GeneModel BLAST Result against fruitfly

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001224-TA|BGIBMGA001224-PA|IPR006875|Sarcoglycan complex
subunit protein
         (325 letters)

Database: fruitfly 
           52,641 sequences; 24,830,863 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL030994-1|CAA19736.1|  404|Drosophila melanogaster EG:4F1.1 pro...   270   2e-72
AF277393-1|AAG17402.1|  404|Drosophila melanogaster gamma/delta-...   270   2e-72
AE014298-251|AAF45663.1|  404|Drosophila melanogaster CG14808-PA...   270   2e-72
BT029112-1|ABJ17045.1|  504|Drosophila melanogaster IP14966p pro...    36   0.076
AF040989-1|AAC38849.1| 1395|Drosophila melanogaster roundabout 1...    36   0.076
AE013599-3446|AAF46887.1| 1395|Drosophila melanogaster CG13521-P...    36   0.076
AE013599-3445|AAM71113.2| 1429|Drosophila melanogaster CG13521-P...    36   0.076
AE014296-2119|AAS65016.1|  750|Drosophila melanogaster CG5620-PB...    31   2.2  
AE014296-2118|AAF49939.2|  750|Drosophila melanogaster CG5620-PA...    31   2.2  
AF177386-1|AAD51369.1| 3584|Drosophila melanogaster huntingtin h...    30   5.0  
AF147779-1|AAF03256.1| 3583|Drosophila melanogaster Huntington d...    30   5.0  
AF146362-1|AAF03255.1| 3583|Drosophila melanogaster Huntington d...    30   5.0  
AE014297-4258|AAF56808.1| 3583|Drosophila melanogaster CG9995-PA...    30   5.0  

>AL030994-1|CAA19736.1|  404|Drosophila melanogaster EG:4F1.1
           protein.
          Length = 404

 Score =  270 bits (661), Expect = 2e-72
 Identities = 129/273 (47%), Positives = 176/273 (64%), Gaps = 2/273 (0%)

Query: 53  VGIYGWRKKCLYILVIALMFMMIINLALTLWVLKVLDFNSEGMGQLRIVPXXXXXXXXAL 112
           +G+ GWRKKCLY L++ LM ++I NL LTLW+LKV++F++EGMGQL+IVP        A+
Sbjct: 134 LGLIGWRKKCLYTLLLLLMLLIITNLVLTLWILKVMEFSTEGMGQLKIVPGGIQLSGQAI 193

Query: 113 VLDSLFTSSIKSRRGQPISIESTRNFSVSTRDAQGLLQSRLFLGHDRLELNVGRFEVRDS 172
           ++D L  S+I+SR GQPISIES+RNFS++TRD  G++++ LFLGHD+ E     F + D+
Sbjct: 194 IMDMLRASTIRSRHGQPISIESSRNFSINTRDPNGMIENHLFLGHDKFECLSAGFRINDT 253

Query: 173 RGALLLGAGQDSVTIGADTLTVSSSAGVTLNTAVQTSLVKAPPAKPLVLESPTRSLEMHA 232
            G  L    +D VTIGA  L +    G     +VQT  V+A P + L LESPTR LEM A
Sbjct: 254 NGRSLFSVNRDEVTIGAHALRIDGEGGAVFRESVQTPHVRAEPGRELRLESPTRQLEMTA 313

Query: 233 AQNIALESRAGDISASCLTTFRLRSIAGSIRLDAPSIYMXXXXXXXXXXXXXQHPHDPHH 292
           A++I L+SRAG I    L   + R++ GS+RL++  I M                 D H 
Sbjct: 314 AKDINLQSRAGGIEVVALEDVKFRALDGSLRLESSKILMPNLRTAQPPILGTAQSRD-HM 372

Query: 293 QNIYQLCACANGKLFLAPPHGICAAREESLICR 325
             ++QLCAC+NGKLFLA PH ICA  ++S +CR
Sbjct: 373 HRVFQLCACSNGKLFLAAPHSICAG-DDSTVCR 404


>AF277393-1|AAG17402.1|  404|Drosophila melanogaster
           gamma/delta-sarcoglycan-like proteinSCG-GAMMA/DELTA
           protein.
          Length = 404

 Score =  270 bits (661), Expect = 2e-72
 Identities = 129/273 (47%), Positives = 176/273 (64%), Gaps = 2/273 (0%)

