S+ +D +DS +D PS++EE E ++ L ++
Sbjct: 566 EEEKEQMSVASDSPVHSSSSSDDLAAFLDAELDSASDASSGPSEEEEAEDDVESGLKRQK 625
Query: 62 I 62
+
Sbjct: 626 L 626
>At3g55060.1 68416.m06115 expressed protein contains weak similarity
to intracellular protein transport protein USO1
(Swiss-Prot:P25386) [Saccharomyces cerevisiae];
expression supported by MPSS
Length = 896
Score = 26.2 bits (55), Expect = 3.2
Identities = 11/60 (18%), Positives = 26/60 (43%)
Query: 22 SNRKCLLIDRGMDSDTDVEYCPSDDEETEINIHQELLKKPIREQITWNTHYLQPEREDEK 81
SN ++DR +D + +E C + + + + ++ + ++ W + DEK
Sbjct: 127 SNVSSKVLDRYIDGEEHLEPCKQKSNSSHSGVSESINRRRLPPRVQWTVPTSPSDTFDEK 186
>At5g37620.1 68418.m04531 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 652
Score = 25.8 bits (54), Expect = 4.2
Identities = 9/24 (37%), Positives = 14/24 (58%)
Query: 19 PMLSNRKCLLIDRGMDSDTDVEYC 42
P +++KCLL D D D + +C
Sbjct: 199 PDYADKKCLLCDEKFDQDQGLHHC 222
>At1g75150.1 68414.m08729 expressed protein ; expression supported
by MPSS
Length = 753
Score = 25.8 bits (54), Expect = 4.2
Identities = 17/56 (30%), Positives = 26/56 (46%)
Query: 33 MDSDTDVEYCPSDDEETEINIHQELLKKPIREQITWNTHYLQPEREDEKTLIKKAD 88
M +D D Y SDDEE E + Q+ L K + + ++ E+ IKK +
Sbjct: 555 MFTDEDDVYVSSDDEEMEKKLLQQRLYKKMELKAKSSSSTADENSEEILRHIKKPE 610
>At1g32340.1 68414.m03985 zinc finger (C3HC4-type RING finger)
family protein contains a Zinc finger, C3HC4 type (RING
finger) signature, PROSITE:PS00518
Length = 688
Score = 25.8 bits (54), Expect = 4.2
Identities = 12/35 (34%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Query: 9 GILPRRSIKEPMLSNRKCLLIDRGMDSDTDVEYCP 43
GIL +R + + + L++ + ++S TDV YCP
Sbjct: 434 GIL-KRLLGDEAYERWETLMLQKTLESMTDVAYCP 467
>At5g55660.1 68418.m06940 expressed protein similar to unknown
protein (pir||T08929)
Length = 778
Score = 25.4 bits (53), Expect = 5.5
Identities = 13/43 (30%), Positives = 23/43 (53%)
Query: 47 EETEINIHQELLKKPIREQITWNTHYLQPEREDEKTLIKKADD 89
EE E N +E+ + + + +T +PE ED+KT K ++
Sbjct: 205 EEEETNKGEEVKEANKEDDVEADTKVAEPEVEDKKTESKDENE 247
>At1g27460.1 68414.m03348 calmodulin-binding protein similar to
calmodulin-binding protein MPCBP [Zea mays] GI:10086260;
contains Pfam profile PF00515: TPR Domain
Length = 694
Score = 25.4 bits (53), Expect = 5.5
Identities = 12/31 (38%), Positives = 17/31 (54%)
Query: 39 VEYCPSDDEETEINIHQELLKKPIREQITWN 69
VE CP D+ E I + L+KK + I W+
Sbjct: 242 VEACPKDNIEEAIVLLMLLVKKMVVGDIQWD 272
>At5g25110.1 68418.m02975 CBL-interacting protein kinase 25 (CIPK25)
identical to CBL-interacting protein kinase 25
[Arabidopsis thaliana] gi|17646697|gb|AAL41008
Length = 488
Score = 25.0 bits (52), Expect = 7.3
Identities = 12/33 (36%), Positives = 16/33 (48%)
Query: 39 VEYCPSDDEETEINIHQELLKKPIREQITWNTH 71
VE C S + E N E +P E+I W+ H
Sbjct: 431 VELCKSAGDTLEYNRLYEEHVRPALEEIVWSWH 463
