Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001223-TA|BGIBMGA001223-PA|IPR014001|DEAD-like
helicases, N-terminal, IPR001650|Helicase, C-terminal,
IPR014021|Helicase superfamily 1 and 2 ATP-binding, IPR014014|DEAD-box
RNA helicase Q motif, IPR011545|DEAD/DEAH box helicase, N-terminal
(465 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_Q9UHL0 Cluster: ATP-dependent RNA helicase DDX25; n=111... 549 e-155
UniRef50_Q4S6B9 Cluster: Chromosome 9 SCAF14729, whole genome sh... 518 e-145
UniRef50_Q22308 Cluster: Putative uncharacterized protein; n=7; ... 414 e-114
UniRef50_P20449 Cluster: ATP-dependent RNA helicase DBP5; n=23; ... 384 e-105
UniRef50_Q54TF8 Cluster: DEAD-box RNA helicase; n=2; Dictyosteli... 370 e-101
UniRef50_A4V6K5 Cluster: DEAD box polypeptide 19 protein; n=3; P... 361 2e-98
UniRef50_A4RIF1 Cluster: ATP-dependent RNA helicase DBP5; n=7; A... 350 5e-95
UniRef50_Q5KBP5 Cluster: ATP-dependent RNA helicase DBP5; n=3; F... 335 1e-90
UniRef50_Q5CIF9 Cluster: DEAD-box RNA helicase; n=2; Cryptospori... 315 1e-84
UniRef50_Q014Y7 Cluster: RNA helicase-like protein; n=2; Ostreoc... 277 3e-73
UniRef50_Q4N9Q9 Cluster: DEAD box RNA helicase, putative; n=3; P... 268 2e-70
UniRef50_Q93ZG7 Cluster: DEAD-box ATP-dependent RNA helicase 38;... 263 6e-69
UniRef50_P38919 Cluster: Eukaryotic initiation factor 4A-III; n=... 260 6e-68
UniRef50_Q14240 Cluster: Eukaryotic initiation factor 4A-II; n=3... 257 4e-67
UniRef50_A2DVG1 Cluster: DEAD/DEAH box helicase family protein; ... 239 1e-61
UniRef50_Q10RI7 Cluster: DEAD-box ATP-dependent RNA helicase 38;... 238 2e-61
UniRef50_A0D232 Cluster: Chromosome undetermined scaffold_35, wh... 237 4e-61
UniRef50_A1U3D6 Cluster: DEAD/DEAH box helicase domain protein; ... 225 2e-57
UniRef50_A6N5Z1 Cluster: Helicase; n=7; Plasmodium|Rep: Helicase... 225 3e-57
UniRef50_Q8SSD2 Cluster: ATP-DEPENDENT RNA HELICASE INVOLVED IN ... 221 2e-56
UniRef50_Q6AMK6 Cluster: Probable ATP-dependent RNA helicase; n=... 219 1e-55
UniRef50_Q5KJI2 Cluster: ATP-dependent RNA helicase DHH1; n=4; D... 218 3e-55
UniRef50_Q3LWE1 Cluster: Translation initiation factor 4A2; n=1;... 217 4e-55
UniRef50_P39517 Cluster: ATP-dependent RNA helicase DHH1; n=103;... 217 5e-55
UniRef50_A2SQE1 Cluster: DEAD/DEAH box helicase domain protein; ... 217 7e-55
UniRef50_Q2NEZ7 Cluster: Predicted helicase; n=6; cellular organ... 214 5e-54
UniRef50_Q725W5 Cluster: ATP-dependent RNA helicase, DEAD/DEAH f... 213 1e-53
UniRef50_Q81VG0 Cluster: DEAD-box ATP-dependent RNA helicase ydb... 212 2e-53
UniRef50_A2EPG4 Cluster: DEAD/DEAH box helicase family protein; ... 211 3e-53
UniRef50_Q11UP8 Cluster: ATP-dependent RNA helicase; n=1; Cytoph... 210 8e-53
UniRef50_A6T3R2 Cluster: ATP-dependent RNA helicase; n=52; cellu... 209 1e-52
UniRef50_A4BET4 Cluster: DEAD/DEAH box helicase-like protein; n=... 208 3e-52
UniRef50_A5CVQ6 Cluster: ATP-dependent RNA helicase DeaD; n=2; s... 206 1e-51
UniRef50_Q8A2K2 Cluster: ATP-dependent RNA helicase; n=10; cellu... 206 1e-51
UniRef50_Q0AVQ9 Cluster: ATP-dependent RNA helicase; n=1; Syntro... 206 1e-51
UniRef50_Q9PGP6 Cluster: ATP-dependent RNA helicase; n=10; cellu... 204 4e-51
UniRef50_Q484Q1 Cluster: RNA helicase DeaD; n=1; Colwellia psych... 204 4e-51
UniRef50_A2TP65 Cluster: ATP-dependent RNA helicase, DEAD/DEAH b... 203 7e-51
UniRef50_P44586 Cluster: Cold-shock DEAD box protein A homolog; ... 203 9e-51
UniRef50_Q8XKJ8 Cluster: ATP-dependent RNA helicase; n=12; Clost... 202 1e-50
UniRef50_Q9SEV5 Cluster: RNA helicase; n=1; Guillardia theta|Rep... 202 1e-50
UniRef50_Q30SZ2 Cluster: DEAD/DEAH box helicase-like; n=1; Thiom... 202 2e-50
UniRef50_A6TUK6 Cluster: DEAD/DEAH box helicase domain protein; ... 202 2e-50
UniRef50_Q11039 Cluster: Cold-shock DEAD box protein A homolog; ... 200 5e-50
UniRef50_Q1QYG3 Cluster: DEAD/DEAH box helicase-like protein; n=... 200 8e-50
UniRef50_A7JLA3 Cluster: ATP-dependent RNA helicase; n=20; Franc... 198 3e-49
UniRef50_A0BEU9 Cluster: Chromosome undetermined scaffold_102, w... 198 3e-49
UniRef50_Q5NZY2 Cluster: ATP-dependent RNA helicase DeaD; n=18; ... 197 6e-49
UniRef50_Q3AX69 Cluster: DEAD/DEAH box helicase-like; n=15; Cyan... 197 6e-49
UniRef50_Q1MY97 Cluster: DEAD/DEAH box helicase-like protein; n=... 197 6e-49
UniRef50_Q5L3G9 Cluster: DEAD-box ATP-dependent RNA helicase ydb... 197 6e-49
UniRef50_Q14NT1 Cluster: Putative atp-dependent rna helicase pro... 196 8e-49
UniRef50_A6DIU5 Cluster: Probable ATP dependent RNA helicase; n=... 196 8e-49
UniRef50_Q5ZT20 Cluster: ATP-dependent RNA helicase; n=4; Legion... 196 1e-48
UniRef50_A6H0L1 Cluster: Probable ATP-dependent RNA helicase, DE... 196 1e-48
UniRef50_O26305 Cluster: ATP-dependent RNA helicase, eIF-4A fami... 195 2e-48
UniRef50_Q8SQM5 Cluster: ATP-dependent RNA helicase eIF4A; n=1; ... 195 2e-48
UniRef50_Q9KAA6 Cluster: ATP-dependent RNA helicase; n=5; Firmic... 195 2e-48
UniRef50_Q67NW1 Cluster: ATP-dependent RNA helicase; n=5; Firmic... 195 2e-48
UniRef50_A0V009 Cluster: DEAD/DEAH box helicase-like; n=1; Clost... 194 4e-48
UniRef50_Q8YXJ0 Cluster: ATP-dependent RNA helicase; n=11; Cyano... 194 5e-48
UniRef50_Q7UNV7 Cluster: ATP-dependent RNA helicase; n=2; Planct... 194 5e-48
UniRef50_Q3AFI3 Cluster: ATP-dependent RNA helicase, DEAD box fa... 194 5e-48
UniRef50_Q4IZ16 Cluster: DEAD/DEAH box helicase:Helicase, C-term... 194 5e-48
UniRef50_A6TTG0 Cluster: DEAD/DEAH box helicase domain protein; ... 193 7e-48
UniRef50_P96614 Cluster: DEAD-box ATP-dependent RNA helicase ydb... 193 7e-48
UniRef50_P0A9P8 Cluster: Cold-shock DEAD box protein A; n=54; Ga... 193 7e-48
UniRef50_Q8EZ11 Cluster: ATP-dependent RNA helicase; n=4; Leptos... 193 1e-47
UniRef50_Q5QY63 Cluster: ATP-dependent RNA helicase; n=3; Altero... 193 1e-47
UniRef50_Q1FMF9 Cluster: Helicase-like:DbpA, RNA-binding:DEAD/DE... 193 1e-47
UniRef50_Q185X0 Cluster: ATP-dependent RNA helicase; n=3; Clostr... 192 2e-47
UniRef50_A6DK15 Cluster: ATP-dependent RNA helicase, specific fo... 191 4e-47
UniRef50_O00148 Cluster: ATP-dependent RNA helicase DDX39; n=27;... 190 9e-47
UniRef50_Q6YPL1 Cluster: Superfamily II DNA and RNA helicase; n=... 189 2e-46
UniRef50_O83749 Cluster: ATP-dependent RNA helicase; n=2; Trepon... 188 2e-46
UniRef50_P42305 Cluster: ATP-dependent RNA helicase dbpA; n=9; F... 188 3e-46
UniRef50_UPI0000E87E35 Cluster: putative ATP-dependent RNA helic... 187 6e-46
UniRef50_A6GPV2 Cluster: Helicase; n=1; Limnobacter sp. MED105|R... 186 1e-45
UniRef50_A4FZ46 Cluster: DEAD/DEAH box helicase domain protein; ... 186 1e-45
UniRef50_Q31AC4 Cluster: DEAD/DEAH box helicase-like protein; n=... 186 1e-45
UniRef50_A7HKQ8 Cluster: DEAD/DEAH box helicase domain protein; ... 186 1e-45
UniRef50_Q81JK1 Cluster: ATP-dependent RNA helicase, DEAD/DEAH b... 185 3e-45
UniRef50_Q2FKY7 Cluster: DEAD/DEAH box helicase-like; n=1; Metha... 185 3e-45
UniRef50_Q8SQK9 Cluster: ATP-dependent RNA helicase DHH1; n=1; E... 185 3e-45
UniRef50_Q2LY23 Cluster: Superfamily II DNA and RNA helicases; n... 184 3e-45
UniRef50_P0C218 Cluster: Probable ATP-dependent RNA helicase DDX... 184 3e-45
UniRef50_Q6MN67 Cluster: ATP-dependent RNA helicase; n=3; Deltap... 184 4e-45
UniRef50_Q13838 Cluster: Spliceosome RNA helicase BAT1; n=55; Eu... 184 6e-45
UniRef50_Q5GZA1 Cluster: ATP-dependent RNA helicase; n=6; Xantho... 183 1e-44
UniRef50_Q9V3C4 Cluster: CG6539-PA; n=1; Drosophila melanogaster... 183 1e-44
UniRef50_Q0W8H7 Cluster: ATP-dependent RNA helicase; n=1; uncult... 183 1e-44
UniRef50_Q27268 Cluster: ATP-dependent RNA helicase WM6; n=82; E... 183 1e-44
UniRef50_Q9KLE2 Cluster: ATP-dependent RNA helicase DeaD; n=35; ... 182 1e-44
UniRef50_Q5QWG1 Cluster: ATP-dependent RNA helicase; n=1; Idioma... 182 1e-44
UniRef50_Q9UHI6 Cluster: Probable ATP-dependent RNA helicase DDX... 182 1e-44
UniRef50_Q7VFA9 Cluster: ATP-dependent RNA helicase DeaD; n=6; H... 182 2e-44
UniRef50_A6CFZ8 Cluster: ATP-dependent RNA helicase; n=1; Planct... 182 2e-44
UniRef50_A3ZXX1 Cluster: ATP-dependent RNA helicase; n=2; Planct... 181 4e-44
UniRef50_UPI000065E01D Cluster: Homolog of Brachydanio rerio "Eu... 180 5e-44
UniRef50_Q1N6E2 Cluster: ATP-dependent RNA helicase; n=1; Oceano... 180 5e-44
UniRef50_Q11TW3 Cluster: Possible ATP-dependent RNA helicase; n=... 180 7e-44
UniRef50_Q98RE0 Cluster: ATP-DEPENDENT RNA HELICASE; n=1; Mycopl... 180 1e-43
UniRef50_Q62IF8 Cluster: ATP-dependent RNA helicase RhlE; n=59; ... 180 1e-43
UniRef50_A6QC93 Cluster: ATP-independent RNA helicase DbpA; n=1;... 180 1e-43
UniRef50_Q23U16 Cluster: DEAD/DEAH box helicase family protein; ... 179 1e-43
UniRef50_Q31EF0 Cluster: ATP-dependent RNA helicase; n=1; Thiomi... 179 2e-43
UniRef50_A7BCL2 Cluster: Putative uncharacterized protein; n=1; ... 178 2e-43
UniRef50_A0RP33 Cluster: Putative ATP-dependent RNA helicase Rhl... 178 2e-43
UniRef50_P44701 Cluster: ATP-dependent RNA helicase srmB homolog... 178 2e-43
UniRef50_Q8EJQ5 Cluster: ATP-dependent RNA helicase rhlB; n=62; ... 178 2e-43
UniRef50_A7HDE9 Cluster: DEAD/DEAH box helicase domain protein; ... 177 4e-43
UniRef50_Q3SF48 Cluster: DEAD/DEAH box helicase; n=6; cellular o... 177 5e-43
UniRef50_Q6MN50 Cluster: ATP-dependent RNA helicase; n=1; Bdello... 177 7e-43
UniRef50_A3EUK2 Cluster: Superfamily II DNA and RNA helicase; n=... 176 9e-43
UniRef50_Q8F0Q7 Cluster: ATP-dependent RNA helicase; n=4; Leptos... 176 1e-42
UniRef50_A0BPV0 Cluster: Chromosome undetermined scaffold_12, wh... 176 1e-42
UniRef50_Q7A4G0 Cluster: Probable DEAD-box ATP-dependent RNA hel... 175 2e-42
UniRef50_Q56XG6 Cluster: DEAD-box ATP-dependent RNA helicase 15;... 175 2e-42
UniRef50_Q11U28 Cluster: ATP-dependent RNA helicase protein; n=4... 175 3e-42
UniRef50_A6Q8Y9 Cluster: ATP-dependent RNA helicase, DEAD-box fa... 175 3e-42
UniRef50_Q89M45 Cluster: ATP-dependent RNA helicase; n=29; cellu... 174 4e-42
UniRef50_Q5FS73 Cluster: ATP-dependent RNA helicase; n=2; Glucon... 174 4e-42
UniRef50_A6NQG8 Cluster: Putative uncharacterized protein; n=2; ... 174 4e-42
UniRef50_A0Z0M4 Cluster: ATP-dependent RNA helicase; n=1; marine... 174 5e-42
UniRef50_Q6D2K3 Cluster: ATP-independent RNA helicase; n=6; Prot... 173 6e-42
UniRef50_Q64VR8 Cluster: ATP-dependent RNA helicase DeaD; n=14; ... 173 6e-42
UniRef50_Q12B10 Cluster: DEAD/DEAH box helicase-like; n=13; Prot... 173 6e-42
UniRef50_Q2LZJ8 Cluster: GA19670-PA; n=1; Drosophila pseudoobscu... 173 6e-42
UniRef50_Q5NN72 Cluster: DNA and RNA helicase; n=3; Sphingomonad... 173 8e-42
UniRef50_A5G1U8 Cluster: DEAD/DEAH box helicase domain protein; ... 173 1e-41
UniRef50_A4BHZ9 Cluster: ATP-dependent RNA helicase; n=1; Reinek... 173 1e-41
UniRef50_A0LLL9 Cluster: DEAD/DEAH box helicase domain protein; ... 173 1e-41
UniRef50_Q88NB7 Cluster: ATP-dependent RNA helicase rhlB; n=18; ... 173 1e-41
UniRef50_A4M6V6 Cluster: DEAD/DEAH box helicase domain protein; ... 172 1e-41
UniRef50_P25888 Cluster: Putative ATP-dependent RNA helicase rhl... 172 1e-41
UniRef50_Q7VQL9 Cluster: Cold-shock DEAD-box protein A, inducibl... 172 2e-41
UniRef50_O07897 Cluster: Heat resistant RNA dependent ATPase; n=... 172 2e-41
UniRef50_A7U5W6 Cluster: DEAD-box helicase 1; n=8; Aconoidasida|... 172 2e-41
UniRef50_Q9HXE5 Cluster: ATP-dependent RNA helicase rhlB; n=22; ... 171 3e-41
UniRef50_Q81QF0 Cluster: ATP-dependent RNA helicase, DEAD/DEAH b... 171 4e-41
UniRef50_Q26CN9 Cluster: ATP-dependent RNA helicase; n=1; Flavob... 171 4e-41
UniRef50_P32892 Cluster: ATP-dependent RNA helicase DRS1; n=13; ... 171 4e-41
UniRef50_Q6MBR0 Cluster: Putative ATP-dependent RNA helicase; n=... 170 6e-41
UniRef50_A6QHA1 Cluster: ATP-dependent RNA helicase DEAD/DEAH bo... 170 6e-41
UniRef50_A4B5L7 Cluster: ATP-dependent RNA helicase DbpA; n=3; P... 170 6e-41
UniRef50_A2U1Q9 Cluster: ATP-dependent RNA helicase, DEAD/DEAH b... 170 8e-41
UniRef50_A0KZD5 Cluster: DEAD/DEAH box helicase domain protein; ... 170 8e-41
UniRef50_Q2J6D3 Cluster: DEAD/DEAH box helicase-like; n=2; Frank... 169 1e-40
UniRef50_A7CUH7 Cluster: DEAD/DEAH box helicase domain protein; ... 169 1e-40
UniRef50_A4LYS0 Cluster: DEAD/DEAH box helicase domain protein; ... 169 1e-40
UniRef50_A0RUV7 Cluster: Superfamily II helicase; n=3; Thermopro... 169 1e-40
UniRef50_Q2BP56 Cluster: Putative ATP-dependent RNA helicase; n=... 169 1e-40
UniRef50_A3JG19 Cluster: ATP-dependent RNA helicase; n=1; Marino... 169 1e-40
UniRef50_A2U4F0 Cluster: Putative ATP-dependent RNA helicase; n=... 169 1e-40
UniRef50_P21693 Cluster: ATP-independent RNA helicase dbpA; n=19... 169 1e-40
UniRef50_Q7MT81 Cluster: ATP-dependent RNA helicase, DEAD/DEAH b... 169 2e-40
UniRef50_Q0M1B5 Cluster: Helicase-like:DEAD/DEAH box helicase-li... 169 2e-40
UniRef50_A1UCR5 Cluster: DEAD/DEAH box helicase domain protein; ... 169 2e-40
UniRef50_Q7QTB2 Cluster: GLP_15_13424_14974; n=2; Giardia intest... 169 2e-40
UniRef50_Q978T9 Cluster: ATP-dependent RNA helicase; n=3; Thermo... 169 2e-40
UniRef50_A6DHU9 Cluster: DEAD/DEAH box helicase-like protein; n=... 168 2e-40
UniRef50_A5FST0 Cluster: DEAD/DEAH box helicase domain protein; ... 168 2e-40
UniRef50_A1KUM8 Cluster: Putative ATP-dependent RNA helicase; n=... 168 2e-40
UniRef50_Q58083 Cluster: Probable ATP-dependent RNA helicase MJ0... 168 2e-40
UniRef50_Q11UI8 Cluster: DEAD box-related helicase; n=3; Sphingo... 168 3e-40
UniRef50_A4SWL3 Cluster: DEAD/DEAH box helicase domain protein; ... 168 3e-40
UniRef50_Q9S531 Cluster: DEAD-box protein; n=4; Cystobacterineae... 167 4e-40
UniRef50_A6PQ62 Cluster: DEAD/DEAH box helicase domain protein; ... 167 4e-40
UniRef50_UPI0001509D93 Cluster: DEAD/DEAH box helicase family pr... 167 5e-40
UniRef50_A3QMD4 Cluster: Putative uncharacterized protein mel-46... 167 5e-40
UniRef50_P54475 Cluster: Probable ATP-dependent RNA helicase yqf... 167 5e-40
UniRef50_Q2BMZ1 Cluster: ATP-dependent RNA helicase; n=1; Neptun... 167 7e-40
UniRef50_A6VX62 Cluster: DEAD/DEAH box helicase domain protein; ... 167 7e-40
UniRef50_Q8D7D0 Cluster: Superfamily II DNA and RNA helicase; n=... 166 9e-40
UniRef50_Q28T45 Cluster: DEAD/DEAH box helicase-like protein; n=... 166 9e-40
UniRef50_A2E773 Cluster: Helicase conserved C-terminal domain co... 166 1e-39
UniRef50_UPI00015B4D43 Cluster: PREDICTED: hypothetical protein;... 165 2e-39
UniRef50_Q82T78 Cluster: RhlE; ATP-dependent RNA helicase RhlE; ... 165 2e-39
UniRef50_Q0RTL3 Cluster: Cold-shock DeaD box ATP-dependent RNA h... 165 2e-39
UniRef50_Q0BSI7 Cluster: ATP-dependent RNA helicase; n=12; Alpha... 165 2e-39
UniRef50_A0KXT6 Cluster: DEAD/DEAH box helicase domain protein; ... 165 2e-39
UniRef50_P0C2N8 Cluster: ATP-dependent RNA helicase drs-1; n=16;... 165 2e-39
UniRef50_Q92GV2 Cluster: ATP-dependent RNA helicase RhlE; n=10; ... 165 2e-39
UniRef50_Q5FUQ9 Cluster: ATP-dependent RNA helicase; n=11; cellu... 165 2e-39
UniRef50_Q15T34 Cluster: DEAD/DEAH box helicase-like; n=1; Pseud... 165 2e-39
UniRef50_Q54TJ4 Cluster: Putative uncharacterized protein; n=1; ... 165 3e-39
UniRef50_Q87HW1 Cluster: ATP-dependent RNA helicase, DEAD box fa... 164 4e-39
UniRef50_Q81LV0 Cluster: ATP-dependent RNA helicase, DEAD/DEAH b... 164 4e-39
UniRef50_Q1Q4V2 Cluster: Similar to ATP-independent RNA helicase... 164 4e-39
UniRef50_Q7QQX6 Cluster: GLP_383_7421_6129; n=1; Giardia lamblia... 164 4e-39
UniRef50_UPI0000498D2C Cluster: DEAD/DEAH box helicase; n=3; Ent... 164 5e-39
UniRef50_Q0HYG8 Cluster: DEAD/DEAH box helicase domain protein; ... 164 5e-39
UniRef50_A6VTY7 Cluster: DEAD/DEAH box helicase domain protein; ... 164 5e-39
UniRef50_Q6CZD9 Cluster: ATP-dependent RNA helicase rhlB; n=2; G... 164 5e-39
UniRef50_A6QYH1 Cluster: 2-isopropylmalate synthase; n=4; Ascomy... 163 7e-39
UniRef50_Q5FNK0 Cluster: ATP-dependent RNA helicase; n=1; Glucon... 163 9e-39
UniRef50_Q3AZR1 Cluster: DEAD/DEAH box helicase-like; n=2; Synec... 163 9e-39
UniRef50_A2ED04 Cluster: DEAD/DEAH box helicase family protein; ... 163 9e-39
UniRef50_Q96GQ7 Cluster: Probable ATP-dependent RNA helicase DDX... 163 9e-39
UniRef50_UPI00015B5D7B Cluster: PREDICTED: similar to LD28101p; ... 163 1e-38
UniRef50_A1USG3 Cluster: DEAD/DEAH box helicase domain/helicase ... 163 1e-38
UniRef50_A2EVI2 Cluster: DEAD/DEAH box helicase family protein; ... 163 1e-38
UniRef50_UPI00003C8469 Cluster: hypothetical protein Faci_030017... 162 2e-38
UniRef50_A6TX49 Cluster: DEAD/DEAH box helicase domain protein; ... 162 2e-38
UniRef50_UPI0000585111 Cluster: PREDICTED: hypothetical protein;... 162 2e-38
UniRef50_Q12QV2 Cluster: DEAD/DEAH box helicase-like protein; n=... 162 2e-38
UniRef50_Q0HKH0 Cluster: DEAD/DEAH box helicase domain protein; ... 162 2e-38
UniRef50_Q1I3W1 Cluster: ATP-dependent RNA helicase RhlE, DEAD b... 161 3e-38
UniRef50_Q4FSS4 Cluster: Possible ATP-dependent DEAD/DEAH box RN... 161 4e-38
UniRef50_A3I1F5 Cluster: DEAD/DEAH box helicase-like protein; n=... 161 4e-38
UniRef50_A0KTC9 Cluster: DEAD/DEAH box helicase domain protein; ... 161 4e-38
UniRef50_Q5T1V6 Cluster: Probable ATP-dependent RNA helicase DDX... 161 4e-38
UniRef50_UPI0000D55AB0 Cluster: PREDICTED: similar to Probable A... 161 5e-38
UniRef50_Q8YH70 Cluster: ATP-DEPENDENT RNA HELICASE RHLE; n=10; ... 161 5e-38
UniRef50_Q5NML9 Cluster: DNA and RNA helicase; n=28; Alphaproteo... 161 5e-38
UniRef50_Q39MK8 Cluster: DEAD/DEAH box helicase; n=10; Proteobac... 160 6e-38
UniRef50_UPI0000DB7226 Cluster: PREDICTED: similar to Probable A... 160 8e-38
UniRef50_UPI00004987FF Cluster: DEAD/DEAH box helicase; n=5; Ent... 160 8e-38
UniRef50_A6DL95 Cluster: Probable ATP-dependent RNA helicase; n=... 160 8e-38
UniRef50_P38712 Cluster: ATP-dependent rRNA helicase RRP3; n=6; ... 160 8e-38
UniRef50_Q8D3Y6 Cluster: ATP-dependent RNA helicase, DEAD box fa... 159 1e-37
UniRef50_Q8GY84 Cluster: DEAD-box ATP-dependent RNA helicase 10;... 159 1e-37
UniRef50_Q5CHB7 Cluster: Putative uncharacterized protein; n=2; ... 159 1e-37
UniRef50_A2DES1 Cluster: DEAD/DEAH box helicase family protein; ... 159 1e-37
UniRef50_Q5KIK3 Cluster: ATP-dependent RNA helicase DRS1; n=1; F... 159 1e-37
UniRef50_Q4SP80 Cluster: Chromosome 15 SCAF14542, whole genome s... 159 2e-37
UniRef50_Q9KNA4 Cluster: ATP-dependent RNA helicase, DEAD box fa... 159 2e-37
UniRef50_A6GSW1 Cluster: Putative ATP-dependent RNA helicase; n=... 158 3e-37
UniRef50_Q9SQV1 Cluster: Probable DEAD-box ATP-dependent RNA hel... 158 3e-37
UniRef50_UPI00015BD198 Cluster: UPI00015BD198 related cluster; n... 158 3e-37
UniRef50_Q835K0 Cluster: ATP-dependent RNA helicase, DEAD/DEAH b... 158 3e-37
UniRef50_Q5FLW7 Cluster: RNA helicase; n=9; Lactobacillus|Rep: R... 158 3e-37
UniRef50_Q480Z7 Cluster: ATP-dependent RNA helicase, DEAD box fa... 158 3e-37
UniRef50_A1FEC3 Cluster: DEAD/DEAH box helicase-like; n=21; Gamm... 158 3e-37
UniRef50_UPI0000498CE0 Cluster: DEAD/DEAH box helicase; n=1; Ent... 157 4e-37
UniRef50_A2AAP7 Cluster: DEAD (Asp-Glu-Ala-Asp) box polypeptide ... 157 4e-37
UniRef50_Q6F0U0 Cluster: ATP-dependent RNA helicase; n=1; Mesopl... 157 4e-37
UniRef50_Q30P62 Cluster: DEAD/DEAH box helicase-like; n=1; Thiom... 157 4e-37
UniRef50_Q2S6I0 Cluster: ATP-dependent RNA helicase; n=1; Salini... 157 4e-37
UniRef50_Q17BP5 Cluster: DEAD box ATP-dependent RNA helicase; n=... 157 4e-37
UniRef50_A6NSW7 Cluster: Putative uncharacterized protein; n=1; ... 157 6e-37
UniRef50_P21507 Cluster: ATP-dependent RNA helicase srmB; n=82; ... 157 6e-37
UniRef50_Q01PH0 Cluster: DEAD/DEAH box helicase domain protein; ... 157 8e-37
UniRef50_A3WD13 Cluster: DNA and RNA helicase; n=2; Alphaproteob... 157 8e-37
UniRef50_Q5BF42 Cluster: Putative uncharacterized protein; n=1; ... 157 8e-37
UniRef50_Q9PA24 Cluster: ATP-dependent RNA helicase rhlB; n=87; ... 157 8e-37
UniRef50_Q09903 Cluster: ATP-dependent RNA helicase drs1; n=1; S... 157 8e-37
UniRef50_Q4V836 Cluster: MGC114699 protein; n=9; Deuterostomia|R... 156 1e-36
UniRef50_Q2YZZ9 Cluster: Putative uncharacterized protein; n=1; ... 156 1e-36
UniRef50_Q1MYS3 Cluster: Probable ATP-dependent RNA helicase; n=... 156 1e-36
UniRef50_Q16T16 Cluster: DEAD box ATP-dependent RNA helicase; n=... 156 1e-36
UniRef50_Q6KZC2 Cluster: ATP-dependent RNA helicase; n=1; Picrop... 156 1e-36
UniRef50_A7HG33 Cluster: DEAD/DEAH box helicase domain protein; ... 156 1e-36
UniRef50_Q5BXU1 Cluster: SJCHGC08663 protein; n=1; Schistosoma j... 156 1e-36
UniRef50_Q1IMK6 Cluster: DEAD/DEAH box helicase-like; n=1; Acido... 155 2e-36
UniRef50_Q9H0S4 Cluster: Probable ATP-dependent RNA helicase DDX... 155 2e-36
UniRef50_Q44NG9 Cluster: Helicase, C-terminal:DEAD/DEAH box heli... 155 2e-36
UniRef50_Q1J0S9 Cluster: DEAD/DEAH box helicase-like protein; n=... 155 2e-36
UniRef50_Q11WD3 Cluster: Possible ATP-dependent RNA helicase; n=... 155 2e-36
UniRef50_O97032 Cluster: DjVLGB; n=2; Dugesia|Rep: DjVLGB - Duge... 155 2e-36
UniRef50_Q62J95 Cluster: ATP-dependent RNA helicase RhlE, putati... 155 3e-36
UniRef50_A4EAF2 Cluster: Putative uncharacterized protein; n=1; ... 154 4e-36
UniRef50_Q6KI10 Cluster: DEAD-box ATP-dependent RNA helicase; n=... 154 5e-36
UniRef50_Q0TQ86 Cluster: ATP-dependent RNA helicase, DEAD/DEAH b... 154 5e-36
UniRef50_Q22T03 Cluster: DEAD/DEAH box helicase family protein; ... 154 5e-36
UniRef50_Q5GRS8 Cluster: Superfamily II DNA/RNA helicase; n=4; W... 153 7e-36
UniRef50_A3ZWP8 Cluster: ATP-dependent RNA helicase; n=1; Blasto... 153 7e-36
UniRef50_UPI0000566899 Cluster: UPI0000566899 related cluster; n... 153 9e-36
UniRef50_Q7JQN4 Cluster: LD15481p; n=7; Endopterygota|Rep: LD154... 153 9e-36
UniRef50_Q6A841 Cluster: Putative ATP-dependent RNA helicase; n=... 153 1e-35
UniRef50_Q087U7 Cluster: DEAD/DEAH box helicase domain protein; ... 153 1e-35
UniRef50_UPI0000499A01 Cluster: DEAD/DEAH box helicase; n=1; Ent... 152 2e-35
UniRef50_Q30YG9 Cluster: DEAD/DEAH box helicase-like; n=3; Delta... 152 2e-35
UniRef50_Q2BIX8 Cluster: Probable ATP-dependent RNA helicase; n=... 152 2e-35
UniRef50_Q688Z4 Cluster: Putative uncharacterized protein; n=3; ... 152 2e-35
UniRef50_Q8D563 Cluster: Superfamily II DNA and RNA helicase; n=... 152 2e-35
UniRef50_A2DH37 Cluster: DEAD/DEAH box helicase family protein; ... 152 2e-35
UniRef50_Q81RE0 Cluster: ATP-dependent RNA helicase, DEAD/DEAH b... 151 3e-35
UniRef50_A2DP01 Cluster: DEAD/DEAH box helicase family protein; ... 151 3e-35
UniRef50_A0EIJ0 Cluster: Chromosome undetermined scaffold_99, wh... 151 3e-35
UniRef50_Q9LYJ9 Cluster: DEAD-box ATP-dependent RNA helicase 46;... 151 3e-35
UniRef50_A2DSJ0 Cluster: DEAD/DEAH box helicase family protein; ... 151 4e-35
UniRef50_Q89UH0 Cluster: Dead-box ATP-dependent RNA helicase; n=... 151 5e-35
UniRef50_Q188H5 Cluster: Putative ATP-dependent RNA helicase; n=... 151 5e-35
UniRef50_A5UZK3 Cluster: DEAD/DEAH box helicase domain protein; ... 151 5e-35
UniRef50_A1VA48 Cluster: DEAD/DEAH box helicase domain protein; ... 151 5e-35
UniRef50_Q4Q1N9 Cluster: DEAD box RNA helicase, putative; n=5; T... 151 5e-35
UniRef50_UPI0000DB7667 Cluster: PREDICTED: similar to CG32344-PA... 150 7e-35
UniRef50_Q0LVA0 Cluster: Helicase-like:DEAD/DEAH box helicase-li... 150 7e-35
UniRef50_Q0FAJ4 Cluster: Dead-box ATP-dependent RNA helicase; n=... 150 7e-35
UniRef50_A0C321 Cluster: Chromosome undetermined scaffold_146, w... 150 7e-35
UniRef50_Q97WT0 Cluster: ATP-dependent RNA helicase; n=4; Sulfol... 150 7e-35
UniRef50_P09052 Cluster: ATP-dependent RNA helicase vasa; n=5; E... 150 7e-35
UniRef50_O49289 Cluster: Putative DEAD-box ATP-dependent RNA hel... 150 7e-35