Query: 53  VGIYGWRKKCLYILVIALMFMMIINLALTLWVLKVLDFNSEGMGQLRIVPXXXXXXXXAL 112
           +G+ GWRKKCLY L++ LM ++I NL LTLW+LKV++F++EGMGQL+IVP        A+
Sbjct: 134 LGLIGWRKKCLYTLLLLLMLLIITNLVLTLWILKVMEFSTEGMGQLKIVPGGIQLSGQAI 193

Query: 113 VLDSLFTSSIKSRRGQPISIESTRNFSVSTRDAQGLLQSRLFLGHDRLELNVGRFEVRDS 172
           ++D L  S+I+SR GQPISIES+RNFS++TRD  G++++ LFLGHD+ E     F + D+
Sbjct: 194 IMDMLRASTIRSRHGQPISIESSRNFSINTRDPNGMIENHLFLGHDKFECLSAGFRINDT 253

Query: 173 RGALLLGAGQDSVTIGADTLTVSSSAGVTLNTAVQTSLVKAPPAKPLVLESPTRSLEMHA 232
            G  L    +D VTIGA  L +    G     +VQT  V+A P + L LESPTR LEM A
Sbjct: 254 NGRSLFSVNRDEVTIGAHALRIDGEGGAVFRESVQTPHVRAEPGRELRLESPTRQLEMTA 313

Query: 233 AQNIALESRAGDISASCLTTFRLRSIAGSIRLDAPSIYMXXXXXXXXXXXXXQHPHDPHH 292
           A++I L+SRAG I    L   + R++ GS+RL++  I M                 D H 
Sbjct: 314 AKDINLQSRAGGIEVVALEDVKFRALDGSLRLESSKILMPNLRTAQPPILGTAQSRD-HM 372

Query: 293 QNIYQLCACANGKLFLAPPHGICAAREESLICR 325
             ++QLCAC+NGKLFLA PH ICA  ++S +CR
Sbjct: 373 HRVFQLCACSNGKLFLAAPHSICAG-DDSTVCR 404


>AE014298-251|AAF45663.1|  404|Drosophila melanogaster CG14808-PA
           protein.
          Length = 404

 Score =  270 bits (661), Expect = 2e-72
 Identities = 129/273 (47%), Positives = 176/273 (64%), Gaps = 2/273 (0%)

Query: 53  VGIYGWRKKCLYILVIALMFMMIINLALTLWVLKVLDFNSEGMGQLRIVPXXXXXXXXAL 112
           +G+ GWRKKCLY L++ LM ++I NL LTLW+LKV++F++EGMGQL+IVP        A+
Sbjct: 134 LGLIGWRKKCLYTLLLLLMLLIITNLVLTLWILKVMEFSTEGMGQLKIVPGGIQLSGQAI 193

Query: 113 VLDSLFTSSIKSRRGQPISIESTRNFSVSTRDAQGLLQSRLFLGHDRLELNVGRFEVRDS 172
           ++D L  S+I+SR GQPISIES+RNFS++TRD  G++++ LFLGHD+ E     F + D+
Sbjct: 194 IMDMLRASTIRSRHGQPISIESSRNFSINTRDPNGMIENHLFLGHDKFECLSAGFRINDT 253

Query: 173 RGALLLGAGQDSVTIGADTLTVSSSAGVTLNTAVQTSLVKAPPAKPLVLESPTRSLEMHA 232
            G  L    +D VTIGA  L +    G     +VQT  V+A P + L LESPTR LEM A
Sbjct: 254 NGRSLFSVNRDEVTIGAHALRIDGEGGAVFRESVQTPHVRAEPGRELRLESPTRQLEMTA 313

Query: 233 AQNIALESRAGDISASCLTTFRLRSIAGSIRLDAPSIYMXXXXXXXXXXXXXQHPHDPHH 292
           A++I L+SRAG I    L   + R++ GS+RL++  I M                 D H 
Sbjct: 314 AKDINLQSRAGGIEVVALEDVKFRALDGSLRLESSKILMPNLRTAQPPILGTAQSRD-HM 372

Query: 293 QNIYQLCACANGKLFLAPPHGICAAREESLICR 325
             ++QLCAC+NGKLFLA PH ICA  ++S +CR
Sbjct: 373 HRVFQLCACSNGKLFLAAPHSICAG-DDSTVCR 404


