Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001224-TA|BGIBMGA001224-PA|IPR006875|Sarcoglycan complex
subunit protein
(325 letters)
Database: celegans
27,539 sequences; 12,573,161 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z68314-8|CAA92663.1| 334|Caenorhabditis elegans Hypothetical pr... 154 9e-38
AF099925-13|AAC69503.2| 287|Caenorhabditis elegans Hypothetical... 33 0.36
AC024818-2|AAF60781.1| 302|Caenorhabditis elegans Temporarily a... 32 0.48
AC084158-13|AAK68570.1| 337|Caenorhabditis elegans Hypothetical... 31 0.84
Z68118-7|CAA92184.2| 573|Caenorhabditis elegans Hypothetical pr... 29 5.9
AF187013-1|AAG35183.1| 573|Caenorhabditis elegans nicotinic ace... 29 5.9
AF098500-3|ABD94103.1| 774|Caenorhabditis elegans Temporarily a... 29 5.9
AF098500-2|AAC67399.2| 996|Caenorhabditis elegans Temporarily a... 29 5.9
X83887-1|CAA58764.1| 498|Caenorhabditis elegans alpha-1 subunit... 28 7.8
AY523511-1|AAR98633.1| 498|Caenorhabditis elegans acetylcholine... 28 7.8
AF040645-8|AAB94982.1| 292|Caenorhabditis elegans Hypothetical ... 28 7.8
AF022973-7|AAN84815.1| 480|Caenorhabditis elegans Acetylcholine... 28 7.8
AF022973-6|AAC25796.1| 498|Caenorhabditis elegans Acetylcholine... 28 7.8
>Z68314-8|CAA92663.1| 334|Caenorhabditis elegans Hypothetical
protein F07H5.2 protein.
Length = 334
Score = 154 bits (373), Expect = 9e-38
Identities = 88/268 (32%), Positives = 139/268 (51%), Gaps = 12/268 (4%)
Query: 51 FKVGIYGWRKKCLYILVIALMFMMIINLALTLWVLKVLDFNSEGMGQLRIVPXXXXXXXX 110
++VGIYGWRK+ LY ++ L +++NL+LT W++ VLDF+ +G+G L+I
Sbjct: 71 YRVGIYGWRKRFLYTFILILAIGIVLNLSLTFWIMSVLDFSPDGIGTLKIEDDGIRVEGR 130
Query: 111 ALVLDSLFTSSIKSRRGQPISIESTRNFSVSTRDAQGLLQSRLFLGHD-RLELNVGRFEV 169
A + S + + + ++++S R ++ R G + S+ L + + ++ RFEV
Sbjct: 131 AQFDRPVHFSQLSTLDEETLTVDSFRGVNLQARKPNGDVASKFSLMPEGKAQMTCDRFEV 190
Query: 170 RDSRGALLLGAGQDSVTIGADTLTVSSSAGVTLNTAVQTSLVKAPPAKPLVLESPTRSLE 229
D LL A D + + + L + G A+QTS V+ P PL LESPTRS+
Sbjct: 191 FDEDQKLLFFADSDEIGLKLENLRILEDGGSVFEGAIQTSSVRPQPDSPLRLESPTRSVS 250
Query: 230 MHAAQNIALESRAGDISASCLTTFRLRSIAGSIRLDAPSIYMXXXXXXXXXXXXXQHPHD 289
+ AAQ+I + + AG++S + L + S G IRL++ SIYM D
Sbjct: 251 VDAAQDIEILAAAGEVSVNSLLDISISSKQGEIRLESSSIYMEKLARS-----------D 299
Query: 290 PHHQNIYQLCACANGKLFLAPPHGICAA 317
Q+C C NG+LFLA P+ C A
Sbjct: 300 GRGSPQTQVCVCHNGRLFLAAPNADCRA 327
>AF099925-13|AAC69503.2| 287|Caenorhabditis elegans Hypothetical
protein K01A2.1 protein.
