Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001224-TA|BGIBMGA001224-PA|IPR006875|Sarcoglycan complex
subunit protein
(325 letters)
Database: bee
429 sequences; 140,377 total letters
Searching.....................................................done
Score E
Sequences producing significant alignments: (bits) Value
DQ026031-1|AAY87890.1| 601|Apis mellifera nicotinic acetylcholi... 26 0.51
AY569781-1|AAS75781.1| 461|Apis mellifera neuronal nicotinic ac... 25 0.68
AY500239-1|AAR92109.1| 555|Apis mellifera neuronal nicotinic ac... 25 0.68
DQ011228-1|AAY63897.1| 486|Apis mellifera Amt-2-like protein pr... 25 1.2
DQ026032-1|AAY87891.1| 566|Apis mellifera nicotinic acetylcholi... 24 1.6
AF514804-1|AAM51823.1| 537|Apis mellifera neuronal nicotinic ac... 24 1.6
DQ026038-1|AAY87897.1| 520|Apis mellifera nicotinic acetylcholi... 23 2.7
DQ026033-1|AAY87892.1| 569|Apis mellifera nicotinic acetylcholi... 23 2.7
AY540846-1|AAS48080.1| 541|Apis mellifera neuronal nicotinic ac... 23 2.7
AY375535-1|AAQ82648.1| 147|Apis mellifera doublesex protein. 23 2.7
DQ026034-1|AAY87893.1| 569|Apis mellifera nicotinic acetylcholi... 23 4.8
DQ015969-1|AAY81926.1| 397|Apis mellifera stargazin related pro... 23 4.8
AJ849455-1|CAH60991.1| 366|Apis mellifera twist protein protein. 22 6.3
EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholi... 22 8.3
EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholi... 22 8.3
EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholi... 22 8.3
EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholi... 22 8.3
EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholi... 22 8.3
EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholi... 22 8.3
DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholi... 22 8.3
DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholi... 22 8.3
>DQ026031-1|AAY87890.1| 601|Apis mellifera nicotinic acetylcholine
receptor alpha1subunit protein.
Length = 601
Score = 25.8 bits (54), Expect = 0.51
Identities = 10/24 (41%), Positives = 15/24 (62%)
Query: 11 GGIDDLRIPYADKITPEPILHNNA 34
GG+D L +P P+ +L+NNA
Sbjct: 90 GGVDTLHVPSEHIWLPDIVLYNNA 113
>AY569781-1|AAS75781.1| 461|Apis mellifera neuronal nicotinic
acetylcholine Apisa7-2 subunit protein.
Length = 461
Score = 25.4 bits (53), Expect = 0.68
Identities = 11/23 (47%), Positives = 15/23 (65%)
Query: 12 GIDDLRIPYADKITPEPILHNNA 34
GI +R+PY P+ IL+NNA
Sbjct: 76 GIRVIRVPYNRVWRPDTILYNNA 98
>AY500239-1|AAR92109.1| 555|Apis mellifera neuronal nicotinic
acetylcholine receptoralpha7-1 protein.
Length = 555
Score = 25.4 bits (53), Expect = 0.68
Identities = 12/31 (38%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Query: 4 WGVKQQNGGIDDLRIPYADKITPEPILHNNA 34
W V GG+ DLRIP P+ +++N+A
Sbjct: 87 WNVSDY-GGVRDLRIPPHRLWKPDVLMYNSA 116
>DQ011228-1|AAY63897.1| 486|Apis mellifera Amt-2-like protein
protein.
Length = 486
Score = 24.6 bits (51), Expect = 1.2
Identities = 15/44 (34%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Query: 56 YGWRKKCLYILVIALMFMMIINLALTLWVLKVLDFNSEGMGQLR 99
+GW+ CL I+VIAL+ +++ + L +L SE + LR
Sbjct: 397 FGWQMICL-IVVIALVSIIMYIAFIILQYAGLLRNRSEYLNHLR 439
>DQ026032-1|AAY87891.1| 566|Apis mellifera nicotinic acetylcholine
receptor alpha3subunit protein.