>BT029112-1|ABJ17045.1|  504|Drosophila melanogaster IP14966p
           protein.
          Length = 504

 Score = 35.9 bits (79), Expect = 0.076
 Identities = 24/84 (28%), Positives = 34/84 (40%)

Query: 162 LNVGRFEVRDSRGALLLGAGQDSVTIGADTLTVSSSAGVTLNTAVQTSLVKAPPAKPLVL 221
           L V   ++ DS       +G+   T  A TLTV      +L+ A   S   APP  P VL
Sbjct: 113 LRVDDLQLSDSGTYTCTASGERGETSWAATLTVEKPGSTSLHRAADPSTYPAPPGTPKVL 172

Query: 222 ESPTRSLEMHAAQNIALESRAGDI 245
                S+ +  A++       G I
Sbjct: 173 NVSRTSISLRWAKSQEKPGAVGPI 196


>AF040989-1|AAC38849.1| 1395|Drosophila melanogaster roundabout 1
           protein.
          Length = 1395

 Score = 35.9 bits (79), Expect = 0.076
 Identities = 24/84 (28%), Positives = 34/84 (40%)

Query: 162 LNVGRFEVRDSRGALLLGAGQDSVTIGADTLTVSSSAGVTLNTAVQTSLVKAPPAKPLVL 221
           L V   ++ DS       +G+   T  A TLTV      +L+ A   S   APP  P VL
Sbjct: 499 LRVDDLQLSDSGTYTCTASGERGETSWAATLTVEKPGSTSLHRAADPSTYPAPPGTPKVL 558

Query: 222 ESPTRSLEMHAAQNIALESRAGDI 245
                S+ +  A++       G I
Sbjct: 559 NVSRTSISLRWAKSQEKPGAVGPI 582


>AE013599-3446|AAF46887.1| 1395|Drosophila melanogaster CG13521-PA,
           isoform A protein.
          Length = 1395

 Score = 35.9 bits (79), Expect = 0.076
 Identities = 24/84 (28%), Positives = 34/84 (40%)

Query: 162 LNVGRFEVRDSRGALLLGAGQDSVTIGADTLTVSSSAGVTLNTAVQTSLVKAPPAKPLVL 221
           L V   ++ DS       +G+   T  A TLTV      +L+ A   S   APP  P VL
Sbjct: 499 LRVDDLQLSDSGTYTCTASGERGETSWAATLTVEKPGSTSLHRAADPSTYPAPPGTPKVL 558

Query: 222 ESPTRSLEMHAAQNIALESRAGDI 245
                S+ +  A++       G I
Sbjct: 559 NVSRTSISLRWAKSQEKPGAVGPI 582


>AE013599-3445|AAM71113.2| 1429|Drosophila melanogaster CG13521-PB,
           isoform B protein.
          Length = 1429

 Score = 35.9 bits (79), Expect = 0.076
 Identities = 24/84 (28%), Positives = 34/84 (40%)

Query: 162 LNVGRFEVRDSRGALLLGAGQDSVTIGADTLTVSSSAGVTLNTAVQTSLVKAPPAKPLVL 221
           L V   ++ DS       +G+   T  A TLTV      +L+ A   S   APP  P VL
Sbjct: 533 LRVDDLQLSDSGTYTCTASGERGETSWAATLTVEKPGSTSLHRAADPSTYPAPPGTPKVL 592

Query: 222 ESPTRSLEMHAAQNIALESRAGDI 245
                S+ +  A++       G I
Sbjct: 593 NVSRTSISLRWAKSQEKPGAVGPI 616


>AE014296-2119|AAS65016.1|  750|Drosophila melanogaster CG5620-PB,
           isoform B protein.
          Length = 750

 Score = 31.1 bits (67), Expect = 2.2
 Identities = 24/69 (34%), Positives = 34/69 (49%), Gaps = 3/69 (4%)

Query: 169 VRDSRGALLLGAGQDSVTIGADTLTVSSSAGVTLNTAVQTSLVKAPPAKPLVLESPTRSL 228
           V  +  A+  GA   +   G  T   SSSA  T  T+V  SL  APP  PL    P+ +L
Sbjct: 522 VAAAAAAVASGASGTNTGTGTGTGGSSSSATTTAPTSVSVSLATAPP--PLAPRRPS-TL 578