>At5g16780.1 68418.m01965 SART-1 family protein contains Pfam
domain, PF03343: SART-1 family
Length = 820
Score = 25.0 bits (52), Expect = 7.3
Identities = 17/63 (26%), Positives = 30/63 (47%)
Query: 31 RGMDSDTDVEYCPSDDEETEINIHQELLKKPIREQITWNTHYLQPEREDEKTLIKKADDL 90
R D DT+ E D+E E + ++ +K+ +E+ + ER++EK K +
Sbjct: 68 RSRDEDTEKEISRGRDKEREKDKSRDRVKEKDKEKERNRHKDRENERDNEKEKDKDRARV 127
Query: 91 TER 93
ER
Sbjct: 128 KER 130
>At4g02400.1 68417.m00324 U3 ribonucleoprotein (Utp) family
protein contains Pfam profile: PF04615 Utp14 protein
Length = 858
Score = 25.0 bits (52), Expect = 7.3
Identities = 32/96 (33%), Positives = 45/96 (46%), Gaps = 16/96 (16%)
Query: 1 MEENEKIKGI-LPRRSIKEPMLSNRKCLLIDRGMDSDTDVEYCPSDDE-----ETEINIH 54
+ +N+K KG LP +K ++N K R ++SD D + SDDE E E +
Sbjct: 12 LAKNKKRKGPHLPNSILKT--IANEK-----RPLNSDEDDDEIDSDDENVDLYEYEEGVP 64
Query: 55 QELLKKPIREQITWNTHYLQPER-EDEKTLIKKADD 89
+E KK R N Y PE EDE ++ DD
Sbjct: 65 EEESKKNNRYDRVDNYDYELPEDFEDEN--VESDDD 98
>At2g21150.1 68415.m02509 XAP5 family protein contains Pfam profile:
PF04921 XAP5 protein
Length = 337
Score = 25.0 bits (52), Expect = 7.3
Identities = 12/35 (34%), Positives = 17/35 (48%), Gaps = 1/35 (2%)
Query: 32 GMDSDTDVEYCPSDDEETEINIHQELLKKP-IREQ 65
G D + + P + E E +E LKK +REQ
Sbjct: 153 GKDPSVETNFLPDSEREAEEQAERERLKKQWLREQ 187
>At1g64320.1 68414.m07289 myosin heavy chain-related similar to
myosin heavy chain (GI:4249703) [Rana catesbeiana];
similar to smooth muscle myosin heavy chain SM2
(GI:2352945) [Homo sapiens]
Length = 476
Score = 25.0 bits (52), Expect = 7.3
Identities = 13/43 (30%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
Query: 52 NIHQELLKKPIREQITWNTHYLQPEREDEKTLIKKADDLTERV 94
++H E+ K E + L E D+K L+K+ DD+ R+
Sbjct: 170 SLHMEMKTKSAHEMEDASKK-LDTEVSDQKKLVKEQDDIIRRL 211
>At5g22500.1 68418.m02626 acyl CoA reductase, putative /
male-sterility protein, putative similar to acyl CoA
reductase [Simmondsia chinensis] GI:5020215; contains
Pfam profile PF03015: Male sterility protein; identical
to cDNA male sterility 2-like protein GI:1491614
Length = 491
Score = 24.6 bits (51), Expect = 9.7
Identities = 9/21 (42%), Positives = 15/21 (71%)
Query: 44 SDDEETEINIHQELLKKPIRE 64
S D E +INI +L+K+ ++E
Sbjct: 185 SGDRELDINIEHDLMKQKLKE 205
>At4g31160.1 68417.m04423 transducin family protein / WD-40 repeat
family protein contains 2 WD-40 repeats (PF00400);
KIAA0800 protein, Homo sapiens GI:3882321 EMBL:AB018343
Length = 1846
Score = 24.6 bits (51), Expect = 9.7
Identities = 15/49 (30%), Positives = 24/49 (48%), Gaps = 3/49 (6%)
Query: 2 EENEKIKGILPRRSIKEPMLSNRKCLLIDRGMDSDTDVEYCPSDDEETE 50
E + G++ +E M S+ + I R +D D + P DD+ETE
Sbjct: 1702 EPTDSFLGLITMED-QEDMFSSARMYEIGRRRPTDDDSD--PDDDDETE 1747
>At4g10800.1 68417.m01760 expressed protein predicted proteins,