Length = 566
Score = 24.2 bits (50), Expect = 1.6
Identities = 11/31 (35%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Query: 4 WGVKQQNGGIDDLRIPYADKITPEPILHNNA 34
W K+ GG++ L +P P+ +L+NNA
Sbjct: 88 WDPKEY-GGVEMLHVPSDHIWRPDIVLYNNA 117
>AF514804-1|AAM51823.1| 537|Apis mellifera neuronal nicotinic
acetylcholine receptoralpha-3 protein.
Length = 537
Score = 24.2 bits (50), Expect = 1.6
Identities = 9/27 (33%), Positives = 18/27 (66%)
Query: 8 QQNGGIDDLRIPYADKITPEPILHNNA 34
++ GG++ L +P + P+ +L+NNA
Sbjct: 100 EEYGGVEMLYVPSENIWLPDIVLYNNA 126
>DQ026038-1|AAY87897.1| 520|Apis mellifera nicotinic acetylcholine
receptor beta1subunit protein.
Length = 520
Score = 23.4 bits (48), Expect = 2.7
Identities = 13/25 (52%), Positives = 17/25 (68%), Gaps = 2/25 (8%)
Query: 11 GGIDDLRIPYADKI-TPEPILHNNA 34
GGI LR+P DK+ P+ +L NNA
Sbjct: 96 GGIGVLRLP-PDKVWKPDIVLFNNA 119
>DQ026033-1|AAY87892.1| 569|Apis mellifera nicotinic acetylcholine
receptor alpha4subunit protein.
Length = 569
Score = 23.4 bits (48), Expect = 2.7
Identities = 15/61 (24%), Positives = 28/61 (45%), Gaps = 3/61 (4%)
Query: 4 WGVKQQNGGIDDLRIPYADKITPEPILHNNAGRDTKPDSIRNSYNSQFKVGIYGWRKKCL 63
W K+ GG+ L +P P+ +L+NNA D + + + + G+ W+ +
Sbjct: 92 WEPKEY-GGVKMLHVPSDHIWRPDIVLYNNA--DGNFEVTLATKATIYHQGLVEWKPPAI 148
Query: 64 Y 64
Y
Sbjct: 149 Y 149
>AY540846-1|AAS48080.1| 541|Apis mellifera neuronal nicotinic
acetylcholine receptorApisa2 subunit protein.
Length = 541
Score = 23.4 bits (48), Expect = 2.7
Identities = 9/24 (37%), Positives = 15/24 (62%)
Query: 11 GGIDDLRIPYADKITPEPILHNNA 34
GG+ +L +P P+ +L+NNA
Sbjct: 90 GGVTELYVPSEHIWLPDIVLYNNA 113
>AY375535-1|AAQ82648.1| 147|Apis mellifera doublesex protein.
Length = 147
Score = 23.4 bits (48), Expect = 2.7
Identities = 12/47 (25%), Positives = 22/47 (46%)
Query: 194 VSSSAGVTLNTAVQTSLVKAPPAKPLVLESPTRSLEMHAAQNIALES 240
VSS + ++T S++ PP + L P ++ H Q + E+
Sbjct: 76 VSSHSSNGIHTGFGGSIITIPPTRKLPPLHPHTAMVTHLPQTLTSEN 122
>DQ026034-1|AAY87893.1| 569|Apis mellifera nicotinic acetylcholine
receptor alpha4subunit protein.
Length = 569
Score = 22.6 bits (46), Expect = 4.8
Identities = 11/31 (35%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
Query: 4 WGVKQQNGGIDDLRIPYADKITPEPILHNNA 34
W K+ GG+ L +P P+ +L+NNA
Sbjct: 92 WEPKEY-GGVKMLHVPSDHIWRPDIVLYNNA 121
>DQ015969-1|AAY81926.1| 397|Apis mellifera stargazin related
protein STG-1 protein.
Length = 397
Score = 22.6 bits (46), Expect = 4.8
Identities = 11/40 (27%), Positives = 18/40 (45%)
Query: 172 SRGALLLGAGQDSVTIGADTLTVSSSAGVTLNTAVQTSLV 211
S G ++ GA S+ +GA+ G+ + SLV
Sbjct: 26 SAGGVVTGASGGSIVVGANNGGGGGGLGIASGLSAMLSLV 65
>AJ849455-1|CAH60991.1| 366|Apis mellifera twist protein protein.
