GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001224-TA|BGIBMGA001224-PA|IPR006875|Sarcoglycan complex
subunit protein
         (325 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF127810-1|ABL67947.1|  311|Tribolium castaneum nicotinic acetyl...    22   5.3  
EF127809-1|ABL67946.1|  311|Tribolium castaneum nicotinic acetyl...    22   5.3  
EF127808-1|ABL67945.1|  311|Tribolium castaneum nicotinic acetyl...    22   5.3  
EF127807-1|ABL67944.1|  311|Tribolium castaneum nicotinic acetyl...    22   5.3  
EF127806-1|ABL67943.1|  311|Tribolium castaneum nicotinic acetyl...    22   5.3  
AM292336-1|CAL23148.2|  455|Tribolium castaneum gustatory recept...    22   5.3  
AJ005422-1|CAA06528.1|  287|Tribolium castaneum caudal protein p...    22   5.3  
AJ005421-1|CAA06527.1|  249|Tribolium castaneum caudal protein p...    22   5.3  

>EF127810-1|ABL67947.1|  311|Tribolium castaneum nicotinic
          acetylcholine receptor subunitalpha 6 transcript
          variant 5 protein.
          Length = 311

 Score = 22.2 bits (45), Expect = 5.3
 Identities = 9/28 (32%), Positives = 17/28 (60%)

Query: 7  KQQNGGIDDLRIPYADKITPEPILHNNA 34
          + + GG+ DLRI       P+ +++N+A
Sbjct: 69 ESEYGGVKDLRITPNKLWKPDVLMYNSA 96


>EF127809-1|ABL67946.1|  311|Tribolium castaneum nicotinic
          acetylcholine receptor subunitalpha 6 transcript
          variant 4 protein.
          Length = 311

 Score = 22.2 bits (45), Expect = 5.3
 Identities = 9/28 (32%), Positives = 17/28 (60%)

Query: 7  KQQNGGIDDLRIPYADKITPEPILHNNA 34
          + + GG+ DLRI       P+ +++N+A
Sbjct: 69 ESEYGGVKDLRITPNKLWKPDVLMYNSA 96


>EF127808-1|ABL67945.1|  311|Tribolium castaneum nicotinic
          acetylcholine receptor subunitalpha 6 transcript
          variant 3 protein.
          Length = 311

 Score = 22.2 bits (45), Expect = 5.3
 Identities = 9/28 (32%), Positives = 17/28 (60%)

Query: 7  KQQNGGIDDLRIPYADKITPEPILHNNA 34
          + + GG+ DLRI       P+ +++N+A
Sbjct: 69 ESEYGGVKDLRITPNKLWKPDVLMYNSA 96


>EF127807-1|ABL67944.1|  311|Tribolium castaneum nicotinic
          acetylcholine receptor subunitalpha 6 transcript
          variant 2 protein.
          Length = 311

 Score = 22.2 bits (45), Expect = 5.3
 Identities = 9/28 (32%), Positives = 17/28 (60%)

Query: 7  KQQNGGIDDLRIPYADKITPEPILHNNA 34
          + + GG+ DLRI       P+ +++N+A
Sbjct: 69 ESEYGGVKDLRITPNKLWKPDVLMYNSA 96


>EF127806-1|ABL67943.1|  311|Tribolium castaneum nicotinic
          acetylcholine receptor subunitalpha 6 transcript
          variant 1 protein.
          Length = 311

 Score = 22.2 bits (45), Expect = 5.3
 Identities = 9/28 (32%), Positives = 17/28 (60%)

Query: 7  KQQNGGIDDLRIPYADKITPEPILHNNA 34
          + + GG+ DLRI       P+ +++N+A
Sbjct: 69 ESEYGGVKDLRITPNKLWKPDVLMYNSA 96


>AM292336-1|CAL23148.2|  455|Tribolium castaneum gustatory receptor
           candidate 15 protein.
          Length = 455

 Score = 22.2 bits (45), Expect = 5.3
 Identities = 6/24 (25%), Positives = 17/24 (70%)

Query: 64  YILVIALMFMMIINLALTLWVLKV 87
           +++V  L+F++I  L +  W++++
Sbjct: 117 FVIVAHLLFLVIFVLNIWCWIVEI 140


>AJ005422-1|CAA06528.1|  287|Tribolium castaneum caudal protein
           protein.
          Length = 287

 Score = 22.2 bits (45), Expect = 5.3
 Identities = 8/34 (23%), Positives = 17/34 (50%)

Query: 184 SVTIGADTLTVSSSAGVTLNTAVQTSLVKAPPAK 217
           S T+    ++   +    L+  +QT + + PPA+
Sbjct: 88  SPTVSGSEMSSPGAGSGNLSPQIQTQVARPPPAR 121


>AJ005421-1|CAA06527.1|  249|Tribolium castaneum caudal protein
           protein.
          Length = 249

 Score = 22.2 bits (45), Expect = 5.3
 Identities = 8/34 (23%), Positives = 17/34 (50%)

Query: 184 SVTIGADTLTVSSSAGVTLNTAVQTSLVKAPPAK 217
           S T+    ++   +    L+  +QT + + PPA+
Sbjct: 88  SPTVSGSEMSSPGAGSGNLSPQIQTQVARPPPAR 121


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.321    0.136    0.403 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 65,827
Number of Sequences: 317
Number of extensions: 2389
Number of successful extensions: 13
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 5
Number of HSP's gapped (non-prelim): 8
length of query: 325
length of database: 114,650
effective HSP length: 57
effective length of query: 268
effective length of database: 96,581
effective search space: 25883708
effective search space used: 25883708
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 43 (21.4 bits)