Arabidopsis thaliana
Length = 283
Score = 24.6 bits (51), Expect = 9.7
Identities = 13/43 (30%), Positives = 22/43 (51%)
Query: 21 LSNRKCLLIDRGMDSDTDVEYCPSDDEETEINIHQELLKKPIR 63
L N L+ + + VE+ S+DEE + I +E +K +R
Sbjct: 29 LKNSPELVDELKTSAQEQVEFMLSEDEEVRLLISEEEVKSVVR 71
>At3g17160.1 68416.m02189 expressed protein
Length = 165
Score = 24.6 bits (51), Expect = 9.7
Identities = 12/31 (38%), Positives = 17/31 (54%)
Query: 34 DSDTDVEYCPSDDEETEINIHQELLKKPIRE 64
D D D + DDEE E ++ E L +P+ E
Sbjct: 64 DDDDDDDDEDEDDEEGEEDLGTEYLVRPVGE 94
>At2g17050.1 68415.m01968 disease resistance protein (TIR-NBS-LRR
class), putative domain signature TIR-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 1355
Score = 24.6 bits (51), Expect = 9.7
Identities = 9/18 (50%), Positives = 13/18 (72%)
Query: 68 WNTHYLQPEREDEKTLIK 85
W+T +QP EDE+T +K
Sbjct: 335 WDTSIIQPLLEDEETKLK 352
>At1g65010.1 68414.m07368 expressed protein similar to
endosome-associated protein (GI:1016368) [Homo sapiens];
similar to Centromeric protein E (CENP-E protein)
(Swiss-Prot:Q02224) [Homo sapiens]
Length = 1318
Score = 24.6 bits (51), Expect = 9.7
Identities = 10/16 (62%), Positives = 14/16 (87%)
Query: 77 REDEKTLIKKADDLTE 92
RE E TL+KKA++L+E
Sbjct: 837 RERETTLLKKAEELSE 852
>At1g47350.1 68414.m05242 F-box family protein-related contains
TIGR01640: F-box protein interaction domain
Length = 528
Score = 24.6 bits (51), Expect = 9.7
Identities = 16/58 (27%), Positives = 23/58 (39%)
Query: 23 NRKCLLIDRGMDSDTDVEYCPSDDEETEINIHQELLKKPIREQITWNTHYLQPEREDE 80
+R C+ +D + D Y +D E I +LLK I E N + DE
Sbjct: 430 SRVCVFVDNVFEKDCSRFYALADHVEDINVIDSKLLKSKIYEDTYPNLEDYEQSDHDE 487
>At1g29220.1 68414.m03574 transcriptional regulator family protein
similar to Transcriptional regulator protein HCNGP
(Swiss-Prot:Q02614) [Mus musculus]
Length = 351
Score = 24.6 bits (51), Expect = 9.7
Identities = 16/60 (26%), Positives = 26/60 (43%)
Query: 19 PMLSNRKCLLIDRGMDSDTDVEYCPSDDEETEINIHQELLKKPIREQITWNTHYLQPERE 78
P S LL + D ++E ++EE E +QE +K I E +Y+ E +
Sbjct: 3 PKKSEGIALLSVYSDEDDEEMEDAEEEEEEDEKQRNQEESEKIIEEDQVEEANYMDEEEK 62
Database: arabidopsis
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.312 0.133 0.379
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,523,184
Number of Sequences: 28952
Number of extensions: 107382
Number of successful extensions: 228
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 207
Number of HSP's gapped (non-prelim): 31
length of query: 94
length of database: 12,070,560
effective HSP length: 69
effective length of query: 25
effective length of database: 10,072,872
effective search space: 251821800
effective search space used: 251821800
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)
S2: 51 (24.6 bits)
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