GeneModel BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001224-TA|BGIBMGA001224-PA|IPR006875|Sarcoglycan complex
subunit protein
         (325 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_25670| Best HMM Match : Sarcoglycan_1 (HMM E-Value=6.2e-06)         58   7e-09
SB_4344| Best HMM Match : zf-C2H2 (HMM E-Value=0)                      33   0.42 
SB_1061| Best HMM Match : Extensin_2 (HMM E-Value=2)                   31   0.97 
SB_35625| Best HMM Match : DUF296 (HMM E-Value=0.0053)                 31   1.7  
SB_47153| Best HMM Match : CCG (HMM E-Value=3.4)                       30   3.0  
SB_43495| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   3.0  
SB_47824| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.9  
SB_24730| Best HMM Match : Kinesin (HMM E-Value=2.3e-17)               29   5.2  

>SB_25670| Best HMM Match : Sarcoglycan_1 (HMM E-Value=6.2e-06)
          Length = 436

 Score = 58.4 bits (135), Expect = 7e-09
 Identities = 31/73 (42%), Positives = 43/73 (58%)

Query: 199 GVTLNTAVQTSLVKAPPAKPLVLESPTRSLEMHAAQNIALESRAGDISASCLTTFRLRSI 258
           G     +VQT  V++PP + L LES TR L ++A + I +++ AG IS   LT   +RS 
Sbjct: 322 GAEFTGSVQTKAVRSPPKEHLTLESLTRQLHLNAPEGIQVKTVAGGISLQSLTDVNIRSK 381

Query: 259 AGSIRLDAPSIYM 271
            G I LDA SI +
Sbjct: 382 KGKITLDAQSIML 394


>SB_4344| Best HMM Match : zf-C2H2 (HMM E-Value=0)
          Length = 1080

 Score = 32.7 bits (71), Expect = 0.42
 Identities = 23/61 (37%), Positives = 30/61 (49%), Gaps = 3/61 (4%)

Query: 174 GALLLGAGQDSVTIGADT-LTVSSSAGVTLNTAVQTSLVKAPPAKPLVLESPTRSLEMHA 232
           GA L GAG  S+ +G DT + VS +       A+ T +  A    P  LE PT S +M  
Sbjct: 924 GASLGGAGATSIAVGTDTSMDVSRAEAANAMEALATVVAAAESVSP--LEIPTISQQMAE 981

Query: 233 A 233
           A
Sbjct: 982 A 982


>SB_1061| Best HMM Match : Extensin_2 (HMM E-Value=2)
          Length = 352

 Score = 31.5 bits (68), Expect = 0.97
 Identities = 19/64 (29%), Positives = 29/64 (45%), Gaps = 2/64 (3%)

Query: 188 GADTLTVSSSAGVTL--NTAVQTSLVKAPPAKPLVLESPTRSLEMHAAQNIALESRAGDI 245
           G   L +SSS    L  NTA+ T +   PPA   +L +P   L +    N+     +  I
Sbjct: 112 GVKNLMISSSIPGPLKGNTALNTGISNLPPAVEALLSTPAAELSIKPQVNLGNNCASAII 171

Query: 246 SASC 249
            ++C
Sbjct: 172 PSNC 175


>SB_35625| Best HMM Match : DUF296 (HMM E-Value=0.0053)
          Length = 885

 Score = 30.7 bits (66), Expect = 1.7
 Identities = 18/49 (36%), Positives = 28/49 (57%), Gaps = 1/49 (2%)

Query: 181 GQDSVTIGA-DTLTVSSSAGVTLNTAVQTSLVKAPPAKPLVLESPTRSL 228
           G +   +G+ D LT+SSS   T  T+ +TS V +    P+V  S +RS+
Sbjct: 320 GVEQTLLGSTDILTLSSSTTETSGTSAKTSPVTSASEMPVVTSSGSRSV 368


>SB_47153| Best HMM Match : CCG (HMM E-Value=3.4)
          Length = 328

 Score = 29.9 bits (64), Expect = 3.0
 Identities = 18/61 (29%), Positives = 30/61 (49%), Gaps = 1/61 (1%)

Query: 211 VKAPPAKPLVLESPTRSLEMHAAQ-NIALESRAGDISASCLTTFRLRSIAGSIRLDAPSI 269
           V +PP    +  SPT++     +Q +  LE R  +  A   T FR+ S+   ++  AP +
Sbjct: 33  VASPPNPASLNPSPTQTTGSPTSQESTRLERRTSEDGAGSGTEFRVYSVLPIVKRPAPDL 92

Query: 270 Y 270
           Y
Sbjct: 93  Y 93


>SB_43495| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1994

 Score = 29.9 bits (64), Expect = 3.0
 Identities = 19/64 (29%), Positives = 31/64 (48%), Gaps = 1/64 (1%)

Query: 185 VTIGADTLTVSSSAGVTLNTAVQTSLVKAPPAKPLVLESPTRSLEMHAAQNIALESRAGD 244
           V++ ++T T S+S   TL T+  TSL  A P   L   S +++L+     + +       
Sbjct: 232 VSVSSNT-TTSASVQKTLTTSASTSLAVAQPHTSLATSSNSQALKTETLNSSSASPAVST 290

Query: 245 ISAS 248
            SAS
Sbjct: 291 ASAS 294


>SB_47824| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 507

 Score = 29.5 bits (63), Expect = 3.9
 Identities = 13/44 (29%), Positives = 25/44 (56%), Gaps = 1/44 (2%)

Query: 60  KKCLYILVIALMFMMIINLALTLWVL-KVLDFNSEGMGQLRIVP 102
           K CLY  ++AL    ++ L + +W++ K+ +  S    +LR +P
Sbjct: 53  KSCLYFTIVALCSPHVLGLTVLMWIVGKIKEIFSGDPKRLRKLP 96


>SB_24730| Best HMM Match : Kinesin (HMM E-Value=2.3e-17)
          Length = 602

 Score = 29.1 bits (62), Expect = 5.2
 Identities = 26/77 (33%), Positives = 33/77 (42%), Gaps = 3/77 (3%)

Query: 165 GRFEVRDSRGALLLG--AGQDSVTIGADTLTVSSSA-GVTLNTAVQTSLVKAPPAKPLVL 221
           G    RDS+   LL    G D VT+    ++ SSS    TLNT    +  K    KP+V 
Sbjct: 115 GHIPYRDSKLTKLLADSLGGDGVTLMIACISPSSSVVSDTLNTLRYANRAKKIKNKPVVQ 174

Query: 222 ESPTRSLEMHAAQNIAL 238
             P   L M   + I L
Sbjct: 175 MDPKERLIMTLKREIKL 191


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.321    0.136    0.403 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,441,619
Number of Sequences: 59808
Number of extensions: 323265
Number of successful extensions: 687
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 681
Number of HSP's gapped (non-prelim): 10
length of query: 325
length of database: 16,821,457
effective HSP length: 82
effective length of query: 243
effective length of database: 11,917,201
effective search space: 2895879843
effective search space used: 2895879843
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 60 (28.3 bits)