Length = 366
Score = 22.2 bits (45), Expect = 6.3
Identities = 7/25 (28%), Positives = 14/25 (56%)
Query: 24 ITPEPILHNNAGRDTKPDSIRNSYN 48
+TP P ++++ G + P SY+
Sbjct: 141 LTPSPQMYSSGGEEITPRQSHQSYH 165
>EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic
acetylcholine receptor subunitalpha 6 transcript
variant 6 protein.
Length = 461
Score = 21.8 bits (44), Expect = 8.3
Identities = 9/28 (32%), Positives = 17/28 (60%)
Query: 7 KQQNGGIDDLRIPYADKITPEPILHNNA 34
+ + GG+ DLRI P+ +++N+A
Sbjct: 52 ESEYGGVKDLRITPNKLWKPDILMYNSA 79
>EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic
acetylcholine receptor subunitalpha 6 transcript
variant 5 protein.
Length = 461
Score = 21.8 bits (44), Expect = 8.3
Identities = 9/28 (32%), Positives = 17/28 (60%)
Query: 7 KQQNGGIDDLRIPYADKITPEPILHNNA 34
+ + GG+ DLRI P+ +++N+A
Sbjct: 52 ESEYGGVKDLRITPNKLWKPDILMYNSA 79
>EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic
acetylcholine receptor subunitalpha 6 transcript
variant 4 protein.
Length = 461
Score = 21.8 bits (44), Expect = 8.3
Identities = 9/28 (32%), Positives = 17/28 (60%)
Query: 7 KQQNGGIDDLRIPYADKITPEPILHNNA 34
+ + GG+ DLRI P+ +++N+A
Sbjct: 52 ESEYGGVKDLRITPNKLWKPDILMYNSA 79
>EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic
acetylcholine receptor subunitalpha 6 transcript
variant 3 protein.
Length = 461
Score = 21.8 bits (44), Expect = 8.3
Identities = 9/28 (32%), Positives = 17/28 (60%)
Query: 7 KQQNGGIDDLRIPYADKITPEPILHNNA 34
+ + GG+ DLRI P+ +++N+A
Sbjct: 52 ESEYGGVKDLRITPNKLWKPDILMYNSA 79
>EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic
acetylcholine receptor subunitalpha 6 transcript
variant 2 protein.
Length = 461
Score = 21.8 bits (44), Expect = 8.3
Identities = 9/28 (32%), Positives = 17/28 (60%)
Query: 7 KQQNGGIDDLRIPYADKITPEPILHNNA 34
+ + GG+ DLRI P+ +++N+A
Sbjct: 52 ESEYGGVKDLRITPNKLWKPDILMYNSA 79
>EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic
acetylcholine receptor subunitalpha 6 transcript
variant 1 protein.
Length = 461
Score = 21.8 bits (44), Expect = 8.3
Identities = 9/28 (32%), Positives = 17/28 (60%)
Query: 7 KQQNGGIDDLRIPYADKITPEPILHNNA 34
+ + GG+ DLRI P+ +++N+A
Sbjct: 52 ESEYGGVKDLRITPNKLWKPDILMYNSA 79
>DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 21.8 bits (44), Expect = 8.3
Identities = 9/28 (32%), Positives = 17/28 (60%)
Query: 7 KQQNGGIDDLRIPYADKITPEPILHNNA 34
+ + GG+ DLRI P+ +++N+A
Sbjct: 120 ESEYGGVKDLRITPNKLWKPDILMYNSA 147
>DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 21.8 bits (44), Expect = 8.3
Identities = 9/28 (32%), Positives = 17/28 (60%)
Query: 7 KQQNGGIDDLRIPYADKITPEPILHNNA 34
+ + GG+ DLRI P+ +++N+A
Sbjct: 120 ESEYGGVKDLRITPNKLWKPDILMYNSA 147
Database: bee
Posted date: Oct 5, 2007 11:13 AM
Number of letters in database: 140,377
Number of sequences in database: 429
Lambda K H
0.321 0.136 0.403
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 78,025
Number of Sequences: 429
Number of extensions: 2670
Number of successful extensions: 27
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 7
Number of HSP's gapped (non-prelim): 21
length of query: 325
length of database: 140,377
effective HSP length: 58
effective length of query: 267
effective length of database: 115,495
effective search space: 30837165
effective search space used: 30837165
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 44 (21.8 bits)
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