UniRef50_Q08Q14 Cluster: HeliCase, c-terminal:dead/deah box heli... 150 9e-35
UniRef50_A1G315 Cluster: DEAD/DEAH box helicase-like; n=2; Salin... 150 9e-35
UniRef50_A2EAD4 Cluster: DEAD/DEAH box helicase family protein; ... 150 9e-35
UniRef50_Q4PNH7 Cluster: Putative cold-shock dead-box protein A;... 149 1e-34
UniRef50_Q21EB3 Cluster: DEAD/DEAH box helicase-like protein; n=... 149 1e-34
UniRef50_A4C0F9 Cluster: ATP-dependent RNA helicase; n=6; Bacter... 149 1e-34
UniRef50_Q6MN90 Cluster: RNA helicase; n=1; Bdellovibrio bacteri... 149 2e-34
UniRef50_A4C6L9 Cluster: ATP-dependent RNA helicase, DEAD box fa... 149 2e-34
UniRef50_Q7QV50 Cluster: GLP_435_34658_36088; n=1; Giardia lambl... 149 2e-34
UniRef50_Q5JKF2 Cluster: DEAD-box ATP-dependent RNA helicase 40;... 149 2e-34
UniRef50_A2SJY2 Cluster: Putative ATP-dependent RNA helicase; n=... 149 2e-34
UniRef50_A0D315 Cluster: Chromosome undetermined scaffold_36, wh... 148 3e-34
UniRef50_Q5VQL1-2 Cluster: Isoform 2 of Q5VQL1 ; n=2; Magnolioph... 148 4e-34
UniRef50_Q0G0P8 Cluster: Superfamily II DNA and RNA helicase; n=... 148 4e-34
UniRef50_A4S6M9 Cluster: Predicted protein; n=3; Ostreococcus|Re... 148 4e-34
UniRef50_Q4W7T8 Cluster: VASA RNA helicase; n=1; Artemia francis... 148 4e-34
UniRef50_Q4QC38 Cluster: RNA helicase, putative; n=7; Trypanosom... 148 4e-34
UniRef50_Q9P9G7 Cluster: DEAD-box RNA helicase; n=3; Methanosarc... 148 4e-34
UniRef50_Q07886 Cluster: Probable ATP-dependent RNA helicase Dbp... 148 4e-34
UniRef50_Q9VHP0 Cluster: ATP-dependent RNA helicase bel; n=4; Pr... 148 4e-34
UniRef50_Q8EPZ1 Cluster: ATP-dependent RNA helicase; n=2; Bacill... 147 5e-34
UniRef50_Q6A6U7 Cluster: ATP-dependent RNA helicase; n=3; Actino... 147 5e-34
UniRef50_A3PFY9 Cluster: DEAD/DEAH box helicase domain protein; ... 147 5e-34
UniRef50_Q4W7T7 Cluster: VASA RNA helicase; n=3; Daphniidae|Rep:... 147 5e-34
UniRef50_A3H9E9 Cluster: DEAD/DEAH box helicase-like; n=1; Caldi... 147 5e-34
UniRef50_Q6MQY6 Cluster: ATP-dependent RNA helicase; n=1; Bdello... 147 6e-34
UniRef50_Q7QA96 Cluster: ENSANGP00000013118; n=5; Eumetazoa|Rep:... 147 6e-34
UniRef50_Q9GV12 Cluster: Vasa-related protein CnVAS2; n=14; Eume... 146 8e-34
UniRef50_Q55BR9 Cluster: Putative uncharacterized protein; n=1; ... 146 8e-34
UniRef50_UPI00015B6038 Cluster: PREDICTED: similar to DEAD box A... 146 1e-33
UniRef50_Q7K4L8 Cluster: LD33749p; n=1; Drosophila melanogaster|... 146 1e-33
UniRef50_Q6APU7 Cluster: Related to ATP-dependent RNA helicase; ... 146 1e-33
UniRef50_Q8SR63 Cluster: ATP-dependent rRNA helicase RRP3; n=1; ... 146 1e-33
UniRef50_Q18W60 Cluster: DEAD/DEAH box helicase-like; n=2; Desul... 145 2e-33
UniRef50_Q11QF9 Cluster: Inducible ATP-independent RNA helicase;... 145 2e-33
UniRef50_A2EQ41 Cluster: DEAD/DEAH box helicase family protein; ... 145 3e-33
UniRef50_O00571 Cluster: ATP-dependent RNA helicase DDX3X; n=74;... 145 3e-33
UniRef50_O34750 Cluster: YfmL protein; n=5; Bacillus|Rep: YfmL p... 144 3e-33
UniRef50_Q54CB8 Cluster: Putative uncharacterized protein; n=1; ... 144 3e-33
UniRef50_A0D361 Cluster: Chromosome undetermined scaffold_36, wh... 144 3e-33
UniRef50_Q4P3U9 Cluster: ATP-dependent rRNA helicase RRP3; n=20;... 144 3e-33
UniRef50_Q8SRB2 Cluster: ATP-dependent RNA helicase DBP2; n=103;... 144 3e-33
UniRef50_Q9V3C0 Cluster: ATP-dependent RNA helicase abstrakt; n=... 144 3e-33
UniRef50_Q89IS2 Cluster: Cold-shock dead-box protein A; n=28; Al... 144 4e-33
UniRef50_A6G4U7 Cluster: DEAD/DEAH box helicase; n=2; Plesiocyst... 144 4e-33
UniRef50_Q9LKL6 Cluster: DEAD box protein P68; n=5; Viridiplanta... 144 4e-33
UniRef50_Q4JF01 Cluster: Vasa homlogue; n=2; Eukaryota|Rep: Vasa... 144 4e-33
UniRef50_Q8L7S8 Cluster: DEAD-box ATP-dependent RNA helicase 3; ... 144 4e-33
UniRef50_UPI0000499ECF Cluster: DEAD/DEAH box helicase; n=1; Ent... 144 6e-33
UniRef50_Q4JG17 Cluster: Vasa-like protein; n=1; Litopenaeus van... 144 6e-33
UniRef50_A3BT52 Cluster: DEAD-box ATP-dependent RNA helicase 29;... 144 6e-33
UniRef50_Q6MR64 Cluster: ATP-dependent RNA helicase; n=5; cellul... 143 8e-33
UniRef50_UPI00015609AE Cluster: PREDICTED: similar to DEAD (Asp-... 143 1e-32
UniRef50_Q0AR94 Cluster: DEAD/DEAH box helicase domain protein; ... 143 1e-32
UniRef50_A4BBH5 Cluster: Probable ATP-dependent RNA helicase; n=... 143 1e-32
UniRef50_A0JYP4 Cluster: DEAD/DEAH box helicase domain protein; ... 143 1e-32
UniRef50_Q4Q2Z6 Cluster: ATP-dependent RNA helicase, putative; n... 143 1e-32
UniRef50_Q2PZC2 Cluster: Vasa protein; n=3; Apidae|Rep: Vasa pro... 143 1e-32
UniRef50_A4IBK1 Cluster: ATP-dependent RNA helicase, putative; n... 143 1e-32
UniRef50_A2E9Y0 Cluster: DEAD/DEAH box helicase family protein; ... 143 1e-32
UniRef50_A0BDT5 Cluster: Chromosome undetermined scaffold_101, w... 143 1e-32
UniRef50_Q9K7L3 Cluster: RNA helicase; n=2; Bacillus|Rep: RNA he... 142 1e-32
UniRef50_Q17JB5 Cluster: DEAD box ATP-dependent RNA helicase; n=... 142 1e-32
UniRef50_A0C369 Cluster: Chromosome undetermined scaffold_146, w... 142 1e-32
UniRef50_UPI00015B61D8 Cluster: PREDICTED: similar to vasa-like ... 142 2e-32
UniRef50_Q8TDD1 Cluster: ATP-dependent RNA helicase DDX54; n=45;... 142 2e-32
UniRef50_A5FH33 Cluster: DEAD/DEAH box helicase domain protein; ... 142 2e-32
UniRef50_A5E6W6 Cluster: ATP-dependent rRNA helicase RRP3; n=4; ... 142 2e-32
UniRef50_Q5N7W4 Cluster: DEAD-box ATP-dependent RNA helicase 30;... 142 2e-32
UniRef50_Q6MHS8 Cluster: ATP-dependent RNA helicase; n=1; Bdello... 141 3e-32
UniRef50_A6Q863 Cluster: ATP-dependent RNA helicase; n=1; Sulfur... 141 3e-32
UniRef50_A6FEC9 Cluster: ATP-dependent RNA helicase, DEAD box fa... 141 3e-32
UniRef50_Q9M2F9 Cluster: DEAD-box ATP-dependent RNA helicase 52;... 141 3e-32
UniRef50_P24784 Cluster: ATP-dependent RNA helicase DBP1; n=103;... 141 3e-32
UniRef50_Q2Z064 Cluster: Probable ATP-dependent RNA helicase; n=... 141 4e-32
UniRef50_A6DML6 Cluster: ATP-dependent RNA helicase; n=1; Lentis... 141 4e-32
UniRef50_Q61AN8 Cluster: Putative uncharacterized protein CBG136... 141 4e-32
UniRef50_A0C015 Cluster: Chromosome undetermined scaffold_14, wh... 141 4e-32
UniRef50_O22907 Cluster: DEAD-box ATP-dependent RNA helicase 24;... 141 4e-32
UniRef50_UPI00004992E6 Cluster: DEAD/DEAH box helicase; n=3; Ent... 140 5e-32
UniRef50_Q8D6Y8 Cluster: Superfamily II DNA and RNA helicase; n=... 140 5e-32
UniRef50_Q84TG1 Cluster: DEAD-box ATP-dependent RNA helicase 57;... 140 5e-32
UniRef50_Q4IF76 Cluster: ATP-dependent RNA helicase DBP2; n=4; F... 140 5e-32
UniRef50_Q893G8 Cluster: ATP-dependent RNA helicase; n=4; Clostr... 140 7e-32
UniRef50_Q0S0C7 Cluster: ATP-dependent RNA helicase; n=5; Actino... 140 7e-32
UniRef50_Q9GV07 Cluster: Vasa-related protein PlVAS1; n=1; Duges... 140 7e-32
UniRef50_A4J5M3 Cluster: DEAD/DEAH box helicase domain protein; ... 140 9e-32
UniRef50_Q9GNP1 Cluster: Vasa homolog; n=18; Eumetazoa|Rep: Vasa... 140 9e-32
UniRef50_P19109 Cluster: ATP-dependent RNA helicase p62; n=9; Eu... 140 9e-32
UniRef50_Q9GV13 Cluster: Vasa-related protein CnVAS1; n=3; Eumet... 139 1e-31
UniRef50_Q8MZI3 Cluster: GH10652p; n=2; Drosophila melanogaster|... 139 1e-31
UniRef50_Q4N215 Cluster: RNA helicase, putative; n=3; Aconoidasi... 139 1e-31
UniRef50_A0M3C7 Cluster: RhlE-like DEAD box family ATP-dependent... 139 2e-31
UniRef50_Q3ZDP1 Cluster: Vasa-like protein; n=7; Neoptera|Rep: V... 139 2e-31
UniRef50_A2DB16 Cluster: DEAD/DEAH box helicase family protein; ... 139 2e-31
UniRef50_A0E4U1 Cluster: Chromosome undetermined scaffold_79, wh... 139 2e-31
UniRef50_Q8SSG7 Cluster: PUTATIVE ATP-DEPENDENT RNA HELICASE; n=... 139 2e-31
UniRef50_UPI0000DAE40A Cluster: hypothetical protein Rgryl_01000... 138 2e-31
UniRef50_Q965K2 Cluster: Putative uncharacterized protein; n=2; ... 138 2e-31
UniRef50_Q6CDS6 Cluster: ATP-dependent RNA helicase ROK1; n=1; Y... 138 2e-31
UniRef50_Q9NXZ2 Cluster: Probable ATP-dependent RNA helicase DDX... 138 2e-31
UniRef50_UPI00004988F8 Cluster: DEAD/DEAH box helicase; n=1; Ent... 138 3e-31
UniRef50_A6VWX2 Cluster: DEAD/DEAH box helicase domain protein; ... 138 3e-31
UniRef50_A5EYB1 Cluster: ATP-dependent rna helicase Rhl; n=2; Ga... 138 3e-31
UniRef50_Q6FM43 Cluster: Pre-mRNA-splicing ATP-dependent RNA hel... 138 3e-31
UniRef50_UPI0000498D8E Cluster: ATP-dependent RNA helicase; n=1;... 138 4e-31
UniRef50_Q9KKW0 Cluster: ATP-dependent RNA helicase, DEAD box fa... 138 4e-31
UniRef50_Q1AG34 Cluster: Ded1-like DEAD-box RNA helicase; n=1; C... 138 4e-31
UniRef50_P45818 Cluster: ATP-dependent RNA helicase ROK1; n=11; ... 138 4e-31
UniRef50_Q10202 Cluster: ATP-dependent RNA helicase dbp3; n=1; S... 138 4e-31
UniRef50_A4AFV6 Cluster: ATP-dependent RNA helicase; n=3; Actino... 137 5e-31
UniRef50_Q4N0E9 Cluster: ATP-dependent RNA helicase, putative; n... 137 5e-31
UniRef50_P20447 Cluster: ATP-dependent RNA helicase DBP3; n=20; ... 137 5e-31
UniRef50_Q8SY39 Cluster: LD28101p; n=3; Diptera|Rep: LD28101p - ... 137 7e-31
UniRef50_Q86IZ9 Cluster: Similar to Rattus norvegicus (Rat). ROK... 137 7e-31
UniRef50_Q16XX4 Cluster: DEAD box ATP-dependent RNA helicase; n=... 137 7e-31
UniRef50_Q1GJ43 Cluster: DEAD/DEAH box helicase-like protein; n=... 136 9e-31
UniRef50_Q4N4B1 Cluster: ATP-dependent RNA helicase, putative; n... 136 9e-31
UniRef50_Q3EBD3 Cluster: DEAD-box ATP-dependent RNA helicase 41;... 136 9e-31
UniRef50_Q9ZRZ8 Cluster: DEAD-box ATP-dependent RNA helicase 28;... 136 9e-31
UniRef50_UPI00006CD03A Cluster: P68-like protein, putative; n=1;... 136 1e-30
UniRef50_A0VLH7 Cluster: DEAD/DEAH box helicase domain protein; ... 136 1e-30
UniRef50_Q00T47 Cluster: Putative RNA helicase, DRH1; n=1; Ostre... 136 1e-30
UniRef50_O97031 Cluster: DjVLGA; n=1; Dugesia japonica|Rep: DjVL... 136 1e-30
UniRef50_A0EA02 Cluster: Chromosome undetermined scaffold_85, wh... 136 1e-30
UniRef50_Q012E3 Cluster: DEAD-box protein abstrakt; n=1; Ostreoc... 136 2e-30
UniRef50_Q9FNM7 Cluster: DEAD-box ATP-dependent RNA helicase 26;... 136 2e-30
UniRef50_Q26696 Cluster: Putative DEAD-box RNA helicase HEL64; n... 136 2e-30
UniRef50_Q9Y2R4 Cluster: Probable ATP-dependent RNA helicase DDX... 136 2e-30
UniRef50_Q41FS1 Cluster: IMP dehydrogenase/GMP reductase:Helicas... 135 2e-30
UniRef50_Q1U8H0 Cluster: Helicase-like:DEAD/DEAH box helicase-li... 135 2e-30
UniRef50_Q0C4R1 Cluster: ATP-dependent RNA helicase, DEAD/DEAH b... 135 2e-30
UniRef50_Q8L4E9 Cluster: DEAD-box ATP-dependent RNA helicase 36;... 135 2e-30
UniRef50_Q97PV7 Cluster: ATP-dependent RNA helicase, DEAD/DEAH b... 135 3e-30
UniRef50_A4RUB4 Cluster: Predicted protein; n=2; Ostreococcus|Re... 135 3e-30
UniRef50_Q24I45 Cluster: DEAD/DEAH box helicase family protein; ... 134 4e-30
UniRef50_Q9LUW5 Cluster: DEAD-box ATP-dependent RNA helicase 53;... 134 4e-30
UniRef50_Q9P7C7 Cluster: Pre-mRNA-processing ATP-dependent RNA h... 134 4e-30
UniRef50_Q5CP59 Cluster: DEAD box polypeptide, Y chromosome-rela... 134 5e-30
UniRef50_Q5CNJ7 Cluster: Similar to RNA-dependent helicase p68; ... 134 5e-30
UniRef50_A7RGX3 Cluster: Predicted protein; n=3; Eukaryota|Rep: ... 134 5e-30
UniRef50_Q16W98 Cluster: DEAD box ATP-dependent RNA helicase; n=... 134 6e-30
UniRef50_A5DIX5 Cluster: ATP-dependent RNA helicase ROK1; n=2; P... 134 6e-30
UniRef50_A3WBM2 Cluster: Cold-shock dead-box protein A; n=1; Ery... 133 8e-30
UniRef50_A7TRT2 Cluster: Putative uncharacterized protein; n=1; ... 133 8e-30
UniRef50_Q9Y6V7 Cluster: Probable ATP-dependent RNA helicase DDX... 133 8e-30
UniRef50_Q4PDT1 Cluster: ATP-dependent RNA helicase DBP3; n=1; U... 133 8e-30
UniRef50_A0UX17 Cluster: DEAD/DEAH box helicase-like; n=5; Clost... 133 1e-29
UniRef50_Q1JSQ3 Cluster: Dead-box helicase, putative; n=1; Toxop... 133 1e-29
UniRef50_UPI0000D55FA1 Cluster: PREDICTED: similar to CG3561-PA;... 132 1e-29
UniRef50_P23394 Cluster: Pre-mRNA-splicing ATP-dependent RNA hel... 132 1e-29
UniRef50_UPI0000D5571E Cluster: PREDICTED: similar to CG5800-PA;... 132 2e-29
UniRef50_O54116 Cluster: Probable DEAD-box RNA helicase; n=10; S... 132 2e-29
UniRef50_Q0BUS0 Cluster: ATP-dependent RNA helicase; n=3; Rhodos... 132 2e-29
UniRef50_Q8IJ90 Cluster: Putative uncharacterized protein; n=1; ... 132 2e-29
UniRef50_Q4UE18 Cluster: RNA helicase, putative; n=2; Theileria|... 132 2e-29
UniRef50_UPI00006CDDA3 Cluster: CLN3 protein; n=1; Tetrahymena t... 132 3e-29
UniRef50_Q388E8 Cluster: ATP-dependent DEAD/H RNA helicase, puta... 131 3e-29
UniRef50_Q9SB89 Cluster: DEAD-box ATP-dependent RNA helicase 27;... 131 3e-29
UniRef50_A2G6R5 Cluster: DEAD/DEAH box helicase family protein; ... 131 4e-29
UniRef50_Q9NR30 Cluster: Nucleolar RNA helicase 2; n=51; Euteleo... 131 4e-29
UniRef50_O66866 Cluster: ATP-dependent RNA helicase DeaD; n=1; A... 130 6e-29
UniRef50_Q0E3X4 Cluster: DEAD-box ATP-dependent RNA helicase 35A... 130 6e-29
UniRef50_Q2H2J1 Cluster: ATP-dependent RNA helicase DBP4; n=14; ... 130 6e-29
UniRef50_Q6NHC6 Cluster: Putative RNA helicase; n=2; Corynebacte... 130 8e-29
UniRef50_Q2WF63 Cluster: Putative uncharacterized protein; n=4; ... 130 8e-29
UniRef50_Q9LU46 Cluster: DEAD-box ATP-dependent RNA helicase 35;... 130 8e-29
UniRef50_A0CM98 Cluster: Chromosome undetermined scaffold_21, wh... 130 1e-28
UniRef50_Q1WSN6 Cluster: ATP-dependent RNA helicase; n=1; Lactob... 129 1e-28
UniRef50_A4RXX8 Cluster: Predicted protein; n=1; Ostreococcus lu... 129 1e-28
UniRef50_Q22MC1 Cluster: Type III restriction enzyme, res subuni... 129 1e-28
UniRef50_Q966L9 Cluster: ATP-dependent RNA helicase glh-2; n=4; ... 129 2e-28
UniRef50_Q03532 Cluster: ATP-dependent RNA helicase HAS1; n=70; ... 128 2e-28
UniRef50_Q5QVE4 Cluster: ATP-dependent RNA helicase; n=2; Idioma... 128 3e-28
UniRef50_A1WB42 Cluster: DEAD/DEAH box helicase domain protein; ... 128 3e-28
UniRef50_Q9N478 Cluster: Putative uncharacterized protein; n=2; ... 128 3e-28
UniRef50_A0CUL6 Cluster: Chromosome undetermined scaffold_28, wh... 128 3e-28
UniRef50_Q41F45 Cluster: Helicase, C-terminal:DEAD/DEAH box heli... 128 4e-28
UniRef50_Q9VXW2 Cluster: CG6227-PA; n=11; Coelomata|Rep: CG6227-... 128 4e-28
UniRef50_A7S2R2 Cluster: Predicted protein; n=5; Eumetazoa|Rep: ... 128 4e-28
UniRef50_Q4PFD9 Cluster: Pre-mRNA-processing ATP-dependent RNA h... 128 4e-28
UniRef50_Q836U7 Cluster: ATP-dependent RNA helicase, DEAD/DEAH b... 127 5e-28
UniRef50_A0BDD2 Cluster: Chromosome undetermined scaffold_100, w... 127 5e-28
UniRef50_Q6BG49 Cluster: RNA helicase, putative; n=1; Paramecium... 127 7e-28
UniRef50_A2D7F9 Cluster: DEAD/DEAH box helicase family protein; ... 127 7e-28
UniRef50_Q4IP34 Cluster: Pre-mRNA-processing ATP-dependent RNA h... 127 7e-28
UniRef50_A5DU73 Cluster: Pre-mRNA-splicing ATP-dependent RNA hel... 127 7e-28
UniRef50_UPI0000E48294 Cluster: PREDICTED: similar to DEAD (Asp-... 126 9e-28
UniRef50_A7CSF3 Cluster: DEAD/DEAH box helicase domain protein; ... 126 9e-28
UniRef50_Q238V7 Cluster: Type III restriction enzyme, res subuni... 126 9e-28
UniRef50_Q9NQI0 Cluster: Probable ATP-dependent RNA helicase DDX... 126 9e-28
UniRef50_Q8SR01 Cluster: ATP-dependent RNA helicase DBP4; n=1; E... 126 9e-28
UniRef50_Q9AW05 Cluster: DEAD box protein; n=1; Guillardia theta... 126 1e-27
UniRef50_Q0UZ59 Cluster: ATP-dependent RNA helicase DBP9; n=1; P... 126 1e-27
UniRef50_A7QKJ8 Cluster: Chromosome chr2 scaffold_112, whole gen... 126 2e-27
UniRef50_A4S3A0 Cluster: Predicted protein; n=2; Ostreococcus|Re... 126 2e-27
UniRef50_Q9VVK8 Cluster: CG5589-PA; n=12; Eumetazoa|Rep: CG5589-... 126 2e-27
UniRef50_Q754U8 Cluster: Pre-mRNA-processing ATP-dependent RNA h... 126 2e-27
UniRef50_Q16KK0 Cluster: DEAD box ATP-dependent RNA helicase; n=... 125 2e-27
UniRef50_A3FQ46 Cluster: U5 snRNP 100 kD protein, putative; n=2;... 125 2e-27
UniRef50_Q9SW44 Cluster: DEAD-box ATP-dependent RNA helicase 16;... 125 2e-27
UniRef50_A6W6A7 Cluster: DEAD/DEAH box helicase domain protein; ... 125 3e-27
UniRef50_A3TJG3 Cluster: ATP-dependent RNA helicase; n=5; Actino... 125 3e-27
UniRef50_A7ETZ1 Cluster: Putative uncharacterized protein; n=1; ... 125 3e-27
UniRef50_Q8H0U8 Cluster: DEAD-box ATP-dependent RNA helicase 42;... 125 3e-27
UniRef50_Q9N5K1 Cluster: Putative uncharacterized protein; n=2; ... 124 4e-27
>UniRef50_Q9UHL0 Cluster: ATP-dependent RNA helicase DDX25; n=111;
Eumetazoa|Rep: ATP-dependent RNA helicase DDX25 - Homo
sapiens (Human)
Length = 483
Score = 549 bits (1356), Expect = e-155
Identities = 261/432 (60%), Positives = 331/432 (76%), Gaps = 1/432 (0%)
Query: 32 DSDDVPDTPNAADTSLLMKIIRQGLVESKLDIEIQRKDPNSPLYSVKTFEALHLKPNLLK 91
+ DD D + A SLL K+I Q LVES +E+ +KDP+SPLYSVKTFE L LK LLK
Sbjct: 51 NEDDEEDVVDLAANSLLNKLIHQSLVESSHRVEVLQKDPSSPLYSVKTFEELRLKEELLK 110
Query: 92 GVYAMGFNAPSKIQETALPTLLADPPQNMIAQSQSGTGKTAAFVLAMLSRVDSNKNYPQV 151
G+YAMGFN PSKIQE ALP +LA PPQN+IAQSQSGTGKTAAFVLAMLSRV++ + +PQ
Sbjct: 111 GIYAMGFNRPSKIQEMALPMMLAHPPQNLIAQSQSGTGKTAAFVLAMLSRVNALELFPQC 170
Query: 152 LCLSPTYELAIQTGEVAAKMAKFCPEIKLKYAVRGEELPRGSKITDHILIGTPGKMFDWG 211
LCL+PTYELA+QTG V +M KFC ++++ YA+RG +PRG+ IT I+IGTPG + DW
Sbjct: 171 LCLAPTYELALQTGRVVEQMGKFCVDVQVMYAIRGNRIPRGTDITKQIIIGTPGTVLDWC 230
Query: 212 VKFGMFDMGKIKVFVLDEADVMINRQGHQDQCIRIHKCLPSTCQMMFFSATYGTAVMQFA 271
K + D+ KI+VFVLDEADVMI+ QG D IRI + LPS CQM+ FSAT+ +V FA
Sbjct: 231 FKLKLIDLTKIRVFVLDEADVMIDTQGFSDHSIRIQRALPSECQMLLFSATFEDSVWHFA 290
Query: 272 EIIVSNPIIIRLLREEESLDNIKQYYVKCKSAEDKYRAICNIYGVITIGQAIIFCHTRKT 331
E I+ +P +I+L +EE +L+NI+QYYV C+ +DKY+A+CNIYG ITIGQAIIFC TR+
Sbjct: 291 ERIIPDPNVIKLRKEELTLNNIRQYYVLCEHRKDKYQALCNIYGSITIGQAIIFCQTRRN 350
Query: 332 ASWLSEKMSKDGHSVAVLSGELTVEQRIAVLDRFRVGLEKVLITTNVLSRGIDVEQVTLV 391
A WL+ +M +DGH V++LSGELTVEQR +++ RFR G EKVLITTNV +RGIDV+QVT+V
Sbjct: 351 AKWLTVEMIQDGHQVSLLSGELTVEQRASIIQRFRDGKEKVLITTNVCARGIDVKQVTIV 410
Query: 392 VNFDMPMDMNRKADCETYLHRIGRTGRFGKAGIAINLIDSPQAMEICTDIEAHFGKKIQL 451
VNFD+P+ + D ETYLHRIGRTGRFGK G+A N+I+ + + I+ HF I+
Sbjct: 411 VNFDLPVKQGEEPDYETYLHRIGRTGRFGKKGLAFNMIEVDELPSL-MKIQDHFNSSIKQ 469
Query: 452 LDIEDAEEIEKI 463
L+ ED +EIEKI
Sbjct: 470 LNAEDMDEIEKI 481
>UniRef50_Q4S6B9 Cluster: Chromosome 9 SCAF14729, whole genome
shotgun sequence; n=1; Tetraodon nigroviridis|Rep:
Chromosome 9 SCAF14729, whole genome shotgun sequence -
Tetraodon nigroviridis (Green puffer)
Length = 457
Score = 518 bits (1278), Expect = e-145
Identities = 251/455 (55%), Positives = 332/455 (72%), Gaps = 34/455 (7%)
Query: 43 ADTSLLMKIIRQGLVESKLDIEIQRKDPNSPLYSVKTFEALHLKPNLLKGVYAMGFNAPS 102
A+ SLL K+IR LV S +E+ ++DP+SPLYSVK+FE L LKP LLKGVY MGFN PS
Sbjct: 3 AEQSLLNKLIRHSLVHSSNQVEVLQRDPSSPLYSVKSFEELRLKPELLKGVYQMGFNRPS 62
Query: 103 KIQETALPTLLADPPQNMIAQSQSGTGKTAAFVLAMLSRVDSNKNYPQVLCLSPTYELAI 162
+IQE ALP ++A P QN+IAQSQSGTGKTAAF LAML V+ +PQ LC++PTYELA+
Sbjct: 63 RIQENALPLMMAQPAQNLIAQSQSGTGKTAAFCLAMLGIVNPADKWPQCLCIAPTYELAL 122
Query: 163 QTGEVAAKMAKFCPEIKLKYAVRGEELPRGSKITDHILIGTPGKMFDWGVKFGMFDMGKI 222
Q G+V +M +FC +++L YAVRG + RG+K+ + I++GTPG ++DW K + D KI
Sbjct: 123 QIGQVLEQMGRFCADVRLVYAVRGNRIVRGTKVQEQIVVGTPGTVYDWCAKQKVLDPKKI 182
Query: 223 KVFVLDEADVMINRQGHQDQCIRIHK-----------------------CLPSTCQMMFF 259
+FVLDEADVMI+ QGH+DQ IRI + LP CQM+FF
Sbjct: 183 TMFVLDEADVMISMQGHRDQSIRIQRWVLLALLLWGSSVGPPPPPPPLRLLPKGCQMLFF 242
Query: 260 SATYGTAVMQFAEIIVSNPIIIRLLREEESLDNIKQYYVKCKSAEDKYRAICNIYGVITI 319
SAT+ +V +FAE I+ P IRL REEE+LDNI+Q+Y+ C S E+K+ A+CN+YG +TI
Sbjct: 243 SATFEDSVWEFAERIIPEPNYIRLKREEETLDNIRQFYIMCGSKEEKFSALCNLYGCLTI 302
Query: 320 GQAIIFCHTRKTASWLSEKMSKDGHSVAVLSGELTVEQRIAVLDRFRVGLEKVLITTNVL 379
Q I+FC TR+ ASWL+E M+++GH V VLSGE+TVEQR AV++R+R G EKVL+TTNV
Sbjct: 303 AQTIVFCQTRRMASWLAESMTREGHQVGVLSGEMTVEQRAAVIERYREGKEKVLVTTNVC 362
Query: 380 SR-----------GIDVEQVTLVVNFDMPMDMNRKADCETYLHRIGRTGRFGKAGIAINL 428
SR GIDVEQVTLVVNFD+P+D+ +AD +TYLHRIGR+GRFGK G A+NL
Sbjct: 363 SRAAGLRRRLHPSGIDVEQVTLVVNFDLPVDLKGRADNDTYLHRIGRSGRFGKRGFAVNL 422
Query: 429 IDSPQAMEICTDIEAHFGKKIQLLDIEDAEEIEKI 463
+DS ++M+I IEAHF +KI+ LD+E+ +++E++
Sbjct: 423 VDSQRSMDIIRQIEAHFDRKIRKLDLEELDDLEEL 457
>UniRef50_Q22308 Cluster: Putative uncharacterized protein; n=7;
Bilateria|Rep: Putative uncharacterized protein -
Caenorhabditis elegans
Length = 1022
Score = 414 bits (1019), Expect = e-114
Identities = 215/441 (48%), Positives = 285/441 (64%), Gaps = 17/441 (3%)
Query: 40 PNAADTSLLMKIIRQGLVESK-LDIEIQRKDPNSPLYSVKTFEALHLKPNLLKGVYAMGF 98
P AD +LL K I++ + K + +++QR+DP SPLYS+ +F L LKP +LK + M F
Sbjct: 579 PVPADIALLNKFIQKEVKMMKDVVVDVQRQDPKSPLYSISSFRELRLKPEVLKALDTMNF 638
Query: 99 NAPSKIQETALPTLLADPPQNMIAQSQSGTGKTAAFVLAMLSRVDSNKNYPQVLCLSPTY 158
P++IQETALP LL +PP N+IAQ+QSGTGKTAAFVL ML R+D N PQ +CL+PT
Sbjct: 639 QFPTRIQETALPLLLMEPPSNLIAQAQSGTGKTAAFVLTMLCRIDVNLMCPQCICLAPTL 698
Query: 159 ELAIQTGEVAAKMAKFCPEIKLKYAVRGEELP--RGSKITDHILIGTPGKMFDWGVKFGM 216
ELA Q GEV KM KF +K+ YA++G + RG K+T+ I+IGTPG D+ K+
Sbjct: 699 ELAKQIGEVVEKMGKFIDNLKIHYAIKGGNMAAMRGRKLTEQIVIGTPGITRDYLQKYKC 758
Query: 217 FDMGKIKVFVLDEADVMINRQGHQDQCIRIHKCL---PSTCQMMFFSATYGTAVMQFAEI 273
D KI+ VLDEADVMI QG D I+ + + Q M FSATY V+ FA
Sbjct: 759 IDPSKIRCLVLDEADVMIYHQGFTDISTTIYNMVEDASDSVQSMLFSATYDEPVINFATK 818
Query: 274 IVSNPIIIRLLREEESLDNIKQYYVKCKSAEDKYRAICNIYGVITIGQAIIFCHTRKTAS 333
I+ N I++ L REE++L NIKQ+YV+C + KY AI N+Y + + ++IFCHT+ +
Sbjct: 819 IIKNAIVVMLKREEQALPNIKQFYVQCACRDSKYAAIVNLYSGLAVASSVIFCHTKASVM 878
Query: 334 WLSEKMSKDGHSVAVLSGELTVEQRIAVLDRFRVGLEKVLITTNVLSRGIDVEQVTLVVN 393
WL E M GH V VL G++TV +R + F+ G KVLITTNV +RGIDV QV++V+N
Sbjct: 879 WLYENMRARGHQVDVLHGDMTVVERADTIIHFKRGDFKVLITTNVFARGIDVAQVSVVIN 938
Query: 394 FDMP-----------MDMNRKADCETYLHRIGRTGRFGKAGIAINLIDSPQAMEICTDIE 442
+D+P +D + DCETYLHRIGRTGRFGK GIAINLIDS +M + +E
Sbjct: 939 YDLPIKYTDEGTPMVVDGFTQPDCETYLHRIGRTGRFGKTGIAINLIDSEDSMNMINVLE 998
Query: 443 AHFGKKIQLLDIEDAEEIEKI 463
HF KI +D + E+E I
Sbjct: 999 NHFQMKIARMDPSNLVELEAI 1019
>UniRef50_P20449 Cluster: ATP-dependent RNA helicase DBP5; n=23;
Dikarya|Rep: ATP-dependent RNA helicase DBP5 -
Saccharomyces cerevisiae (Baker's yeast)
Length = 482
Score = 384 bits (944), Expect = e-105
Identities = 194/413 (46%), Positives = 281/413 (68%), Gaps = 8/413 (1%)
Query: 56 LVESKLDIEIQ----RKDPNSPLYSVKTFEALHLKPNLLKGVYAMGFNAPSKIQETALPT 111
L+ S+ +++++ + DPNSPLYS K+F+ L L P LLKG+YAM F PSKIQE ALP
Sbjct: 66 LISSEYEVKVKLADIQADPNSPLYSAKSFDELGLAPELLKGIYAMKFQKPSKIQERALPL 125
Query: 112 LLADPPQNMIAQSQSGTGKTAAFVLAMLSRVDSNKNYPQVLCLSPTYELAIQTGEVAAKM 171
LL +PP+NMIAQSQSGTGKTAAF L ML+RV+ PQ +CL+P+ ELA QT EV +M
Sbjct: 126 LLHNPPRNMIAQSQSGTGKTAAFSLTMLTRVNPEDASPQAICLAPSRELARQTLEVVQEM 185
Query: 172 AKFCPEIKLKYAVRGEELPRGSKITDHILIGTPGKMFDWGVKFGMFDMGKIKVFVLDEAD 231
KF +I + V + + +I +++GTPG + D ++ + + KIK+FVLDEAD
Sbjct: 186 GKFT-KITSQLIVP-DSFEKNKQINAQVIVGTPGTVLDL-MRRKLMQLQKIKIFVLDEAD 242
Query: 232 VMINRQGHQDQCIRIHKCLPSTCQMMFFSATYGTAVMQFAEIIVSNPIIIRLLREEESLD 291
M+++QG DQCIR+ + LP Q++ FSAT+ AV Q+A+ IV N + L E ++D
Sbjct: 243 NMLDQQGLGDQCIRVKRFLPKDTQLVLFSATFADAVRQYAKKIVPNANTLELQTNEVNVD 302
Query: 292 NIKQYYVKCKSAEDKYRAICNIYGVITIGQAIIFCHTRKTASWLSEKMSKDGHSVAVLSG 351
IKQ Y+ CK+ DK+ + +YG++TIG +IIF T+KTA+ L K+ +GH V++L G
Sbjct: 303 AIKQLYMDCKNEADKFDVLTELYGLMTIGSSIIFVATKKTANVLYGKLKSEGHEVSILHG 362
Query: 352 ELTVEQRIAVLDRFRVGLEKVLITTNVLSRGIDVEQVTLVVNFDMPMDMNRKADCETYLH 411
+L ++R ++D FR G KVLITTNVL+RGID+ V++VVN+D+P N +AD TY+H
Sbjct: 363 DLQTQERDRLIDDFREGRSKVLITTNVLARGIDIPTVSMVVNYDLPTLANGQADPATYIH 422
Query: 412 RIGRTGRFGKAGIAINLIDSPQAMEICTDIEAHFGK-KIQLLDIEDAEEIEKI 463
RIGRTGRFG+ G+AI+ + + I + I+ +FG ++ + +D +E+EKI
Sbjct: 423 RIGRTGRFGRKGVAISFVHDKNSFNILSAIQKYFGDIEMTRVPTDDWDEVEKI 475