Query: 229 EMHAAQNIA 237
           ++ A+  I+
Sbjct: 579 QLQASGAIS 587


>AE014296-2118|AAF49939.2|  750|Drosophila melanogaster CG5620-PA,
           isoform A protein.
          Length = 750

 Score = 31.1 bits (67), Expect = 2.2
 Identities = 24/69 (34%), Positives = 34/69 (49%), Gaps = 3/69 (4%)

Query: 169 VRDSRGALLLGAGQDSVTIGADTLTVSSSAGVTLNTAVQTSLVKAPPAKPLVLESPTRSL 228
           V  +  A+  GA   +   G  T   SSSA  T  T+V  SL  APP  PL    P+ +L
Sbjct: 522 VAAAAAAVASGASGTNTGTGTGTGGSSSSATTTAPTSVSVSLATAPP--PLAPRRPS-TL 578

Query: 229 EMHAAQNIA 237
           ++ A+  I+
Sbjct: 579 QLQASGAIS 587


>AF177386-1|AAD51369.1| 3584|Drosophila melanogaster huntingtin
           homolog protein.
          Length = 3584

 Score = 29.9 bits (64), Expect = 5.0
 Identities = 18/57 (31%), Positives = 31/57 (54%), Gaps = 1/57 (1%)

Query: 170 RDSRGALLLGAGQDSVTIGADTLTVSSSAGVTLN-TAVQTSLVKAPPAKPLVLESPT 225
           R S G+    +   S    AD     S+A +TL+ T++ +S ++ P  +PL+ E+PT
Sbjct: 660 RQSSGSKSTPSKSASTPAPADKSDAISAASLTLSLTSLASSNLEPPERQPLIAETPT 716


>AF147779-1|AAF03256.1| 3583|Drosophila melanogaster Huntington
           disease protein homolog protein.
          Length = 3583

 Score = 29.9 bits (64), Expect = 5.0
 Identities = 18/57 (31%), Positives = 31/57 (54%), Gaps = 1/57 (1%)

Query: 170 RDSRGALLLGAGQDSVTIGADTLTVSSSAGVTLN-TAVQTSLVKAPPAKPLVLESPT 225
           R S G+    +   S    AD     S+A +TL+ T++ +S ++ P  +PL+ E+PT
Sbjct: 660 RQSSGSKSTPSKSASTPAPADKSDAISAASLTLSLTSLASSNLEPPERQPLIAETPT 716


>AF146362-1|AAF03255.1| 3583|Drosophila melanogaster Huntington
           disease protein homolog protein.
          Length = 3583

 Score = 29.9 bits (64), Expect = 5.0
 Identities = 18/57 (31%), Positives = 31/57 (54%), Gaps = 1/57 (1%)

Query: 170 RDSRGALLLGAGQDSVTIGADTLTVSSSAGVTLN-TAVQTSLVKAPPAKPLVLESPT 225
           R S G+    +   S    AD     S+A +TL+ T++ +S ++ P  +PL+ E+PT
Sbjct: 660 RQSSGSKSTPSKSASTPAPADKSDAISAASLTLSLTSLASSNLEPPERQPLIAETPT 716


>AE014297-4258|AAF56808.1| 3583|Drosophila melanogaster CG9995-PA
           protein.
          Length = 3583

 Score = 29.9 bits (64), Expect = 5.0
 Identities = 18/57 (31%), Positives = 31/57 (54%), Gaps = 1/57 (1%)

Query: 170 RDSRGALLLGAGQDSVTIGADTLTVSSSAGVTLN-TAVQTSLVKAPPAKPLVLESPT 225
           R S G+    +   S    AD     S+A +TL+ T++ +S ++ P  +PL+ E+PT
Sbjct: 660 RQSSGSKSTPSKSASTPAPADKSDAISAASLTLSLTSLASSNLEPPERQPLIAETPT 716


  Database: fruitfly
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 24,830,863
  Number of sequences in database:  52,641
  
Lambda     K      H
   0.321    0.136    0.403 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,257,091
Number of Sequences: 52641
Number of extensions: 518877
Number of successful extensions: 1698
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 1686
Number of HSP's gapped (non-prelim): 15
length of query: 325
length of database: 24,830,863
effective HSP length: 85
effective length of query: 240
effective length of database: 20,356,378
effective search space: 4885530720
effective search space used: 4885530720
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 62 (29.1 bits)