Length = 287
Score = 32.7 bits (71), Expect = 0.36
Identities = 17/59 (28%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
Query: 41 DSIRNSYNSQFKVGIYGWRKKCLYILVIALMFMMIINLALTLWVLKVLDFNSEGMGQLR 99
+++ NS + G+ R I + L + +I LAL +W++ L NS G+ LR
Sbjct: 11 ENVGNSIGDEV-TGLRAKRLIATLICLFVLFIISLITLALNIWIISTLRMNSNGVPFLR 68
>AC024818-2|AAF60781.1| 302|Caenorhabditis elegans Temporarily
assigned gene nameprotein 262 protein.
Length = 302
Score = 32.3 bits (70), Expect = 0.48
Identities = 16/39 (41%), Positives = 21/39 (53%)
Query: 181 GQDSVTIGADTLTVSSSAGVTLNTAVQTSLVKAPPAKPL 219
G D+ TI A T SSA + +Q SL+ APP P+
Sbjct: 36 GYDNATISAGPTTSESSAATSSAQVIQPSLLAAPPFIPI 74
>AC084158-13|AAK68570.1| 337|Caenorhabditis elegans Hypothetical
protein Y69A2AR.25 protein.
Length = 337
Score = 31.5 bits (68), Expect = 0.84
Identities = 23/91 (25%), Positives = 35/91 (38%), Gaps = 1/91 (1%)
Query: 162 LNVGRFEVRDSRGALLLGAGQDSVTIGADTLTVSSSAGVTLNTAVQTSLVKAPPAKPLVL 221
L + FE RD R L G G D + AD T T TS+ K+ +
Sbjct: 246 LCIDEFEFRDLRCPRLSGEGCDK-PVDADCTTTPEPTTTVTTTFPTTSMKKSNSKLDVAT 304
Query: 222 ESPTRSLEMHAAQNIALESRAGDISASCLTT 252
+P + + Q+ + G +SA + T
Sbjct: 305 SAPVEQTSLQSHQSSIISLSIGIVSAFVIFT 335
>Z68118-7|CAA92184.2| 573|Caenorhabditis elegans Hypothetical
protein R01E6.4 protein.
Length = 573
Score = 28.7 bits (61), Expect = 5.9
Identities = 19/58 (32%), Positives = 30/58 (51%), Gaps = 4/58 (6%)
Query: 8 QQNGGIDDLRIPYADKITPEPILHNNAGRDTKPD-SIRNSYNSQFKVGIYGWRKKCLY 64
++ GG+ L IP TP+ +L+NNA D PD +I F+ +Y W+ +Y
Sbjct: 104 EKYGGLKTLHIPSDFIWTPDLVLYNNAAGD--PDITILTDALVTFEGNVY-WQPPAIY 158
>AF187013-1|AAG35183.1| 573|Caenorhabditis elegans nicotinic
acetylcholine receptor-like subunit ACR-12 protein.
Length = 573
Score = 28.7 bits (61), Expect = 5.9
Identities = 19/58 (32%), Positives = 30/58 (51%), Gaps = 4/58 (6%)
Query: 8 QQNGGIDDLRIPYADKITPEPILHNNAGRDTKPD-SIRNSYNSQFKVGIYGWRKKCLY 64
++ GG+ L IP TP+ +L+NNA D PD +I F+ +Y W+ +Y
Sbjct: 104 EKYGGLKTLHIPSDFIWTPDLVLYNNAAGD--PDITILTDALVTFEGNVY-WQPPAIY 158
>AF098500-3|ABD94103.1| 774|Caenorhabditis elegans Temporarily
assigned gene nameprotein 343, isoform b protein.
Length = 774
Score = 28.7 bits (61), Expect = 5.9
Identities = 13/23 (56%), Positives = 17/23 (73%), Gaps = 1/23 (4%)
Query: 14 DDLRIPYADKITPEPILHNNAGR 36
DD+R YAD+ TP P+LH+ A R
Sbjct: 218 DDVR-HYADETTPPPVLHDVADR 239
>AF098500-2|AAC67399.2| 996|Caenorhabditis elegans Temporarily
assigned gene nameprotein 343, isoform a protein.