>UniRef50_Q54TF8 Cluster: DEAD-box RNA helicase; n=2; Dictyostelium
discoideum|Rep: DEAD-box RNA helicase - Dictyostelium
discoideum AX4
Length = 465
Score = 370 bits (911), Expect = e-101
Identities = 196/443 (44%), Positives = 288/443 (65%), Gaps = 8/443 (1%)
Query: 24 DKKHNQETDSDDVPD-TPNAADTSLLMKIIRQGLVESKLDIEIQRKDPNSPLYSVKTFEA 82
+K+ ++T+++ + T N D +GL E + ++IQ+ DPNSPLYSVKTFE
Sbjct: 15 EKEKQEQTNTNSTTESTNNQVDEEYERPGRSEGLDEFGIQLDIQQSDPNSPLYSVKTFEE 74
Query: 83 LHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMIAQSQSGTGKTAAFVLAMLSRV 142
L LKP LLKGVYAMG+N PSKIQE ALP ++ P N+IAQSQSGTGKTAAF L ML+ V
Sbjct: 75 LGLKPELLKGVYAMGYNKPSKIQEAALPIIIQSP-NNLIAQSQSGTGKTAAFTLGMLNCV 133
Query: 143 DSNKNYPQVLCLSPTYELAIQTGEVAAKMAKFCPEIKLKYAVRGEELPRGSKITDHILIG 202
D + N PQ +C+SPT ELA+QT EV +K+ +F IK + E+P+ +T+ ++IG
Sbjct: 134 DPSINAPQAICISPTKELALQTFEVISKIGQFS-NIKPLLYISEIEVPKN--VTNQVIIG 190
Query: 203 TPGKMFDWGVKFGMFDMGKIKVFVLDEADVMINRQGHQDQCIRIHKCLPSTCQMMFFSAT 262
TPGK+ + +K + +K+ VLDEAD ++ + +Q I++ LPS ++ FSAT
Sbjct: 191 TPGKILENVIK-KQLSVKFLKMVVLDEADFIVKMKNVPNQIAMINRLLPSNVKVCLFSAT 249
Query: 263 YGTAVMQFAEIIVSNPII-IRLLREEESLDNIKQYYVKCKSAEDKYRAICNIYGVITIGQ 321
+ V + + IV +P IRL R+E S++ I QY++ C S ++K + +IYG I++GQ
Sbjct: 250 FSMGVEELIKKIVQDPYTSIRLKRQELSVEKIHQYFIDCGSEDNKALILSDIYGFISVGQ 309
Query: 322 AIIFCHTRKTASWLSEKMSKDGHSVAVLSG-ELTVEQRIAVLDRFRVGLEKVLITTNVLS 380
+I+F HT TA + +KM +GHSV++L G +LT E+R + F+ G KVLITTNVL+
Sbjct: 310 SIVFVHTIATAKSVHQKMVDEGHSVSLLYGKDLTTEERFKQIKDFKDGKSKVLITTNVLA 369
Query: 381 RGIDVEQVTLVVNFDMPMDMNRKADCETYLHRIGRTGRFGKAGIAINLIDSPQAMEICTD 440
RGID+ QV+LV+N+D+P+D K D YLHRIGR GRFG++G+A++ + Q+ +
Sbjct: 370 RGIDIPQVSLVINYDVPLDEMGKPDPVHYLHRIGRVGRFGRSGVALSFVYDQQSTNKLMN 429
Query: 441 IEAHFGKKIQLLDIEDAEEIEKI 463
I H G ++ L + E ++ I
Sbjct: 430 ISTHLGVPLKELKSSEIESLDGI 452
>UniRef50_A4V6K5 Cluster: DEAD box polypeptide 19 protein; n=3;
Platyhelminthes|Rep: DEAD box polypeptide 19 protein -
Dugesia japonica (Planarian)
Length = 434
Score = 361 bits (888), Expect = 2e-98
Identities = 192/414 (46%), Positives = 265/414 (64%), Gaps = 7/414 (1%)
Query: 41 NAADTSLLMKIIRQGLVESKLDIEIQRKDPNS-PLYSVKTFEALHLKPNLLKGVYAMGFN 99
N A+ S + +R+ LVE+ I + K N+ PLYSVK+FE L LK LL G+ +MGF
Sbjct: 11 NKAEKSFINHSLRKTLVETD-PINVTIKQSNADPLYSVKSFEDLQLKSELLNGISSMGFR 69
Query: 100 APSKIQETALPTLLADPPQNMIAQSQSGTGKTAAFVLAMLSRVDSNKNYPQVLCLSPTYE 159
PS IQE ALP LL + P+N+IAQSQSGTGKTA F+L MLS++D N + Q LC++PT E
Sbjct: 70 KPSSIQERALPMLLENQPKNLIAQSQSGTGKTATFLLTMLSKIDVNDPFCQCLCMAPTRE 129
Query: 160 LAIQTGEVAAKMAKFCPEIKLKYAVRG--EELPRGSKITDHILIGTPGKMFDWGVKFGM- 216
L Q EVA M+KF +K+ A++G ++ G +I I+IGTPG + W
Sbjct: 130 LVNQIAEVAIIMSKFMNNVKITCAIKGLSPDILEG-QINSQIIIGTPGTLKFWTTDNSSL 188
Query: 217 -FDMGKIKVFVLDEADVMINRQGHQDQCIRIHKCLPSTCQMMFFSATYGTAVMQFAEIIV 275
F+ K+KVFVLDEAD++I + RI + + CQ++ FSATY VM FA V
Sbjct: 189 YFNPKKLKVFVLDEADILIETPEFLNIAKRIKSKVTNNCQILLFSATYDERVMDFAHDFV 248
Query: 276 SNPIIIRLLREEESLDNIKQYYVKCKSAEDKYRAICNIYGVITIGQAIIFCHTRKTASWL 335
P + +E +L NIKQ+Y++ KS+EDKY + +IYG+ ++GQ IIFC +RK A +L
Sbjct: 249 PQPNEFSIKPQELTLKNIKQFYIQMKSSEDKYPKLIDIYGMKSMGQCIIFCESRKMACYL 308
Query: 336 SEKMSKDGHSVAVLSGELTVEQRIAVLDRFRVGLEKVLITTNVLSRGIDVEQVTLVVNFD 395
+ + +D H ++L+GEL V +R +D FR G +VLI TN+ SRGID+ QV L++N+D
Sbjct: 309 QKALERDSHLSSLLTGELDVLERQRQIDDFRNGKSRVLIATNLCSRGIDIPQVNLIINWD 368
Query: 396 MPMDMNRKADCETYLHRIGRTGRFGKAGIAINLIDSPQAMEICTDIEAHFGKKI 449
MP + K DCETYLHRIGR+GRFGK G+ IN I + + + I I +G KI
Sbjct: 369 MPKTKDGKPDCETYLHRIGRSGRFGKTGLTINFIVNDEDLVIQQKIVDRYGAKI 422
>UniRef50_A4RIF1 Cluster: ATP-dependent RNA helicase DBP5; n=7;
Ascomycota|Rep: ATP-dependent RNA helicase DBP5 -
Magnaporthe grisea (Rice blast fungus) (Pyricularia
grisea)
Length = 504
Score = 350 bits (860), Expect = 5e-95
Identities = 175/412 (42%), Positives = 265/412 (64%), Gaps = 7/412 (1%)
Query: 55 GLVESKLDIEIQRKDPN--SPLYSVKTFEALHLKPNLLKGVYAMGFNAPSKIQETALPTL 112
GL ES D+E+Q DP+ SPL S+ +F L L ++ G+ AM F PSKIQ ALP +
Sbjct: 71 GLQESNYDVEVQLGDPDTDSPLSSISSFSELGLPQGIIDGLLAMNFKKPSKIQARALPLM 130
Query: 113 LADPPQNMIAQSQSGTGKTAAFVLAMLSRVDSNK-NYPQVLCLSPTYELAIQTGEVAAKM 171
L++PP+NMIAQSQSGTGKT AFV+ +LSRVD N+ N PQ L L+P+ ELA Q V +
Sbjct: 131 LSNPPRNMIAQSQSGTGKTGAFVVTILSRVDFNQPNQPQALALAPSRELARQIQSVIQSI 190
Query: 172 AKFCPEIKLKYAVRGEELPRGSKITDHILIGTPGKMFDWGVKFGMFDMGKIKVFVLDEAD 231
+FC + + A+ G + R + + ++++GTPG + D ++ FD+ ++K+ V+DEAD
Sbjct: 191 GQFCTGLVVDAAIPGA-ISRETGVKANVVVGTPGTVMDL-IRRRQFDVSQLKLLVVDEAD 248
Query: 232 VMINRQGHQDQCIRIHKCLPSTCQMMFFSATYGTAVMQFAEIIVSNPIIIRLLREEESLD 291
M+++QG +QC+R+ LP T Q + FSAT+ V +AE ++L ++E ++
Sbjct: 249 NMLDQQGLGEQCVRVKNMLPKTIQTLLFSATFPDHVKSYAEKFAPQANQMKLRQQELTVK 308
Query: 292 NIKQYYVKCKSAEDKYRAICNIYGVITIGQAIIFCHTRKTASWLSEKMSKDGHSVAVLSG 351
I Q Y+ C S ++KY +C +YG++TIG ++IF TR++A + +M DGH V+ L G
Sbjct: 309 GISQMYMDCPSLKEKYEVLCKLYGLMTIGSSVIFVKTRESADEIQRRMEADGHKVSALHG 368
Query: 352 ELTVEQRIAVLDRFRVGLEKVLITTNVLSRGIDVEQVTLVVNFDMPM--DMNRKADCETY 409
++R +LD FR G KVLITTNVL+RGIDV V++V+N+D+PM ++ D ETY
Sbjct: 369 AFQGQERDQLLDDFRSGKSKVLITTNVLARGIDVSSVSMVINYDIPMKGPGDQSPDAETY 428
Query: 410 LHRIGRTGRFGKAGIAINLIDSPQAMEICTDIEAHFGKKIQLLDIEDAEEIE 461
LHRIGRTGRFG+ G++I+ + ++ + I H+G + L +D ++ E
Sbjct: 429 LHRIGRTGRFGRVGVSISFVHDRKSFTALSSIAEHYGIDLIQLSPDDWDDTE 480
>UniRef50_Q5KBP5 Cluster: ATP-dependent RNA helicase DBP5; n=3;
Filobasidiella neoformans|Rep: ATP-dependent RNA
helicase DBP5 - Cryptococcus neoformans (Filobasidiella
neoformans)
Length = 546
Score = 335 bits (824), Expect = 1e-90
Identities = 189/475 (39%), Positives = 284/475 (59%), Gaps = 19/475 (4%)
Query: 5 WGQKAEELEISNKVAGLGLDKKHNQETDSD---DVPDTPNAAD-----TSLLMKIIRQGL 56
WG+ A N A G + ++D D P P++ + + ++ +GL
Sbjct: 63 WGEPAPSAPADNGWADAGASNGGSGANNNDGWFDAPVPPSSQPPKKEASDIQLQDDTEGL 122
Query: 57 VESKLDIEIQ----RKDPNSPLYSVKTFEALHLKPNLLKGVYAMGFNAPSKIQETALPTL 112
+ + +E++ + DPNSPLYSV++F+ L+L +L+KG+ A GF PSKIQE ALP L
Sbjct: 123 ITNTFQVEVKLADLQGDPNSPLYSVQSFKELNLHEDLMKGIIAAGFQKPSKIQEKALPLL 182
Query: 113 LADPPQNMIAQSQSGTGKTAAFVLAMLSRVDSNKNYPQVLCLSPTYELAIQTGEVAAKMA 172
L++PP+N+I QSQSGTGKTAAF L MLSRVD PQ +C++P+ ELA Q EV ++
Sbjct: 183 LSNPPRNLIGQSQSGTGKTAAFTLNMLSRVDPTIPTPQAICIAPSRELARQIQEVIDQIG 242
Query: 173 KFCPEIKLKYAVRGEELPRGSKITDHILIGTPGKMFDWGVKFG-MFDMGKIKVFVLDEAD 231
+F ++ A+ G R S+I ILIGTPG + D ++ + D I+V VLDEAD
Sbjct: 243 QFT-QVGTFLAIPGS-WSRNSRIDKQILIGTPGTLVDMLMRGSRILDPRMIRVLVLDEAD 300
Query: 232 VMINRQGHQDQCIRIHKCLPSTCQMMFFSATYGTAVMQFAEIIVSNPIIIRLLREEESLD 291
+I +QG +Q RI + LP Q + FSAT+ V +FA+ I L +E+ ++D
Sbjct: 301 ELIAQQGLGEQTFRIKQLLPPNVQNVLFSATFNDDVQEFADRFAPEANKIFLRKEDITVD 360
Query: 292 NIKQYYVKCKSAEDKYRAICNIYGVITIGQAIIFCHTRKTASWLSEKMSKDGHSVAVLSG 351
I+Q Y++C S + KY A+ +Y + IGQ+I+FC + TA ++E++ +GH+VA L G
Sbjct: 361 AIRQLYLECDSEDQKYEALSALYDCLVIGQSIVFCKRKVTADHIAERLISEGHAVASLHG 420
Query: 352 ELTVEQRIAVLDRFRVGLEKVLITTNVLSRGIDVEQVTLVVNFDMPMDM---NRKADCET 408
+ ++R A+LD FR G KVLITTNV++RGID+ V +VVN+D+P D+ D ET
Sbjct: 421 DKLSQERDAILDGFRNGETKVLITTNVIARGIDIPAVNMVVNYDVP-DLGPGGNGPDIET 479
Query: 409 YLHRIGRTGRFGKAGIAINLIDSPQAMEICTDIEAHFGKKIQLLDIEDAEEIEKI 463
Y+HRIGRTGRFG+ G ++ ++ I GK ++ +D +IE++
Sbjct: 480 YIHRIGRTGRFGRKGCSVIFTHDYRSKSDVERIMNTLGKPMKKIDARSTTDIEQL 534
>UniRef50_Q5CIF9 Cluster: DEAD-box RNA helicase; n=2;
Cryptosporidium|Rep: DEAD-box RNA helicase -
Cryptosporidium hominis
Length = 518
Score = 315 bits (774), Expect = 1e-84
Identities = 190/461 (41%), Positives = 273/461 (59%), Gaps = 30/461 (6%)
Query: 24 DKKHNQETDSDDVPDTPNAADTSLLMKIIRQGLVESKLDIEIQRKDPNSPLYSVKTFEAL 83
D ++T++DD+ D + + + R V++ I +Q DP + LYS K + L
Sbjct: 61 DDMERKDTENDDIDDFKSPKSDNSTFQF-RD--VQNNSSISVQTVDPKAQLYSAKDWSDL 117
Query: 84 HLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMIAQSQSGTGKTAAFVLAMLSRVD 143
+L P+LLKG+Y GFN PSKIQ ALP +L + P N+IAQ+ +G+GKTA F LAML +VD
Sbjct: 118 NLSPDLLKGIYNKGFNRPSKIQAAALPLIL-NSPMNLIAQAHNGSGKTATFALAMLGKVD 176
Query: 144 SNKNYPQVLCLSPTYELAIQTGEVAAKMAKFCPEIKLKYAVRGEELPRGSKITDHILIGT 203
+ +PQ +CL PT ELA Q +V ++ KF +G++ + I I+I T
Sbjct: 177 TRIIHPQCMCLCPTRELARQNQDVVNELGKFTGITTWLVVAQGDKYDK--TIGSQIIICT 234
Query: 204 PGKMFDWGVKFGMFDMGKIKVFVLDEADVMINRQGHQ-DQCIRIHKCLPSTCQMMFFSAT 262
PGKM D+ +K F +K+ V+DEAD MI+ + Q +I K Q++ FSAT
Sbjct: 235 PGKMQDF-LKKRSFPTEFMKLMVIDEADEMIDHRNMMASQVGQIRKFFRQNLQILLFSAT 293
Query: 263 YGTAVMQFAEIIVSNPIIIRLLREEESLDNIKQYYVKCKSAEDKYRAICNIYGVITIGQA 322
Y V FAE IV N I + +EE +L+ I+Q+YV C DK + ++Y ++IGQ+
Sbjct: 294 YHEEVRLFAEKIVPNANKINVKKEELTLNTIQQFYVICNDDADKLSFLSDLYACMSIGQS 353
Query: 323 IIFCHTRKTASWLSEKMSKDGHSVAVLSG-------ELTVEQRIAVLDRFRVGLEKVLIT 375
IIF +TRKTA ++E M +DGH+++V+ G ++ E R V+D FR G KVLI
Sbjct: 354 IIFVNTRKTAFSIAENMRRDGHAISVICGTQTNSGEKMDHEIRDQVMDSFRSGESKVLIA 413
Query: 376 TNVLSRGIDVEQVTLVVNFDMPMDMNR-------------KADCETYLHRIGRTGRFGKA 422
T+VLSRGIDV QVTLV+NFD+P+ N + + ETYLHRIGRTGRFG
Sbjct: 414 TDVLSRGIDVPQVTLVINFDIPVRFNSTNSIDIVNQISSVQVENETYLHRIGRTGRFGLN 473
Query: 423 GIAINLIDSPQAMEICTDIEAHFGKKIQLLDIEDAEEIEKI 463
GI+IN I P + + I+ ++ IQL+D +D E +E+I
Sbjct: 474 GISINFI-LPHQLSLIQQIQDYYDCNIQLID-KDLEHLEQI 512
>UniRef50_Q014Y7 Cluster: RNA helicase-like protein; n=2;
Ostreococcus|Rep: RNA helicase-like protein -
Ostreococcus tauri
Length = 492
Score = 277 bits (680), Expect = 3e-73
Identities = 167/403 (41%), Positives = 223/403 (55%), Gaps = 9/403 (2%)
Query: 69 DPNSPLYSVKTFEALHLKPNLLKGVYA-MGFNAPSKIQETALPTLLADPPQNMIAQSQSG 127
DP++P S KTFE L L LL+G+Y M F PSKIQ LP +L P +N+IAQ+ +G
Sbjct: 78 DPSTPYSSAKTFEDLGLSAELLRGLYGEMKFEKPSKIQAETLPLILMPPHRNLIAQAHNG 137
Query: 128 TGKTAAFVLAMLSRVDSNKNYPQVLCLSPTYELAIQTGEVAAKMAKFCPEIKLKYAVRGE 187
+GKT F L MLSR+D PQ L + PT EL +Q V +M K+ A
Sbjct: 138 SGKTTCFTLGMLSRIDPAVKTPQGLMICPTRELVVQNVSVMERMGKYTGITIASTADPKW 197
Query: 188 ELPRGSKITDHILIGTPGKMFDWGVKFGMFDMGKIKVFVLDEADVMINRQGHQDQCIRIH 247
+ +KI D +IGTPGK+ W ++ +K+ V DEAD M+ GH+ +I
Sbjct: 198 DNTNRNKIVDQAVIGTPGKILRW-MRERQLACNNMKILVFDEADHMMATDGHRVDSTKIL 256
Query: 248 KCLPSTC---QMMFFSATYGTAVMQFAEIIVSNPIIIRLLREEESLDNIKQYYVKCKSAE 304
K L + Q++ FSAT+ AV FA +V N I + E SLD IKQ+ V S +
Sbjct: 257 KHLSMSAKAWQVLLFSATFNEAVKSFATKVVPNANQIFIPATELSLDVIKQHRVVVNSVD 316
Query: 305 DKYRAICN-IYGVIT-IGQAIIFCHTRKTASWLSEKMSKDGHSVAVLSGELTVEQRIAVL 362
K + I+ + IGQ IIF TR+ A L M+ G+ V+ G++ R V+
Sbjct: 317 AKDVLLKEKIFPLCDKIGQTIIFVRTREGARRLHASMNASGYKCTVIEGQMEHSDRDRVV 376
Query: 363 DRFRVGLEKVLITTNVLSRGIDVEQVTLVVNFDMPMDMN--RKADCETYLHRIGRTGRFG 420
FR GL K+LI T+VLSRG+DV VTLV+N+DMP++ + R + ETYLHRIGR+GRFG
Sbjct: 377 KEFRDGLTKILIATDVLSRGLDVSTVTLVINYDMPVEFHNPRSPNYETYLHRIGRSGRFG 436
Query: 421 KAGIAINLIDSPQAMEICTDIEAHFGKKIQLLDIEDAEEIEKI 463
K G A NLI IC IE HF KI + D EK+
Sbjct: 437 KKGAAFNLILGDSERAICDQIELHFNHKIPEVHFNDDVTFEKV 479
>UniRef50_Q4N9Q9 Cluster: DEAD box RNA helicase, putative; n=3;
Piroplasmida|Rep: DEAD box RNA helicase, putative -
Theileria parva
Length = 501
Score = 268 bits (658), Expect = 2e-70
Identities = 165/399 (41%), Positives = 240/399 (60%), Gaps = 25/399 (6%)
Query: 83 LHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMIAQSQSGTGKTAAFVLAMLSRV 142
L L P+LLKG+ MGF PSKIQ+ ALP +L N+IAQ+++G+GKTA F LAMLS+V
Sbjct: 104 LPLSPDLLKGIQNMGFAKPSKIQQCALPLILGSCT-NIIAQAKNGSGKTATFALAMLSKV 162
Query: 143 DSNKNYPQVLCLSPTYELAIQTGEVAAKMAKFCPEIKLKYAVRGEELPRGSKITD-HILI 201
+ N Q LC+ PT ELA Q +V K+ +F +IK V + PR H+ +
Sbjct: 163 NVNVPLVQALCICPTRELATQNVQVIQKLGQFT-QIKCFLGV--PQCPRYEDNDQYHLYV 219
Query: 202 GTPGKMFDWGVKFGMFDMGKIKVFVLDEADVMINRQGHQD-QCIRIHKCLPSTCQMMFFS 260
GTPGK D+ +K + ++ + + VLDEAD +IN+Q + Q ++I Q++ FS
Sbjct: 220 GTPGKTMDF-LKKRIMNVTNVVMLVLDEADELINQQNNMGPQVLQIRNFFRGPVQIVLFS 278
Query: 261 ATYGTAVMQFAEIIVSNPIIIRLLREEESLDNIKQYYVKCKSAEDKYRAICNIYGVITIG 320
AT+ V FA I +I++ RE+ +LD I Q Y+ C EDK+ + IY + +G
Sbjct: 279 ATFSDNVYNFATKIAPRAHVIQVKREQLTLDCIDQRYMICNDDEDKFNKLSEIYSSMIVG 338
Query: 321 QAIIFCHTRKTASWLSEKMSKDGHSVAVLSGEL---------TVEQRIAVLDRFRVGLEK 371
Q++IF ++R+TA LS++M GH+V++L G L T E R ++ F+ G K
Sbjct: 339 QSVIFVNSRETAFKLSQRMRDQGHAVSLLCGTLGPSSGPNSMTPEIRDRIMKEFKDGETK 398
Query: 372 VLITTNVLSRGIDVEQVTLVVNFDMPMDMN------RKADC-ETYLHRIGRTGRFGKAGI 424
VLI T+VL+RGIDV QVTLV+N+++PM + K+ C ETYLHRIGRTGRFG G+
Sbjct: 399 VLICTDVLARGIDVPQVTLVINYELPMSYSGAKTAELKSVCMETYLHRIGRTGRFGVRGM 458
Query: 425 AINLIDSPQAMEICTDIEAHFGKKIQLLDIEDAEEIEKI 463
AIN+I + M + I+ + + LL+ D EE+E +
Sbjct: 459 AINMI-TVNEMALIESIKQFYKCNVDLLEC-DPEELENM 495
>UniRef50_Q93ZG7 Cluster: DEAD-box ATP-dependent RNA helicase 38;
n=4; core eudicotyledons|Rep: DEAD-box ATP-dependent RNA
helicase 38 - Arabidopsis thaliana (Mouse-ear cress)
Length = 496
Score = 263 bits (645), Expect = 6e-69
Identities = 159/448 (35%), Positives = 247/448 (55%), Gaps = 14/448 (3%)
Query: 25 KKHNQETDSDDVPDTPNAADT-SLLMKIIRQGLVESKLDIEIQR-KDPNSPLYSVKTFEA 82
KK D DD + + ++ S+ + ++E D I+ ++P S FE
Sbjct: 36 KKWGDVEDDDDEEEAVSELNSLSIKEEEKPDSILEEPEDSNIKAVTSGDTPYTSASRFED 95
Query: 83 LHLKPNLLKGVYA-MGFNAPSKIQETALPTLLADPPQNMIAQSQSGTGKTAAFVLAMLSR 141
L+L P L+KG+Y M F PSKIQ +LP ++ P +++IAQ+ +G+GKT FVL MLSR
Sbjct: 96 LNLSPELMKGLYVEMKFEKPSKIQAISLPMIMTPPHKHLIAQAHNGSGKTTCFVLGMLSR 155
Query: 142 VDSNKNYPQVLCLSPTYELAIQTGEVAAKMAKF---CPEIKLKYAVRG-EELPRGSKITD 197
VD PQ LC+ PT ELA Q EV KM KF E+ + + RG RG+ ++
Sbjct: 156 VDPTLREPQALCICPTRELANQNMEVLQKMGKFTGITAELAVPDSTRGAPAATRGAPVSA 215
Query: 198 HILIGTPGKMFDWGVKFGMFDMGKIKVFVLDEADVMINRQGHQDQCIRIHKCL---PSTC 254
H++IGTPG + W + F + +K+ V DEAD M+ G +D ++I K +
Sbjct: 216 HVVIGTPGTLKKW-MAFKRLGLNHLKILVFDEADHMLATDGFRDDSLKIMKDIGRVNPNF 274
Query: 255 QMMFFSATYGTAVMQFAEIIVSNPIIIRLLREEESLDNIKQYYVKCKSAEDKYRAICN-I 313
Q++ FSAT+ V F V +P + + RE+ +LD++KQY V C ++K I + I
Sbjct: 275 QVLLFSATFNETVKDFVARTVKDPNQLFVKREDLALDSVKQYKVVCPKEQNKIEVIKDQI 334
Query: 314 YGVITIGQAIIFCHTRKTASWLSEKMSKDGHSVAVLSGELTVEQRIAVLDRFRVGLEKVL 373
+ IGQ IIF T+ +A + + +++ G+ V + G LT R ++ F+ L +VL
Sbjct: 335 MELGDIGQTIIFVKTKASAQKVHKALAEMGYDVTSVHGNLTESDRDKIVKEFKECLTQVL 394
Query: 374 ITTNVLSRGIDVEQVTLVVNFDMPMDMNR-KADCETYLHRIGRTGRFGKAGIAIN-LIDS 431
I T+V++RG D ++V LVVN+++P + D E YLHR+GR GRFG+ G N L+D
Sbjct: 395 IATDVIARGFDQQRVNLVVNYNLPTKYETGEPDYEVYLHRVGRAGRFGRKGAVFNLLLDD 454
Query: 432 PQAMEICTDIEAHFGKKIQLLDIEDAEE 459
E+ IE +F ++ + ++EE
Sbjct: 455 GWDKEVMEKIEKYFEANVKEIKSWNSEE 482
>UniRef50_P38919 Cluster: Eukaryotic initiation factor 4A-III;
n=366; root|Rep: Eukaryotic initiation factor 4A-III -
Homo sapiens (Human)
Length = 411
Score = 260 bits (637), Expect = 6e-68
Identities = 137/385 (35%), Positives = 238/385 (61%), Gaps = 15/385 (3%)
Query: 79 TFEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMIAQSQSGTGKTAAFVLAM 138
TF+ + L+ +LL+G+YA GF PS IQ+ A+ ++ +++IAQSQSGTGKTA F +++
Sbjct: 39 TFDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKG--RDVIAQSQSGTGKTATFSISV 96
Query: 139 LSRVDSNKNYPQVLCLSPTYELAIQTGEVAAKMAKFCPEIKLKYAVRGEELPRGSKITD- 197
L +D Q L L+PT ELA+Q + + + ++ + G + + D
Sbjct: 97 LQCLDIQVRETQALILAPTRELAVQIQKGLLALGDYM-NVQCHACIGGTNVGEDIRKLDY 155
Query: 198 --HILIGTPGKMFDWGVKFGMFDMGKIKVFVLDEADVMINRQGHQDQCIRIHKCLPSTCQ 255
H++ GTPG++FD ++ IK+ VLDEAD M+N+ G ++Q +++ LP Q
Sbjct: 156 GQHVVAGTPGRVFDM-IRRRSLRTRAIKMLVLDEADEMLNK-GFKEQIYDVYRYLPPATQ 213
Query: 256 MMFFSATYGTAVMQFAEIIVSNPIIIRLLREEESLDNIKQYYVKCKSAEDKYRAICNIYG 315
++ SAT +++ +++PI I + R+E +L+ IKQ++V + E K+ +C++Y
Sbjct: 214 VVLISATLPHEILEMTNKFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYD 273
Query: 316 VITIGQAIIFCHTRKTASWLSEKMSKDGHSVAVLSGELTVEQRIAVLDRFRVGLEKVLIT 375
+TI QA+IFC+T++ WL+EKM + +V+ + G++ ++R +++ FR G +VLI+
Sbjct: 274 TLTITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVLIS 333
Query: 376 TNVLSRGIDVEQVTLVVNFDMPMDMNRKADCETYLHRIGRTGRFGKAGIAINLIDSPQAM 435
T+V +RG+DV QV+L++N+D+P NR E Y+HRIGR+GR+G+ G+AIN + + +
Sbjct: 334 TDVWARGLDVPQVSLIINYDLP--NNR----ELYIHRIGRSGRYGRKGVAINFVKNDD-I 386
Query: 436 EICTDIEAHFGKKIQLLDIEDAEEI 460
I DIE ++ +I + + A+ I
Sbjct: 387 RILRDIEQYYSTQIDEMPMNVADLI 411
>UniRef50_Q14240 Cluster: Eukaryotic initiation factor 4A-II; n=37;
Bilateria|Rep: Eukaryotic initiation factor 4A-II - Homo
sapiens (Human)
Length = 407
Score = 257 bits (630), Expect = 4e-67
Identities = 148/388 (38%), Positives = 235/388 (60%), Gaps = 16/388 (4%)
Query: 77 VKTFEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMIAQSQSGTGKTAAFVL 136
V F+ ++LK +LL+G+YA GF PS IQ+ A+ + ++IAQ+QSGTGKTA F +
Sbjct: 32 VDNFDDMNLKESLLRGIYAYGFEKPSAIQQRAIIPCIKG--YDVIAQAQSGTGKTATFAI 89
Query: 137 AMLSRVDSNKNYPQVLCLSPTYELAIQTGEVAAKMAKF----CPEIKLKYAVRGEELPRG 192
++L +++ Q L L+PT ELA Q +V + + C VR E + +
Sbjct: 90 SILQQLEIEFKETQALVLAPTRELAQQIQKVILALGDYMGATCHACIGGTNVRNE-MQKL 148
Query: 193 SKITDHILIGTPGKMFDWGVKFGMFDMGKIKVFVLDEADVMINRQGHQDQCIRIHKCLPS 252
HI++GTPG++FD + IK+FVLDEAD M++R G +DQ I + L +
Sbjct: 149 QAEAPHIVVGTPGRVFDM-LNRRYLSPKWIKMFVLDEADEMLSR-GFKDQIYEIFQKLNT 206
Query: 253 TCQMMFFSATYGTAVMQFAEIIVSNPIIIRLLREEESLDNIKQYYVKCKSAEDKYRAICN 312
+ Q++ SAT T V++ + + +PI I + +EE +L+ IKQ+Y+ + E K +C+
Sbjct: 207 SIQVVLLSATMPTDVLEVTKKFMRDPIRILVKKEELTLEGIKQFYINVEREEWKLDTLCD 266
Query: 313 IYGVITIGQAIIFCHTRKTASWLSEKMSKDGHSVAVLSGELTVEQRIAVLDRFRVGLEKV 372
+Y +TI QA+IF +TR+ WL+EKM +V+ L G++ ++R ++ FR G +V
Sbjct: 267 LYETLTITQAVIFLNTRRKVDWLTEKMHARDFTVSALHGDMDQKERDVIMREFRSGSSRV 326
Query: 373 LITTNVLSRGIDVEQVTLVVNFDMPMDMNRKADCETYLHRIGRTGRFGKAGIAINLIDSP 432
LITT++L+RGIDV+QV+LV+N+D+P NR E Y+HRIGR GRFG+ G+AIN + +
Sbjct: 327 LITTDLLARGIDVQQVSLVINYDLP--TNR----ENYIHRIGRGGRFGRKGVAINFV-TE 379
Query: 433 QAMEICTDIEAHFGKKIQLLDIEDAEEI 460
+ I DIE + ++ + + A+ I
Sbjct: 380 EDKRILRDIETFYNTTVEEMPMNVADLI 407
>UniRef50_A2DVG1 Cluster: DEAD/DEAH box helicase family protein;
n=3; Trichomonas vaginalis G3|Rep: DEAD/DEAH box
helicase family protein - Trichomonas vaginalis G3
Length = 478
Score = 239 bits (585), Expect = 1e-61
Identities = 137/385 (35%), Positives = 224/385 (58%), Gaps = 15/385 (3%)
Query: 77 VKTFEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMIAQSQSGTGKTAAFVL 136
V F+ + L P LL+GVY+ GF APS+IQ A+ + +++IAQ+QSGTGKT AF +
Sbjct: 90 VDDFDQMDLPPALLQGVYSYGFRAPSEIQAIAIGAIRDPSNRHVIAQAQSGTGKTGAFSI 149
Query: 137 AMLSRVDSNKNYPQVLCLSPTYELAIQTGEVAAKMAKFCPEIKLKYAVRGEELPRGSKIT 196
+LS++D ++ Q L L+PT ELA Q V ++ P + + + G + ++
Sbjct: 150 GVLSKIDVSQKTTQALVLAPTRELATQIFNVFKEIGSRIPGLDIAIFIGGAQRVVDAQAR 209
Query: 197 ----DHILIGTPGKMFDWGVKFGMFDMGKIKVFVLDEADVMINRQGHQDQCIRIHKCLPS 252
HI I TPG+ D V G + K+ VLDEAD M++ +Q I + P
Sbjct: 210 AASHPHICICTPGRALDLIVS-GHLRVQNFKMAVLDEADQMLS-DNFIEQVNDIMEYFPE 267
Query: 253 TCQMMFFSATYGTAVMQFAEIIVSNPIIIRLLREEESLDNIKQYYVKCKSAEDKYRAICN 312
Q++ FSAT ++ +++P I + +E+ +L+ IKQ+YV + +K+ + +
Sbjct: 268 DVQILLFSATISQSIFHIMNTFMNDPFRILIKKEQLTLEGIKQFYVDVQETSNKFDCLLD 327
Query: 313 IYGVITIGQAIIFCHTRKTASWLSEKMSKDGHSVAVLSGELTVEQRIAVLDRFRVGLEKV 372
IYG ++I +AIIF +++ ++SE++ + G VA + L +R ++ FR G +V
Sbjct: 328 IYGSVSIQKAIIFANSKNAVDYISEQLQQHGFGVAPIHAGLDQLERDRIMRDFRTGTARV 387
Query: 373 LITTNVLSRGIDVEQVTLVVNFDMPMDMNRKADCETYLHRIGRTGRFGKAGIAINLIDSP 432
LI+T++L+RGIDV+QVTLV+NF++P + E Y+HRIGR+GR+G+ G+AIN+ D
Sbjct: 388 LISTDLLARGIDVQQVTLVINFELPKKL------EQYIHRIGRSGRYGRKGVAINICDH- 440
Query: 433 QAMEICTDIEAHFGKKIQLL--DIE 455
+ M + ++ H+ I L DIE
Sbjct: 441 EDMNVIEMLKNHYMTTINELPSDIE 465
>UniRef50_Q10RI7 Cluster: DEAD-box ATP-dependent RNA helicase 38;
n=4; Oryza sativa|Rep: DEAD-box ATP-dependent RNA
helicase 38 - Oryza sativa subsp. japonica (Rice)
Length = 505
Score = 238 bits (583), Expect = 2e-61
Identities = 146/422 (34%), Positives = 226/422 (53%), Gaps = 17/422 (4%)
Query: 56 LVESKLDIEIQRKDPNSPLY-SVKTFEALHLKPNLLKGVY-AMGFNAPSKIQETALPTLL 113
L++ + +IQ +Y S FE L L P LLKG++ MGF+ PSKIQ LP +L
Sbjct: 77 LLDDSDESQIQAVTSGGTVYESAAAFEDLKLTPELLKGLHDEMGFSRPSKIQAVTLPMIL 136
Query: 114 ADPPQNMIAQSQSGTGKTAAFVLAMLSRVDSNKNYPQVLCLSPTYELAIQTGEVAAKMAK 173
P +++IAQ+ +G+GKT FVL MLSRVD N+ Q +C+ PT ELA Q V +M K
Sbjct: 137 TPPYKDLIAQAHNGSGKTTCFVLGMLSRVDPNRKVTQAICICPTRELAQQNKSVLMRMGK 196
Query: 174 FCPEIKLKYAVRGEE-----LPRGSKITDHILIGTPGKMFDWGVKFGMFDMGKIKVFVLD 228
F I A+ + + + KITD ++IGT G + W + IK+ V D
Sbjct: 197 F-TGITCACAIPPAQKDYVPIAKMPKITDQVVIGTSGTLMKW-INHKKILTNDIKILVFD 254
Query: 229 EADVMINRQGHQDQCIRIHKCLPST---CQMMFFSATYGTAVMQFAEIIVSNPIIIRLLR 285
EAD M+ G + RI + + + CQ++ FSAT+ V F ++ + I + +
Sbjct: 255 EADHMLAEDGFRSDSERIMRDIQRSAGGCQVLLFSATFNERVKDFVTRVIKDGNQIFVKK 314
Query: 286 EEESLDNIKQYYVKCKSAEDKYRAICN-IYGV-ITIGQAIIFCHTRKTASWLSEKMSKDG 343
EE +L+ +KQY V+ K I + I+ +GQ IIF T+++ + ++ +
Sbjct: 315 EELTLEKVKQYKVQVPDERAKIAVIKDKIFEFGQKVGQVIIFVRTKQSTKDVHNALTLED 374
Query: 344 HSVAVLSGELTVEQRIAVLDRFRVGLEKVLITTNVLSRGIDVEQVTLVVNFDMPMDMNRK 403
+ + + G L +R ++ F+ G KVLI+T+VL+RG D QV LV+N+DMP+ +
Sbjct: 375 YVCSSIQGSLDQSEREKIIQEFKNGYTKVLISTDVLARGFDQAQVNLVINYDMPIKFGTR 434
Query: 404 --ADCETYLHRIGRTGRFGKAGIAINLIDSPQAMEICTDIEAHFGKKI-QLLDIEDAEEI 460
D E YLHRIGR GRFG+ G NL+ + IE +F + ++ + + E+
Sbjct: 435 DEPDYEVYLHRIGRAGRFGRKGAVFNLLCGETDNTVMRKIETYFQHNVPEVRNWQSEEDF 494
Query: 461 EK 462
E+
Sbjct: 495 ER 496
>UniRef50_A0D232 Cluster: Chromosome undetermined scaffold_35, whole
genome shotgun sequence; n=5; Paramecium
tetraurelia|Rep: Chromosome undetermined scaffold_35,
whole genome shotgun sequence - Paramecium tetraurelia
Length = 434
Score = 237 bits (580), Expect = 4e-61
Identities = 125/390 (32%), Positives = 236/390 (60%), Gaps = 17/390 (4%)
Query: 77 VKTFEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMIAQSQSGTGKTAAFVL 136
V+TFE L L +LL+G+++ GF PS IQ+ A+ ++ ++++AQ+QSGTGKT F +
Sbjct: 55 VETFEDLTLSKDLLRGIFSYGFERPSAIQQKAIKPIILG--KDVLAQAQSGTGKTGTFTI 112
Query: 137 AMLSRVDSNKNYPQVLCLSPTYELAIQTGEVAAKMAKFCPEIKLKYAVRG---EELPRGS 193
L R+D N+ QV+ L+P ELA Q +V + ++ I+ + G +E
Sbjct: 113 GALQRIDPNQRKTQVIILAPVRELAKQIYDVVKGIGQYL-NIEAFCCIGGTSTQETREKC 171
Query: 194 KITDHILIGTPGKMFDWGVKFGMFDMGKIKVFVLDEADVMINRQGHQDQCIRIHKCLPST 253
K HI+I TPG++ D +K D +++ V+DEAD M++ QG D I K +P
Sbjct: 172 KQGVHIIIATPGRLIDM-MKNKYLDATFMRLLVVDEADQMLD-QGFSDNFAEILKMVPGD 229
Query: 254 CQMMFFSATYGTAVMQFAEIIVSNPIIIRLLREEE-SLDNIKQYYVKCKSAEDKYRAICN 312
Q+ FSAT+ +++ ++ + + L+++E+ +L+ I+Q+Y+ + + K++ +
Sbjct: 230 IQIALFSATFPQEIIELSKQFLRDGTAKILVKKEQLTLEGIRQFYIAIQQEDQKFKVLVE 289
Query: 313 IYGVITIGQAIIFCHTRKTASWLSEKMSKDGHSVAVLSGELTVEQRIAVLDRFRVGLEKV 372
+Y +T+ Q+I+FC+++KT L +K++ +G +V+ + ++ ++R V+ F+ G ++
Sbjct: 290 LYKNLTVSQSILFCNSKKTVDDLYDKLTAEGFTVSKIHSQMEQKEREQVMQEFKKGAARI 349
Query: 373 LITTNVLSRGIDVEQVTLVVNFDMPMDMNRKADCETYLHRIGRTGRFGKAGIAINLIDSP 432
L++T+++ RGIDV+Q++LV+N++ P E Y+HR+GR GR+G+ G+AIN++ +
Sbjct: 350 LVSTDLMGRGIDVQQLSLVINYEFPRLK------EQYIHRVGRAGRYGRKGVAINMV-AQ 402
Query: 433 QAMEICTDIEAHFGKKIQLLDIEDAEEIEK 462
Q + ++E ++ KI + +D E+EK
Sbjct: 403 QEANLLLEVEKYYNTKIDEMP-KDLAEVEK 431
>UniRef50_A1U3D6 Cluster: DEAD/DEAH box helicase domain protein;
n=1; Marinobacter aquaeolei VT8|Rep: DEAD/DEAH box
helicase domain protein - Marinobacter aquaeolei (strain
ATCC 700491 / DSM 11845 / VT8)(Marinobacter
hydrocarbonoclasticus (strain DSM 11845))
Length = 528
Score = 225 bits (550), Expect = 2e-57
Identities = 135/361 (37%), Positives = 201/361 (55%), Gaps = 14/361 (3%)
Query: 72 SPLYSVKTFEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMIAQSQSGTGKT 131
S S +F L L P +L+ V A+G+ PS IQ ++P LLA +++ +Q+GTGKT
Sbjct: 18 STFMSELSFAELGLDPAVLEAVSAVGYETPSPIQAQSIPALLAG--NHLLGVAQTGTGKT 75
Query: 132 AAFVLAMLSRVDSNKNYPQVLCLSPTYELAIQTGEVAAKMAKFCPEIKLKYAVRGEELP- 190
AAF L +LSR+D+N PQ+L L+PT ELAIQ E A + G++
Sbjct: 76 AAFALPLLSRIDANVAEPQILVLAPTRELAIQVAEAFTTYASKFRNFHVLPIYGGQDFSP 135
Query: 191 --RGSKITDHILIGTPGKMFDWGVKFGMFDMGKIKVFVLDEADVMINRQGHQDQCIRIHK 248
RG K +++GTPG+M D ++ G + +K VLDEAD M+ R G D I
Sbjct: 136 QIRGLKRGAQVIVGTPGRMLDH-LRKGTLKLDGLKALVLDEADEML-RMGFIDDVEAILA 193
Query: 249 CLPSTCQMMFFSATYGTAVMQFAEIIVSNPIIIRLLREEESLDNIKQYYVKCKSAEDKYR 308
P TCQ FSAT + + A+ + N +R+ E +++ I Q+ + AE K
