GeneModel BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001224-TA|BGIBMGA001224-PA|IPR006875|Sarcoglycan complex
subunit protein
         (325 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g46560.1 68415.m05808 transducin family protein / WD-40 repea...    31   1.0  
At3g49590.2 68416.m05420 expressed protein                             28   9.8  
At3g49590.1 68416.m05419 expressed protein                             28   9.8  

>At2g46560.1 68415.m05808 transducin family protein / WD-40 repeat
            family protein similar to CPY (GI:3096961) {Chironomus
            thummi}; contains Pfam PF00400: WD domain, G-beta repeat
            (8 copies, 3 weak)|9780477|gb|BE522499.1|BE522499
          Length = 2471

 Score = 31.1 bits (67), Expect = 1.0
 Identities = 18/55 (32%), Positives = 28/55 (50%), Gaps = 1/55 (1%)

Query: 113  VLDSLFTSSIKSRRGQPISIESTRNFSVSTRDAQGLLQSRLFLGHDRLELNVGRF 167
            VL  LF  S K  + +P+ +  +RNF      A  L  + + +G  +LEL +G F
Sbjct: 1280 VLAGLFKLS-KDEKDKPLVVFLSRNFQEEKNKAAALKNAYVLMGKHQLELAIGFF 1333


>At3g49590.2 68416.m05420 expressed protein 
          Length = 603

 Score = 27.9 bits (59), Expect = 9.8
 Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 1/50 (2%)

Query: 184 SVTIGADTLTVSSSAGVTLNTAVQTSLVKAPPAKPL-VLESPTRSLEMHA 232
           SVT  +D    +  A +TL   + T  V +P   P+    SP RS+E H+
Sbjct: 219 SVTYRSDLSDFNLGAHITLPPRIITDYVGSPATDPMRFFPSPGRSVEGHS 268


>At3g49590.1 68416.m05419 expressed protein 
          Length = 603

 Score = 27.9 bits (59), Expect = 9.8
 Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 1/50 (2%)

Query: 184 SVTIGADTLTVSSSAGVTLNTAVQTSLVKAPPAKPL-VLESPTRSLEMHA 232
           SVT  +D    +  A +TL   + T  V +P   P+    SP RS+E H+
Sbjct: 219 SVTYRSDLSDFNLGAHITLPPRIITDYVGSPATDPMRFFPSPGRSVEGHS 268


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.321    0.136    0.403 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,757,668
Number of Sequences: 28952
Number of extensions: 239388
Number of successful extensions: 523
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 521
Number of HSP's gapped (non-prelim): 4
length of query: 325
length of database: 12,070,560
effective HSP length: 81
effective length of query: 244
effective length of database: 9,725,448
effective search space: 2373009312
effective search space used: 2373009312
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 59 (27.9 bits)