Length = 996
Score = 28.7 bits (61), Expect = 5.9
Identities = 13/23 (56%), Positives = 17/23 (73%), Gaps = 1/23 (4%)
Query: 14 DDLRIPYADKITPEPILHNNAGR 36
DD+R YAD+ TP P+LH+ A R
Sbjct: 440 DDVR-HYADETTPPPVLHDVADR 461
>X83887-1|CAA58764.1| 498|Caenorhabditis elegans alpha-1 subunit of
nicotinic acetylcholinereceptor protein.
Length = 498
Score = 28.3 bits (60), Expect = 7.8
Identities = 17/56 (30%), Positives = 26/56 (46%), Gaps = 3/56 (5%)
Query: 3 VWGVKQQNGGIDDLRIPYADKITPEPILHNNAGRDTKPDSIRNSYNSQFKVGIYGW 58
VW K + G I D+R P P+ +L+N+ DT DS + + G+ W
Sbjct: 85 VWD-KAEYGNITDVRFPAGKIWKPDVLLYNSV--DTNFDSTYQTNMIVYSTGLVHW 137
>AY523511-1|AAR98633.1| 498|Caenorhabditis elegans acetylcholine
receptor (57.1 kD)alternative variant 1 protein.
Length = 498
Score = 28.3 bits (60), Expect = 7.8
Identities = 17/56 (30%), Positives = 26/56 (46%), Gaps = 3/56 (5%)
Query: 3 VWGVKQQNGGIDDLRIPYADKITPEPILHNNAGRDTKPDSIRNSYNSQFKVGIYGW 58
VW K + G I D+R P P+ +L+N+ DT DS + + G+ W
Sbjct: 85 VWD-KAEYGNITDVRFPAGKIWKPDVLLYNSV--DTNFDSTYQTNMIVYSTGLVHW 137
>AF040645-8|AAB94982.1| 292|Caenorhabditis elegans Hypothetical
protein F52C6.4 protein.
Length = 292
Score = 28.3 bits (60), Expect = 7.8
Identities = 10/29 (34%), Positives = 19/29 (65%)
Query: 121 SIKSRRGQPISIESTRNFSVSTRDAQGLL 149
S+K+ G+ I++E+ +N RD QG++
Sbjct: 62 SVKTSTGKTITVEAPKNVKTEVRDKQGVV 90
>AF022973-7|AAN84815.1| 480|Caenorhabditis elegans Acetylcholine
receptor protein16, isoform b protein.
Length = 480
Score = 28.3 bits (60), Expect = 7.8
Identities = 17/56 (30%), Positives = 26/56 (46%), Gaps = 3/56 (5%)
Query: 3 VWGVKQQNGGIDDLRIPYADKITPEPILHNNAGRDTKPDSIRNSYNSQFKVGIYGW 58
VW K + G I D+R P P+ +L+N+ DT DS + + G+ W
Sbjct: 85 VWD-KAEYGNITDVRFPAGKIWKPDVLLYNSV--DTNFDSTYQTNMIVYSTGLVHW 137
>AF022973-6|AAC25796.1| 498|Caenorhabditis elegans Acetylcholine
receptor protein16, isoform a protein.
Length = 498
Score = 28.3 bits (60), Expect = 7.8
Identities = 17/56 (30%), Positives = 26/56 (46%), Gaps = 3/56 (5%)
Query: 3 VWGVKQQNGGIDDLRIPYADKITPEPILHNNAGRDTKPDSIRNSYNSQFKVGIYGW 58
VW K + G I D+R P P+ +L+N+ DT DS + + G+ W
Sbjct: 85 VWD-KAEYGNITDVRFPAGKIWKPDVLLYNSV--DTNFDSTYQTNMIVYSTGLVHW 137
Database: celegans
Posted date: Oct 5, 2007 11:13 AM
Number of letters in database: 12,573,161
Number of sequences in database: 27,539
Lambda K H
0.321 0.136 0.403
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,940,231
Number of Sequences: 27539
Number of extensions: 244912
Number of successful extensions: 575
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 568
Number of HSP's gapped (non-prelim): 14
length of query: 325
length of database: 12,573,161
effective HSP length: 82
effective length of query: 243
effective length of database: 10,314,963
effective search space: 2506536009
effective search space used: 2506536009
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 60 (28.3 bits)
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