Sbjct: 194 KTPDTCQRALFSATMPPQIKKVAQTYLKNATEVRIESETRTVERIAQFVLPVY-AERKLD 252
Query: 309 AICNIYGVITIGQAIIFCHTRKTASWLSEKMSKDGHSVAVLSGELTVEQRIAVLDRFRVG 368
A+ I V +IIF T+ + L+EK+S GH+VA LSG+L QR ++ + G
Sbjct: 253 ALTRILEVEPFDASIIFVRTKAETTMLAEKLSARGHAVAPLSGDLNQRQREQTVEDLKRG 312
Query: 369 LEKVLITTNVLSRGIDVEQVTLVVNFDMPMDMNRKADCETYLHRIGRTGRFGKAGIAINL 428
+ ++I T+V +RG+DV ++T V+N+D+P D E Y+HR+GRTGR G+ G AI L
Sbjct: 313 KKDIIIATDVAARGLDVPRITHVINYDVPY------DTEAYIHRVGRTGRAGRTGKAILL 366
Query: 429 I 429
+
Sbjct: 367 V 367
>UniRef50_A6N5Z1 Cluster: Helicase; n=7; Plasmodium|Rep: Helicase -
Plasmodium falciparum
Length = 576
Score = 225 bits (549), Expect = 3e-57
Identities = 148/418 (35%), Positives = 234/418 (55%), Gaps = 40/418 (9%)
Query: 75 YSVKTFEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMIAQSQSGTGKTAAF 134
+S T+E L + L++ + + F PSKIQ ALP +L+ +N+IAQSQ+G+GKT F
Sbjct: 157 HSKNTWEELKIDNELIQILTYLKFLGPSKIQAYALPIILSSN-KNLIAQSQNGSGKTLTF 215
Query: 135 VLAMLSRVDSNKNYPQVLCLSPTYELAIQTGEVAAKMAKFCPEIKLKYAVRGEELPRGSK 194
V+AML +++ + Q +C+ PT EL+ Q +V K+ +K+ AV E R +K
Sbjct: 216 VIAMLCKINRTLSSLQAVCICPTRELSQQNYDVVCNFTKYL-NVKVFLAVPLCE--RYNK 272
Query: 195 ITDH-ILIGTPGKMFDWGVKFGMFDMGKIKVFVLDEADVMIN-RQGHQDQCIRIHKCLPS 252
+ I +GTPGK D+ +K D IK+FVLDEAD +I+ + Q I + LP
Sbjct: 273 SGGYQIYVGTPGKTLDF-LKRKFIDTKNIKLFVLDEADDLIDIKNNMSSQVETIKRFLPR 331
Query: 253 TCQMMFFSATYGTAVMQFAEIIVSNPIIIRLLREEESLDNIKQYYVKCKSAEDKYRAICN 312
+CQ++ FSATY +V +FA+ I + +E+ +L +KQYY+ ++ E KY +
Sbjct: 332 SCQILLFSATYNDSVRKFADQFAPKATKISVRQEDLTLKCVKQYYLITENDEQKYYYLSE 391
Query: 313 IYGVITIGQAIIFCHTRKTASWLSEKMSKDGHSVAVLSGELTVEQ--------------- 357
+Y +TI Q +IF +++K+A L M+++ H+V ++ + + +
Sbjct: 392 LYCSMTISQCVIFVNSKKSAYNLYNFMTENSHNVTLICADSIISRFTKNQIQKANVLGMD 451
Query: 358 ---RIAVLDRFRVGLEKVLITTNVLSRGIDVEQVTLVVNFDMPM------------DMNR 402
R ++ F+ G+ KVLI T++LSRGIDV ++LV+NFD+P N+
Sbjct: 452 PKTRDTLMADFKKGISKVLICTDLLSRGIDVPSISLVINFDLPYIYQGRIGDTLNNTSNQ 511
Query: 403 KADCETYLHRIGRTGRFGKAGIAINLIDSPQAMEICTDIEAHFGKKIQLLDIEDAEEI 460
+ + ETY+HRIGRTGRFG G+AIN I Q I IE ++ K + D+E E+
Sbjct: 512 RVNMETYIHRIGRTGRFGTKGMAINFISKNQMSHI-KQIEEYY--KCSIADLEFDSEL 566
>UniRef50_Q8SSD2 Cluster: ATP-DEPENDENT RNA HELICASE INVOLVED IN
mRNA EXPORT FROM THE NUCLEUS; n=1; Encephalitozoon
cuniculi|Rep: ATP-DEPENDENT RNA HELICASE INVOLVED IN
mRNA EXPORT FROM THE NUCLEUS - Encephalitozoon cuniculi
Length = 425
Score = 221 bits (541), Expect = 2e-56
Identities = 141/410 (34%), Positives = 229/410 (55%), Gaps = 19/410 (4%)
Query: 57 VESKLDIEIQR--KDPNSPLYSVKTFEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLA 114
+E+ LD I D L + F + L LLK +Y GF PS IQ++A+P +L
Sbjct: 28 IETGLDGSISGVGTDRGQKLLVAEHFSDMGLSDELLKAIYNQGFEKPSLIQKSAIPHILR 87
Query: 115 DPPQNMIAQSQSGTGKTAAFVLAMLSRVDSNKNYPQVLCLSPTYELAIQTGEVAAKMAKF 174
N++ QS+SGTGKT A+ +L + QV+ ++PT EL+ Q EV + +A
Sbjct: 88 G--HNVVVQSKSGTGKTIAYTCGVLGNTKIGER-TQVMVVTPTRELSTQVTEVISGLAGP 144
Query: 175 CPEIKLKYAVRGEELPRGSKITDHILIGTPGKMFDWGVKFGMFDMGKIKVFVLDEADVMI 234
IK+ A++ + I + +++G+PG + ++ G + +K+ VLDEAD+++
Sbjct: 145 LG-IKVFSALKNKIT---DSIGEEVVVGSPGTILKL-MELGKLNYKGVKMIVLDEADILL 199
Query: 235 NRQGHQDQCIRIHKCLPSTCQMMFFSATYGTAVMQFAEIIVSNPIIIRLLREEESL-DNI 293
++ Q RI K + S QM+FFSAT+ V Q E P +++ E D I
Sbjct: 200 DKDMMGTQTFRILKLI-SGAQMIFFSATFSEQVKQTIEFYA--PDAVKMYEERNGKPDEI 256
Query: 294 KQYYVKCKSAEDKYRAICNIYGVITIGQAIIFCHTRKTASWLSEKMSKDGHSVAVLSGEL 353
K +Y++ + E+K RA+ ++Y ++I Q IIF T+ T ++L +K+ D HSV+ L G+L
Sbjct: 257 KLFYIEAEG-ENKRRALKSLYEYLSISQMIIFVSTKATVNYLRKKLEDDLHSVSCLHGDL 315
Query: 354 TVEQRIAVLDRFRVGLEKVLITTNVLSRGIDVEQVTLVVNFDMPMDMNRKADCETYLHRI 413
+E+R + FR K+L+TT+V SRG+D+ QV L+VN+D+P+ A +TY+HRI
Sbjct: 316 EIEEREKAVGDFRSSKSKILLTTDVFSRGMDIPQVNLIVNYDLPI-YRGVASTQTYIHRI 374
Query: 414 GRTGRFGKAGIAINLI-DSPQAMEICTDIEAHF-GKKIQLLDIED-AEEI 460
GR+GRFG+ G ++ + D + E F KK + +E+ AEE+
Sbjct: 375 GRSGRFGRTGFVVDFVRDEELEAYLSFQKELKFASKKFTIRALEEVAEEL 424
>UniRef50_Q6AMK6 Cluster: Probable ATP-dependent RNA helicase; n=1;
Desulfotalea psychrophila|Rep: Probable ATP-dependent
RNA helicase - Desulfotalea psychrophila
Length = 632
Score = 219 bits (536), Expect = 1e-55
Identities = 139/395 (35%), Positives = 222/395 (56%), Gaps = 14/395 (3%)
Query: 70 PNSPLYSVKTFEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMIAQSQSGTG 129
P +P+ +F +LK +L+ + +GF+ P+ IQE A+P LLA ++I Q+Q+GTG
Sbjct: 47 PVAPVAPAVSFTDFNLKSDLVANLVKLGFSQPTPIQEKAIPLLLAG--SDLIGQAQTGTG 104
Query: 130 KTAAFVLAMLSRVDSNKNYPQVLCLSPTYELAIQTGEVAAKMA-KFCPEIKLKYAVRGEE 188
KTAAF L +L+ +D +K Q L L+PT ELA Q G+ A + + + Y +
Sbjct: 105 KTAAFGLPLLNNIDFSKKCVQALVLAPTRELAQQVGDALATYSGDDGRNVLVVYGGSSYQ 164
Query: 189 LPRGS-KITDHILIGTPGKMFDWGVKFGMFDMGKIKVFVLDEADVMINRQGHQDQCIRIH 247
G + +++GTPG++ D ++ G + ++K VLDEAD M++ G D I
Sbjct: 165 AQVGGLRRGARVVVGTPGRLLDL-IRQGSLKLDQLKTLVLDEADEMLS-MGFIDDIETIL 222
Query: 248 KCLPSTCQMMFFSATYGTAVMQFAEIIVSNPIIIRLLREEESLDNIKQYYVKCKSAEDKY 307
P Q M FSAT + VM A + +P I + ++ +I+Q Y ++ DK
Sbjct: 223 SQTPKDRQTMLFSATLSSRVMSIANRYLHSPESISISPKQMIGSSIEQRYYLINNS-DKI 281
Query: 308 RAICNIYGVITIGQAIIFCHTRKTASWLSEKMSKDGHSVAVLSGELTVEQRIAVLDRFRV 367
AI ++ V T+ A+IF TR T S L+ ++ G + LSG+L+ E R VL RF+
Sbjct: 282 AAITRVFEVETVESALIFARTRATVSELANELISRGFAAEGLSGDLSQEARTRVLSRFKK 341
Query: 368 GLEKVLITTNVLSRGIDVEQVTLVVNFDMPMDMNRKADCETYLHRIGRTGRFGKAGIAIN 427
G KVL+ T+V +RG+D++ ++ V N+D+P D E Y+HRIGRTGR G++G AI+
Sbjct: 342 GQIKVLVATDVAARGLDIDDISHVFNYDLP------EDPEVYVHRIGRTGRAGRSGTAIS 395
Query: 428 LIDSPQAMEICTDIEAHFGKKIQLLDIEDAEEIEK 462
L+ + + + IE + GKK+ ++ E+IE+
Sbjct: 396 LV-TLRDRWMHRRIEQYTGKKLIKGELPTVEQIEE 429
>UniRef50_Q5KJI2 Cluster: ATP-dependent RNA helicase DHH1; n=4;
Dikarya|Rep: ATP-dependent RNA helicase DHH1 -
Cryptococcus neoformans (Filobasidiella neoformans)
Length = 625
Score = 218 bits (532), Expect = 3e-55
Identities = 138/411 (33%), Positives = 228/411 (55%), Gaps = 18/411 (4%)
Query: 42 AADTSLLMKIIRQGLVESKLDIEIQRKDPNSPLYSVKTFEALHLKPNLLKGVYAMGFNAP 101
A+ ++LL +QGL D+ Q +D + S FE L+ LL G+Y GF P
Sbjct: 2 ASSSTLLNDDWKQGLAAPPKDLRPQTEDVTATQGS--RFEDFGLRRELLMGIYTAGFERP 59
Query: 102 SKIQETALPTLLADPPQNMIAQSQSGTGKTAAFVLAMLSRVDSNKNYPQVLCLSPTYELA 161
S IQE A+P L ++++A++++GTGKTA+F++ L+R++++ ++ Q L L PT ELA
Sbjct: 60 SPIQEQAIPMALTG--RDILARAKNGTGKTASFIIPTLNRINTSLSHIQALILVPTRELA 117
Query: 162 IQTGEVAAKMAKFCPEIKLKYAVRGEELPRGSKITD---HILIGTPGKMFDWGVKFGMFD 218
+QT +V + P +++ G L HIL+GTPG++ D G K G+
Sbjct: 118 LQTSQVCKTLGAHIPNLQVMITTGGTTLRDDILRLQQPVHILVGTPGRILDLGSK-GIAS 176
Query: 219 MGKIKVFVLDEADVMINRQGHQDQCIRIHKCLPSTCQMMFFSATYGTAVMQFAEIIVSNP 278
+ K VFV+DEAD +++ + C P Q+M FSAT+ V +F + + P
Sbjct: 177 LNKCGVFVMDEADKLLSEDFMPVIEQTLALC-PQERQVMLFSATFPWTVKEFKDQHMVQP 235
Query: 279 IIIRLLREEESLDNIKQYYVKCKSAEDKYRAICNIYGVITIGQAIIFCHTRKTASWLSEK 338
I L+ +E +L + QYY + ++ K + ++ + I Q+IIFC++ L++K
Sbjct: 236 YEINLM-DELTLKGVTQYYAYVEESQ-KVHCLNTLFSKLQINQSIIFCNSTNRVELLAKK 293
Query: 339 MSKDGHSVAVLSGELTVEQRIAVLDRFRVGLEKVLITTNVLSRGIDVEQVTLVVNFDMPM 398
+++ G+S ++ R V FR G+ + L+ +++L+RGID++ V +V+NFD P
Sbjct: 294 VTELGYSCFYSHAKMQQAHRNRVFHDFRNGMTRNLVCSDLLTRGIDIQAVNVVINFDFP- 352
Query: 399 DMNRKADCETYLHRIGRTGRFGKAGIAINLIDSPQAMEICTDIEAHFGKKI 449
R A E+YLHRIGR+GRFG G+AI+L+ + IE+ G +I
Sbjct: 353 ---RTA--ESYLHRIGRSGRFGHLGLAISLLTLEDRHNLYR-IESELGTEI 397
>UniRef50_Q3LWE1 Cluster: Translation initiation factor 4A2; n=1;
Bigelowiella natans|Rep: Translation initiation factor
4A2 - Bigelowiella natans (Pedinomonas minutissima)
(Chlorarachnion sp.(strain CCMP 621))
Length = 378
Score = 217 bits (531), Expect = 4e-55
Identities = 132/379 (34%), Positives = 216/379 (56%), Gaps = 15/379 (3%)
Query: 77 VKTFEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMIAQSQSGTGKTAAFVL 136
VK+F L LK ++ KGV+ SKIQ L LL +++I QS SGTGKT +++
Sbjct: 9 VKSFFDLKLKNSIKKGVFINAMYYCSKIQSITLIPLLKG--RDIIYQSPSGTGKTTCYII 66
Query: 137 AMLSRVDSNKNYPQVLCLSPTYELAIQTGEVAAKMAKFCPE-IKLKYAVR--GEELPRGS 193
+++ + N PQ L L PT EL+IQ V + + I + R GE+L +
Sbjct: 67 GTSNQLCQSINSPQCLILVPTRELSIQIRNVFNVLNIYTKNSITSCHGGRWLGEDL-KNL 125
Query: 194 KITDHILIGTPGKMFDWGVKFGMFDMGKIKVFVLDEADVMINRQGHQDQCIRIHKCLPST 253
K H ++GTPG++ ++ G + KI+ FVLDEAD+++N+ D I++ L S
Sbjct: 126 KKNFHGIVGTPGRVLHL-LQIGSLAITKIRTFVLDEADILMNKNFKID-IFNIYRYLNSK 183
Query: 254 CQMMFFSATYGTAVMQFAEIIVSNPIIIRLLREEESLDNIKQYYVKCKSAEDKYRAICNI 313
Q++ SAT +Q A + +P++I + +EE ++D IKQ+Y+ E+K A+ +I
Sbjct: 184 VQIIICSATIPLYTLQAASKFLLDPVMILMRKEEINIDKIKQFYISVFIEENKLLALLDI 243
Query: 314 YGVITIGQAIIFCHTRKTASWLSEKMSKDGHSVAVLSGELTVEQRIAVLDRFRVGLEKVL 373
+ + +GQ +IFC+T + A+W+ K+ + +V ++ G + ++R + FR G + L
Sbjct: 244 FETLLVGQVLIFCNTIRKANWIHNKLLANNFNVGLIHGRVIQKERTNIFKNFRDGKTRAL 303
Query: 374 ITTNVLSRGIDVEQVTLVVNFDMPMDMNRKADCETYLHRIGRTGRFGKAGIAINLIDSPQ 433
+TT+V SRG+++ +V+LV+N+D+P + YLHRIGRTGRFG+ G+AIN
Sbjct: 304 VTTDVSSRGLNIPEVSLVINYDIPTFK------DVYLHRIGRTGRFGRQGVAINFAKLRD 357
Query: 434 AMEICTDIEAHFGKKIQLL 452
I ++E HF I+ L
Sbjct: 358 LHNI-KNLEVHFSITIEEL 375
>UniRef50_P39517 Cluster: ATP-dependent RNA helicase DHH1; n=103;
Eukaryota|Rep: ATP-dependent RNA helicase DHH1 -
Saccharomyces cerevisiae (Baker's yeast)
Length = 506
Score = 217 bits (530), Expect = 5e-55
Identities = 131/355 (36%), Positives = 198/355 (55%), Gaps = 16/355 (4%)
Query: 79 TFEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMIAQSQSGTGKTAAFVLAM 138
TFE +LK LL G++ GF PS IQE A+P + ++++A++++GTGKTAAFV+
Sbjct: 47 TFEDFYLKRELLMGIFEAGFEKPSPIQEEAIPVAITG--RDILARAKNGTGKTAAFVIPT 104
Query: 139 LSRVDSNKNYPQVLCLSPTYELAIQTGEVAAKMAKFCPEIKLKYAVRGEELPRGS---KI 195
L +V N Q L + PT ELA+QT +V + K C I G L
Sbjct: 105 LEKVKPKLNKIQALIMVPTRELALQTSQVVRTLGKHCG-ISCMVTTGGTNLRDDILRLNE 163
Query: 196 TDHILIGTPGKMFDWGVKFGMFDMGKIKVFVLDEADVMINRQGHQDQCIRIHKCLPSTCQ 255
T HIL+GTPG++ D + + D+ +F++DEAD M++R + +I LP T Q
Sbjct: 164 TVHILVGTPGRVLDLASR-KVADLSDCSLFIMDEADKMLSRD-FKTIIEQILSFLPPTHQ 221
Query: 256 MMFFSATYGTAVMQFAEIIVSNPIIIRLLREEESLDNIKQYYVKCKSAEDKYRAICNIYG 315
+ FSAT+ V +F + P I L+ EE +L I QYY + + K + ++
Sbjct: 222 SLLFSATFPLTVKEFMVKHLHKPYEINLM-EELTLKGITQYYAFVEERQ-KLHCLNTLFS 279
Query: 316 VITIGQAIIFCHTRKTASWLSEKMSKDGHSVAVLSGELTVEQRIAVLDRFRVGLEKVLIT 375
+ I QAIIFC++ L++K++ G+S + ++R V FR G + L+
Sbjct: 280 KLQINQAIIFCNSTNRVELLAKKITDLGYSCYYSHARMKQQERNKVFHEFRQGKVRTLVC 339
Query: 376 TNVLSRGIDVEQVTLVVNFDMPMDMNRKADCETYLHRIGRTGRFGKAGIAINLID 430
+++L+RGID++ V +V+NFD P ETYLHRIGR+GRFG G+AINLI+
Sbjct: 340 SDLLTRGIDIQAVNVVINFDFP------KTAETYLHRIGRSGRFGHLGLAINLIN 388
>UniRef50_A2SQE1 Cluster: DEAD/DEAH box helicase domain protein;
n=6; cellular organisms|Rep: DEAD/DEAH box helicase
domain protein - Methanocorpusculum labreanum (strain
ATCC 43576 / DSM 4855 / Z)
Length = 656
Score = 217 bits (529), Expect = 7e-55
Identities = 128/377 (33%), Positives = 211/377 (55%), Gaps = 17/377 (4%)
Query: 78 KTFEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMIAQSQSGTGKTAAFVLA 137
KTF + LL+ + MGF P+ IQ A+P +L +++ Q+Q+GTGKTAAF +
Sbjct: 5 KTFAEFAISEELLQAIGDMGFEEPTPIQAMAIPQILDG--KDVTGQAQTGTGKTAAFGIP 62
Query: 138 MLSRVDSNKNYPQVLCLSPTYELAIQTGEVAAKMAKFCPEIKLKYAVRGEELPR---GSK 194
++ R+D + Q L LSPT ELAIQT E +++ K+ + + G+ + R K
Sbjct: 63 IIERLDPDNKNVQALVLSPTRELAIQTAEEFSRLMKYKKGLNVVPIYGGQPIERQLRALK 122
Query: 195 ITDHILIGTPGKMFDWGVKFGMFDMGKIKVFVLDEADVMINRQGHQDQCIRIHKCLPSTC 254
T ++IGTPG++ D +K G + + +F+LDEAD M++ G ++ I + P
Sbjct: 123 GTVQVVIGTPGRVIDH-IKRGTLHLDSVTMFILDEADQMLD-MGFREDIEDIFRDTPKDR 180
Query: 255 QMMFFSATYGTAVMQFAEIIVSNPIIIRLLREEESLDNIKQYYVKCKSAEDKYRAICNIY 314
Q + FSAT ++ +P +++ R+E ++ I+Q Y++ + DK A+C
Sbjct: 181 QTILFSATMPQPILDITRRFQRDPQFVKITRKELTVPQIEQTYIEVRE-RDKLEALCRTL 239
Query: 315 GVITIGQAIIFCHTRKTASWLSEKMSKDGHSVAVLSGELTVEQRIAVLDRFRVGLEKVLI 374
+ A++FC+T++T L +M G+ V L G++ +QR V+ RFR G VLI
Sbjct: 240 DMNNPELALVFCNTKRTVDDLMSRMQARGYFVEALHGDMKQQQRDRVMARFRSGSIDVLI 299
Query: 375 TTNVLSRGIDVEQVTLVVNFDMPMDMNRKADCETYLHRIGRTGRFGKAGIAINLIDSPQA 434
T+V +RGIDV+ V +V N+D+P D+ E Y+HRIGRT R G+ G ++ + +P+
Sbjct: 300 ATDVAARGIDVDDVDIVFNYDVPQDV------EYYVHRIGRTARAGRTGKSVTFV-APRE 352
Query: 435 MEICTDIEAHFGKKIQL 451
+ DI+ + KIQ+
Sbjct: 353 IYKLRDIQRY--AKIQI 367
>UniRef50_Q2NEZ7 Cluster: Predicted helicase; n=6; cellular
organisms|Rep: Predicted helicase - Methanosphaera
stadtmanae (strain DSM 3091)
Length = 583
Score = 214 bits (522), Expect = 5e-54
Identities = 131/389 (33%), Positives = 212/389 (54%), Gaps = 18/389 (4%)
Query: 80 FEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMIAQSQSGTGKTAAFVLAML 139
F+ L++ P + K V MGF S IQ A+P +LA +++ Q+Q+GTGKTAAF + +L
Sbjct: 6 FKDLNISPEIQKAVADMGFEEASPIQSLAIPQILAH--KDVTGQAQTGTGKTAAFGIPLL 63
Query: 140 SRVDSNKNYPQVLCLSPTYELAIQTGEVAAKMAKFCPEIKLKYAVRGEELPRGSKITD-- 197
+DS N Q + L PT ELAIQ E K++ + P+I + G+ + R K
Sbjct: 64 ENIDSEDNNLQAIILCPTRELAIQVAEELRKLSVYLPKIDVLPVYGGQPIDRQIKALQKG 123
Query: 198 -HILIGTPGKMFDWGVKFGMFDMGKIKVFVLDEADVMINRQGHQDQCIRIHKCLPSTCQM 256
I+IGTPG++ D + G + IK +LDEAD M++ G ++ I + +P Q
Sbjct: 124 VQIIIGTPGRVMDH-IDRGTLSLNNIKTVILDEADEMLD-MGFREDIEYILEDIPYERQF 181
Query: 257 MFFSATYGTAVMQFAEIIVSNPIIIRLLREEESLDNIKQYYVKCKSAEDKYRAICNIYGV 316
+ FSAT ++Q A+ +NP I+++ + E + +++Q Y + K + K + + +
Sbjct: 182 LLFSATLPQEILQLAQRYQTNPEIVKVTKHELTTPDVEQKYFEVKE-DMKLELLSRLLDL 240
Query: 317 ITIGQAIIFCHTRKTASWLSEKMSKDGHSVAVLSGELTVEQRIAVLDRFRVGLEKVLITT 376
+++FC+T++ L + G+ L G+LT QR V+ +F+ G ++L+ T
Sbjct: 241 HDFDLSLVFCNTKRKVDKLVSHLQIRGYLADGLHGDLTQNQRDRVMSKFKKGNIEILVAT 300
Query: 377 NVLSRGIDVEQVTLVVNFDMPMDMNRKADCETYLHRIGRTGRFGKAGIAINLIDSPQAME 436
+V +RGIDV V V NFD+P D E Y+HRIGRTGR GK G A + + + +
Sbjct: 301 DVAARGIDVGGVEAVFNFDIPNDN------EYYVHRIGRTGRAGKTGKAYSFVSGREIYQ 354
Query: 437 ICTDIEAHFGKKIQLLDI---EDAEEIEK 462
+ DI+ + KI+ I D EE++K
Sbjct: 355 L-RDIQRYAKTKIEQAPIPALSDVEEVKK 382
>UniRef50_Q725W5 Cluster: ATP-dependent RNA helicase, DEAD/DEAH
family; n=2; Desulfovibrio vulgaris subsp. vulgaris|Rep:
ATP-dependent RNA helicase, DEAD/DEAH family -
Desulfovibrio vulgaris (strain Hildenborough / ATCC
29579 / NCIMB8303)
Length = 532
Score = 213 bits (519), Expect = 1e-53
Identities = 129/377 (34%), Positives = 208/377 (55%), Gaps = 15/377 (3%)
Query: 76 SVKTFEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMIAQSQSGTGKTAAFV 135
SV++F+ L L+ LLK + +GF PS IQ A+P LL +++I Q+Q+GTGKTAAF
Sbjct: 3 SVESFKDLPLEEELLKAIEELGFTEPSPIQSIAIPRLLEG--RDVIGQAQTGTGKTAAFG 60
Query: 136 LAMLSRVDSNKNYPQVLCLSPTYELAIQTGEVAAKMAKFCPEIKLKYAVRGEEL-PRGSK 194
L +L R+D+ Q L L PT ELA+Q +AK +++ G+ + P+ S
Sbjct: 61 LPLLQRIDAADRSVQALVLCPTRELALQVANGLTALAKHLRGVRILSVYGGQPIEPQASA 120
Query: 195 ITD--HILIGTPGKMFDWGVKFGMFDMGKIKVFVLDEADVMINRQGHQDQCIRIHKCLPS 252
+ +++GTPG++ D + G +G +++ VLDEAD M++ G ++ RI +P
Sbjct: 121 LRRGAQVVVGTPGRILDH-INRGTLQLGVVRMTVLDEADEMLD-MGFREDIERILSEMPE 178
Query: 253 TCQMMFFSATYGTAVMQFAEIIVSNPIIIRLLREEESLDNIKQYYVKCKSAEDKYRAICN 312
Q FFSAT +++ A + P ++R+ R + ++ N +Q + + + + A+C
Sbjct: 179 WVQSAFFSATMPDGILELARRFLREPELLRVTRRQLTVANTEQAWFEVRPFR-RVDAVCR 237
Query: 313 IYGVITIGQAIIFCHTRKTASWLSEKMSKDGHSVAVLSGELTVEQRIAVLDRFRVGLEKV 372
I+ +AI+F T++ L+ + + G L G+L QR V+ RFR G V
Sbjct: 238 IFDAYIPRKAIVFRATKQGVDELAAALQQRGILADALHGDLNQTQRERVMSRFRAGGISV 297
Query: 373 LITTNVLSRGIDVEQVTLVVNFDMPMDMNRKADCETYLHRIGRTGRFGKAGIAINLIDSP 432
L+ T+V +RG+DV+ V V+NFD+P D ETY+HRIGRTGR G+ G A +
Sbjct: 298 LVATDVAARGLDVDDVDTVINFDLPNDP------ETYVHRIGRTGRAGRTGRAFSFAAGR 351
Query: 433 QAMEICTDIEAHFGKKI 449
++ DI+ G +I
Sbjct: 352 DVYKL-RDIQRVTGSRI 367
>UniRef50_Q81VG0 Cluster: DEAD-box ATP-dependent RNA helicase ydbR;
n=16; cellular organisms|Rep: DEAD-box ATP-dependent RNA
helicase ydbR - Bacillus anthracis
Length = 528
Score = 212 bits (517), Expect = 2e-53
Identities = 132/384 (34%), Positives = 219/384 (57%), Gaps = 16/384 (4%)
Query: 79 TFEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMIAQSQSGTGKTAAFVLAM 138
TF L L +LL+ V +MGF + IQ +P L +++I Q+Q+GTGKTAAF L +
Sbjct: 3 TFRELGLSDSLLQSVESMGFEEATPIQAETIPHALQG--KDIIGQAQTGTGKTAAFGLPL 60
Query: 139 LSRVDSNKNYPQVLCLSPTYELAIQTGEVAAKMAKFCPEIKLKYAVRGEELPR---GSKI 195
L +VD++K Q + ++PT ELAIQ GE K+ K +++ G+++ R K
Sbjct: 61 LDKVDTHKESVQGIVIAPTRELAIQVGEELYKIGKH-KRVRILPIYGGQDINRQIRALKK 119
Query: 196 TDHILIGTPGKMFDWGVKFGMFDMGKIKVFVLDEADVMINRQGHQDQCIRIHKCLPSTCQ 255
HI++GTPG++ D + + ++ VLDEAD M+N G + I +P T Q
Sbjct: 120 HPHIIVGTPGRILDH-INRKTLRLQNVETVVLDEADEMLN-MGFIEDIEAILTDVPETHQ 177
Query: 256 MMFFSATYGTAVMQFAEIIVSNPIIIRLLREEESLDNIKQYYVKCKSAEDKYRAICNIYG 315
+ FSAT + + AE ++ P I++ +E ++ NI+Q+Y++ + + K+ + +
Sbjct: 178 TLLFSATMPDPIRRIAERFMTEPQHIKVKAKEVTMPNIQQFYLEVQEKK-KFDVLTRLLD 236
Query: 316 VITIGQAIIFCHTRKTASWLSEKMSKDGHSVAVLSGELTVEQRIAVLDRFRVGLEKVLIT 375
+ + AI+F T++ LSE ++ G++ + G+LT +R++VL +F+ G +VL+
Sbjct: 237 IQSPELAIVFGRTKRRVDELSEALNLRGYAAEGIHGDLTQAKRMSVLRKFKEGSIEVLVA 296
Query: 376 TNVLSRGIDVEQVTLVVNFDMPMDMNRKADCETYLHRIGRTGRFGKAGIAINLIDSPQAM 435
T+V +RG+D+ VT V NFD+P D E+Y+HRIGRTGR GK GIA+ L +P+
Sbjct: 297 TDVAARGLDISGVTHVYNFDIPQDP------ESYVHRIGRTGRAGKKGIAM-LFVTPRES 349
Query: 436 EICTDIEAHFGKKIQLLDIEDAEE 459
+IE +K+ +D +E
Sbjct: 350 GQLKNIERTTKRKMDRMDAPTLDE 373
>UniRef50_A2EPG4 Cluster: DEAD/DEAH box helicase family protein;
n=1; Trichomonas vaginalis G3|Rep: DEAD/DEAH box
helicase family protein - Trichomonas vaginalis G3
Length = 389
Score = 211 bits (515), Expect = 3e-53
Identities = 132/382 (34%), Positives = 206/382 (53%), Gaps = 20/382 (5%)
Query: 71 NSPLYSVKTFEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMIAQSQSGTGK 130
N PL T+E++ LKP L++ + G+ PS IQ+ A+ + +N++ QSQ+G+GK
Sbjct: 13 NVPLEVYPTWESMKLKPELIEAIKKNGWEKPSPIQQRAI--YIISQGKNIMFQSQNGSGK 70
Query: 131 TAAFVLAMLSRVDSNKNYPQVLCLSPTYELAIQTGEVAAKMAKFCPEIKLKYAVRGEELP 190
TA F + L+R+ +++ +SPT ELAIQT + + V G L
Sbjct: 71 TATFSIGTLARLRLTSKTTELIIVSPTRELAIQTENTLKSLGA-----NTRACVGGNSLG 125
Query: 191 RGSKITD---HILIGTPGKMFDWGVKFGMFDMGKIKVFVLDEADVMINRQGHQDQCIRIH 247
K H + GTPG++ +K K++ VLDEAD M+ + + I
Sbjct: 126 ADVKALQKGIHCVSGTPGRILQL-LKEHNIQAEKVQSVVLDEADEMLT--SFKSTIMDIL 182
Query: 248 KCLPSTCQMMFFSATYGTAVMQFAEIIVSNPIIIRLLREEESLDNIKQYYVKCKSAEDKY 307
+ LP Q + +AT V++ A + N + IR+ R+E +L I QY V+ ++ E K+
Sbjct: 183 QKLPHA-QKVIVTATVSADVVELATAHLRNSVEIRVPRDELTLTGIDQYVVRVENEEWKF 241
Query: 308 RAICNIYGVITIGQAIIFCHTRKTASWLSEKMSKDGHSVAVLSGELTVEQRIAVLDRFRV 367
+ +IY I I +A+IF ++ + +WL KM G +VA++ G++T++ R + + FR
Sbjct: 242 DTLIDIYQSIAIEKAVIFVNSVEKGNWLKGKMVDSGFTVALVHGQMTMDDRAKITEEFRS 301
Query: 368 GLEKVLITTNVLSRGIDVEQVTLVVNFDMPMDMNRKADCETYLHRIGRTGRFGKAGIAIN 427
G +VLI T+V SRGIDV VTLV+NFD + C+ YLHRIGR+GRFG+ G+AI
Sbjct: 302 GEARVLIATDVFSRGIDVRNVTLVINFDFAL------TCDVYLHRIGRSGRFGRKGLAIT 355
Query: 428 LIDSPQAMEICTDIEAHFGKKI 449
L +E +F KI
Sbjct: 356 LCAGESDEMKLRKLEKYFSTKI 377
>UniRef50_Q11UP8 Cluster: ATP-dependent RNA helicase; n=1; Cytophaga
hutchinsonii ATCC 33406|Rep: ATP-dependent RNA helicase
- Cytophaga hutchinsonii (strain ATCC 33406 / NCIMB
9469)
Length = 580
Score = 210 bits (512), Expect = 8e-53
Identities = 122/384 (31%), Positives = 213/384 (55%), Gaps = 15/384 (3%)
Query: 80 FEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMIAQSQSGTGKTAAFVLAML 139
F+ L L P +++ + ++G++ + IQE +P L+ +++ Q+Q+GTGKTAAF + +
Sbjct: 3 FKDLGLSPEVVEAIESIGYSEATPIQEKTIPILMTG--KDLTGQAQTGTGKTAAFGIPAI 60
Query: 140 SRVDSNKNYPQVLCLSPTYELAIQTGEVAAKMAKFCPEIKLKYAVRGEELPR---GSKIT 196
VD + N Q L L PT ELA+Q K++KF +++ GE + R K
Sbjct: 61 EHVDISINQTQSLILCPTRELALQVCTELKKLSKFKKGLRVLAVYGGESIERQIRDLKAG 120
Query: 197 DHILIGTPGKMFDWGVKFGMFDMGKIKVFVLDEADVMINRQGHQDQCIRIHKCLPSTCQM 256
HI++GTPG++ D + + + +LDEAD M+N G ++ I LP Q
Sbjct: 121 AHIVVGTPGRIIDH-LDRRTLNASHLSQIILDEADEMLN-MGFREDIELILTRLPEERQT 178
Query: 257 MFFSATYGTAVMQFAEIIVSNPIIIRLLREEESLDNIKQYYVKCKSAEDKYRAICNIYGV 316
+ FSAT ++ A+ +NP II++ R+E ++ ++Q+Y K+++ K + I +
Sbjct: 179 VLFSATLAPPILALAKRFQNNPEIIKIERKELTISTVEQFYYLVKNSQ-KTEIVTQIIDL 237
Query: 317 ITIGQAIIFCHTRKTASWLSEKMSKDGHSVAVLSGELTVEQRIAVLDRFRVGLEKVLITT 376
+ +IFC+T++ +++++ GH+ L G+ T R V+ +FR GL +L+ T
Sbjct: 238 NNLQLMLIFCNTKRKVEEVTDELKAYGHNPISLHGDKTQRDRTEVMSKFRKGLANILVAT 297
Query: 377 NVLSRGIDVEQVTLVVNFDMPMDMNRKADCETYLHRIGRTGRFGKAGIAINLIDSPQAME 436
+V +RGIDV V V+N+D+P+D+ E Y+HRIGRTGR G+ G + L+ S + +
Sbjct: 298 DVAARGIDVTGVDAVINYDVPLDI------ENYVHRIGRTGRAGQLGKSFTLVTSDEKYK 351
Query: 437 ICTDIEAHFGKKIQLLDIEDAEEI 460
+ DIE + I+ + +E+
Sbjct: 352 L-RDIERYTKATIEKAETPTRQEL 374
>UniRef50_A6T3R2 Cluster: ATP-dependent RNA helicase; n=52; cellular
organisms|Rep: ATP-dependent RNA helicase -
Janthinobacterium sp. (strain Marseille) (Minibacterium
massiliensis)
Length = 778
Score = 209 bits (511), Expect = 1e-52
Identities = 131/393 (33%), Positives = 213/393 (54%), Gaps = 19/393 (4%)
Query: 76 SVKTFEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMIAQSQSGTGKTAAFV 135
S F L L LL+ + +G+ +PS IQ +P LL + ++++ Q+Q+GTGKTA+F
Sbjct: 5 SFPLFADLKLSEPLLRVLQELGYESPSPIQAATIPLLLNN--RDVLGQAQTGTGKTASFA 62
Query: 136 LAMLSRVDSNKNYPQVLCLSPTYELAIQTGEVAAKMAKFCPEIKLKYAVRGEELPRGSKI 195
L +L+R+D + PQ L L+PT ELAIQ E + A + P + G+ G+++
Sbjct: 63 LPILARIDIKQTTPQALVLAPTRELAIQVAEAFQRYATYIPGFHVLPIYGGQSY--GAQL 120
Query: 196 TD-----HILIGTPGKMFDWGVKFGMFDMGKIKVFVLDEADVMINRQGHQDQCIRIHKCL 250
+ H+++GTPG++ D K G D+ +IK VLDEAD M+ R G D I +
Sbjct: 121 SALRRGVHVVVGTPGRVIDHLEK-GSLDLSRIKTMVLDEADEML-RMGFIDDVETILQKT 178
Query: 251 PSTCQMMFFSATYGTAVMQFAEIIVSNPIIIRLLREEESLDNIKQYYVKCKSAEDKYRAI 310
P + Q FSAT +A+ + A + +P +I + + + DNI+Q Y S K A+
Sbjct: 179 PESRQTALFSATMPSAIKRIATTYLRDPDLITVAAKTGTADNIRQRYWLV-SGMQKLDAL 237
Query: 311 CNIYGVITIGQAIIFCHTRKTASWLSEKMSKDGHSVAVLSGELTVEQRIAVLDRFRVGLE 370
I IIF T+ L+ K+ G S A ++G++ +QR + + + G
Sbjct: 238 TRILEAENFDGMIIFARTKLGTEELASKLQARGFSAAAINGDIQQQQRERTIQQLKDGKI 297
Query: 371 KVLITTNVLSRGIDVEQVTLVVNFDMPMDMNRKADCETYLHRIGRTGRFGKAGIAINLID 430
+L+ T+V +RG+DVE+++ V+N+D+P D E+Y HRIGRTGR G++G AI L
Sbjct: 298 DILVATDVAARGLDVERISHVINYDVPHDP------ESYTHRIGRTGRAGRSGEAI-LFI 350
Query: 431 SPQAMEICTDIEAHFGKKIQLLDIEDAEEIEKI 463
+P+ + IE + I +L++ E + +
Sbjct: 351 APRERNLLKAIERATRQPISVLELPSVEAVNDV 383
>UniRef50_A4BET4 Cluster: DEAD/DEAH box helicase-like protein; n=1;
Reinekea sp. MED297|Rep: DEAD/DEAH box helicase-like
protein - Reinekea sp. MED297
Length = 579
Score = 208 bits (507), Expect = 3e-52
Identities = 137/389 (35%), Positives = 203/389 (52%), Gaps = 18/389 (4%)
Query: 79 TFEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMIAQSQSGTGKTAAFVLAM 138
TF L L P LLK + ++G+ P+ IQ A+ LL +++ +Q+GTGKTAAF L +
Sbjct: 6 TFADLGLAPVLLKTLDSLGYETPTPIQSQAIVQLLDG--NDVLGLAQTGTGKTAAFSLPL 63
Query: 139 LSRVDSNKNYPQVLCLSPTYELAIQTGEVAAKMAKFCPEIKLKYAVRGEELP---RGSKI 195
LSR+D+ KN PQ L L PT ELAIQ E A+ + G ++ R K
Sbjct: 64 LSRIDTTKNKPQALVLCPTRELAIQVAEAFQTYARGVDNFHVLPIYGGADMRNQLRALKQ 123
Query: 196 TDHILIGTPGKMFDWGVKFGMFDMGKIKVFVLDEADVMINRQGHQDQCIRIHKCLPSTCQ 255
+++GTPG++ D ++ G D+ +K VLDEAD M+ R G + I + P Q
Sbjct: 124 NPQVIVGTPGRVMDH-LRRGTLDLSDLKHLVLDEADEML-RMGFIEDIDWILEHTPKDKQ 181
Query: 256 MMFFSATYGTAVMQFAEIIVSNPIIIRLLREEESLDNIKQYYVKCKSAEDKYRAICNIYG 315
FSAT + + + +P+ I + L I+Q + + DK + I
Sbjct: 182 TALFSATMPHQIKRITDQYQKDPVKIEIKASHSELQQIEQLVWRARGL-DKLDGLTRILE 240
Query: 316 VITIGQAIIFCHTRKTASWLSEKMSKDGHSVAVLSGELTVEQRIAVLDRFRVGLEKVLIT 375
+ IIF TR +LSEK++ G++ LSGE+ +QR +L + G ++I
Sbjct: 241 IEDWNAIIIFVRTRVECQFLSEKLAARGYAATALSGEVAQKQREDILSAMKKGKLDIIIA 300
Query: 376 TNVLSRGIDVEQVTLVVNFDMPMDMNRKADCETYLHRIGRTGRFGKAGIAINLIDSPQAM 435
T+V +RGID+E++T V+N+D+P D TY HRIGRTGR G++G AI L P+
Sbjct: 301 TDVAARGIDIERITHVINWDIP------GDVSTYTHRIGRTGRAGRSGKAI-LFCKPREQ 353
Query: 436 EICTDIEAHFGKKIQLLDIEDAEEIEKIG 464
I DIE K +L+D EK+G
Sbjct: 354 RIIRDIER--ATKSELIDY-PMPSAEKLG 379
>UniRef50_A5CVQ6 Cluster: ATP-dependent RNA helicase DeaD; n=2;
sulfur-oxidizing symbionts|Rep: ATP-dependent RNA
helicase DeaD - Vesicomyosocius okutanii subsp.
