GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001224-TA|BGIBMGA001224-PA|IPR006875|Sarcoglycan complex
subunit protein
         (325 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1006.06 |rgf2||RhoGEF Rgf2|Schizosaccharomyces pombe|chr 1||...    35   0.014
SPBC106.08c |mug2||DUF1773 family protein 1|Schizosaccharomyces ...    29   1.2  
SPCC1259.13 |chk1|rad27|Chk1 protein kinase|Schizosaccharomyces ...    26   8.4  

>SPAC1006.06 |rgf2||RhoGEF Rgf2|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1158

 Score = 35.1 bits (77), Expect = 0.014
 Identities = 26/100 (26%), Positives = 45/100 (45%), Gaps = 1/100 (1%)

Query: 130 ISIESTRNFSVSTRDAQGLLQSRLFLGHDRLELNVGRFEVRDSRGALLLGAGQDSVTIGA 189
           +++E  +  ++  R   GLL    FLG + +++ +      D   ALLLG   DS  +  
Sbjct: 208 VAVEFRKRLNIGDRVKDGLLYKDAFLGSEAVDVLMHIVRTTDRNLALLLGRALDSQKMFH 267

Query: 190 DTLTVSSSAGVTLNTAVQTSLVKAPPAKPLVLESPTRSLE 229
           D +T S     +L    Q   + +PP     ++S   S+E
Sbjct: 268 D-VTYSHRLRDSLKEVYQYRRIISPPPGLSSMDSNGSSIE 306


>SPBC106.08c |mug2||DUF1773 family protein 1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 296

 Score = 28.7 bits (61), Expect = 1.2
 Identities = 11/37 (29%), Positives = 19/37 (51%)

Query: 17  RIPYADKITPEPILHNNAGRDTKPDSIRNSYNSQFKV 53
           R+P +D  T E I+ NN     KP  ++ + + +  V
Sbjct: 122 RLPQSDNTTTERIIENNPNYSNKPSKLKRALSGENSV 158


>SPCC1259.13 |chk1|rad27|Chk1 protein kinase|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 496

 Score = 25.8 bits (54), Expect = 8.4
 Identities = 10/25 (40%), Positives = 15/25 (60%)

Query: 34  AGRDTKPDSIRNSYNSQFKVGIYGW 58
           A RD KP++I   YN   K+  +G+
Sbjct: 134 AHRDLKPENILLDYNGNLKISDFGF 158


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.321    0.136    0.403 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,268,748
Number of Sequences: 5004
Number of extensions: 44274
Number of successful extensions: 100
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 97
Number of HSP's gapped (non-prelim): 3
length of query: 325
length of database: 2,362,478
effective HSP length: 73
effective length of query: 252
effective length of database: 1,997,186
effective search space: 503290872
effective search space used: 503290872
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 54 (25.8 bits)