GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001224-TA|BGIBMGA001224-PA|IPR006875|Sarcoglycan complex
subunit protein
         (325 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0433 - 3402250-3402536,3402644-3403030,3403523-3403957,340...    31   0.95 

>12_01_0433 -
           3402250-3402536,3402644-3403030,3403523-3403957,
           3404071-3404562,3404718-3404821,3404913-3404994,
           3405085-3405441,3405532-3406089,3406376-3406479,
           3406575-3406650,3406764-3406898,3407192-3407494,
           3407581-3408345,3409459-3412591,3412763-3412882
          Length = 2445

 Score = 31.5 bits (68), Expect = 0.95
 Identities = 22/86 (25%), Positives = 42/86 (48%), Gaps = 5/86 (5%)

Query: 131 SIESTRNFSVSTRDAQGLLQSRLFLGHDRLELNVGRFEVRDSRGALLL----GAGQDSVT 186
           SI  + N S +  DA+GL  ++  + H+  + ++    VR    A L     G G+D + 
Sbjct: 430 SISESNNVSRAQTDAKGLKTAQPLM-HNAAKTSMKNVVVRKDENAGLTKRKTGRGRDKIA 488

Query: 187 IGADTLTVSSSAGVTLNTAVQTSLVK 212
                +++S S+G  L T +Q  +++
Sbjct: 489 KSVGKVSLSESSGEALPTEMQQEVIE 514


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.321    0.136    0.403 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,599,834
Number of Sequences: 37544
Number of extensions: 306952
Number of successful extensions: 633
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 632
Number of HSP's gapped (non-prelim): 3
length of query: 325
length of database: 14,793,348
effective HSP length: 82
effective length of query: 243
effective length of database: 11,714,740
effective search space: 2846681820
effective search space used: 2846681820
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 60 (28.3 bits)