Calyptogena okutanii (strain HA)
Length = 608
Score = 206 bits (503), Expect = 1e-51
Identities = 131/388 (33%), Positives = 209/388 (53%), Gaps = 14/388 (3%)
Query: 76 SVKTFEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMIAQSQSGTGKTAAFV 135
S FE L L +L + ++G+ PS IQE + LL + +++I Q+Q+GTGKTAAFV
Sbjct: 10 SPSKFERLGLSNTILNVLDSIGYETPSPIQEQCITHLLNN--KDIIGQAQTGTGKTAAFV 67
Query: 136 LAMLSRVDSNKNYPQVLCLSPTYELAIQTGEVAAKMAKFCPEIKLKYAVRGEELP---RG 192
L +L +++ N N PQ+L L+PT ELAIQ E A+ + G+ R
Sbjct: 68 LPLLDKINLNINAPQLLILAPTRELAIQVSEAVQTYARGMKGFHVLPIYGGQSYDIQLRP 127
Query: 193 SKITDHILIGTPGKMFDWGVKFGMFDMGKIKVFVLDEADVMINRQGHQDQCIRIHKCLPS 252
K H ++GTPG++ D ++ + +K FVLDEAD M+ + G D I + +P
Sbjct: 128 LKRGVHAIVGTPGRVMDH-IEKKTLKLDNLKSFVLDEADEML-KMGFIDDIKWIMQRIPE 185
Query: 253 TCQMMFFSATYGTAVMQFAEIIVSNPIIIRLLREEESLDNIKQYYVKCKSAEDKYRAICN 312
Q+ FSAT + + A+ ++ P II++ + E+ I Q Y +K A+
Sbjct: 186 QRQIALFSATMPNVIKKIAKQFLNQPKIIKIKTKTETATTITQKYCMVGGLSNKLEALTR 245
Query: 313 IYGVITIGQAIIFCHTRKTASWLSEKMSKDGHSVAVLSGELTVEQRIAVLDRFRVGLEKV 372
I V IIF T+ + L+EK+S G S ++G++ QR +++ ++ G +
Sbjct: 246 ILEVTVFDAMIIFVRTKTLTTELTEKLSARGFSADAINGDIQQNQRERIINDYKQGKIDI 305
Query: 373 LITTNVLSRGIDVEQVTLVVNFDMPMDMNRKADCETYLHRIGRTGRFGKAGIAINLIDSP 432
LI T++ +RG+DVE+++ VVN+D+P D E+Y+HRIGRTGR G+ G AI L S
Sbjct: 306 LIATDIAARGLDVERISHVVNYDIPQ------DAESYVHRIGRTGRAGRKGEAI-LFVSN 358
Query: 433 QAMEICTDIEAHFGKKIQLLDIEDAEEI 460
+ + IE +KI +++ + I
Sbjct: 359 RERRMLNTIEHVTRQKITPIELPSVKII 386
>UniRef50_Q8A2K2 Cluster: ATP-dependent RNA helicase; n=10; cellular
organisms|Rep: ATP-dependent RNA helicase - Bacteroides
thetaiotaomicron
Length = 647
Score = 206 bits (502), Expect = 1e-51
Identities = 126/375 (33%), Positives = 202/375 (53%), Gaps = 14/375 (3%)
Query: 77 VKTFEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMIAQSQSGTGKTAAFVL 136
+KTFE L + P + K + MG+ P +QE +P LL + +++A +Q+GTGKTAAF L
Sbjct: 1 MKTFEELGVSPEIRKAIEEMGYENPMPVQEEVIPYLLGEN-NDVVALAQTGTGKTAAFGL 59
Query: 137 AMLSRVDSNKNYPQVLCLSPTYELAIQTGEVAAKMAKFCPEIKLKYAVRGEELP---RGS 193
+L ++D PQ L L PT EL +Q +K+ +K+ G + R
Sbjct: 60 PLLQQIDVKNRVPQSLILCPTRELCLQIAGDLNDYSKYIDGLKVLPVYGGSSIDSQIRSL 119
Query: 194 KITDHILIGTPGKMFDWGVKFGMFDMGKIKVFVLDEADVMINRQGHQDQCIRIHKCLPST 253
K HI++ TPG++ D ++ + + V+DEAD M+N G D I +P
Sbjct: 120 KRGVHIIVATPGRLLDL-MERKTVSLSTVHNIVMDEADEMLN-MGFTDSINAILADVPKE 177
Query: 254 CQMMFFSATYGTAVMQFAEIIVSNPIIIRLLREEESLDNIKQYYVKCKSAEDKYRAICNI 313
+ FSAT + + ++ + N I + R+ ES N+K + A+DKY A+ I
Sbjct: 178 RNTLLFSATMSPEIARISKNYLQNAKEITIGRKNESTSNVK-HVAYTVQAKDKYAALKRI 236
Query: 314 YGVITIGQAIIFCHTRKTASWLSEKMSKDGHSVAVLSGELTVEQRIAVLDRFRVGLEKVL 373
IIFC TRK +++K+ ++G++ L GEL+ QR AV+ +FR+ ++L
Sbjct: 237 VDYYPQIYGIIFCRTRKETQEIADKLMQEGYNADSLHGELSQAQRDAVMQKFRIRNLQLL 296
Query: 374 ITTNVLSRGIDVEQVTLVVNFDMPMDMNRKADCETYLHRIGRTGRFGKAGIAINLIDSPQ 433
+ T+V +RG+DV+ +T V+N+ +P D E+Y HR GRTGR GK G +I +I+ +
Sbjct: 297 VATDVAARGLDVDDLTHVINYGLP------DDTESYTHRSGRTGRAGKTGTSIAIINLRE 350
Query: 434 AMEICTDIEAHFGKK 448
++ +IE GKK
Sbjct: 351 KGKL-REIERIIGKK 364
>UniRef50_Q0AVQ9 Cluster: ATP-dependent RNA helicase; n=1;
Syntrophomonas wolfei subsp. wolfei str. Goettingen|Rep:
ATP-dependent RNA helicase - Syntrophomonas wolfei
subsp. wolfei (strain Goettingen)
Length = 530
Score = 206 bits (502), Expect = 1e-51
Identities = 130/390 (33%), Positives = 214/390 (54%), Gaps = 16/390 (4%)
Query: 76 SVKTFEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMIAQSQSGTGKTAAFV 135
S + F ++ LK +LL+ + GF P+ IQ ++P +A +++ Q+Q+GTGKTA+F
Sbjct: 2 SFENFYSMGLKTDLLQMIDEKGFEKPTPIQVKSIPIAMAG--LDLMGQAQTGTGKTASFG 59
Query: 136 LAMLSRVDSNKNYPQVLCLSPTYELAIQ-TGEVAAKMAKFCPEIKLKYAVRGEELP-RGS 193
+ +L+RV + Q L L PT ELA+Q T E+++ + ++ Y + EL R
Sbjct: 60 IPILNRVIKGEGL-QALVLCPTRELAVQVTEEISSLSRRMRIQVLAIYGGQSIELQLRSL 118
Query: 194 KITDHILIGTPGKMFDWGVKFGMFDMGKIKVFVLDEADVMINRQGHQDQCIRIHKCLPST 253
+ I++GTPG++ D + G + +K VLDEAD M++ G +I P
Sbjct: 119 RRNPEIIVGTPGRLMDH-MNRGTISLSPLKYVVLDEADEMLD-MGFLPDIQKILSQCPRE 176
Query: 254 CQMMFFSATYGTAVMQFAEIIVSNPIIIRLLREEESLDNIKQYYVKCKSAEDKYRAICNI 313
Q FSAT V + + P II + E ++ I+QYY + S K +C I
Sbjct: 177 RQTFLFSATLPDEVRELGTKFMKQPEIILIESPERTVPEIEQYYYQVNSRR-KIETLCRI 235
Query: 314 YGVITIGQAIIFCHTRKTASWLSEKMSKDGHSVAVLSGELTVEQRIAVLDRFRVGLEKVL 373
++IFC T++ A L+ ++ G++ L G+++ +R V+ FR G K+L
Sbjct: 236 IDAQQPPISLIFCRTKRNADELARVLTSRGYNADALHGDMSQRERDHVMHGFRQGNTKIL 295
Query: 374 ITTNVLSRGIDVEQVTLVVNFDMPMDMNRKADCETYLHRIGRTGRFGKAGIAINLIDSPQ 433
+ T++ +RG+D+E VT V NFD+P D+ ++Y+HR+GRTGR G++GIAI L++ P
Sbjct: 296 VATDLAARGLDIELVTHVFNFDIPEDL------DSYIHRVGRTGRAGRSGIAITLVE-PT 348
Query: 434 AMEICTDIEAHFGKKIQLLDIED-AEEIEK 462
+ + IE H GK+I+ + AE +EK
Sbjct: 349 QIRLLRMIERHTGKRIERALLPTLAEAVEK 378
>UniRef50_Q9PGP6 Cluster: ATP-dependent RNA helicase; n=10; cellular
organisms|Rep: ATP-dependent RNA helicase - Xylella
fastidiosa
Length = 614
Score = 204 bits (498), Expect = 4e-51
Identities = 127/393 (32%), Positives = 215/393 (54%), Gaps = 15/393 (3%)
Query: 71 NSPLYSVKTFEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMIAQSQSGTGK 130
++P + F L L +++ V +G+ PS IQ +P LLA ++++ Q+Q+GTGK
Sbjct: 8 SNPSSTPLLFADLGLSDAVMQAVTKIGYETPSPIQAATIPALLAG--RDVLGQAQTGTGK 65
Query: 131 TAAFVLAMLSRVDSNKNYPQVLCLSPTYELAIQTGEVAAKMAKFCPEIKLKYAVRGEELP 190
TAAF L +L+R N+ PQVL L+PT ELAIQ E + A ++ G+
Sbjct: 66 TAAFALPLLTRTVLNQVKPQVLVLAPTRELAIQVAEAFQRYAASISGFRVLPVYGGQSYG 125
Query: 191 R---GSKITDHILIGTPGKMFDWGVKFGMFDMGKIKVFVLDEADVMINRQGHQDQCIRIH 247
+ K H+++GTPG++ D ++ G D+ ++K VLDEAD M+ R G + +
Sbjct: 126 QQLAALKRGVHVIVGTPGRVIDH-LERGTLDLSELKTLVLDEADEML-RMGFIEDVEEVL 183
Query: 248 KCLPSTCQMMFFSATYGTAVMQFAEIIVSNPIIIRLLREEESLDNIKQYYVKCKSAEDKY 307
+ LP++ Q+ FSAT + + A+ + +PI + + + + NI+Q Y S K
Sbjct: 184 RKLPASRQVALFSATMPPQIRRIAQTYLQDPIEVTIATKTTTAANIRQRYWWV-SGLHKL 242
Query: 308 RAICNIYGVITIGQAIIFCHTRKTASWLSEKMSKDGHSVAVLSGELTVEQRIAVLDRFRV 367
A+ I V T IIF T+ L+EK+ G + A ++G++ QR + + +
Sbjct: 243 DALTRILEVETFDAMIIFVRTKAATEELAEKLQARGLTAAAINGDMQQAQRERTIHQLKD 302
Query: 368 GLEKVLITTNVLSRGIDVEQVTLVVNFDMPMDMNRKADCETYLHRIGRTGRFGKAGIAIN 427
G +L+ T+V +RG+DVE+++ V+N+D+P D+ E+Y+HRIGRTGR G++G AI
Sbjct: 303 GKLDILVATDVAARGLDVERISHVLNYDIPYDV------ESYVHRIGRTGRAGRSGEAI- 355
Query: 428 LIDSPQAMEICTDIEAHFGKKIQLLDIEDAEEI 460
L +P+ + IE + I+ + + + +
Sbjct: 356 LFVTPREKGMLRQIERATHQPIEAMQLPSVDAV 388
>UniRef50_Q484Q1 Cluster: RNA helicase DeaD; n=1; Colwellia
psychrerythraea 34H|Rep: RNA helicase DeaD - Colwellia
psychrerythraea (strain 34H / ATCC BAA-681)
(Vibriopsychroerythus)
Length = 611
Score = 204 bits (498), Expect = 4e-51
Identities = 129/392 (32%), Positives = 218/392 (55%), Gaps = 25/392 (6%)
Query: 80 FEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMIAQSQSGTGKTAAFVLAML 139
F +L L NLL V ++GF + + IQ +P LLA ++++ ++Q+GTGKTAAF L L
Sbjct: 17 FASLGLPENLLSAVLSIGFTSATDIQALTIPPLLAG--KDVLGEAQTGTGKTAAFGLPAL 74
Query: 140 SRVDSNKNYPQVLCLSPTYELAIQTGEVAAKMAKFCPEIKL-------KYAVRGEELPRG 192
+++D++ PQ++ L+PT ELA+Q E K +++ Y + ++L RG
Sbjct: 75 AKIDTSIKKPQLMVLAPTRELAMQVAEAIESFGKDMKGLRVATLYGGQSYGPQFQQLERG 134
Query: 193 SKITDHILIGTPGKMFDWGVKFGMFDMGKIKVFVLDEADVMINRQGHQD-QCIRIHKCLP 251
+++ ++GTPG++ D ++ + +++V VLDEAD M+N +D Q I H +P
Sbjct: 135 AQV----VVGTPGRLMDH-LRRKSLKLDELRVCVLDEADEMLNMGFLEDIQWILDH--IP 187
Query: 252 STCQMMFFSATYGTAVMQFAEIIVSNPIIIRLLREEESLDNIKQYYVKCKSAEDKYRAIC 311
T QM FSAT A+ + A + +P I++ +++ NI QY K S K A+
Sbjct: 188 KTAQMCLFSATMPPAIRKIANRFLKDPEHIKVAAVKKAKANITQYAWKV-SGITKMTALE 246
Query: 312 NIYGVITIGQAIIFCHTRKTASWLSEKMSKDGHSVAVLSGELTVEQRIAVLDRFRVGLEK 371
I V+ IIF TR ++EK+ + G+ L+G+L QR +D+ + G
Sbjct: 247 RIAEVVEYDAMIIFVRTRNDTVDIAEKLERAGYPALALNGDLNQAQRERCIDQMKSGKSS 306
Query: 372 VLITTNVLSRGIDVEQVTLVVNFDMPMDMNRKADCETYLHRIGRTGRFGKAGIAINLIDS 431
+L+ T+V++RG+D+ +++LV+N+D+P D E Y+HRIGRTGR G+ G++I +
Sbjct: 307 ILVATDVVARGLDIPRISLVINYDLP------GDNEAYVHRIGRTGRAGREGMSIAFV-R 359
Query: 432 PQAMEICTDIEAHFGKKIQLLDIEDAEEIEKI 463
P+ M E + D+ + ++I KI
Sbjct: 360 PREMYSIRHYERLTNGTVLNYDLPNIQDIGKI 391
>UniRef50_A2TP65 Cluster: ATP-dependent RNA helicase, DEAD/DEAH box
family protein; n=13; Bacteroidetes|Rep: ATP-dependent
RNA helicase, DEAD/DEAH box family protein - Dokdonia
donghaensis MED134
Length = 638
Score = 203 bits (496), Expect = 7e-51
Identities = 127/389 (32%), Positives = 208/389 (53%), Gaps = 16/389 (4%)
Query: 79 TFEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMIAQSQSGTGKTAAFVLAM 138
TF+ L L LL+ + MGF PSKIQE A+P LLA+ ++M+A +Q+GTGKTAAF +
Sbjct: 2 TFDQLGLNAPLLQAIADMGFETPSKIQEEAIPQLLAED-RDMVALAQTGTGKTAAFGFPL 60
Query: 139 LSRVDSNKNYPQVLCLSPTYELAIQTGEVAAKMAKFCPEIKLKYAVRGEELPRGSKITDH 198
L +D++ Q L ++PT EL +Q AK +++ G + ++
Sbjct: 61 LQNIDASSKTTQGLIIAPTRELCLQITNEMKLYAKHIKGVRVVAVYGGSNIQEQAREISR 120
Query: 199 ---ILIGTPGKMFDWGVKFGMFDMGKIKVFVLDEADVMINRQGHQDQCIRIHKCLPSTCQ 255
I++ TPG+M D ++ M D+ K+ VLDEAD M+N G + I P
Sbjct: 121 GAQIVVATPGRMQDM-MRRRMVDITKLSYCVLDEADEMLN-MGFYEDITNILADTPEDKL 178
Query: 256 MMFFSATYGTAVMQFAEIIVSNPIIIRLLREEESLDNIK-QYYVKCKSAEDKYRAICNIY 314
FSAT V + A+ + +P+ I + + E N+ +YYV D+Y+A+ +
Sbjct: 179 TWLFSATMPREVARIAKEFMHDPLEITVGHKNEGAKNVSHEYYVV--HTRDRYQALKRLS 236
Query: 315 GVITIGQAIIFCHTRKTASWLSEKMSKDGHSVAVLSGELTVEQRIAVLDRFRVGLEKVLI 374
++IFC T++ ++E++ +DG++ L G+L+ QR V+ FR ++L+
Sbjct: 237 DANPDIFSVIFCRTKRDTQKVAEQLIEDGYNAGALHGDLSQNQRDLVMKSFRNNQIQMLV 296
Query: 375 TTNVLSRGIDVEQVTLVVNFDMPMDMNRKADCETYLHRIGRTGRFGKAGIAINLIDSPQA 434
T+V +RGIDV+ +T V+N+ +P ++ ETY HR GRTGR GK G ++ ++ +
Sbjct: 297 ATDVAARGIDVDDITHVINYQLPDEI------ETYTHRSGRTGRAGKTGTSMVIVTKSEM 350
Query: 435 MEICTDIEAHFGKKIQLLDIEDAEEIEKI 463
+I +E KK I D +EI ++
Sbjct: 351 RKI-KQLEKILAKKFDQKTIPDGKEITQV 378
>UniRef50_P44586 Cluster: Cold-shock DEAD box protein A homolog;
n=20; Pasteurellaceae|Rep: Cold-shock DEAD box protein A
homolog - Haemophilus influenzae
Length = 613
Score = 203 bits (495), Expect = 9e-51
Identities = 124/375 (33%), Positives = 208/375 (55%), Gaps = 20/375 (5%)
Query: 79 TFEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMIAQSQSGTGKTAAFVLAM 138
TF L L +LK V +GF PS IQ++ +P LL +++ +Q+G+GKTAAF L +
Sbjct: 6 TFNDLGLPEFILKAVSDLGFETPSPIQQSCIPHLLNG--NDVLGMAQTGSGKTAAFALPL 63
Query: 139 LSRVDSNKNYPQVLCLSPTYELAIQTGEVAAKMAKFCPEIKLKYAVRGEELP---RGSKI 195
L+++D ++ +PQ+L ++PT ELAIQ + K+ ++ G+ R K
Sbjct: 64 LAQIDPSEKHPQMLVMAPTRELAIQVADACELFVKYAQGTRIVTLYGGQRYDIQLRALKQ 123
Query: 196 TDHILIGTPGKMFDWGVKFGMFDMGKIKVFVLDEADVMINRQGHQDQCIRIHKCLPSTCQ 255
+++GTPG++ D ++ G ++ +++ VLDEAD M+ R G D + LP Q
Sbjct: 124 GAQVVVGTPGRILDH-IRRGTLNLSELRFIVLDEADEML-RMGFIDDVETVMAELPENHQ 181
Query: 256 MMFFSATYGTAVMQFAEIIVSNPIIIRLLREEESLDNIKQ--YYVKCKSAEDKYRAICNI 313
FSAT + + + +++P +++ E+ +I Q +YV K A+
Sbjct: 182 TALFSATMPEPIRRITKRFMNDPQEVKIKVNNENAPDIDQSCWYVH---GVRKNEALLRF 238
Query: 314 YGVITIGQAIIFCHTRKTASWLSEKMSKDGHSVAVLSGELTVEQRIAVLDRFRVGLEKVL 373
V AIIF T+ ++E + K+G A L+G++T + R LDR R G ++
Sbjct: 239 LEVEDFDAAIIFARTKTGTLDITELLEKNGFRSAALNGDMTQQLREQTLDRLRNGSLDIV 298
Query: 374 ITTNVLSRGIDVEQVTLVVNFDMPMDMNRKADCETYLHRIGRTGRFGKAGIAINLIDSPQ 433
+ T+V +RGID+E+++LVVN+D+P+ D E+Y+HRIGRTGR G++G A+ ++ P+
Sbjct: 299 VATDVAARGIDIERISLVVNYDIPL------DAESYVHRIGRTGRAGRSGRALLFVE-PR 351
Query: 434 AMEICTDIEAHFGKK 448
+ +IE H KK
Sbjct: 352 ERRLLRNIE-HLMKK 365
>UniRef50_Q8XKJ8 Cluster: ATP-dependent RNA helicase; n=12;
Clostridium|Rep: ATP-dependent RNA helicase -
Clostridium perfringens
Length = 528
Score = 202 bits (494), Expect = 1e-50
Identities = 130/387 (33%), Positives = 206/387 (53%), Gaps = 19/387 (4%)
Query: 80 FEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMIAQSQSGTGKTAAFVLAML 139
F+ L LK +LLK + MGF PS+IQ ++P L ++I Q+Q+GTGKTAAF A++
Sbjct: 6 FDDLGLKESLLKAIKDMGFEEPSQIQAESIPVALEG--HDIIGQAQTGTGKTAAFGCAII 63
Query: 140 SRVD--SNKNYPQVLCLSPTYELAIQTGEVAAKMAKFCPEIKLKYAVRGEELPRGSKITD 197
+ D K P+ L L+PT ELAIQ E ++ K ++ + G+ + R +
Sbjct: 64 NNADFSGKKKSPKALILAPTRELAIQVNEELVRLGKH-EKLSVLPIYGGQPIDRQIRALK 122
Query: 198 H---ILIGTPGKMFDWGVKFGMFDMGKIKVFVLDEADVMINRQGHQDQCIRIHKCLPSTC 254
+ I++GTPG++ D ++ + I VLDEAD M+N G D I K L +
Sbjct: 123 NGVDIVVGTPGRVLDL-IRRKSLPLNDIGFLVLDEADEMLN-MGFIDDLEEIVKSLKTDR 180
Query: 255 QMMFFSATYGTAVMQFAEIIVSNPII-IRLLREEESLDNIKQYYVKCKSAEDKYRAICNI 313
Q + FSAT + + A + I + + ++ I+Q+Y + K D++ +C +
Sbjct: 181 QTLLFSATMPPQIKKLARNYMKEDTKHIAIKKSSLTVSKIEQFYFEIKH-RDRFETLCRV 239
Query: 314 YGVITIGQAIIFCHTRKTASWLSEKMSKDGHSVAVLSGELTVEQRIAVLDRFRVGLEKVL 373
AIIFC T+K + EKM G+ V + G+++ R+ L +F+ G L
Sbjct: 240 LDFDEPNAAIIFCKTKKGVDEVVEKMQARGYMVEGMHGDMSQNHRLQTLRKFKEGSLDFL 299
Query: 374 ITTNVLSRGIDVEQVTLVVNFDMPMDMNRKADCETYLHRIGRTGRFGKAGIAINLIDSPQ 433
+ T+V +RGIDVE VT V+N+D+P D E+Y+HRIGRTGR + G+A +L+ +P+
Sbjct: 300 VATDVAARGIDVESVTHVINYDLPQDN------ESYVHRIGRTGRANREGVAYSLV-TPK 352
Query: 434 AMEICTDIEAHFGKKIQLLDIEDAEEI 460
+ I+ H KI + +EI
Sbjct: 353 EYMMLKQIQKHTKSKIIRKAVPTVDEI 379
>UniRef50_Q9SEV5 Cluster: RNA helicase; n=1; Guillardia theta|Rep:
RNA helicase - Guillardia theta (Cryptomonas phi)
Length = 381
Score = 202 bits (494), Expect = 1e-50
Identities = 124/371 (33%), Positives = 213/371 (57%), Gaps = 16/371 (4%)
Query: 80 FEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMIAQSQSGTGKTAAFVLAML 139
F+ L LK +LL G+ +G+ PS IQE +P LA ++++A+S++GTGKT +F++ +L
Sbjct: 17 FKDLKLKNDLLLGLNDLGYEHPSLIQEKIIP--LAINNKDILARSKNGTGKTLSFLIPIL 74
Query: 140 SRVDSNKNYPQVLCLSPTYELAIQTGEVAAKMAKFCPEIKLKYAVRGEELPRGSKITDHI 199
+ S + + L PT ELA+Q + K++K+ I L+ ++ + + I +I
Sbjct: 75 QNIYSESYGIESIILVPTRELALQISSLLRKLSKYMKNINLQVTGVDSKIDKNN-IDFNI 133
Query: 200 LIGTPGKMFDWGVKFGMFDMGKI-KVFVLDEADVMINRQGHQDQCIRIHKCLPSTCQMMF 258
L+GTPGK++D K ++ K K VLDEAD +++ + + ++ Q+M
Sbjct: 134 LLGTPGKIYDCLCKN---EVNKTCKTLVLDEADKLLSGEVYDTTLKILNHYKNKISQIML 190
Query: 259 FSATYGTAVMQFAEIIVSNPIIIRLLREEESLDNIKQYYVKCKSAEDKYRAICNIYGVIT 318
FSAT+ + ++ ++NPI + L+ E L+ I Q+Y S K + I NI +
Sbjct: 191 FSATFPYHIQNIKKMYMNNPIEVNLMNELV-LEKISQFYAYT-SENKKIQCIKNILSKVN 248
Query: 319 IGQAIIFCHTRKTASWLSEKMSKDGHSVAVLSGELTVEQRIAVLDRFRVGLEKVLITTNV 378
I Q++ FC++ L++K++ G+ + ++ ++ R + FR+G K+L+++++
Sbjct: 249 INQSVFFCNSVNRVELLAKKITDFGYPCYFIHAKMRLDIRNKIFHDFRIGKSKLLVSSDL 308
Query: 379 LSRGIDVEQVTLVVNFDMPMDMNRKADCETYLHRIGRTGRFGKAGIAINLIDSPQAMEIC 438
++RGID+ + LVVNFD+P+ E+YLHRIGRTGRFGK GIAI+LI + +E
Sbjct: 309 ITRGIDIPNINLVVNFDLPL------SSESYLHRIGRTGRFGKHGIAISLITEDE-LETF 361
Query: 439 TDIEAHFGKKI 449
IE G +I
Sbjct: 362 FRIENELGIEI 372
>UniRef50_Q30SZ2 Cluster: DEAD/DEAH box helicase-like; n=1;
Thiomicrospira denitrificans ATCC 33889|Rep: DEAD/DEAH
box helicase-like - Thiomicrospira denitrificans (strain
ATCC 33889 / DSM 1351)
Length = 432
Score = 202 bits (492), Expect = 2e-50
Identities = 130/378 (34%), Positives = 207/378 (54%), Gaps = 21/378 (5%)
Query: 79 TFEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMIAQSQSGTGKTAAFVLAM 138
+FE L + LL + +G+ P+ IQ A+P +LA ++ A +Q+GTGKTAAF L M
Sbjct: 2 SFEKLGVIKPLLSAIKDLGYEKPTTIQTRAIPLILAK--SDVFATAQTGTGKTAAFGLGM 59
Query: 139 LSRV----DSNKNYPQVLCLSPTYELAIQTGEVAAKMAKFCPEIKLKYAVRGEELPRGSK 194
L R+ D + + L ++PT EL+IQ E AK I + V G++L K
Sbjct: 60 LQRLRKTSDDKQRALRGLVIAPTRELSIQIYEDLQSYAKNMG-INIAVLVGGKDLESQQK 118
Query: 195 ITDH---ILIGTPGKMFDWGVKFGMFDMGKIKVFVLDEADVMINRQGHQDQCIRIHKCLP 251
I I+I TPG++ + V G+ + +++FVLDEAD M++ G + RIH LP
Sbjct: 119 ILKEGVDIVIATPGRVLEH-VDKGL-SLSHVEIFVLDEADRMLD-MGFMKEIRRIHPILP 175
Query: 252 STCQMMFFSATYGTAVMQFAEIIVSNPIIIRLLREEESLDNIKQYYVKCKSAEDKYRAIC 311
Q + FSAT+ V + +++I++ P I ++ ++D I Q E K +
Sbjct: 176 KRHQTLLFSATFSDKVRKLSKLILTKPAFIETSKKNSTVDTINQV-AYLVDTEKKAPLLA 234
Query: 312 NIYGVITIGQAIIFCHTRKTASWLSEKMSKDGHSVAVLSGELTVEQRIAVLDRFRVGLEK 371
I G Q ++F T+ +A L ++ KDG ++ G+ T R+ L+ F+ G K
Sbjct: 235 YIIGSRNFRQVLVFTRTKASADLLVVELKKDGLKCGIIHGDKTQANRLKTLNEFKEGKIK 294
Query: 372 VLITTNVLSRGIDVEQVTLVVNFDMPMDMNRKADCETYLHRIGRTGRFGKAGIAINLIDS 431
VL+ T++ SRG+D+E++ V+N+++P + E Y+HR+GRTGR G+ G+AI+LID
Sbjct: 295 VLVATDIASRGLDIEELPFVINYELP------SIPEDYVHRVGRTGRAGRDGMAISLIDI 348
Query: 432 PQAMEICTDIEAHFGKKI 449
+ +I DIE G KI
Sbjct: 349 YEKFDI-KDIEKLIGMKI 365
>UniRef50_A6TUK6 Cluster: DEAD/DEAH box helicase domain protein;
n=2; Firmicutes|Rep: DEAD/DEAH box helicase domain
protein - Alkaliphilus metalliredigens QYMF
Length = 484
Score = 202 bits (492), Expect = 2e-50
Identities = 127/387 (32%), Positives = 210/387 (54%), Gaps = 22/387 (5%)
Query: 80 FEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMIAQSQSGTGKTAAFVLAML 139
F L LLK + + F +P+K+Q+ +P +L +++I +SQ+G+GKTAAF + +
Sbjct: 6 FSDYQLSDELLKSISMLNFESPTKVQQQVIPAILEH--KDIIVKSQTGSGKTAAFAIPIC 63
Query: 140 SRVDSNKNYPQVLCLSPTYELAIQTGEVAAKMAKFCPEIKLKYAVRGE----ELPRGSKI 195
VD ++N PQ L L PT ELAIQ E + +F +K+ AV G+ + K
Sbjct: 64 QLVDWDENKPQALVLVPTRELAIQVKEDMFNIGRF-KRLKVA-AVYGKAPFYHQEKELKQ 121
Query: 196 TDHILIGTPGKMFDWGVKFGMFDMGKIKVFVLDEADVMINRQGHQDQCIRIHKCLPSTCQ 255
H+++GTPG++ D K G FD +IK V+DEAD M N G DQ I K L
Sbjct: 122 KTHVVVGTPGRIIDHMEK-GTFDTSQIKYLVIDEADEMFN-MGFVDQIETIIKDLSKKRV 179
Query: 256 MMFFSATYGTAVMQFAEIIVSNPIIIRLLREEESLDNIKQ--YYVKCKSAEDKYRAICNI 313
M SAT +A+ + + +PI + E ++D I Q Y V+ + DK + + +I
Sbjct: 180 TMLLSATMPSAIETLSNRYMKDPIHAEIEEESSAVDRISQERYTVEYR---DKMKLLSDI 236
Query: 314 YGVITIGQAIIFCHTRKTASWLSEKMSKDGHSVAVLSGELTVEQRIAVLDRFRVGLEKVL 373
V IIFC+T++ +++++ + ++ + G + R+ V++ F+ G + L
Sbjct: 237 TIVENPDSCIIFCNTKQRVDEVNDELIRLNYTCEKIHGGMEQRDRVRVMNEFKQGYFRYL 296
Query: 374 ITTNVLSRGIDVEQVTLVVNFDMPMDMNRKADCETYLHRIGRTGRFGKAGIAINLIDSPQ 433
+ T+V +RGID++ ++LV+N+D+P D E+Y+HRIGRTGR + G AI + +
Sbjct: 297 VATDVAARGIDIDNISLVINYDIPQDK------ESYVHRIGRTGRISREGRAITFVTQYE 350
Query: 434 AMEICTDIEAHFGKKIQLLDIEDAEEI 460
+ DI + GK+I L+ + E +
Sbjct: 351 D-KFLKDIHRYIGKEIPLMQRPEIETV 376
>UniRef50_Q11039 Cluster: Cold-shock DEAD box protein A homolog;
n=31; Bacteria|Rep: Cold-shock DEAD box protein A
homolog - Mycobacterium tuberculosis
Length = 563
Score = 200 bits (489), Expect = 5e-50
Identities = 122/378 (32%), Positives = 202/378 (53%), Gaps = 25/378 (6%)
Query: 72 SPLYSVKTFEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMIAQSQSGTGKT 131
SP S TF L + P +L+ + +G+ +P+ IQ +P L+A +++ +Q+GTGKT
Sbjct: 7 SPAASAATFADLQIHPRVLRAIGDVGYESPTAIQAATIPALMAG--SDVVGLAQTGTGKT 64
Query: 132 AAFVLAMLSRVDSNKNYPQVLCLSPTYELAIQTGEVAAKMAKFCPEIKL-------KYAV 184
AAF + MLS++D PQ L L PT ELA+Q E + + ++ + YAV
Sbjct: 65 AAFAIPMLSKIDITSKVPQALVLVPTRELALQVAEAFGRYGAYLSQLNVLPIYGGSSYAV 124
Query: 185 RGEELPRGSKITDHILIGTPGKMFDWGVKFGMFDMGKIKVFVLDEADVMINRQGHQDQCI 244
+ L RG+++ ++GTPG+M D ++ D+ ++ VLDEAD M+ G D
Sbjct: 125 QLAGLRRGAQV----VVGTPGRMIDH-LERATLDLSRVDFLVLDEADEMLT-MGFADDVE 178
Query: 245 RIHKCLPSTCQMMFFSATYGTAVMQFAEIIVSNPIIIRLLREEESLDNIKQYYVKCKSAE 304
RI P Q+ FSAT A+ + + + +P + + +NI Q Y++
Sbjct: 179 RILSETPEYKQVALFSATMPPAIRKLSAKYLHDPFEVTCKAKTAVAENISQSYIQVARKM 238
Query: 305 DKYRAICNIYGVITIGQAIIFCHTRKTASWLSEKMSKDGHSVAVLSGELTVEQRIAVLDR 364
D A+ + V I+F T++ ++EK+ G S A +SG++ QR +
Sbjct: 239 D---ALTRVLEVEPFEAMIVFVRTKQATEEIAEKLRARGFSAAAISGDVPQAQRERTITA 295
Query: 365 FRVGLEKVLITTNVLSRGIDVEQVTLVVNFDMPMDMNRKADCETYLHRIGRTGRFGKAGI 424
R G +L+ T+V +RG+DVE+++ V+N+D+P D E+Y+HRIGRTGR G++G
Sbjct: 296 LRDGDIDILVATDVAARGLDVERISHVLNYDIP------HDTESYVHRIGRTGRAGRSGA 349
Query: 425 AINLIDSPQAMEICTDIE 442
A+ + SP+ + + IE
Sbjct: 350 ALIFV-SPRELHLLKAIE 366
>UniRef50_Q1QYG3 Cluster: DEAD/DEAH box helicase-like protein; n=1;
Chromohalobacter salexigens DSM 3043|Rep: DEAD/DEAH box
helicase-like protein - Chromohalobacter salexigens
(strain DSM 3043 / ATCC BAA-138 / NCIMB13768)
Length = 568
Score = 200 bits (487), Expect = 8e-50
Identities = 125/385 (32%), Positives = 202/385 (52%), Gaps = 15/385 (3%)
Query: 79 TFEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMIAQSQSGTGKTAAFVLAM 138
TF L L +L + +G+ PS IQ +P LL ++++ Q+Q+GTGKTAAF L +
Sbjct: 10 TFAELSLPSTILSTLETLGYETPSLIQAKTIPALLEG--RDVLGQAQTGTGKTAAFALPL 67
Query: 139 LSRVDSNKNYPQVLCLSPTYELAIQTGEVAAKMAKFCPEIKLKYAVRGEELPR---GSKI 195
LSR+D + PQVL L+PT ELA Q + + +++ G+E G +
Sbjct: 68 LSRLDLQRREPQVLVLAPTRELAQQVAASFVQYGRGVKGLEVLSLCGGQEYREQLSGLRR 127
Query: 196 TDHILIGTPGKMFDWGVKFGMFDMGKIKVFVLDEADVMINRQGHQDQCIRIHKCLPSTCQ 255
+++GTPG++ D + G + + VLDEAD M+ R G D R+ P Q
Sbjct: 128 GAQVIVGTPGRVIDH-LDRGSLKLDGLNALVLDEADEML-RMGFIDDVKRVVSDTPKDAQ 185
Query: 256 MMFFSATYGTAVMQFAEIIVSNPIIIRLLREEESLDNIKQYYVKCKSAEDKYRAICNIYG 315
+FFSAT + + + +P+ I + + ++ + I+Q V+ + K A+ +
Sbjct: 186 RVFFSATLPDEISRIVNHYLVDPLRIAIETKTKTAEGIEQRLVRIEGGA-KLEALSRLLE 244
Query: 316 VITIGQAIIFCHTRKTASWLSEKMSKDGHSVAVLSGELTVEQRIAVLDRFRVGLEKVLIT 375
V + AI+F TR + L E++ G + A LSG+L R ++R + G VLI
Sbjct: 245 VEPVDAAIVFVRTRAACTTLVEQLLLRGVNAAALSGDLDQSLRERTVERLKRGKVDVLIA 304
Query: 376 TNVLSRGIDVEQVTLVVNFDMPMDMNRKADCETYLHRIGRTGRFGKAGIAINLIDSPQAM 435
T+V +RG+DV ++T V N+D+P D E Y HRIGRTGR G+ G+AI +
Sbjct: 305 TDVAARGLDVPRITHVFNYDLPQ------DAEAYTHRIGRTGRAGRTGVAITFAGGREQR 358
Query: 436 EICTDIEAHFGKKIQLLDIEDAEEI 460
+ D+E G+++Q +++ D + I
Sbjct: 359 RV-RDMERVTGQQMQEVELPDEDAI 382
>UniRef50_A7JLA3 Cluster: ATP-dependent RNA helicase; n=20;
Francisella|Rep: ATP-dependent RNA helicase -
Francisella tularensis subsp. novicida GA99-3548
Length = 569
Score = 198 bits (483), Expect = 3e-49
Identities = 121/388 (31%), Positives = 211/388 (54%), Gaps = 17/388 (4%)
Query: 78 KTFEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMIAQSQSGTGKTAAFVLA 137
K F L L +++ V +G+ P+ IQ+ A+P +L+ ++++ Q+Q+GTGKTAAF L
Sbjct: 7 KDFSQLGLNQDIVDTVIKLGYENPTPIQQYAIPYILSG--RDVLGQAQTGTGKTAAFALP 64
Query: 138 MLSRVD--SNKNYPQVLCLSPTYELAIQTGEVAAKMAKFCPEIKLKYAVRGEELP---RG 192
+++ +D S PQVL L+PT ELAIQ E AK P + + G+E R
Sbjct: 65 LINNMDLASRDRAPQVLVLAPTRELAIQVAEQFEAFAKNVPNLDVACIYGGQEYGSQIRA 124
Query: 193 SKITDHILIGTPGKMFDWGVKFGMFDMGKIKVFVLDEADVMINRQGHQDQCIRIHKCLPS 252
K +++GT G++ D ++ G + ++ VLDEAD M+ R G D + +
Sbjct: 125 LKQGVKVVVGTTGRVMDH-IEKGTLQLDNLRALVLDEADEML-RMGFIDDVKFVLSHVSD 182
Query: 253 TCQMMFFSATYGTAVMQFAEIIVSNPIIIRLLREEESLDNIKQYYVKCKSAEDKYRAICN 312
CQ + FSAT T + E + NP I++ + ++ + + Q ++ K K A+
Sbjct: 183 ECQRLLFSATIPTDIADIIEEYLRNPCKIQVKAKTKTANTVTQKFIVIKGFR-KIDALDR 241
Query: 313 IYGVITIGQAIIFCHTRKTASWLSEKMSKDGHSVAVLSGELTVEQRIAVLDRFRVGLEKV 372
+ IIF T+ + +++ + G+ VA ++G++ QR ++D+FR +
Sbjct: 242 LLETEETDGVIIFVKTKTSTIEVTDNLKALGYKVAAINGDMQQSQREYIVDQFRSAKSDI 301
Query: 373 LITTNVLSRGIDVEQVTLVVNFDMPMDMNRKADCETYLHRIGRTGRFGKAGIAINLIDSP 432
L+ T+V++RGID+E+++ V+N+DMP D +TY+HRIGRTGR G+ G +I+L+
Sbjct: 302 LVATDVVARGIDLERISHVINYDMP------NDTDTYVHRIGRTGRAGREGTSISLVPLK 355
Query: 433 QAMEICTDIEAHFGKKIQLLDIEDAEEI 460
+ M +E G +Q + + A+++
Sbjct: 356 E-MRFLRTLERFTGSPMQEVFMPSAKDL 382
>UniRef50_A0BEU9 Cluster: Chromosome undetermined scaffold_102,
whole genome shotgun sequence; n=2; Paramecium
tetraurelia|Rep: Chromosome undetermined scaffold_102,
whole genome shotgun sequence - Paramecium tetraurelia
Length = 395
Score = 198 bits (483), Expect = 3e-49
Identities = 116/393 (29%), Positives = 213/393 (54%), Gaps = 16/393 (4%)
Query: 65 IQRKDPNSPLYSVKTFEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMIAQS 124
++ K P+ TFE++ L+ LL+G+ A GF P ++Q+ AL L+ ++++ Q+
Sbjct: 10 VEWKTNEEPIIQ-STFESMKLRKELLRGINAFGFIRPLEVQQRALVPLIQG--RDVVIQN 66
Query: 125 QSGTGKTAAFVLAMLSRVDSNKNYPQVLCLSPTYELAIQTGEVAAKMAKFCPEIKLKYAV 184
TGKT L++LS D + QVL L T +L + + + KF + +
Sbjct: 67 FRSTGKTTVMSLSVLSIFDLSVKKIQVLILQKTRKLTEENAGLIMALGKFL-NVSIHACS 125
Query: 185 RGEELPRGSKITDH---ILIGTPGKMFDWGVKFGMFDMGKIKVFVLDEADVMINRQGHQD 241
G + + I++GTP ++F+ V+ +K+ +LDEAD M+ + +
Sbjct: 126 EGNSIQDDISVVQQGVQIVLGTPDRVFEL-VQRKEISFAHLKMIILDEADEMLIDES-KS 183
Query: 242 QCIRIHKCLPSTCQMMFFSATYGTAVMQFAEIIVSNPIIIRLLREEESLDNIKQYYVKCK 301
I K LP Q + +AT ++ F E +NP++I R E +L+ I+Q++++
Sbjct: 184 LVYCIFKYLPPKPQYVLVTATLSQDILDFIEKFFNNPLVIMDKRNELTLEGIQQFFIQVD 243
Query: 302 SAEDKYRAICNIYGVITIGQAIIFCHTRKTASWLSEKMSKDGHSVAVLSGELTVEQRIAV 361
+ K+ +C++Y + +I Q++IFC T++ WL KM + +V + ++ +QR +
Sbjct: 244 KEDWKFETLCDLYEIASITQSVIFCQTKQKCEWLVNKMLESNFTVVQIHEGMSQQQRNEI 303
Query: 362 LDRFRVGLEKVLITTNVLSRGIDVEQVTLVVNFDMPMDMNRKADCETYLHRIGRTGRFGK 421
+ ++ G+++VLI T++L R +D+E V+L++N+D+P E Y+ RIGR G+FG+
Sbjct: 304 MRDYKQGIKRVLIGTDILRRCLDIEYVSLIINYDVPTSK------ELYILRIGRKGKFGR 357
Query: 422 AGIAINLIDSPQAMEICTDIEAHFGKKIQLLDI 454
G+AI LI S + +I IE ++ +I+ L I
Sbjct: 358 KGVAITLIRS-EDFKILNQIEQYYSTQIKELPI 389
>UniRef50_Q5NZY2 Cluster: ATP-dependent RNA helicase DeaD; n=18;
Bacteria|Rep: ATP-dependent RNA helicase DeaD - Azoarcus
sp. (strain EbN1) (Aromatoleum aromaticum (strain EbN1))
Length = 658
Score = 197 bits (480), Expect = 6e-49
Identities = 129/394 (32%), Positives = 210/394 (53%), Gaps = 17/394 (4%)
Query: 72 SPLYS-VKTFEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMIAQSQSGTGK 130
+P+ S +++F L L+ LL + +G+ PS IQ +P LLA +++ ++Q+GTGK
Sbjct: 37 NPMTSPIESFAQLDLRAPLLDALSEIGYETPSPIQAICIPHLLAG--HDLLGEAQTGTGK 94
Query: 131 TAAFVLAMLSRVDSNKNYPQVLCLSPTYELAIQTGEVAAKMAKFCPEIKLKYAVRGEELP 190
TAAF L +L R+D PQVL L+PT ELAIQ E + AK P + G+ +
Sbjct: 95 TAAFALPLLDRLDLAVKNPQVLVLAPTRELAIQVAEAFQRYAKNLPGFHVLPVYGGQSMV 154
Query: 191 ---RGSKITDHILIGTPGKMFDWGVKFGMFDMGKIKVFVLDEADVMINRQGHQDQCIRIH 247
R H+++GTPG++ D ++ ++ + VLDEAD M+ R G D I
Sbjct: 155 VQLRQLARGAHVIVGTPGRVMDH-IERKSLNLDSLTTLVLDEADEML-RMGFIDDVEWIL 212
Query: 248 KCLPSTCQMMFFSATYGTAVMQFAEIIVSNPIIIRLLREEESLDNIKQYYVKCKSAEDKY 307
+ P+ Q FSAT A+ + A + P +++ ++ +Q Y + A K
Sbjct: 213 QHTPAERQTALFSATMPDAIRRVAHRYLREPREVKIKASTTTVSTTRQRYCQISVAH-KL 271
Query: 308 RAICNIYGVIT-IGQAIIFCHTRKTASWLSEKMSKDGHSVAVLSGELTVEQRIAVLDRFR 366
A+ I V AIIF T+ L++K+ G+S A L+G++T + R V+++ +
Sbjct: 272 DALTRILEVEEDFDAAIIFVRTKTATVELADKLEARGYSAAALNGDMTQQLRERVIEQLK 331
Query: 367 VGLEKVLITTNVLSRGIDVEQVTLVVNFDMPMDMNRKADCETYLHRIGRTGRFGKAGIAI 426
G +++ T+V +RG+DV +++ V+N+D+P D E Y+HRIGRTGR G+ G AI
Sbjct: 332 GGQLDIVVATDVAARGLDVSRISHVINYDIPY------DTEAYVHRIGRTGRAGRTGSAI 385
Query: 427 NLIDSPQAMEICTDIEAHFGKKIQLLDIEDAEEI 460
L +P+ M + IE + I+ L + E +
Sbjct: 386 -LFVAPREMRMLKVIERATRQPIEALQLPSREAV 418
>UniRef50_Q3AX69 Cluster: DEAD/DEAH box helicase-like; n=15;
Cyanobacteria|Rep: DEAD/DEAH box helicase-like -
Synechococcus sp. (strain CC9902)
Length = 624
Score = 197 bits (480), Expect = 6e-49
Identities = 122/378 (32%), Positives = 203/378 (53%), Gaps = 15/378 (3%)
Query: 80 FEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMIAQSQSGTGKTAAFVLAML 139
F+ LLK + G++ PS IQ+ A P L+ ++++ Q+Q+GTGKTAAF L +L
Sbjct: 73 FDGFGFSEALLKTLADKGYSDPSPIQKAAFPELMLG--RDLVGQAQTGTGKTAAFALPLL 130
Query: 140 SRVDSNKNYPQVLCLSPTYELAIQTGEVAAKMAKFCPEIKLKYAVRGEELPRGSKITDH- 198
R++S + PQVL L+PT ELA+Q + A P +K+ G +
Sbjct: 131 ERLESGQKTPQVLVLAPTRELAMQVADSFKAYAAGHPHLKVLAVYGGTDFRSQISTLRRG 190
Query: 199 --ILIGTPGKMFDWGVKFGMFDMGKIKVFVLDEADVMINRQGHQDQCIRIHKCLPSTCQM 256
+++GTPG++ D ++ G D + VLDEAD M+ R G D I + LP Q+
Sbjct: 191 VDVVVGTPGRVMDH-MRQGTLDTSGLTSLVLDEADEML-RMGFIDDVEWILEQLPKERQV 248
Query: 257 MFFSATYGTAVMQFAEIIVSNPIIIRLLREEESLDNIKQYYVKCKSAEDKYRAICNIYGV 316
+ FSAT + + ++ +++P + + +++ I+Q + + K A+ +
Sbjct: 249 VLFSATMPPEIRRLSKRYLNDPAEVTIKTKDQDGKLIRQRAITVPMSH-KLEALQRVLDA 307
Query: 317 ITIGQAIIFCHTRKTASWLSEKMSKDGHSVAVLSGELTVEQRIAVLDRFRVGLEKVLITT 376
IIF T+ ++E + GH VAVL+G++ QR ++R R G VL+ T
Sbjct: 308 CGGEGVIIFARTKVITLTVAETLEAAGHQVAVLNGDVPQNQRERTVERLRSGSVDVLVAT 367
Query: 377 NVLSRGIDVEQVTLVVNFDMPMDMNRKADCETYLHRIGRTGRFGKAGIAINLIDSPQAME 436
+V +RG+DVE++ LV+N+DMP D E Y+HRIGRTGR G+ G A+ L +P+
Sbjct: 368 DVAARGLDVERIGLVINYDMPF------DSEAYVHRIGRTGRAGRTGEAV-LFMTPRERR 420
Query: 437 ICTDIEAHFGKKIQLLDI 454
++E G+ I+++++
Sbjct: 421 FIRNLERATGQPIEMMEV 438
>UniRef50_Q1MY97 Cluster: DEAD/DEAH box helicase-like protein; n=2;
Gammaproteobacteria|Rep: DEAD/DEAH box helicase-like
protein - Oceanobacter sp. RED65
Length = 614
Score = 197 bits (480), Expect = 6e-49
Identities = 128/384 (33%), Positives = 204/384 (53%), Gaps = 15/384 (3%)
Query: 80 FEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMIAQSQSGTGKTAAFVLAML 139
F +L L NLL+ + G+ PS IQE ++P LL ++++ +Q+GTGKTAAF L +L
Sbjct: 8 FASLGLPFNLLRAIEEQGYEQPSPIQEQSIPHLLEG--KDVLGLAQTGTGKTAAFTLPLL 65
Query: 140 SRVDSNKNYPQVLCLSPTYELAIQTGEVAAKMAKFCPEIKLKYAVRGEELP---RGSKIT 196
+R + PQVL L+PT ELA Q +K +K+ G + R K
Sbjct: 66 ARTQNEVREPQVLVLAPTRELAQQVAMAVESYSKHESNVKVASIYGGSDFGSQFRALKQG 125
Query: 197 DHILIGTPGKMFDWGVKFGMFDMGKIKVFVLDEADVMINRQGHQDQCIRIHKCLPSTCQM 256
++GTPG++ D ++ G + I+ VLDEAD M+ R G D + +P Q+
Sbjct: 126 PQWVVGTPGRVMDH-IRRGTLKLEGIRAVVLDEADEML-RMGFIDDVDWVLDQVPEKRQI 183
Query: 257 MFFSATYGTAVMQFAEIIVSNPIIIRLLREEESLDNIKQYYVKCKSAEDKYRAICNIYGV 316
FSAT + AE + P IR+ + + ++I+Q Y K DK +A+ I
Sbjct: 184 ALFSATMPKQIKAVAEKHLREPTEIRIKSKTATNESIEQKYWLVKGV-DKNQALLRICET 242
Query: 317 ITIGQAIIFCHTRKTASWLSEKMSKDGHSVAVLSGELTVEQRIAVLDRFRVGLEKVLITT 376
++F T++ +++ M G L+G++ QR +DR + G +L+ T
Sbjct: 243 SEFDAMMVFVRTKQATEEVADYMRSHGLRCEALNGDVAQAQRERAVDRLKKGQVDMLVAT 302
Query: 377 NVLSRGIDVEQVTLVVNFDMPMDMNRKADCETYLHRIGRTGRFGKAGIAINLIDSPQAME 436
+V +RG+DVE+++ VVN+D+P D E+Y+HRIGRTGR G++G AI L P+
Sbjct: 303 DVAARGLDVERISHVVNYDIPY------DAESYVHRIGRTGRAGRSGEAI-LFVRPRERR 355
Query: 437 ICTDIEAHFGKKIQLLDIEDAEEI 460
+ + IE KKIQ +++ A+E+
Sbjct: 356 MLSTIERVTRKKIQQIELPTAKEV 379
>UniRef50_Q5L3G9 Cluster: DEAD-box ATP-dependent RNA helicase ydbR;
n=7; Bacteria|Rep: DEAD-box ATP-dependent RNA helicase
ydbR - Geobacillus kaustophilus
Length = 467
Score = 197 bits (480), Expect = 6e-49
Identities = 117/375 (31%), Positives = 211/375 (56%), Gaps = 16/375 (4%)
Query: 79 TFEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMIAQSQSGTGKTAAFVLAM 138
TF+ L L ++K + MGF + IQ +P L + +++I Q+Q+GTGKTAAF + +
Sbjct: 3 TFQELGLSQEVMKAIERMGFEETTPIQAKTIPLSLQN--KDVIGQAQTGTGKTAAFGIPI 60
Query: 139 LSRVDSNKNYPQVLCLSPTYELAIQTGEVAAKMAKFCPEIKLKYAVRGEELPR---GSKI 195
+ +V+ + Q L ++PT ELAIQ E K+ +++ G+++ R K
Sbjct: 61 VEKVNVKNSAVQALVVAPTRELAIQVSEELYKIGAV-KRVRVLPIYGGQDIERQIRALKK 119
Query: 196 TDHILIGTPGKMFDWGVKFGMFDMGKIKVFVLDEADVMINRQGHQDQCIRIHKCLPSTCQ 255
H+++GTPG++ D + G + + VLDEAD M+N G + I +P+ Q
Sbjct: 120 HPHVIVGTPGRIIDH-INRGTLRLEHVHTVVLDEADEMLN-MGFIEDIEAILSHVPAERQ 177
Query: 256 MMFFSATYGTAVMQFAEIIVSNPIIIRLLREEESLDNIKQYYVKCKSAEDKYRAICNIYG 315
+ FSAT + + AE ++ P ++++ +E ++ NI+QYY++ + K+ + +
Sbjct: 178 TLLFSATMPDPIRRIAERFMNEPELVKVKAKEMTVPNIQQYYLEVHEKK-KFDILTRLLD 236
Query: 316 VITIGQAIIFCHTRKTASWLSEKMSKDGHSVAVLSGELTVEQRIAVLDRFRVGLEKVLIT 375
+ AI+F T++ L+E ++ G++ + G+L+ +R++VL +F+ G ++L+
Sbjct: 237 IQAPELAIVFGRTKRRVDELAEALNLRGYAAEGIHGDLSQAKRLSVLRKFKEGAIEILVA 296
Query: 376 TNVLSRGIDVEQVTLVVNFDMPMDMNRKADCETYLHRIGRTGRFGKAGIAINLIDSPQAM 435
T+V +RG+D+ VT V NFD+P D E+Y+HRIGRTGR GK G+A+ + +P+ +
Sbjct: 297 TDVAARGLDISGVTHVYNFDIPQDP------ESYVHRIGRTGRAGKTGVAMTFV-TPREI 349
Query: 436 EICTDIEAHFGKKIQ 450
IE +K++
Sbjct: 350 GQLHHIERTTKRKME 364
>UniRef50_Q14NT1 Cluster: Putative atp-dependent rna helicase
protein; n=1; Spiroplasma citri|Rep: Putative
atp-dependent rna helicase protein - Spiroplasma citri
Length = 443
Score = 196 bits (479), Expect = 8e-49
Identities = 117/377 (31%), Positives = 207/377 (54%), Gaps = 13/377 (3%)
Query: 80 FEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMIAQSQSGTGKTAAFVLAML 139
F L+L P L + + MG+ ++IQE A+P L Q++I +S +GTGKT AF++ +L
Sbjct: 3 FNTLNLYPALQRMIAKMGYTNLTEIQEKAIPVALNS--QDIIGKSHTGTGKTVAFIVPIL 60
Query: 140 SRVDSNKNYPQVLCLSPTYELAIQTGEVAAKMAKFCPEIKLKYAVRGEELPRG--SKITD 197
++++ PQ + L PT+ELA Q E K A + + G + R +
Sbjct: 61 QNLNTHLKQPQAIILCPTHELASQIIEQVRKFATYLEGVNATLICGGSHIQRQIYALRKS 120
Query: 198 HILIGTPGKMFDWGVKFGMFDMGKIKVFVLDEADVMINRQGHQDQCIRIHKCLPSTCQMM 257
+I++GTPG++ D + + KIK VLDEAD M+ + G + ++ + P+ Q +
Sbjct: 121 NIIVGTPGRIADH-INRKTLRLDKIKTIVLDEADEML-KMGFKTDLDKVFQNAPNKYQTL 178
Query: 258 FFSATYGTAVMQFAEIIVSNPIIIRLLREEESLDNIKQYYVKCKSAEDKYRAICNIYGVI 317
FSAT V++ A +NP+ I + + +NI Q+YV S K + +Y +
Sbjct: 179 LFSATMPKQVLEIANNYQTNPVEIVVTKNVIEQNNISQHYVNAISYH-KEDVLIALYKHL 237
Query: 318 TIGQAIIFCHTRKTASWLSEKMSKDGHSVAVLSGELTVEQRIAVLDRFRVGLEKVLITTN 377
++IIF +T+ + ++E ++ +G +++G+ + +R + FR G +V++ T+
Sbjct: 238 QPKRSIIFSNTKVFTNKIAEMLTNNGIPCCIINGDKSRYERGQAMRLFRDGKVRVMVATD 297
Query: 378 VLSRGIDVEQVTLVVNFDMPMDMNRKADCETYLHRIGRTGRFGKAGIAINLIDSPQAMEI 437
V +RGID++ + V+N+D+P + E+Y+HRIGRT R G G+AI+++ + +
Sbjct: 298 VAARGIDIDNIDYVINYDIPTER------ESYIHRIGRTARAGATGVAISIVSNRNDLRE 351
Query: 438 CTDIEAHFGKKIQLLDI 454
+ A+ KKI+LLDI
Sbjct: 352 IQHLGAYQKKKIELLDI 368
>UniRef50_A6DIU5 Cluster: Probable ATP dependent RNA helicase; n=1;
Lentisphaera araneosa HTCC2155|Rep: Probable ATP
dependent RNA helicase - Lentisphaera araneosa HTCC2155
Length = 537
Score = 196 bits (479), Expect = 8e-49
Identities = 129/386 (33%), Positives = 202/386 (52%), Gaps = 13/386 (3%)
Query: 80 FEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMIAQSQSGTGKTAAFVLAML 139
F AL L+P + + + A GF PS IQE A+P LL+ ++I Q+Q+GTGKTAAF L ++
Sbjct: 4 FTALGLEPWITQCLEAKGFKEPSPIQEQAIPVLLSQD-HDIIGQAQTGTGKTAAFGLPIV 62
Query: 140 SRVDSNKNYPQVLCLSPTYELAIQTGEVAAKMAKF--CPEIKLKYAVRGEELPRGSKITD 197
+++ PQ L L PT ELAIQ E K + L + R K
Sbjct: 63 QKIEPGLKKPQALILCPTRELAIQVNEEIKSFCKGRGITTVTLYGGAPIMDQKRALKKGV 122
Query: 198 HILIGTPGKMFDWGVKFGMFDMGKIKVFVLDEADVMINRQGHQDQCIRIHKCLPSTCQMM 257
+++ TPG+ + ++ G ++ ++ VLDEAD M+N G + ++ K P ++
Sbjct: 123 DLVVATPGRCIHF-IEDGKLELDSLEYLVLDEADEMLN-MGFVEDVEKVLKASPDDRTVL 180
Query: 258 FFSATYGTAVMQFAEIIVSNPIIIRLLREEESLDNIKQYYVKCKSAEDKYRAICNIYGVI 317
FSAT + + AE + N I I+ E +++ I Q + E+K+ A+C I +
Sbjct: 181 MFSATMPPRLKKIAESYMHNSITIKAKSETMTMETIDQVVYEAYP-ENKFAALCRIMDLE 239
Query: 318 TIGQAIIFCHTRKTASWLSEKMSKDGHSVAVLSGELTVEQRIAVLDRFRVGLEKVLITTN 377
IIFC T+ +S ++ +G++ + G++ E R +L RFR +LI T+
Sbjct: 240 KDFYGIIFCRTKVEVEKVSAGLANEGYAADYIHGDVAQESRERLLKRFRNRNISLLIATD 299
Query: 378 VLSRGIDVEQVTLVVNFDMPMDMNRKADCETYLHRIGRTGRFGKAGIAINLIDSPQAMEI 437
V +RGIDV ++ +VNF +P E+Y+HRIGRTGR GK G AI LI +P+
Sbjct: 300 VAARGIDVTDLSHIVNFSLPEQF------ESYVHRIGRTGRAGKTGTAITLI-TPKERSK 352
Query: 438 CTDIEAHFGKKIQLLDIEDAEEIEKI 463
+ IE G K + + EE+ K+
Sbjct: 353 MSFIEKKTGAKTERRKLPFGEEMIKL 378
>UniRef50_Q5ZT20 Cluster: ATP-dependent RNA helicase; n=4;
Legionella pneumophila|Rep: ATP-dependent RNA helicase -
Legionella pneumophila subsp. pneumophila (strain
Philadelphia 1 /ATCC 33152 / DSM 7513)
Length = 589
Score = 196 bits (478), Expect = 1e-48
Identities = 123/388 (31%), Positives = 204/388 (52%), Gaps = 15/388 (3%)
Query: 77 VKTFEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMIAQSQSGTGKTAAFVL 136
+ F + L K + M F PS IQ +P +L ++ IA +Q+GTGKTAAF L
Sbjct: 5 ISNFSTFNFSNALNKALEDMKFITPSPIQAQTIPLILQG--RDAIALAQTGTGKTAAFAL 62
Query: 137 AMLSRVDSNKNYPQVLCLSPTYELAIQTGEVAAKMAKFCPEIKLKYAVRGEELPRGSKIT 196
+L + + Q L L+PT ELAIQ E ++K+ + + G+E R K
Sbjct: 63 PILQNLSPEISTTQALILAPTRELAIQVAEQFELLSKYQRNVTIAVLCGGQEYGRQLKQL 122
Query: 197 D---HILIGTPGKMFDWGVKFGMFDMGKIKVFVLDEADVMINRQGHQDQCIRIHKCLPST 253
+++GTPG++ D + G + +K F+LDEAD M+ R G + I + LP
Sbjct: 123 RSGAQVVVGTPGRILDH-IDKGTLLLNNLKTFILDEADEML-RMGFIEDVETILEKLPEK 180
Query: 254 CQMMFFSATYGTAVMQFAEIIVSNPIIIRLLREEESLDNIKQYYVKCKSAEDKYRAICNI 313
QM FSAT + Q A +++P I + E ++ +I+Q ++ S K A+ +
Sbjct: 181 KQMALFSATMPYRIRQIANTYLNDPASIEIRMETATVKSIEQRFLFA-SVHQKPDALIRV 239
Query: 314 YGVITIGQAIIFCHTRKTASWLSEKMSKDGHSVAVLSGELTVEQRIAVLDRFRVGLEKVL 373
V I+F T+ + ++E + + G + G++T R ++ +F+ G +L
Sbjct: 240 LEVEDYQGVIVFVRTKSSTEEVAELLQQHGLRAMAIHGDITQSLRERIIAQFKQGAIDIL 299
Query: 374 ITTNVLSRGIDVEQVTLVVNFDMPMDMNRKADCETYLHRIGRTGRFGKAGIAINLIDSPQ 433
+ T+V +RG+DVE+VT V+N+DMP D ETY+HRIGRTGR G++G+ I L +P+
Sbjct: 300 VATDVAARGLDVERVTHVINYDMPHDN------ETYVHRIGRTGRAGRSGVTI-LFVTPK 352
Query: 434 AMEICTDIEAHFGKKIQLLDIEDAEEIE 461
+ + IE H ++I+ + + + I+
Sbjct: 353 ESRLISSIERHTRQRIEKVQVPNDHMIQ 380
>UniRef50_A6H0L1 Cluster: Probable ATP-dependent RNA helicase,
DEAD/DEAH box family; n=1; Flavobacterium psychrophilum
JIP02/86|Rep: Probable ATP-dependent RNA helicase,
DEAD/DEAH box family - Flavobacterium psychrophilum
(strain JIP02/86 / ATCC 49511)
Length = 644
Score = 196 bits (477), Expect = 1e-48
Identities = 127/388 (32%), Positives = 207/388 (53%), Gaps = 16/388 (4%)
Query: 80 FEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMIAQSQSGTGKTAAFVLAML 139
FE L L +LL+ + +GF P+++QE A+P LL + +++A +Q+GTGKTAAF ++
Sbjct: 4 FEQLGLTESLLRAIIDLGFENPTEVQEKAIPMLL-EKDIDLVALAQTGTGKTAAFGFPVI 62
Query: 140 SRVDSNKNYPQVLCLSPTYELAIQTGEVAAKMAKFCPEIKLKYAVRGE---ELPRGSKIT 196
++D+N Q L LSPT EL +Q +K+ I + G E R K
Sbjct: 63 QKIDANNRNTQALILSPTRELCLQITNELKNYSKYEKGINVVAVYGGASITEQARDIKRG 122
Query: 197 DHILIGTPGKMFDWGVKFGMFDMGKIKVFVLDEADVMINRQGHQDQCIRIHKCLPSTCQM 256
I++ TPG+M D + + D+ +I +LDEAD M+N G + + I P
Sbjct: 123 AQIIVATPGRMQDM-INRRLVDISQINYCILDEADEMLN-MGFYEDIVNILSTTPDEKNT 180
Query: 257 MFFSATYGTAVMQFAEIIVSNPIIIRLLREEESLDNIK-QYYVKCKSAEDKYRAICNIYG 315
FSAT V + + +++PI I + + + +YY+ +A D+Y A+ +
Sbjct: 181 WLFSATMPAEVARIGKQFMTDPIEITVGAKNSGSATVSHEYYLV--NARDRYEALKRLAD 238
Query: 316 VITIGQAIIFCHTRKTASWLSEKMSKDGHSVAVLSGELTVEQRIAVLDRFRVGLEKVLIT 375
+++FC T++ ++EK+ +DG+S A L G+L+ QR V+ FR ++L+
Sbjct: 239 ANPDIFSVVFCRTKRDTQAVAEKLVEDGYSAAALHGDLSQAQRDGVMKAFRGRQIQMLVA 298
Query: 376 TNVLSRGIDVEQVTLVVNFDMPMDMNRKADCETYLHRIGRTGRFGKAGIAINLIDSPQAM 435
T+V +RGIDV+ VT VVN+ +P ++ ETY HR GRTGR GK G +I ++ +
Sbjct: 299 TDVAARGIDVDNVTHVVNYQLPDEI------ETYNHRSGRTGRAGKLGTSIVIVTKSEIR 352
Query: 436 EICTDIEAHFGKKIQLLDIEDAEEIEKI 463
+I + IE +K + I EI +I
Sbjct: 353 KI-SSIERIIKQKFEEKVIPSGIEICEI 379
>UniRef50_O26305 Cluster: ATP-dependent RNA helicase, eIF-4A family;
n=1; Methanothermobacter thermautotrophicus str. Delta
H|Rep: ATP-dependent RNA helicase, eIF-4A family -
Methanobacterium thermoautotrophicum
Length = 425
Score = 195 bits (476), Expect = 2e-48
Identities = 122/388 (31%), Positives = 211/388 (54%), Gaps = 23/388 (5%)
Query: 80 FEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMIAQSQSGTGKTAAFVLAML 139
F + ++ + + MGF + + IQ LP L +++ ++Q+GTGKTAAF + +L
Sbjct: 6 FSEFDISGDINRALDDMGFESTTPIQALTLPVTLDG--MDVVGEAQTGTGKTAAFAIPVL 63
Query: 140 SRVDSNKNYPQVLCLSPTYELAIQTGEVAAKMAKFCPEIKLKYAVRGEELPRGSKITD-- 197
+++ + PQ L + PT EL +Q E ++ K+ ++K+ G+ + G++I
Sbjct: 64 ENLEAER-VPQALIICPTRELCLQVSEEIKRIGKYM-KVKVLAVYGGQSI--GNQIAQLR 119
Query: 198 ---HILIGTPGKMFDWGVKFGMFDMGKIKVFVLDEADVMINRQGHQDQCIRIHKCLPSTC 254
H+++ TPG++ D ++ G D+G I VLDEAD M+N G D RI +P
Sbjct: 120 RGVHVIVATPGRLIDH-IERGTVDLGGISTVVLDEADEMLN-MGFIDDIERILSHVPERR 177
Query: 255 QMMFFSATYGTAVMQFAEIIVSNPIIIRLLREEESLDNIKQYYVKCKSAEDKYRAICNIY 314
Q M FSAT +++ A + NP ++R+ E++ I ++Y K + EDK + I
Sbjct: 178 QTMLFSATVSKPILRIARKYMRNPQVMRV--EKKHSPKIDEFYFKTRE-EDKVELLDWIL 234
Query: 315 GVITIGQAIIFCHTRKTASWLSEKMSKDGHSVAVLSGELTVEQRIAVLDRFRVGLEKVLI 374
I +IFC+T++ L ++++ G+S + G+L+ +R V++RFR G +L+
Sbjct: 235 SSNNIRMGLIFCNTKRRVQRLRRQLNRMGYSADEIHGDLSQSKRERVMERFRRGDFSLLV 294
Query: 375 TTNVLSRGIDVEQVTLVVNFDMPMDMNRKADCETYLHRIGRTGRFGKAGIAINLIDSPQA 434
T+V +RGI V V VVN+D+P + E Y+HRIGRTGR G +G + L+ +
Sbjct: 295 ATDVAARGIHVPDVEAVVNYDLPFEN------EYYVHRIGRTGRAGSSGKSFTLVVGSEV 348
Query: 435 MEICTDIEAHFGKKIQLLDIEDAEEIEK 462
+ I++ GK+I+ ++ EEI +
Sbjct: 349 HRL-RRIQSFTGKRIKQSNMPSPEEIRR 375
>UniRef50_Q8SQM5 Cluster: ATP-dependent RNA helicase eIF4A; n=1;
Encephalitozoon cuniculi|Rep: ATP-dependent RNA helicase
eIF4A - Encephalitozoon cuniculi
Length = 425
Score = 195 bits (476), Expect = 2e-48
Identities = 128/384 (33%), Positives = 217/384 (56%), Gaps = 26/384 (6%)
Query: 62 DIEIQRKDPNSPLYSVKTFEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMI 121
+ E R D +S + T+E LK +LLKG+Y++GF PS IQ+ A+ ++ +++
Sbjct: 23 EFEDLRSD-SSQIRMFDTWEDYGLKEDLLKGIYSIGFETPSFIQKAAIQPIIDG--RDIR 79
Query: 122 AQSQSGTGKTAAFVLAMLSRVDSNKNYPQVLCLSPTYELAIQTGEVAAKMAKFCPEIKLK 181
AQ+QSGTGKT AF +A L D +++ Q+L L+ T E+A Q + F ++
Sbjct: 80 AQAQSGTGKTGAFAVAALQICDMSQDVTQILVLASTREIAAQNAARFEDLGCFMGA-RVA 138
Query: 182 YAVRGEELPRGSKITD---HILIGTPGKMFDWGVKFGMFDMGKIKVFVLDEADVMINRQG 238
G + + HI++GTPG++ + + M IK+FV+DEAD M+ + G
Sbjct: 139 LLSGGSPIAADKVALEKKPHIVVGTPGRV-EHMININELSMDNIKLFVIDEADEML-KAG 196
Query: 239 HQDQCIRIHKCLPST--CQMMFFSATYGTAVMQFAEIIVSNPIIIRLLREEESLDNIKQY 296
Q+Q I + + + Q+ FSATY ++ +E I+ NP+II L +++L I+QY
Sbjct: 197 FQEQVKSIFRRITNKDEVQIAMFSATYDEEELRVSEEILINPVIIDLRYNDQTLKGIRQY 256
Query: 297 YVKC-------KSAED----KYRAICNIYGVITIGQAIIFCHTRKTASWLSEKMSKDGHS 345
++ K ED K + +I+ +GQ+I+F ++++ A + + + +
Sbjct: 257 FIDLRKEPPFRKGREDYLLPKLVTLYDIFRKQRLGQSIVFINSKEDARIVYDWLIRHEWE 316
Query: 346 VAVLSGELTVEQRIAVLDRFRVGLEKVLITTNVLSRGIDVEQVTLVVNFDMPMDMNRKAD 405
++S ELT +R L+RFR G + LI++ +LSRGID++ +++V D+P RK+
Sbjct: 317 CELISAELTQAERERTLNRFRGGTGRCLISSGLLSRGIDIQNLSVVFCLDVP-SFERKS- 374
Query: 406 CETYLHRIGRTGRFGKAGIAINLI 429
TY+HRIGR+GR+G+ GIAIN++
Sbjct: 375 --TYIHRIGRSGRYGRKGIAINIV 396
>UniRef50_Q9KAA6 Cluster: ATP-dependent RNA helicase; n=5;
Firmicutes|Rep: ATP-dependent RNA helicase - Bacillus
halodurans
Length = 539
Score = 195 bits (475), Expect = 2e-48
Identities = 126/384 (32%), Positives = 207/384 (53%), Gaps = 17/384 (4%)
Query: 80 FEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMIAQSQSGTGKTAAFVLAML 139
F L + + K + MGF PS IQ A+P +LA ++I Q+Q+GTGKTAAF + ++
Sbjct: 8 FNELQIGEEIKKAIIEMGFEEPSPIQAKAIPAILAGG--DVIGQAQTGTGKTAAFGIPVV 65
Query: 140 SRVDSNKNYPQVLCLSPTYELAIQTGEVAAKMAKFCPEIKLKYAVRGEELPRGSKITDH- 198
+V + ++ Q L L+PT ELAIQ K++K +I+ G+ + K
Sbjct: 66 EKVSTGRHV-QALILTPTRELAIQVSGEIQKLSKH-KKIRTLPIYGGQSIVHQIKALKQG 123
Query: 199 --ILIGTPGKMFDWGVKFGMFDMGKIKVFVLDEADVMINRQGHQDQCIRIHKCLPSTCQM 256
++IGTPG++ D ++ + + +LDEAD M++ G D I + + + Q
Sbjct: 124 VQVVIGTPGRIIDH-LRRKTLILDHVNTVILDEADEMLD-MGFIDDIESILRQVKNERQT 181
Query: 257 MFFSATYGTAVMQFAEIIVSNPIIIRLLREEESLDNIKQYYVKCKSAEDKYRAICNIYGV 316
+ FSAT A+ + + +++P + + R E + +I Q+Y K +K ++C I
Sbjct: 182 LLFSATMPPAIKKLSRKYMNDPQTVSINRREVTAPSIDQFYYKVLE-RNKLDSLCRIIDS 240
Query: 317 ITIGQAIIFCHTRKTASWLSEKMSKDGHSVAVLSGELTVEQRIAVLDRFRVGLEKVLITT 376
I I+FC T+K + L+E + G+ L G+LT QR AV+ +FR + LI T
Sbjct: 241 EQIDLGILFCRTKKGVAELTEALQARGYIADGLHGDLTQSQRDAVMRKFRDSSIEFLIAT 300
Query: 377 NVLSRGIDVEQVTLVVNFDMPMDMNRKADCETYLHRIGRTGRFGKAGIAINLIDSPQAME 436
+V +RGIDV V+ V+N+D+P D E+Y+HRIGRTGR G+ G+A+ L+ +P+ M+
Sbjct: 301 DVAARGIDVGNVSHVINYDIPQDP------ESYVHRIGRTGRAGRKGLALTLV-TPREMK 353
Query: 437 ICTDIEAHFGKKIQLLDIEDAEEI 460
IE I ++ E++
Sbjct: 354 HLRSIEQEIKMSIPSQEVPTIEDV 377
>UniRef50_Q67NW1 Cluster: ATP-dependent RNA helicase; n=5;
Firmicutes|Rep: ATP-dependent RNA helicase -
Symbiobacterium thermophilum
Length = 526
Score = 195 bits (475), Expect = 2e-48
Identities = 119/354 (33%), Positives = 194/354 (54%), Gaps = 15/354 (4%)
Query: 79 TFEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMIAQSQSGTGKTAAFVLAM 138
TF L L +LK + MGF PS IQ A+P LL +++I Q+Q+GTGKTAAF + +
Sbjct: 7 TFRDLALSEKVLKALDDMGFEEPSPIQAQAIPALLQG--KDVIGQAQTGTGKTAAFGVPI 64
Query: 139 LSRVDSNKNYPQVLCLSPTYELAIQTGEVAAKMAKFCPEIKLKYAVRGEELPR---GSKI 195
+ R+ + Q L L+PT ELAIQ E K+ + +K G+ + R +
Sbjct: 65 VERLVPGQRAVQALVLTPTRELAIQVAEEITKIGRHA-RVKTIAIYGGQSIERQIRSLRF 123
Query: 196 TDHILIGTPGKMFDWGVKFGMFDMGKIKVFVLDEADVMINRQGHQDQCIRIHKCLPSTCQ 255
++IGTPG++ D + D+ ++++ VLDEAD M++ G + +I + P+ Q
Sbjct: 124 GVDVVIGTPGRILDH-LGRSTLDLSQVRMVVLDEADEMLD-MGFIEDIEKILQNTPAERQ 181
Query: 256 MMFFSATYGTAVMQFAEIIVSNPIIIRLLREEESLDNIKQYYVKCKSAEDKYRAICNIYG 315
+ FSAT + + A + +PI I + ++ ++ I QY+ + + + K A+ I
Sbjct: 182 TLLFSATMPPEIRRLAGRYMRDPITISVTPQQLTVPQIDQYFCEVRPSF-KTEALTRILD 240
Query: 316 VITIGQAIIFCHTRKTASWLSEKMSKDGHSVAVLSGELTVEQRIAVLDRFRVGLEKVLIT 375
+ + + I FC T+K L E + G+ + G++ QR V+ RF+ G ++L+
Sbjct: 241 IENVERGICFCRTKKGVDELVEALQARGYQAEGIHGDMNQAQRNRVMSRFKEGYIELLVA 300
Query: 376 TNVLSRGIDVEQVTLVVNFDMPMDMNRKADCETYLHRIGRTGRFGKAGIAINLI 429
T+V +RG+D+ VT V N+D+P D E+Y+HRIGRTGR G+ G AI L+
Sbjct: 301 TDVAARGLDISDVTHVFNYDIPQDP------ESYVHRIGRTGRAGRTGTAITLV 348
>UniRef50_A0V009 Cluster: DEAD/DEAH box helicase-like; n=1;
Clostridium cellulolyticum H10|Rep: DEAD/DEAH box
helicase-like - Clostridium cellulolyticum H10
Length = 542
Score = 194 bits (473), Expect = 4e-48
Identities = 124/389 (31%), Positives = 208/389 (53%), Gaps = 20/389 (5%)
Query: 79 TFEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMIAQSQSGTGKTAAFVLAM 138
TF L + +LK + MGF P+++Q A+P +L + +++I S++G+GKTA F +++
Sbjct: 4 TFNELGISAPILKAIDDMGFKTPTEVQSKAIPHILNN--EDLIVMSKTGSGKTAVFGVSI 61
Query: 139 LSRVDSNKNYPQVLCLSPTYELAIQTGEVAAKMAKFCPEIKLKY-AVRGEE-LPRGSKIT 196
L + + PQ L L+P ELA+Q KMAK+ +K K A+ G+ + ++I
Sbjct: 62 LQLTNPEEAGPQGLILTPARELAVQVDNDIRKMAKY---LKHKTTAIYGQHNINLETQIL 118
Query: 197 DH---ILIGTPGKMFDWGVKFGMFDMGKIKVFVLDEADVMINRQGHQDQCIRIHKCLPST 253
+ I+ GTPG++FD + G I+ VLDEAD M++ G DQ +RI K LP
Sbjct: 119 NKGVSIVTGTPGRVFDH-ISHGTLSTKNIRFLVLDEADRMLD-MGFLDQVVRIVKTLPKE 176
Query: 254 CQMMFFSATYGTAVMQFAEIIVSNPIIIRLLREEESLDNIKQYYVKCKSAEDKYRAICNI 313
+ FSAT + + ++NP+ I + + +++D I Q Y + E K + +
Sbjct: 177 RITLLFSATMPPEIHNICKRYMNNPVTIEIESQTKTVDTIHQVYYRVNYNE-KNTQLNRL 235
Query: 314 YGVITIGQAIIFCHTRKTASWLSEKMSKDGHSVAVLSGELTVEQRIAVLDRFRVGLEKVL 373
V +IFC+T+ + + K G+S L G++ +R+ + +F+ G +L
Sbjct: 236 LIVEKPESCMIFCNTKAAVDRVQSFLGKKGYSSRALHGDIPQSKRLNTIQQFKQGKFHIL 295
Query: 374 ITTNVLSRGIDVEQVTLVVNFDMPMDMNRKADCETYLHRIGRTGRFGKAGIAINLIDSPQ 433
+ T+V +RGI +E ++LV+N+D+P D + Y+HRIGRTGR G G A +L+
Sbjct: 296 VATDVAARGIHIEDLSLVINYDVPNDK------DNYVHRIGRTGRAGHEGRAFSLVTGDD 349
Query: 434 AMEICTDIEAHFGKKIQLLDIEDAEEIEK 462
+ + +IE H G I ++ D E K
Sbjct: 350 IISL-YEIEEHIGTLILEEELPDEEAFTK 377
>UniRef50_Q8YXJ0 Cluster: ATP-dependent RNA helicase; n=11;
Cyanobacteria|Rep: ATP-dependent RNA helicase - Anabaena
sp. (strain PCC 7120)
Length = 513
Score = 194 bits (472), Expect = 5e-48
Identities = 131/388 (33%), Positives = 208/388 (53%), Gaps = 19/388 (4%)
Query: 79 TFEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMIAQSQSGTGKTAAFVLAM 138
+F L + ++ + +GF AP+ IQ A+P LL+ ++++ QSQ+GTGKTAAF L +
Sbjct: 4 SFPELGISQERVEHLEKLGFTAPTNIQAQAIPQLLSG--RDVVGQSQTGTGKTAAFSLPI 61
Query: 139 LSRVDSNKNYPQVLCLSPTYELAIQTGEVAAKMAKFCPEIKLKYAV--RGEELPRGS--- 193
L R+D + Q + L+PT ELAIQ + MA+F L+ G+ + R
Sbjct: 62 LERLDPQQKAVQAIVLTPTRELAIQVHDA---MAQFVGNSGLRTLAIYGGQSIDRQMLQL 118
Query: 194 KITDHILIGTPGKMFDWGVKFGMFDMGKIKVFVLDEADVMINRQGHQDQCIRIHKCLPST 253
K HI++GTPG++ D ++ G + ++K FVLDEAD M++ G D +I P
Sbjct: 119 KRGVHIVVGTPGRVIDL-LERGNLKLDQVKWFVLDEADEMLS-MGFIDDVEKILSQAPQD 176
Query: 254 CQMMFFSATYGTAVMQFAEIIVSNPIIIRLLREEESLDNIKQYYVKCKSAEDKYRAICNI 313
Q FSAT ++ + +P+ + + + + + + I Q K RA+ I
Sbjct: 177 RQTALFSATMPPSIRMLVNKFLRSPVTVTVEQPKATPNKINQVAYLIPRHWTKARALQPI 236
Query: 314 YGVITIGQAIIFCHTRKTASWLSEKMSKDGHSVAVLSGELTVEQRIAVLDRFRVGLEKVL 373
+ A+IF TR+TA+ L+ ++ GHSV G+L+ + R +L RFR + +
Sbjct: 237 LEMEDPETALIFVRTRRTAAELTSQLQAAGHSVDEYHGDLSQQARERLLTRFRSRQVRWV 296
Query: 374 ITTNVLSRGIDVEQVTLVVNFDMPMDMNRKADCETYLHRIGRTGRFGKAGIAINLIDSPQ 433
+ T++ +RG+DV+Q++ V+N+D+P + ETY+HRIGRTGR GK G AI L+ P
Sbjct: 297 VATDIAARGLDVDQLSHVINYDLPDSV------ETYVHRIGRTGRAGKEGTAITLV-QPF 349
Query: 434 AMEICTDIEAHFGKKIQLLDIEDAEEIE 461
E H + QLL I +IE
Sbjct: 350 ERRKQQIFERHVRQNWQLLSIPTRAQIE 377
>UniRef50_Q7UNV7 Cluster: ATP-dependent RNA helicase; n=2;
Planctomycetaceae|Rep: ATP-dependent RNA helicase -
Rhodopirellula baltica
Length = 452
Score = 194 bits (472), Expect = 5e-48
Identities = 125/375 (33%), Positives = 204/375 (54%), Gaps = 19/375 (5%)
Query: 79 TFEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMIAQSQSGTGKTAAFVLAM 138
+F+ L L P + + V GF PS IQ +P L +++I Q+++GTGKTAAF + +
Sbjct: 45 SFDELDLSPIMRRAVKDAGFTTPSPIQAALIPHALNG--KDVIGQARTGTGKTAAFSIPI 102
Query: 139 LSRVDSNKNY--PQVLCLSPTYELAIQTGEVAAKMAKFCPEIKLKYAVRGEELPRGSKIT 196
L ++DS ++ PQ + + PT ELA Q A ++A+ P ++ G+ + R +
Sbjct: 103 LEQLDSLEDCRDPQAIVIVPTRELADQVAAEAERLARGVPT-EIAVLSGGKNMNRQLRQL 161
Query: 197 DH---ILIGTPGKMFDWGVKFGMFDMGKIKVFVLDEADVMINRQGHQDQCIRIHKCLPST 253
++ +++GTPG++ D ++ G + VLDEAD M++ G + Q RI + P
Sbjct: 162 ENGTQLVVGTPGRVHDH-LQRGTLRTNNVWCVVLDEADRMLDI-GFRPQIERIMRKCPRN 219
Query: 254 CQMMFFSATYGTAVMQFAEIIVSNPIIIRLLREEESLDNIKQYYVKCKSAEDKYRAICNI 313
Q + SAT V + AE + P++I R+E ++D I+Q Y + +DK R + ++
Sbjct: 220 RQTLLLSATLPPVVRRLAESYMHEPVVIDCCRDEMAVDTIEQRYFTI-AQDDKVRLLESL 278
Query: 314 YGVITIGQAIIFCHTRKTASWLSEKMSKD-GHSVAVLSGELTVEQRIAVLDRFRVGLEKV 372
QAIIFC T++ L K+S + G + + G+L +R VL + R G K
Sbjct: 279 LKREKPEQAIIFCRTKRGTDRLHRKLSHEYGSACGAIHGDLQQRERDRVLQKLRDGNLKF 338
Query: 373 LITTNVLSRGIDVEQVTLVVNFDMPMDMNRKADCETYLHRIGRTGRFGKAGIAINLIDSP 432
L+ T+V+ RGID+ ++ +VNFD+P DC+ Y+HR+GRTGR G+ G+A + P
Sbjct: 339 LVATDVVGRGIDISTISHIVNFDVPQ------DCDDYVHRVGRTGRMGRDGVAYTFV-VP 391
Query: 433 QAMEICTDIEAHFGK 447
+I T IE K
Sbjct: 392 GEGDILTSIEQRINK 406
>UniRef50_Q3AFI3 Cluster: ATP-dependent RNA helicase, DEAD box
family; n=1; Carboxydothermus hydrogenoformans
Z-2901|Rep: ATP-dependent RNA helicase, DEAD box family
- Carboxydothermus hydrogenoformans (strain Z-2901 / DSM
6008)
Length = 430
Score = 194 bits (472), Expect = 5e-48
Identities = 120/389 (30%), Positives = 214/389 (55%), Gaps = 17/389 (4%)
Query: 77 VKTFEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMIAQSQSGTGKTAAFVL 136
++ F+ L L LLK V +GF P+ IQ+ A+P +L N++ Q+ +GTGKTAA++L
Sbjct: 1 MEEFKKLGLITPLLKAVNDLGFEMPTPIQKEAIPLILEG--HNLVGQAPTGTGKTAAYLL 58
Query: 137 AMLSRVDSNKNYPQVLCLSPTYELAIQTGEVAAKMAKFCPEIKLKYAVRGEELPR---GS 193
+L R+ K QVL ++PT ELA+Q + AK+ K+ +++ G+ + R G
Sbjct: 59 PVLQRIQRGKK-AQVLIVTPTRELALQVADEVAKLGKYL-KVRALAVYGGQAIERQIRGL 116
Query: 194 KITDHILIGTPGKMFDWGVKFGMFDMGKIKVFVLDEADVMINRQGHQDQCIRIHKCLPST 253
+ +++GTPG++ D + F +IK+ +LDEAD M++ G D I L +
Sbjct: 117 RQGVEVIVGTPGRILDH-IGRKTFPAAEIKIVILDEADEMLD-MGFIDDIEAILNTLTNR 174
Query: 254 CQMMFFSATYGTAVMQFAEIIVSNPIIIRLLREEESLDNIKQYYVKCKSAEDKYRAICNI 313
Q + FSAT + + + ++L+ E+++ I+Q Y + E K + +I
Sbjct: 175 QQTLLFSATLPAPIKTIIKKFLGGYKTVKLVGREKTVPAIRQVYYELPETE-KIEGLVSI 233
Query: 314 YGVITIGQAIIFCHTRKTASWLSEKMSKDGHSVAVLSGELTVEQRIAVLDRFRVGLEKVL 373
QAI+FC T+K + E+++ G++ L G+++ +R + F+ G ++L
Sbjct: 234 LNSELPIQAIVFCRTKKRVDEVVEQLNFRGYAAKGLHGDMSQRERTQTIKSFKAGKTELL 293
Query: 374 ITTNVLSRGIDVEQVTLVVNFDMPMDMNRKADCETYLHRIGRTGRFGKAGIAINLIDSPQ 433
+ T+V +RG+D+ V+ V+NFD+P + E+Y+HRIGRTGR G+ G AI LI+ +
Sbjct: 294 VATDVAARGLDIPDVSHVINFDIPQNP------ESYIHRIGRTGRAGREGKAITLINY-R 346
Query: 434 AMEICTDIEAHFGKKIQLLDIEDAEEIEK 462
++ IE K+++ + + ++E+
Sbjct: 347 ERKLLKAIEEAINKRLKREILPEPVDLEE 375
>UniRef50_Q4IZ16 Cluster: DEAD/DEAH box helicase:Helicase,
C-terminal:DbpA RNA binding domain; n=18;
Pseudomonadaceae|Rep: DEAD/DEAH box helicase:Helicase,
C-terminal:DbpA RNA binding domain - Azotobacter
vinelandii AvOP
Length = 575
Score = 194 bits (472), Expect = 5e-48
Identities = 125/384 (32%), Positives = 206/384 (53%), Gaps = 15/384 (3%)
Query: 80 FEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMIAQSQSGTGKTAAFVLAML 139
F AL + P +L + A+G+ PS IQ A+P +LA +MI Q+Q+GTGKTAAF L ML
Sbjct: 25 FAALGIHPAVLAAITAVGYEEPSPIQAQAIPVILAG--HDMIGQAQTGTGKTAAFALPML 82
Query: 140 SRVDSNKNYPQVLCLSPTYELAIQTGEVAAKMAKFCPEIKLKYAVRGEEL-PRGSKITD- 197
SR+D + PQ+L L+PT ELA+Q A P + + G + P+ +
Sbjct: 83 SRIDPARREPQLLILAPTRELALQVATAFETYASQLPGVGVVAVYGGAPMGPQLKALRQG 142
Query: 198 -HILIGTPGKMFDWGVKFGMFDMGKIKVFVLDEADVMINRQGHQDQCIRIHKCLPSTCQM 256
IL+ TPG++ D ++ + +K VLDEAD M+ + G + I LP + Q
Sbjct: 143 AQILVATPGRLCD-HLRRDEQLLSTVKHLVLDEADEML-KLGFMEDLEVIFAALPESRQT 200
Query: 257 MFFSATYGTAVMQFAEIIVSNPIIIRLLREEESLDNIKQYYVKCKSAEDKYRAICNIYGV 316
+ FSAT ++ + AE + P +++ + +++ I Q ++ A+ K A+ + V
Sbjct: 201 VLFSATLPHSIREIAEKHLHEPQHVKIAAKTQTVARIDQAHLMV-HADQKTAAVLRLLEV 259
Query: 317 ITIGQAIIFCHTRKTASWLSEKMSKDGHSVAVLSGELTVEQRIAVLDRFRVGLEKVLITT 376
I F T++ L+ + G+ A L+G++ QR V++ + G +++ T
Sbjct: 260 EEFDALIAFVRTKQATLDLAGALEAKGYKAAALNGDIAQNQRERVIESLKDGRLDIVVAT 319
Query: 377 NVLSRGIDVEQVTLVVNFDMPMDMNRKADCETYLHRIGRTGRFGKAGIAINLIDSPQAME 436
+V +RGIDV ++T V N DMP D E+Y+HRIGRTGR G+ G A+ L+ +P+
Sbjct: 320 DVAARGIDVPRITHVFNVDMPYDP------ESYVHRIGRTGRAGRDGRALLLV-TPRERR 372
Query: 437 ICTDIEAHFGKKIQLLDIEDAEEI 460
+ IE G+K+ + + A+++
Sbjct: 373 MLQVIERVTGQKVAEVHLPGAQQV 396
>UniRef50_A6TTG0 Cluster: DEAD/DEAH box helicase domain protein;
n=3; Clostridiaceae|Rep: DEAD/DEAH box helicase domain
protein - Alkaliphilus metalliredigens QYMF
Length = 549
Score = 193 bits (471), Expect = 7e-48
Identities = 123/341 (36%), Positives = 196/341 (57%), Gaps = 17/341 (4%)
Query: 101 PSKIQETALPTLLADPPQNMIAQSQSGTGKTAAFVLAMLSRVDSNKNYPQVLCLSPTYEL 160
P+ +Q A+P LLA ++++AQ+Q+GTGKT AF+L +L RV+ K Q L ++PT EL
Sbjct: 26 PTPVQLQAIPPLLAQ--RDVMAQAQTGTGKTLAFILPILERVNVEKPTIQALIITPTREL 83
Query: 161 AIQTGEVAAKMAKFCPEIKLKYAVRGEELP---RGSKITDHILIGTPGKMFDWGVKFGMF 217
AIQ K+A+ I + A G+++ R K + HI+IGTPG++ D ++
Sbjct: 84 AIQITAETKKLAEV-KGINILAAYGGQDVEQQLRKLKGSIHIIIGTPGRLLDH-LRRKTI 141
Query: 218 DMGKIKVFVLDEADVMINRQGHQD-QCIRIHKCLPSTCQMMFFSATYGTAVMQFAEIIVS 276
++GK+ + VLDEAD M++ +D + I H +P Q MFFSAT V AE +
Sbjct: 142 NLGKLSMLVLDEADQMLHMGFLRDVEDIMTH--IPKRRQNMFFSATMPNQVRTLAEQYMK 199
Query: 277 NPIIIRLLREEESLDNIKQYYVKCKSAEDKYRAICNIYGVITIGQAIIFCHTRKTASWLS 336
+P+ I++ + +LD I+Q ++ K +C ++ AIIFC T++ A L+
Sbjct: 200 DPVQIQVQSKRVTLDEIRQVVIETTD-RGKQDLLCQLFDEYNPFMAIIFCRTKRRAIALN 258
Query: 337 EKMSKDGHSVAVLSGELTVEQRIAVLDRFRVGLEKVLITTNVLSRGIDVEQVTLVVNFDM 396
E + G++ L G+LT +R V+ F+ + L+ T+V +RG+D+E VT + N+D+
Sbjct: 259 EALINLGYNSDELHGDLTQAKREKVMKAFKKSKIQYLVATDVAARGLDIEGVTHIFNYDI 318
Query: 397 PMDMNRKADCETYLHRIGRTGRFGKAGIAINLIDSPQAMEI 437
P D E+Y+HRIGRTGR G+ G+AI + S E+
Sbjct: 319 PQ------DGESYIHRIGRTGRAGETGMAITFMTSRDRDEL 353
>UniRef50_P96614 Cluster: DEAD-box ATP-dependent RNA helicase ydbR;
n=90; Bacilli|Rep: DEAD-box ATP-dependent RNA helicase
ydbR - Bacillus subtilis
Length = 494
Score = 193 bits (471), Expect = 7e-48
Identities = 117/374 (31%), Positives = 209/374 (55%), Gaps = 16/374 (4%)
Query: 79 TFEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMIAQSQSGTGKTAAFVLAM 138
TF+ +L +L+K + MGF + IQ +P L++ +++I Q+Q+GTGKTAAF + +
Sbjct: 4 TFQDFNLSSDLMKAINRMGFEEATPIQAQTIPLGLSN--KDVIGQAQTGTGKTAAFGIPL 61
Query: 139 LSRVDSNKNYPQVLCLSPTYELAIQTGEVAAKMAKFCPEIKLKYAVRGEELPR---GSKI 195
+ +++ Q + ++PT ELAIQ E K+ + K+ G+++ R K
Sbjct: 62 VEKINPESPNIQAIVIAPTRELAIQVSEELYKIGQD-KRAKVLPIYGGQDIGRQIRALKK 120
Query: 196 TDHILIGTPGKMFDWGVKFGMFDMGKIKVFVLDEADVMINRQGHQDQCIRIHKCLPSTCQ 255
+I++GTPG++ D + + + V+DEAD M+N G D I +PS Q
Sbjct: 121 NPNIIVGTPGRLLDH-INRRTIRLNNVNTVVMDEADEMLN-MGFIDDIESILSNVPSEHQ 178
Query: 256 MMFFSATYGTAVMQFAEIIVSNPIIIRLLREEESLDNIKQYYVKCKSAEDKYRAICNIYG 315
+ FSAT + + AE ++ P +++ +E ++ NI+Q+Y++ + + K+ + +
Sbjct: 179 TLLFSATMPAPIKRIAERFMTEPEHVKVKAKEMTVSNIQQFYLEVQERK-KFDTLTRLLD 237
Query: 316 VITIGQAIIFCHTRKTASWLSEKMSKDGHSVAVLSGELTVEQRIAVLDRFRVGLEKVLIT 375
+ + AI+F T++ L+E ++ G++ + G+LT +R+ L +F+ G +VL+
Sbjct: 238 IQSPELAIVFGRTKRRVDELAEALNLRGYAAEGIHGDLTQAKRMVALRKFKEGAIEVLVA 297
Query: 376 TNVLSRGIDVEQVTLVVNFDMPMDMNRKADCETYLHRIGRTGRFGKAGIAINLIDSPQAM 435
T+V +RG+D+ VT V NFD+P D E+Y+HRIGRTGR GK G+A+ I +P+
Sbjct: 298 TDVAARGLDISGVTHVYNFDVPQDP------ESYVHRIGRTGRAGKTGMAMTFI-TPREK 350
Query: 436 EICTDIEAHFGKKI 449
+ IE +K+
Sbjct: 351 SMLRAIEQTTKRKM 364
>UniRef50_P0A9P8 Cluster: Cold-shock DEAD box protein A; n=54;
Gammaproteobacteria|Rep: Cold-shock DEAD box protein A -
Shigella flexneri
Length = 629
Score = 193 bits (471), Expect = 7e-48
Identities = 124/387 (32%), Positives = 202/387 (52%), Gaps = 15/387 (3%)
Query: 79 TFEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMIAQSQSGTGKTAAFVLAM 138
TF L LK +L+ + +G+ PS IQ +P LL ++++ +Q+G+GKTAAF L +
Sbjct: 7 TFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNG--RDVLGMAQTGSGKTAAFSLPL 64
Query: 139 LSRVDSNKNYPQVLCLSPTYELAIQTGEVAAKMAKFCPEIKLKYAVRGEELP---RGSKI 195
L +D PQ+L L+PT ELA+Q E +K + + G+ R +
Sbjct: 65 LQNLDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQ 124
Query: 196 TDHILIGTPGKMFDWGVKFGMFDMGKIKVFVLDEADVMINRQGHQDQCIRIHKCLPSTCQ 255
I++GTPG++ D +K G D+ K+ VLDEAD M+ R G + I +P Q
Sbjct: 125 GPQIVVGTPGRLLDH-LKRGTLDLSKLSGLVLDEADEML-RMGFIEDVETIMAQIPEGHQ 182
Query: 256 MMFFSATYGTAVMQFAEIIVSNPIIIRLLREEESLDNIKQYYVKCKSAEDKYRAICNIYG 315
FSAT A+ + + P +R+ + +I Q Y K A+
Sbjct: 183 TALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMR-KNEALVRFLE 241
Query: 316 VITIGQAIIFCHTRKTASWLSEKMSKDGHSVAVLSGELTVEQRIAVLDRFRVGLEKVLIT 375
AIIF T+ ++E + ++G++ A L+G++ R L+R + G +LI
Sbjct: 242 AEDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIA 301
Query: 376 TNVLSRGIDVEQVTLVVNFDMPMDMNRKADCETYLHRIGRTGRFGKAGIAINLIDSPQAM 435
T+V +RG+DVE+++LVVN+D+PM D E+Y+HRIGRTGR G+AG A+ +++ +
Sbjct: 302 TDVAARGLDVERISLVVNYDIPM------DSESYVHRIGRTGRAGRAGRALLFVEN-RER 354
Query: 436 EICTDIEAHFGKKIQLLDIEDAEEIEK 462
+ +IE I +++ +AE + K
Sbjct: 355 RLLRNIERTMKLTIPEVELPNAELLGK 381
>UniRef50_Q8EZ11 Cluster: ATP-dependent RNA helicase; n=4;
Leptospira|Rep: ATP-dependent RNA helicase - Leptospira
interrogans
Length = 521
Score = 193 bits (470), Expect = 1e-47
Identities = 126/386 (32%), Positives = 198/386 (51%), Gaps = 15/386 (3%)
Query: 80 FEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMIAQSQSGTGKTAAFVLAML 139
F L+L + + MGF S IQ A+P +L +++I +Q+GTGKTAAF + +
Sbjct: 11 FSELNLSAEIQNAILEMGFEEASPIQSEAIPVILKG--KDIIGHAQTGTGKTAAFAIPTI 68
Query: 140 SRVDSNKNYPQVLCLSPTYELAIQTGEVAAKMAKFCPEIKLKYAVRGEELPRGSKI---T 196
++ + Q L L PT EL IQ E K+ K+ ++ G+E+ R +
Sbjct: 69 ELLEVESKHLQALILCPTRELVIQVSEQFRKLIKYKGNFEVVPIYGGQEIERQLRALRKN 128
Query: 197 DHILIGTPGKMFDWGVKFGMFDMGKIKVFVLDEADVMINRQGHQDQCIRIHKCLPSTCQM 256
I+I TPG+M D ++ G + +IK+ VLDEAD M++ G ++ I K P+ Q
Sbjct: 129 PQIVIATPGRMMDH-MRRGSIHLDEIKIVVLDEADEMLD-MGFREDMEFILKDTPADRQT 186
Query: 257 MFFSATYGTAVMQFAEIIVSNPIIIRLLREEESLDNIKQYYVKCKSAEDKYRAICNIYGV 316
+ FSAT V+ + ++P II + ++ S I+Q Y + + K A+ +
Sbjct: 187 IMFSATMTDDVLTLMKKFQNHPQIIDVTHQKLSAPKIEQIYYEIQE-NAKGEALARLIEY 245
Query: 317 ITIGQAIIFCHTRKTASWLSEKMSKDGHSVAVLSGELTVEQRIAVLDRFRVGLEKVLITT 376
+ A++FC+T+ + E + G+ L G+L +QR V+ FR G ++L+ T
Sbjct: 246 RNVKLALVFCNTKAQVDTVVELLKSRGYFAEALHGDLNQKQRDKVMSGFRKGSIEILVAT 305
Query: 377 NVLSRGIDVEQVTLVVNFDMPMDMNRKADCETYLHRIGRTGRFGKAGIAINLIDSPQAME 436
+V RGIDV V V N+D+P D E Y+HRIGRTGR GK GIA + I Q
Sbjct: 306 DVAGRGIDVNNVEAVFNYDLP------RDGEDYVHRIGRTGRAGKKGIAFSFIVGKQIYN 359
Query: 437 ICTDIEAHFGKKIQLLDIEDAEEIEK 462
+ IE G KI+ I +++E+
Sbjct: 360 L-KKIERINGIKIEAGKIPTLDDLEE 384
>UniRef50_Q5QY63 Cluster: ATP-dependent RNA helicase; n=3;
Alteromonadales|Rep: ATP-dependent RNA helicase -
Idiomarina loihiensis
Length = 594
Score = 193 bits (470), Expect = 1e-47
Identities = 130/388 (33%), Positives = 210/388 (54%), Gaps = 17/388 (4%)
Query: 79 TFEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMIAQSQSGTGKTAAFVLAM 138
+F + L +L+ + AM F P+ IQ A+P LL Q+++ ++Q+GTGKTAAF L
Sbjct: 9 SFNDMALPSAVLEQLNAMQFLTPTPIQLQAIPALLEG--QDVLGEAQTGTGKTAAFGLPA 66
Query: 139 LSRVDSNKNYPQVLCLSPTYELAIQTGEV----AAKMAKFCPEIKLKYAVRGEELPRGSK 194
L+++D++ QVL ++PT ELAIQ E AAKM A G ++ + K
Sbjct: 67 LAKIDASVKQTQVLVVTPTRELAIQVAEALEGFAAKMRGVGVATVYGGAPFGPQV-KALK 125
Query: 195 ITDHILIGTPGKMFDWGVKFGMFDMGKIKVFVLDEADVMINRQGHQDQCIRIHKCLPSTC 254
I++GTPG++ D K + + +KV VLDEAD M+N G + I K +P+T
Sbjct: 126 QGTAIVVGTPGRLIDLLNK-NVLQLDGLKVGVLDEADEMLN-MGFIEDIETILKAVPNTA 183
Query: 255 QMMFFSATYGTAVMQFAEIIVSNPIIIRLLREEESLDNIKQYYVKCKSAEDKYRAICNIY 314
Q FSAT A+ + A+ + +P+ I++ IKQ K + K A+ +
Sbjct: 184 QRALFSATMPNAIRKLAKTFLKDPLNIQIEAIAREKATIKQKAWKVQGMT-KMTALTRLL 242
Query: 315 GVITIGQAIIFCHTRKTASWLSEKMSKDGHSVAVLSGELTVEQRIAVLDRFRVGLEKVLI 374
V +A+IF TR+ ++E + ++G A LSG+L QR + + R G ++L+
Sbjct: 243 EVTPYQRALIFVRTRQDTMDVAELLQRNGFKAAPLSGDLNQAQREQTVSQLRSGHIEILV 302
Query: 375 TTNVLSRGIDVEQVTLVVNFDMPMDMNRKADCETYLHRIGRTGRFGKAGIAINLIDSPQA 434
T+V++RG+DV ++T V+N+D+P +D E+Y+HRIGRTGR G+ G AI L +
Sbjct: 303 GTDVVARGLDVPEITHVINYDLP------SDTESYVHRIGRTGRAGRTGEAI-LFFRAKE 355
Query: 435 MEICTDIEAHFGKKIQLLDIEDAEEIEK 462
+ E ++ ++ +A E+ K
Sbjct: 356 RHLLRHYERLTNAPVEFFEVPNANELSK 383
>UniRef50_Q1FMF9 Cluster: Helicase-like:DbpA, RNA-binding:DEAD/DEAH
box helicase-like; n=1; Clostridium phytofermentans
ISDg|Rep: Helicase-like:DbpA, RNA-binding:DEAD/DEAH box
helicase-like - Clostridium phytofermentans ISDg
Length = 483
Score = 193 bits (470), Expect = 1e-47
Identities = 125/387 (32%), Positives = 207/387 (53%), Gaps = 18/387 (4%)
Query: 80 FEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMIAQSQSGTGKTAAFVLAML 139
F L +++ + + + P+ IQE +P LA +++IA+S++G+GKTAAF + +
Sbjct: 6 FTQYKLCEEIIQALSMLHYIEPTPIQEKVIP--LALEGKDIIAKSKTGSGKTAAFAIPIC 63
Query: 140 SRVDSNKNYPQVLCLSPTYELAIQTGEVAAKMAKFCPEIKLKYAVRGEELPRGS---KIT 196
+ +N PQ L L PT ELA Q + + + +K+ G + + K
Sbjct: 64 ESIVWEENLPQALVLEPTRELAYQVKDEIFNVGRM-KRVKVPVVFGGFPFDKQALTLKQK 122
Query: 197 DHILIGTPGKMFDWGVKFGMFDMGKIKVFVLDEADVMINRQGHQDQCIRIHKCLPSTCQM 256
HI++GTPG++ D + G +K ++DEAD+M++ G D RI LP +
Sbjct: 123 SHIVVGTPGRVLDH-CETGTLKCSNVKYVIIDEADLMLD-MGFLDDVKRILSYLPENITI 180
Query: 257 MFFSATYGTAVMQFAEIIVSNPIIIRLLREEESLDNIKQYYVKC-KSAEDKYRAICNIYG 315
M FSAT G A+ + +++P+ ++L E++D+I+Q + C + EDKY +
Sbjct: 181 MLFSATMGEALYALTDEFMNSPVEVKLEDGTETVDSIEQ--LGCFVTEEDKYELFLRMLY 238
Query: 316 VITIGQAIIFCHTRKTASWLSEKMSKDGHSVAVLSGELTVEQRIAVLDRFRVGLEKVLIT 375
A+IFC TR+ L K+ K+ +L G + +QRI +D FR G + LI
Sbjct: 239 KNNPTNAMIFCGTREMVEVLYYKLKKEKVWCGMLHGLIDQKQRIHTIDDFRTGGFRYLIA 298
Query: 376 TNVLSRGIDVEQVTLVVNFDMPMDMNRKADCETYLHRIGRTGRFGKAGIAINLIDSPQAM 435
T+V +RG+D + +T V+N+D+PM ETY+HRIGRTGR GK+G AI+ I +
Sbjct: 299 TDVAARGVDFDDITHVINYDLPMSK------ETYVHRIGRTGRNGKSGKAISFI-REEEK 351
Query: 436 EICTDIEAHFGKKIQLLDIEDAEEIEK 462
++ + IE G I+++ EE+ +
Sbjct: 352 KMLSLIEKFTGTPIEIVTPPSEEEVRE 378
>UniRef50_Q185X0 Cluster: ATP-dependent RNA helicase; n=3;
Clostridium difficile|Rep: ATP-dependent RNA helicase -
Clostridium difficile (strain 630)
Length = 497
Score = 192 bits (468), Expect = 2e-47
Identities = 124/388 (31%), Positives = 208/388 (53%), Gaps = 23/388 (5%)
Query: 79 TFEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMIAQSQSGTGKTAAFVLAM 138
TFE L +LK + ++G+N PS++Q +P LL QN++ +S++G+GKTA+F + +
Sbjct: 4 TFEKFKLNEKILKSLKSLGYNIPSRVQREVIPKLLKG--QNLVVRSKTGSGKTASFAIPL 61
Query: 139 LSRVDSNKNYPQVLCLSPTYELAIQTGEVAAKMAKF----CPEIKLKYAVRGEELPRGSK 194
++ + N Q L + PT ELA+Q + + + + C I K +++ + +
Sbjct: 62 CENINVDYNNIQALIVVPTRELALQVKDEISDIGRLKKVRCSAIFGKQSIKDQIAELKQR 121
Query: 195 ITDHILIGTPGKMFDWGVKFGMFDMGKIKVFVLDEADVMINRQGHQDQCIRIHKCLPSTC 254
+ HI++ TPG++ D + G + +K V+DEAD M N+ G +Q +I LP
Sbjct: 122 V--HIVVATPGRILDH-INRGSIKLENVKYLVIDEADKMFNK-GFVEQMEKILLNLPKEK 177
Query: 255 QMMFFSATYGTAVMQFAEIIVSNPIIIRLLREEESLDNIKQYYVKCK----SAEDKYRAI 310
+ FSAT + E + + +I + E ES N K + K + +KY +
Sbjct: 178 IVSLFSATIDEEIKYICEKYMLDYSVINI-EENESDTNQKTRQIDDKIIKANGREKYILL 236
Query: 311 CNIYGVITIGQAIIFCHTRKTASWLSEKMSKDGHSVAVLSGELTVEQRIAVLDRFRVGLE 370
+ IIFC+T++ S L KMSK+G + L +L+ E+RI V+ F+
Sbjct: 237 KELIYSENPKSVIIFCNTKEKVSKLYNKMSKEGFLIRELHADLSQERRIFVIKDFKNQKF 296
Query: 371 KVLITTNVLSRGIDVEQVTLVVNFDMPMDMNRKADCETYLHRIGRTGRFGKAGIAINLID 430
+L++++V SRGI ++ ++LV+N+D+P D E Y+HRIGRTGR G +G AI ++
Sbjct: 297 NILVSSDVASRGIHIDDISLVINYDVPQDK------ENYIHRIGRTGRKGNSGKAITIVT 350
Query: 431 SPQAMEICTDIEAHFGKKI-QLLDIEDA 457
I +IE + G KI +L DIE +
Sbjct: 351 EKDEKYI-ENIETYIGYKINELTDIEQS 377
>UniRef50_A6DK15 Cluster: ATP-dependent RNA helicase, specific for
23S rRNA; n=1; Lentisphaera araneosa HTCC2155|Rep:
ATP-dependent RNA helicase, specific for 23S rRNA -
Lentisphaera araneosa HTCC2155
Length = 462
Score = 191 bits (465), Expect = 4e-47
Identities = 124/391 (31%), Positives = 209/391 (53%), Gaps = 14/391 (3%)
Query: 76 SVKTFEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMIAQSQSGTGKTAAFV 135
S K F +L L +L+K V ++G+ ++IQE +LP +L +++IAQ+++GTGKTAAF
Sbjct: 2 SSKDFASLPLSEDLIKNVASLGYEEMTEIQELSLPAILDG--KDLIAQAKTGTGKTAAFG 59
Query: 136 LAMLSRVDSNKNYPQVLCLSPTYELAIQTGEVAAKMAKFCPEIKLKYAVRGEEL-PRGSK 194
L +LS++ + QVL L PT EL Q + +A+ P IKL G P+
Sbjct: 60 LGVLSKLVLDDYRIQVLILCPTRELCEQVSKAIRDLARMMPNIKLLSLGGGMPFRPQMKS 119
Query: 195 ITD--HILIGTPGKMFDWGVKFGMFDMGKIKVFVLDEADVMINRQGHQDQCIRIHKCLPS 252
+ HI++GTPG++ K + + ++ VLDEAD M++ G QD+ I
Sbjct: 120 VAHGAHIVVGTPGRILKHLNKSSL-SLDHVRTLVLDEADRMLD-MGFQDEIDAIIDQTNK 177
Query: 253 TCQMMFFSATYGTAVMQFAEIIVSNPIIIRLLREEESLDNIKQYYVKCKSAEDKYRAICN 312
Q + FSATY + A+ ++ +P+ I L + I+Q++ K S + +
Sbjct: 178 QRQTLLFSATYPKKIATIAKRVMKDPLRIELDSQVHEESTIEQHFYKVTSESQRLLGLQL 237
Query: 313 IYGVITIGQAIIFCHTRKTASWLSEKMSKDGHSVAVLSGELTVEQRIAVLDRFRVGLEKV 372
+ A++FC+T++ A + + +SK G S L G+L + R L RF V
Sbjct: 238 LLDKFKSESAVVFCNTKQEAKDICKDLSKVGFSTLALHGDLEQKDRQENLVRFANKSVAV 297
Query: 373 LITTNVLSRGIDVEQVTLVVNFDMPMDMNRKADCETYLHRIGRTGRFGKAGIAINLIDSP 432
L+ T+V +RG+D++ + LV+N+ + D E ++HRIGRTGR GK GIA +L
Sbjct: 298 LVATDVAARGLDIDSIDLVINYHISRDF------EVHVHRIGRTGRAGKNGIACSLHSQK 351
Query: 433 QAMEICTDIEAHFGKKIQLLDIEDAEEIEKI 463
+A +I ++ G++I+ + D ++++
Sbjct: 352 EAHKISL-LQEFLGQEIESETLPDRSVLKEL 381
>UniRef50_O00148 Cluster: ATP-dependent RNA helicase DDX39; n=27;
Eukaryota|Rep: ATP-dependent RNA helicase DDX39 - Homo
sapiens (Human)
Length = 427
Score = 190 bits (462), Expect = 9e-47
Identities = 112/386 (29%), Positives = 196/386 (50%), Gaps = 17/386 (4%)
Query: 67 RKDPNSPLYSVKT--FEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMIAQS 124
+KD S+ + F LKP LL+ + GF PS++Q +P + +++ Q+
Sbjct: 31 KKDIKGSYVSIHSSGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILG--MDVLCQA 88
Query: 125 QSGTGKTAAFVLAMLSRVDSNKNYPQVLCLSPTYELAIQTGEVAAKMAKFCPEIKLKYAV 184
+SG GKTA FVLA L +++ VL + T ELA Q + + +K+ P +K+
Sbjct: 89 KSGMGKTAVFVLATLQQIEPVNGQVTVLVMCHTRELAFQISKEYERFSKYMPSVKVSVFF 148
Query: 185 RGEELPRGSKITD----HILIGTPGKMFDWGVKFGMFDMGKIKVFVLDEADVMINRQGHQ 240
G + + ++ H+++GTPG++ V+ F + +K FVLDE D M+ + +
Sbjct: 149 GGLSIKKDEEVLKKNCPHVVVGTPGRILAL-VRNRSFSLKNVKHFVLDECDKMLEQLDMR 207
Query: 241 DQCIRIHKCLPSTCQMMFFSATYGTAVMQFAEIIVSNPIIIRLLREEE-SLDNIKQYYVK 299
I + P Q M FSAT + + +P+ + + E + +L ++QYYVK
Sbjct: 208 RDVQEIFRLTPHEKQCMMFSATLSKDIRPVCRKFMQDPMEVFVDDETKLTLHGLQQYYVK 267
Query: 300 CKSAEDKYRAICNIYGVITIGQAIIFCHTRKTASWLSEKMSKDGHSVAVLSGELTVEQRI 359
K +E K R + ++ V+ Q IIF + + L++ + + + + E+R+
Sbjct: 268 LKDSE-KNRKLFDLLDVLEFNQVIIFVKSVQRCMALAQLLVEQNFPAIAIHRGMAQEERL 326
Query: 360 AVLDRFRVGLEKVLITTNVLSRGIDVEQVTLVVNFDMPMDMNRKADCETYLHRIGRTGRF 419
+ +F+ ++L+ TN+ RG+D+E+V +V N+DMP D +TYLHR+ R GRF
Sbjct: 327 SRYQQFKDFQRRILVATNLFGRGMDIERVNIVFNYDMP------EDSDTYLHRVARAGRF 380
Query: 420 GKAGIAINLIDSPQAMEICTDIEAHF 445
G G+AI + +I D++ F
Sbjct: 381 GTKGLAITFVSDENDAKILNDVQDRF 406
>UniRef50_Q6YPL1 Cluster: Superfamily II DNA and RNA helicase; n=3;
Candidatus Phytoplasma|Rep: Superfamily II DNA and RNA
helicase - Onion yellows phytoplasma
Length = 552
Score = 189 bits (460), Expect = 2e-46
Identities = 119/385 (30%), Positives = 201/385 (52%), Gaps = 15/385 (3%)
Query: 80 FEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMIAQSQSGTGKTAAFVLAML 139
FE L + K + + F + IQ +P ++ ++I Q+Q+GTGKT AF + ++
Sbjct: 5 FEQLPILEQTKKALKELNFIDATPIQALVIPEIIKG--HDVIGQAQTGTGKTFAFGIPII 62
Query: 140 SRVDSNKNYPQVLCLSPTYELAIQTGEVAAKMAKFCPEIKLKYAVRGEELP---RGSKIT 196
+++ Q L L PT EL +Q E K+ +F EI++ GE R +
Sbjct: 63 EKIEPKIQKTQSLILCPTRELTLQVYEELKKLLRFYQEIRIAVVYGGESYTKQFRALEAK 122
Query: 197 DHILIGTPGKMFDWGVKFGMFDMGKIKVFVLDEADVMINRQGHQDQCIRIHKCLPSTCQM 256
H++I TPG+ D ++ G D+ +K+ LDEAD M+ + G Q+ I K +P Q
Sbjct: 123 PHLIIATPGRAIDH-LERGKIDLSALKILTLDEADEML-KMGFQEALETILKKIPEERQT 180
Query: 257 MFFSATYGTAVMQFAEIIVSNPIIIRLLREEESLDNIKQYYVKCKSAEDKYRAICNIYGV 316
+ FSAT + + A + I+++ + +++ I+Q Y K DK + + + +
Sbjct: 181 VLFSATLPPFIKKIASKYQKDTKILQVPVKNIAVNAIEQNYFLVKEV-DKAKLLVRLLDL 239
Query: 317 ITIGQAIIFCHTRKTASWLSEKMSKDGHSVAVLSGELTVEQRIAVLDRFRVGLEKVLITT 376
AI+F +T+K ++ + G + G+L QR V++ FR G K+LI T
Sbjct: 240 KKDYSAILFANTKKDVDEITAYLQDKGFLADAVHGDLKQNQRQYVMNNFRKGKIKILIAT 299
Query: 377 NVLSRGIDVEQVTLVVNFDMPMDMNRKADCETYLHRIGRTGRFGKAGIAINLIDSPQAME 436
+V +RG+D+ + +V+N+D+P + E Y+HRIGRTGR GK G+A +LI SP+ +
Sbjct: 300 DVAARGLDISDIKMVINYDLP------HEDEVYVHRIGRTGRAGKKGLAYSLI-SPRKVS 352
Query: 437 ICTDIEAHFGKKIQLLDIEDAEEIE 461
+E + +KI LLDI + I+
Sbjct: 353 QLKKLEYYLKEKITLLDIPSVQSIK 377
>UniRef50_O83749 Cluster: ATP-dependent RNA helicase; n=2;
Treponema|Rep: ATP-dependent RNA helicase - Treponema
pallidum
Length = 649
Score = 188 bits (459), Expect = 2e-46
Identities = 117/353 (33%), Positives = 188/353 (53%), Gaps = 12/353 (3%)
Query: 79 TFEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMIAQSQSGTGKTAAFVLAM 138
+FE L L L V GF P+ IQ A+P LLA N+IA++++GTGKTAAF L +
Sbjct: 47 SFEELGLNEQSLAAVRLKGFRCPTPIQAAAIPRLLAGDA-NIIAKARTGTGKTAAFGLPL 105
Query: 139 LSRVDSNKNYPQVLCLSPTYELAIQTG-EVAAKMAKFCPEIKLKYA-VRGEELPRGSKIT 196
+ + S +P L L PT ELA Q E+++ + P I Y V E R +
Sbjct: 106 IQELGSPCEHPGALVLVPTRELAAQVASELSSLRIQKIPRIHTVYGGVSIAEQLRNLEQG 165
Query: 197 DHILIGTPGKMFDWGVKFGMFDMGKIKVFVLDEADVMINRQGHQDQCIRIHKCLPSTCQM 256
I++GT G++ D ++ G ++ ++ F+LDEAD M+N G + I ++
Sbjct: 166 GEIIVGTTGRVIDH-IERGSLELSYLRYFILDEADEMLN-MGFVEDIESIFSHANKDARV 223
Query: 257 MFFSATYGTAVMQFAEIIVSNPIIIRLLREEESLDNIKQYYVKCKSAEDKYRAICNIYGV 316
+ FSAT ++ A + + ++ + EE+ I+Q+ + A DK A+ + V
Sbjct: 224 LMFSATMPRQILSIASTFMGSYEVVEEVTPEEARPLIEQFMWVVRDA-DKIEALVRLIDV 282
Query: 317 ITIGQAIIFCHTRKTASWLSEKMSKDGHSVAVLSGELTVEQRIAVLDRFRVGLEKVLITT 376
++FC T+ A +++ + + + VA L G++ QR +L+RFR ++L+ T
Sbjct: 283 SDNFYGLVFCQTKADADTVAKSLDERHYHVAALHGDIPQSQREKILERFRTKRARILVAT 342
Query: 377 NVLSRGIDVEQVTLVVNFDMPMDMNRKADCETYLHRIGRTGRFGKAGIAINLI 429
+V +RGID+E +T VVN+ +P D TY HR+GRTGR G GIAI+ +
Sbjct: 343 DVAARGIDIEGITHVVNYSIP------HDSATYTHRVGRTGRAGSQGIAISFV 389
>UniRef50_P42305 Cluster: ATP-dependent RNA helicase dbpA; n=9;
Firmicutes|Rep: ATP-dependent RNA helicase dbpA -
Bacillus subtilis
Length = 479
Score = 188 bits (458), Expect = 3e-46
Identities = 114/387 (29%), Positives = 211/387 (54%), Gaps = 18/387 (4%)
Query: 80 FEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMIAQSQSGTGKTAAFVLAML 139
F+ + ++L+ + +G+ P+K+Q++ +P L ++++ +SQ+G+GKTA+F + +
Sbjct: 4 FKNYQISHDILRALEGLGYTEPTKVQQSVIPAALER--KDLVVKSQTGSGKTASFGIPLC 61
Query: 140 SRVDSNKNYPQVLCLSPTYELAIQTGEVAAKMAKFCPEIKLKYAVRG----EELPRGSKI 195
+ ++N PQ L L+PT ELA+Q E + +F IK AV G ++ K
Sbjct: 62 ELANWDENKPQALILTPTRELAVQVKEDITNIGRF-KRIKAT-AVFGKSSFDKQKAELKQ 119
Query: 196 TDHILIGTPGKMFDWGVKFGMFDMGKIKVFVLDEADVMINRQGHQDQCIRIHKCLPSTCQ 255
HI++GTPG++ D ++ G + ++ V+DEAD M+N G +Q I K LP+
Sbjct: 120 KSHIVVGTPGRVLDH-IEKGTLPLDRLSYLVIDEADEMLN-MGFIEQVEAIIKHLPTERT 177
Query: 256 MMFFSATYGTAVMQFAEIIVSNPIIIRLLREEESLDNIKQYYVKCKSAEDKYRAICNIYG 315
M FSAT + + + + NP I + + NI+ ++ + E+K+ + ++
Sbjct: 178 TMLFSATLPQDIEKLSRQYMQNPEHIEVKAAGLTTRNIEHAVIQVRE-ENKFSLLKDVLM 236
Query: 316 VITIGQAIIFCHTRKTASWLSEKMSKDGHSVAVLSGELTVEQRIAVLDRFRVGLEKVLIT 375
IIFC T++ + L++++ G+ + G + E R V++ F+ G + L+
Sbjct: 237 TENPDSCIIFCRTKEHVNQLTDELDDLGYPCDKIHGGMIQEDRFDVMNEFKRGEYRYLVA 296
Query: 376 TNVLSRGIDVEQVTLVVNFDMPMDMNRKADCETYLHRIGRTGRFGKAGIAINLIDSPQAM 435
T+V +RGID+E ++LV+N+D+P++ E+Y+HR GRTGR G G AI+ + + +
Sbjct: 297 TDVAARGIDIENISLVINYDLPLEK------ESYVHRTGRTGRAGNKGKAISFVTAFE-K 349
Query: 436 EICTDIEAHFGKKIQLLDIEDAEEIEK 462
DIE + G +I ++ EE+ +
Sbjct: 350 RFLADIEEYIGFEIPKIEAPSQEEVAR 376
>UniRef50_UPI0000E87E35 Cluster: putative ATP-dependent RNA helicase
protein; n=1; Methylophilales bacterium HTCC2181|Rep:
putative ATP-dependent RNA helicase protein -
Methylophilales bacterium HTCC2181
Length = 427
Score = 187 bits (455), Expect = 6e-46
Identities = 124/386 (32%), Positives = 210/386 (54%), Gaps = 18/386 (4%)
Query: 79 TFEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMIAQSQSGTGKTAAFVLAM 138
+F+ +L ++LK + G++ P+ IQ ++P ++ + ++++A +Q+GTGKTAAFVL +
Sbjct: 2 SFQTFNLDASILKAIQEAGYDQPTPIQTKSIPEIMLN--KHVLASAQTGTGKTAAFVLPI 59
Query: 139 LSRVDSNKNY---PQVLCLSPTYELAIQTGEVAAKMAKFCP--EIKLKYAVR-GEELPRG 192
L ++ N++ P+VL +SPT ELA Q + K +++ I + + G +
Sbjct: 60 LDKLTKNRSEGRGPRVLIVSPTRELATQITDSIKKYSRYLRINSITITGGISYGLQNRMF 119
Query: 193 SKITDHILIGTPGKMFDWGVKFGMFDMGKIKVFVLDEADVMINRQGHQDQCIRIHKCLPS 252
SK D IL+ TPG++ D + + G ++V +LDEAD M++ G +I+
Sbjct: 120 SKPID-ILVATPGRLLDLYQQKKINFKG-LEVMILDEADRMLD-MGFVPDIRKIYNATSK 176
Query: 253 TCQMMFFSATYGTAVMQFAEIIVSNPIIIRLLREEESLDNIKQYYVKCKSAEDKYRAICN 312
QM+ FSAT+ + + A+ ++NP+ I + + NIKQ + K + + +
Sbjct: 177 KQQMLMFSATFDPPIQKIAQEFLTNPVTISIKPDVSGHKNIKQLIYFADNQSHKQQMLDH 236
Query: 313 IYGVITIGQAIIFCHTRKTASWLSEKMSKDGHSVAVLSGELTVEQRIAVLDRFRVGLEKV 372
+ QAIIF T++ A LS+++ + L G+++ R ++RF+ K+
Sbjct: 237 FIKNDEVTQAIIFTATKRMADQLSDQLYHSDIKTSALHGDMSQGSRTKTINRFKRNETKI 296
Query: 373 LITTNVLSRGIDVEQVTLVVNFDMPMDMNRKADCETYLHRIGRTGRFGKAGIAINLIDSP 432
L+ T++ SRGIDV+ ++ V N+DMP R A E Y+HRIGRTGR GIAI+L+ SP
Sbjct: 297 LVATDLASRGIDVKNISHVFNYDMP----RFA--EDYIHRIGRTGRANNKGIAISLV-SP 349
Query: 433 QAMEICTDIEAHFGKKIQLLDIEDAE 458
E IE KI++ I E
Sbjct: 350 TDREFLRKIERFTNLKIEIASIPGME 375
>UniRef50_A6GPV2 Cluster: Helicase; n=1; Limnobacter sp. MED105|Rep:
Helicase - Limnobacter sp. MED105
Length = 539
Score = 186 bits (453), Expect = 1e-45
Identities = 123/388 (31%), Positives = 202/388 (52%), Gaps = 23/388 (5%)
Query: 79 TFEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMIAQSQSGTGKTAAFVLAM 138
TF L P++ K + A G+ P+ IQ A+P ++ +++ +Q+GTGKTA F L +
Sbjct: 21 TFADFALHPDIQKAIDAQGYTQPTPIQAKAIPVVMTGV--DVMGAAQTGTGKTAGFSLPI 78
Query: 139 LSRV-------DSNKNYP-QVLCLSPTYELAIQTGEVAAKMAKFCPEIKLKYAVRGEEL- 189
L+R+ S +P + L L+PT ELA Q AKF P ++ G ++
Sbjct: 79 LNRLMPLATENTSPARHPVRALILTPTRELADQVAANVHTYAKFTP-LRSTVVYGGVDIN 137
Query: 190 PRGSKITD--HILIGTPGKMFDWGVKFGMFDMGKIKVFVLDEADVMINRQGHQDQCIRIH 247
P+ + ++I TPG++ D V+ ++G+++V VLDEAD M++ G RI
Sbjct: 138 PQIQTLRRGVELVIATPGRLLDH-VQQKSINLGQVQVLVLDEADRMLD-MGFLPDLQRII 195
Query: 248 KCLPSTCQMMFFSATYGTAVMQFAEIIVSNPIIIRLLREEESLDNIKQYYVKCKSAEDKY 307
LP T Q + FSAT+ + + A+ + +P +I + R + +NIKQ S EDK
Sbjct: 196 NLLPKTRQNLLFSATFSPEIQKLAKSFMVSPTLIEVARRNATSENIKQVIFALDSEEDKR 255
Query: 308 RAICNIYGVITIGQAIIFCHTRKTASWLSEKMSKDGHSVAVLSGELTVEQRIAVLDRFRV 367
A+C++ + Q I+F +T+ + L+ + K+G S + G+ T +R L+ F+
Sbjct: 256 MAVCHLIQSKALSQVIVFSNTKLGTARLARHLEKEGVSSTAIHGDKTQIERTKSLEAFKA 315
Query: 368 GLEKVLITTNVLSRGIDVEQVTLVVNFDMPMDMNRKADCETYLHRIGRTGRFGKAGIAIN 427
G VL+ T+V +RG+D+ + V+N+D+P E Y+HRIGRTGR G G A +
Sbjct: 316 GEVTVLVATDVAARGLDIADLPCVINYDLP------TTPEDYVHRIGRTGRAGAKGTAYS 369
Query: 428 LIDSPQAMEICTDIEAHFGKKIQLLDIE 455
+ + DIE GK ++E
Sbjct: 370 FVVKRDERAL-KDIEKLIGKAFVREELE 396
>UniRef50_A4FZ46 Cluster: DEAD/DEAH box helicase domain protein;
n=4; Euryarchaeota|Rep: DEAD/DEAH box helicase domain
protein - Methanococcus maripaludis
Length = 541
Score = 186 bits (453), Expect = 1e-45
Identities = 122/392 (31%), Positives = 210/392 (53%), Gaps = 17/392 (4%)
Query: 77 VKTFEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMIAQSQSGTGKTAAFVL 136
+++F+ L L +L+ + GF P+ IQE A+P L+ + ++++ Q+Q+GTGKTAAF +
Sbjct: 1 MESFKNLGLSDEILEALEKKGFTTPTPIQEQAIPILI-EGKRDIVGQAQTGTGKTAAFGI 59
Query: 137 AMLSRVDSNKNYPQVLCLSPTYELAIQTGEVAAKMAKFCPEIKLKYAVRGEELPRGSKIT 196
+L +D + Q L L+PT ELAIQ E + K + + G+ + R +
Sbjct: 60 PILETIDESSRNTQALILAPTRELAIQVAEEIDSI-KGSKRLNVFPVYGGQSIDRQIREL 118
Query: 197 DH---ILIGTPGKMFDWGVKFGMFDMGKIKVFVLDEADVMINRQGHQDQCIRIHKCLPST 253
I++GTPG++ D + + + VLDEAD M+N G D I K + +
Sbjct: 119 RRGVQIVVGTPGRILDH-ISRRTIKLENVSYVVLDEADEMLN-MGFIDDVEEILKSVSTE 176
Query: 254 CQMMFFSATYGTAVMQFAEIIVSNPIIIRLLREEESLDNIKQYYVKCKSAEDKYRAICNI 313
+M+ FSAT ++M+ A+ + II++ R++ + Q + + S DK+ + I
Sbjct: 177 KRMLLFSATLPDSIMKLAKNYMREYDIIKVKRQQLTTTLTDQSFYEIHS-RDKFELLSRI 235
Query: 314 YGVITIGQAIIFCHTRKTASWLSEKMSKDGHSVAVLSGELTVEQRIAVLDRFRVGLEKVL 373
+ +IFC T+ +S ++++ G++ L G++T QR LD+F+ VL
Sbjct: 236 IDLEKEFYGLIFCKTKADVDEVSSRLNEKGYAAEGLHGDMTQAQREKTLDKFKGRKINVL 295
Query: 374 ITTNVLSRGIDVEQVTLVVNFDMPMDMNRKADCETYLHRIGRTGRFGKAGIAINLIDSPQ 433
+ T+V +RGID+ +T VVN+D+P + E+Y+HRIGRTGR GK G A+ ++ P
Sbjct: 296 VATDVAARGIDINDLTHVVNYDIPQNP------ESYVHRIGRTGRAGKQGYAVTFVE-PS 348
Query: 434 AMEICTDIEAHFGKKIQLLDIEDAEEIEKIGA 465
I+ +I+ ++ D ++I IGA
Sbjct: 349 EFRKFKYIQKIAKTEIRKEEVPDVKDI--IGA 378
>UniRef50_Q31AC4 Cluster: DEAD/DEAH box helicase-like protein; n=7;
Prochlorococcus marinus|Rep: DEAD/DEAH box helicase-like
protein - Prochlorococcus marinus (strain MIT 9312)
Length = 593
Score = 186 bits (452), Expect = 1e-45
Identities = 126/380 (33%), Positives = 202/380 (53%), Gaps = 20/380 (5%)
Query: 57 VESKLDIEIQRKDPNSPLYSVKTFEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLADP 116
+E+K DI+ Q + + + F ++L + G+ P+ IQ+ A+P L+
Sbjct: 30 LENKTDIKSQPLEISIGNDNENGFLDFGFNQSILNSLSNKGYKNPTPIQKAAIPELMLG- 88
Query: 117 PQNMIAQSQSGTGKTAAFVLAMLSRVDSNKNY-PQVLCLSPTYELAIQTGEVAAKMAKFC 175
++++ Q+Q+GTGKTAAF L ++ ++ NK +VL ++PT ELA Q E +
Sbjct: 89 -RDLLGQAQTGTGKTAAFALPLIEKLADNKELNAKVLVMTPTRELATQVAESFKSYSSES 147
Query: 176 PEIKLKYAVRGEELPR---GSKITDHILIGTPGKMFDWGVKFGMFDMGKIKVFVLDEADV 232
K G + K +++GTPG++ D ++ G F + I VLDEAD
Sbjct: 148 TNFKTIAIYGGTDYRNQIYALKRKVDVVVGTPGRIMDH-IRQGTFKVNSINCLVLDEADE 206
Query: 233 MINRQGHQDQCIRIHKCLPSTCQMMFFSATYGTAVMQFAEIIVSNP--IIIRLLREEESL 290
M+N G + I LP QM+ FSAT + A+ +++P I+I+ +++E L
Sbjct: 207 MLN-MGFLEDIEWIIDQLPKNKQMVLFSATMPNEIRNIAKKYLNDPAEILIKSVKKETQL 265
Query: 291 DNIKQYYVKCKSAEDKYRAICNIYGVITIGQAIIFCHTRKTASWLSEKMSKDGHSVAVLS 350
+ K YV+ K A+ I + G IIF T+ + ++E + GHSVAVL+
Sbjct: 266 ISQKFLYVQ---RHHKLDALKRILELNNEG-VIIFVRTKLLTTSIAEALENLGHSVAVLN 321
Query: 351 GELTVEQRIAVLDRFRVGLEKVLITTNVLSRGIDVEQVTLVVNFDMPMDMNRKADCETYL 410
G++ QR +DR + G +L+ T+V +RG+DVE++ LVVN+D P D ETY
Sbjct: 322 GDIPQNQRENTVDRLKKGFIDILVATDVAARGLDVERIKLVVNYDFPFDK------ETYT 375
Query: 411 HRIGRTGRFGKAGIAINLID 430
HRIGRTGR G++G AI ++
Sbjct: 376 HRIGRTGRAGRSGEAILFVN 395
>UniRef50_A7HKQ8 Cluster: DEAD/DEAH box helicase domain protein;
n=1; Fervidobacterium nodosum Rt17-B1|Rep: DEAD/DEAH box
helicase domain protein - Fervidobacterium nodosum
Rt17-B1
Length = 571
Score = 186 bits (452), Expect = 1e-45
Identities = 116/354 (32%), Positives = 191/354 (53%), Gaps = 15/354 (4%)
Query: 80 FEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMIAQSQSGTGKTAAFVLAML 139
FE L +L + G+ P++IQ+ LP L+ +++IAQ+Q+GTGKTAAF + +L
Sbjct: 20 FEDFGLSEEILLAIQKKGYEKPTEIQKIVLPYALSTD-KDLIAQAQTGTGKTAAFGIPLL 78
Query: 140 SRVDSNKN-YPQVLCLSPTYELAIQTGEVAAKMAKFCPEIKLKYAVRGEELPRGSKITDH 198
R+D N + + + ++PT ELA+Q E K K +K+ G+ L + K +
Sbjct: 79 ERIDFKANKFVKAIIVTPTRELALQIFE-ELKSLKGTKRVKITTLYGGQSLEKQFKDLEK 137
Query: 199 ---ILIGTPGKMFDWGVKFGMFDMGKIKVFVLDEADVMINRQGHQDQCIRIHKCLPSTCQ 255
I++GTPG++ D + D+ ++ VLDEAD M++ G D + I K +
Sbjct: 138 GVDIVVGTPGRIIDH-LNRDTLDLSHVEYLVLDEADRMLD-MGFLDDVLEIIKRTGENKR 195
Query: 256 MMFFSATYGTAVMQFAEIIVSNPIIIRLLREEESLDNIKQYYVKCKSAEDKYRAICNIYG 315
FSAT ++ A + I + +++E + +N +Q Y + +DK +C I
Sbjct: 196 TFLFSATMPKEIVDIARKFMKEYIHVSTVKDELTTENAEQLYFEVDE-KDKLPLLCRIID 254
Query: 316 VITIGQAIIFCHTRKTASWLSEKMSKDGHSVAVLSGELTVEQRIAVLDRFRVGLEKVLIT 375
+ I+FC T+ +S+K+ G++ L G+ + QR VLD+FR ++L+T
Sbjct: 255 MNPDFYGIVFCQTKLEVDEISKKLLDLGYNADGLHGDYSQYQRERVLDKFRKKQLRILVT 314
Query: 376 TNVLSRGIDVEQVTLVVNFDMPMDMNRKADCETYLHRIGRTGRFGKAGIAINLI 429
T+V +RGID++ +T V+N+ +P D E Y+HRIGRTGR GK G AI +
Sbjct: 315 TDVAARGIDIDGLTHVINYSVPRDP------EYYVHRIGRTGRAGKKGFAITFV 362
>UniRef50_Q81JK1 Cluster: ATP-dependent RNA helicase, DEAD/DEAH box
family; n=30; Firmicutes|Rep: ATP-dependent RNA
helicase, DEAD/DEAH box family - Bacillus anthracis
Length = 481
Score = 185 bits (450), Expect = 3e-45
Identities = 118/391 (30%), Positives = 203/391 (51%), Gaps = 18/391 (4%)
Query: 76 SVKTFEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMIAQSQSGTGKTAAFV 135
S K+F L + + + +G+ P+++Q +P L ++++ +SQ+G+GKTA+F
Sbjct: 2 SKKSFSNYALSKEVRRALTGLGYEHPTEVQGEVIPVALQK--KDLVVKSQTGSGKTASFG 59
Query: 136 LAMLSRVDSNKNYPQVLCLSPTYELAIQTGEVAAKMAKFCPEIKLKYAVRGEELPRGSKI 195
+ + V+ +N PQ L L+PT ELA+Q E + +F IK A+ G+ K+
Sbjct: 60 IPLCEMVEWEENKPQALVLTPTRELAVQVKEDITNIGRF-KRIKAA-AIYGKSPFARQKL 117
Query: 196 T----DHILIGTPGKMFDWGVKFGMFDMGKIKVFVLDEADVMINRQGHQDQCIRIHKCLP 251
HI++GTPG++ D ++ G + ++K V+DEAD M+N G DQ I LP
Sbjct: 118 ELKQKTHIVVGTPGRVLDH-IEKGTLSLERLKYLVIDEADEMLN-MGFIDQVEAIIDELP 175
Query: 252 STCQMMFFSATYGTAVMQFAEIIVSNPIIIRLLREEESLDNIKQYYVKCKSAEDKYRAIC 311
+ M FSAT V + + ++ P I + + D I+ + + E+K +
Sbjct: 176 TKRMTMLFSATLPEDVERLSRTYMNAPTHIEIKAAGITTDKIEHTLFEVRE-EEKLSLLK 234
Query: 312 NIYGVITIGQAIIFCHTRKTASWLSEKMSKDGHSVAVLSGELTVEQRIAVLDRFRVGLEK 371
++ + IIFC T++ + ++ + + + G + E R V+D FR G +
Sbjct: 235 DVTTIENPDSCIIFCRTQENVDHVYRQLDRVNYPCDKIHGGMVQEDRFGVMDDFRKGKFR 294
Query: 372 VLITTNVLSRGIDVEQVTLVVNFDMPMDMNRKADCETYLHRIGRTGRFGKAGIAINLIDS 431
L+ T+V +RGID++ +T V+N+D+P++ E+Y+HR GRTGR G +G AI I +
Sbjct: 295 YLVATDVAARGIDIDNITHVINYDIPLEK------ESYVHRTGRTGRAGNSGKAITFI-T 347
Query: 432 PQAMEICTDIEAHFGKKIQLLDIEDAEEIEK 462
P +IEA+ G I + EE+ K
Sbjct: 348 PYEDRFLEEIEAYIGFAIPKANAPSKEEVMK 378
>UniRef50_Q2FKY7 Cluster: DEAD/DEAH box helicase-like; n=1;
Methanospirillum hungatei JF-1|Rep: DEAD/DEAH box
helicase-like - Methanospirillum hungatei (strain JF-1 /
DSM 864)
Length = 531
Score = 185 bits (450), Expect = 3e-45
Identities = 118/387 (30%), Positives = 195/387 (50%), Gaps = 15/387 (3%)
Query: 77 VKTFEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMIAQSQSGTGKTAAFVL 136
+ +F L L P ++K + +G+ P+ IQ+ +P +LA ++ Q+ +GTGKTAAF +
Sbjct: 3 IPSFSDLQLSPGIIKAIRDIGYEEPTPIQQEVIPLILAG--NDVAGQAYTGTGKTAAFGI 60
Query: 137 AMLSRVDSNKNYPQVLCLSPTYELAIQTGEVAAKMAKFCPEIKLKYAVRGEELPRGSKIT 196
+ Q + L P+ ELA+Q G K+A I + G+ + R K
Sbjct: 61 PAIELCQPANRNVQTIVLCPSRELAVQVGTELNKLAMHKKGISILPVYGGQPIERQIKAL 120
Query: 197 DH---ILIGTPGKMFDWGVKFGMFDMGKIKVFVLDEADVMINRQGHQDQCIRIHKCLPST 253
I+IGTPG++ D +K + + + VLDEAD M++ G ++ I +P
Sbjct: 121 SRGVQIIIGTPGRVIDH-IKRKTLLLDAVSLVVLDEADQMLD-MGFREDIEEILSHIPKE 178
Query: 254 CQMMFFSATYGTAVMQFAEIIVSNPIIIRLLREEESLDNIKQYYVKCKSAEDKYRAICNI 313
Q + SAT+ ++ + NPI ++++ +E ++ I+QYY++ + K + +
Sbjct: 179 RQTVILSATFPPEILDISRRFQKNPIDVKMVHQELTVPQIEQYYIEVREPA-KADTLIRV 237
Query: 314 YGVITIGQAIIFCHTRKTASWLSEKMSKDGHSVAVLSGELTVEQRIAVLDRFRVGLEKVL 373
+ IIFC+T+ +S + +G L G + QR V++ FR G ++L
Sbjct: 238 LEFYQPQRTIIFCNTQIAVDAVSSALKAEGFLADGLHGGMAQAQRDKVMNAFRKGQLEIL 297
Query: 374 ITTNVLSRGIDVEQVTLVVNFDMPMDMNRKADCETYLHRIGRTGRFGKAGIAINLIDSPQ 433
I T+V +RGIDVE++ LV NFD P D E Y+HRIGRT R G+ G AI+ + SP+
Sbjct: 298 IATDVAARGIDVEEIDLVCNFDFPQ------DDEYYVHRIGRTARAGRTGRAISFV-SPR 350
Query: 434 AMEICTDIEAHFGKKIQLLDIEDAEEI 460
D+ + + L I EI
Sbjct: 351 ERYRLRDVRRSTRAEPEPLPIPTLREI 377
>UniRef50_Q8SQK9 Cluster: ATP-dependent RNA helicase DHH1; n=1;
Encephalitozoon cuniculi|Rep: ATP-dependent RNA helicase
DHH1 - Encephalitozoon cuniculi
Length = 489
Score = 185 bits (450), Expect = 3e-45
Identities = 118/376 (31%), Positives = 211/376 (56%), Gaps = 17/376 (4%)
Query: 80 FEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMIAQSQSGTGKTAAFVLAML 139
+E+L L P LLK + +G++ PS +Q ++P +L +N++ +S++GTGKTA++++ ML
Sbjct: 110 WESLGLGPVLLKRIRDIGYDFPSPVQVASIPHVLGG--KNLLVRSKNGTGKTASYIVPML 167
Query: 140 SRVDSNKNYPQVLCLSPTYELAIQTGEVAAKMAKFCPEIKLKYAVRGEELPRGS-KITD- 197
+ ++S++ Q + L P ELA+Q +M++ I V G + ++++
Sbjct: 168 NMINSSELSIQGIILVPIRELALQISRNVKRMSEGTGVISAP-VVGGTSMQDDIIRVSNG 226
Query: 198 -HILIGTPGKMFDWGVKFGMFDMGKIKVFVLDEADVMINRQGHQDQCIRIHKCLPSTCQM 256
H+++GTPG++ D V+ + + K + V DEAD +++ + ++ LP QM
Sbjct: 227 VHVMVGTPGRIVDL-VEKRVGTLSKRVILVFDEADKLLDVT-FGETVTKLLDLLPREKQM 284
Query: 257 MFFSATYGTAVMQFAEIIVSNPIIIRLLREEESLDNIKQYYVKCKSAEDKYRAICNIYGV 316
+ +SAT+ V F + NP+ I L++E + +KQ+Y K +E K + ++
Sbjct: 285 LLYSATFPYFVTGFIRRYMKNPLCINLMKELAPV-GVKQFYTYVKPSE-KLLCLKSLLLR 342
Query: 317 ITIGQAIIFCHTRKTASWLSEKMSKDGHSVAVLSGELTVEQRIAVLDRFRVGLEKVLITT 376
++I Q +IFC++ KT L+ K+++ G + ++ E R V F G K+L+ T
Sbjct: 343 LSINQCVIFCNSIKTVELLAMKITEMGLPSYFIHSKMAQEDRNIVFHNFLKGKCKILVAT 402
Query: 377 NVLSRGIDVEQVTLVVNFDMPMDMNRKADCETYLHRIGRTGRFGKAGIAINLIDSPQAME 436
++++RG+D V+NFD+ E+YLHRIGR GRFG G+AI+L+ + + E
Sbjct: 403 DLITRGVDAPNTNYVINFDI------SKSPESYLHRIGRAGRFGAPGVAISLV-TTEEKE 455
Query: 437 ICTDIEAHFGKKIQLL 452
+ DIEA GK+I L
Sbjct: 456 MLMDIEAKLGKEISPL 471
>UniRef50_Q2LY23 Cluster: Superfamily II DNA and RNA helicases; n=2;
Bacteria|Rep: Superfamily II DNA and RNA helicases -
Syntrophus aciditrophicus (strain SB)
Length = 572
Score = 184 bits (449), Expect = 3e-45
Identities = 118/369 (31%), Positives = 198/369 (53%), Gaps = 23/369 (6%)
Query: 77 VKTFEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMIAQSQSGTGKTAAFVL 136
+KTF + +++KG+ +GF+ + +QE +P +L + +++ +Q+GTGKTAAF +
Sbjct: 1 MKTFAEFEINTDIMKGLDGLGFSVMTPVQEKIIPIVL-NRQTDLVGLAQTGTGKTAAFGI 59
Query: 137 AMLSRVDSNKNYPQVLCLSPTYELAIQTGEVAAKMAKFCPEIKLKYAVRG-------EEL 189
++ D+ Q L L PT EL +Q M ++ ++K+ G EEL
Sbjct: 60 PLIQLTDTRLKRTQALVLCPTRELCVQVAGDLNLMGRYVQKLKIVPVYGGASIVSQTEEL 119
Query: 190 PRGSKITDHILIGTPGKMFDWGVKFGMFDMGKIKVFVLDEADVMINRQGHQDQCIRIHKC 249
+G+++ ++ TPG++ D ++ G D+ + VLDEAD M+ + G QD+ I
Sbjct: 120 RKGAQV----VVATPGRLHDL-IRRGAVDLSGVSWVVLDEADEML-QMGFQDELNAILAV 173
Query: 250 LPSTCQMMFFSATYGTAVMQFAEIIVSNPIIIRLLREEESLDNIKQ-YYVKCKSAEDKYR 308
P + + FSAT V A + +P+ I + R +N+ YYV SA +Y+
Sbjct: 174 TPDSKNTLLFSATMPREVAAIAANYMKDPLEIIVGRRNAGAENVDHIYYVV--SARHRYQ 231
Query: 309 AICNIYGVITIGQAIIFCHTRKTASWLSEKMSKDGHSVAVLSGELTVEQRIAVLDRFRVG 368
A+ I + AIIFC TR + +K+ +DG+S L G+L+ QR V+ +FR
Sbjct: 232 ALRRIADMNPELYAIIFCRTRLETREIVDKLIEDGYSADALHGDLSQSQRDHVMHKFRSR 291
Query: 369 LEKVLITTNVLSRGIDVEQVTLVVNFDMPMDMNRKADCETYLHRIGRTGRFGKAGIAINL 428
++L+ T+V +RG+DV +T V+N+ +P + Y HR GRTGR GK GI+I L
Sbjct: 292 NIRMLVATDVAARGLDVNDLTHVINYSLP------EESSGYTHRSGRTGRAGKKGISIAL 345
Query: 429 IDSPQAMEI 437
I++ + +I
Sbjct: 346 IETREKHKI 354
>UniRef50_P0C218 Cluster: Probable ATP-dependent RNA helicase DDX20;
n=9; Euteleostomi|Rep: Probable ATP-dependent RNA
helicase DDX20 - Danio rerio (Zebrafish) (Brachydanio
rerio)
Length = 761
Score = 184 bits (449), Expect = 3e-45
Identities = 118/359 (32%), Positives = 189/359 (52%), Gaps = 21/359 (5%)
Query: 80 FEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMIAQSQSGTGKTAAFVLAML 139
F +L L +L+G+ A GF PS IQ A+P L ++I Q++SGTGKT F L
Sbjct: 28 FSSLLLSKPVLEGLSASGFQRPSPIQLKAIP--LGRCGLDLIVQAKSGTGKTCVFTTIAL 85
Query: 140 SRVDSNKNYPQVLCLSPTYELAIQTGEVAAKMAKFCPEIKLKYAVRGEELPRGSKITD-- 197
+ QVL L+PT E+A+Q V + ++ + G + + +
Sbjct: 86 DSLILENATTQVLVLAPTREIAVQIHAVVMAIGSAMEGLECHVFIGGRPISQDKQHLKKC 145
Query: 198 HILIGTPGKMFDWGVKFGMFDMGKIKVFVLDEADVMI---NRQGHQDQCIRIHKCLPSTC 254
HI IG+PG++ ++ G + I++FVLDEAD ++ + Q+Q I+ LP+
Sbjct: 146 HIAIGSPGRIKQL-IEMGALMVSSIRLFVLDEADKLLEDDSSSSFQEQINWIYSSLPANK 204
Query: 255 QMMFFSATYGTAVMQFAEIIVSNPIIIRLLREEESLDNIKQYY-------VKCKSAEDKY 307
QM+ SATY ++ Q + P +RL + L +KQYY + K E+K
Sbjct: 205 QMLALSATYPESLAQQLSRYMREPTFVRLNPTDPGLLGLKQYYKIVPSHSLPHKVFEEKV 264
Query: 308 RAICNIYGVITIGQAIIFCHTRKTASWLSEKMSKDGHSVAVLSGELTVEQRIAVLDRFRV 367
+++ ++ I QA++F + A L++ +S G +SG L+ +QR+ + + +
Sbjct: 265 QSLLELFSKIPFNQALVFSNLHTRAQHLADILSSKGLPAVCISGGLSQDQRLEAMWKLKQ 324
Query: 368 GLEKVLITTNVLSRGIDVEQVTLVVNFDMPMDMNRKADCETYLHRIGRTGRFGKAGIAI 426
+VLI+T++ SRGID E+V LV+N D+P D ETY+HRIGR GRFG G+A+
Sbjct: 325 YQCRVLISTDLTSRGIDAEKVNLVINLDVPQDW------ETYMHRIGRAGRFGTLGVAV 377
>UniRef50_Q6MN67 Cluster: ATP-dependent RNA helicase; n=3;
Deltaproteobacteria|Rep: ATP-dependent RNA helicase -
Bdellovibrio bacteriovorus
Length = 505
Score = 184 bits (448), Expect = 4e-45
Identities = 112/365 (30%), Positives = 197/365 (53%), Gaps = 16/365 (4%)
Query: 76 SVKTFEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMIAQSQSGTGKTAAFV 135
S F L L P LL V +GF + IQ+ ++P LLA +++I Q+++G+GKTAAF
Sbjct: 45 SQNEFSTLPLSPELLTVVQELGFETLTPIQQESIPLLLAG--KDIIGQAKTGSGKTAAFS 102
Query: 136 LAMLSRVDSNKNYPQVLCLSPTYELAIQTGEVAAKMAKFCPEIKLKYAVRGEELPRGSKI 195
L +L++++ ++ Q L L PT ELA Q K+ + P +K+ G+ +
Sbjct: 103 LPILNKINLDQPLLQALILCPTRELASQVVTEIRKLGRRLPGLKVLAMTGGQSGREQADA 162
Query: 196 TDH---ILIGTPGKMFDWGVKFGMFDMGKIKVFVLDEADVMINRQGHQDQCIRIHKCLPS 252
++ I++GTPG++ D+ V D+ +K VLDEAD M++ G D+ + + LP
Sbjct: 163 LENGVQIVVGTPGRLADF-VGRNRIDLSAVKTVVLDEADKMLD-MGFADEIKTVMRDLPG 220
Query: 253 TCQMMFFSATYGTAVMQFAEIIVSNPIIIRLLREEESLDNIKQYYVKCKSAEDKYRAICN 312
+ Q + FSAT+ ++ + + + ++ +EE N+ + V DK +
Sbjct: 221 SRQTVLFSATFPESIEHLSRKYQRHAQQV-IIEDEEQ--NLIEQLVYDSEDNDKTNVLMR 277
Query: 313 IYGVITIGQAIIFCHTRKTASWLSEKMSKDGHSVAVLSGELTVEQRIAVLDRFRVGLEKV 372
I IIFC+T+ + ++E+++ G + L G++ +R V+ FR G ++
Sbjct: 278 ILQQHPSDSTIIFCNTKNAVAEIAERLNDLGAASGCLHGDMEQRERDRVMAMFRNGSHRI 337
Query: 373 LITTNVLSRGIDVEQVTLVVNFDMPMDMNRKADCETYLHRIGRTGRFGKAGIAINLIDSP 432
L+ T+V +RG+D++ + LV+NFD+P+ E Y+HRIGRTGR GK G+A+ +
Sbjct: 338 LVATDVAARGLDIDNLELVINFDLPLSP------EIYVHRIGRTGRAGKTGVAVTIAHPK 391
Query: 433 QAMEI 437
+++
Sbjct: 392 DTLKL 396
>UniRef50_Q13838 Cluster: Spliceosome RNA helicase BAT1; n=55;
Eukaryota|Rep: Spliceosome RNA helicase BAT1 - Homo
sapiens (Human)
Length = 428
Score = 184 bits (447), Expect = 6e-45
Identities = 113/396 (28%), Positives = 197/396 (49%), Gaps = 17/396 (4%)
Query: 67 RKDPNSPLYSVKT--FEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMIAQS 124
+KD S+ + F LKP LL+ + GF PS++Q +P + +++ Q+
Sbjct: 32 KKDVKGSYVSIHSSGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILG--MDVLCQA 89
Query: 125 QSGTGKTAAFVLAMLSRVDSNKNYPQVLCLSPTYELAIQTGEVAAKMAKFCPEIKLKYAV 184
+SG GKTA FVLA L +++ VL + T ELA Q + + +K+ P +K+
Sbjct: 90 KSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFF 149
Query: 185 RGEELPRGSKITD----HILIGTPGKMFDWGVKFGMFDMGKIKVFVLDEADVMINRQGHQ 240
G + + ++ HI++GTPG++ + ++ IK F+LDE D M+ + +
Sbjct: 150 GGLSIKKDEEVLKKNCPHIVVGTPGRILALARNKSL-NLKHIKHFILDECDKMLEQLDMR 208
Query: 241 DQCIRIHKCLPSTCQMMFFSATYGTAVMQFAEIIVSNPIIIRLLREEE-SLDNIKQYYVK 299
I + P Q+M FSAT + + +P+ I + E + +L ++QYYVK
Sbjct: 209 RDVQEIFRMTPHEKQVMMFSATLSKEIRPVCRKFMQDPMEIFVDDETKLTLHGLQQYYVK 268
Query: 300 CKSAEDKYRAICNIYGVITIGQAIIFCHTRKTASWLSEKMSKDGHSVAVLSGELTVEQRI 359
K E K R + ++ V+ Q +IF + + L++ + + + + E+R+
Sbjct: 269 LKDNE-KNRKLFDLLDVLEFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERL 327
Query: 360 AVLDRFRVGLEKVLITTNVLSRGIDVEQVTLVVNFDMPMDMNRKADCETYLHRIGRTGRF 419
+ +F+ ++L+ TN+ RG+D+E+V + N+DMP D +TYLHR+ R GRF
Sbjct: 328 SRYQQFKDFQRRILVATNLFGRGMDIERVNIAFNYDMP------EDSDTYLHRVARAGRF 381
Query: 420 GKAGIAINLIDSPQAMEICTDIEAHFGKKIQLLDIE 455
G G+AI + +I D++ F I L E
Sbjct: 382 GTKGLAITFVSDENDAKILNDVQDRFEVNISELPDE 417
>UniRef50_Q5GZA1 Cluster: ATP-dependent RNA helicase; n=6;
Xanthomonas|Rep: ATP-dependent RNA helicase -
Xanthomonas oryzae pv. oryzae
Length = 482
Score = 183 bits (445), Expect = 1e-44
Identities = 126/390 (32%), Positives = 204/390 (52%), Gaps = 26/390 (6%)
Query: 70 PNSPLY-SVKTFEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMIAQSQSGT 128
PN L ++ F AL L P L G+ A+G+ + +Q +LP +L ++IAQ+ +G+
Sbjct: 17 PNPGLKCAMNEFSALPLSPALAPGIDALGYTVLTPVQAQSLPPILRG--LDVIAQAPTGS 74
Query: 129 GKTAAFVLAMLSRVDSNKNYPQVLCLSPTYELAIQTGEVAAKMAKFCPEIKLKYAVRGEE 188
GKTAAF L +L ++D Q L L PT ELA Q G+ K+A P +KL G
Sbjct: 75 GKTAAFGLGLLQKLDPALTRAQALVLCPTRELADQVGKQLRKLATGIPNMKLVVLTGG-- 132
Query: 189 LPRGSKITD------HILIGTPGKMFDWGVKFGMFDMGKIKVFVLDEADVMINRQGHQDQ 242
+P G ++ H+++GTPG++ + K + +G ++ VLDEAD M++ G ++
Sbjct: 133 MPLGPQLASLEAHDPHVVVGTPGRIQELARKRALH-LGGVRTLVLDEADRMLD-MGFEEP 190
Query: 243 CIRIHKCLPSTCQMMFFSATYGTAVMQFAEIIVSNPIIIRLLREEESLDNIKQYYVKCKS 302
I Q + FSAT+ + A I+ +PI I + E DN + +
Sbjct: 191 IREIASRCDKHRQSLLFSATFPDIIRTLAREILKDPIEITV----EGADNAPEIDQQFFE 246
Query: 303 AEDKYR--AICNIYGVITIGQAIIFCHTRKTASWLSEKMSKDGHSVAVLSGELTVEQRIA 360
+ YR A+ + T +++FC+TRK ++ + + G S L G++ R
Sbjct: 247 VDPTYRQKAVAGLLLRFTPESSVVFCNTRKEVDEVAGSLQEFGFSALALHGDMEQRDRDE 306
Query: 361 VLDRFRVGLEKVLITTNVLSRGIDVEQVTLVVNFDMPMDMNRKADCETYLHRIGRTGRFG 420
VL RF VL+ ++V +RG+DVE ++ VVN+++P D ETY HRIGRT R G
Sbjct: 307 VLVRFVNRSCNVLVASDVAARGLDVEDLSAVVNYELP------TDTETYRHRIGRTARAG 360
Query: 421 KAGIAINLIDSPQAMEICTDIEAHFGKKIQ 450
K G+A++L+ +P+ +EA G+ ++
Sbjct: 361 KHGLALSLV-APRETARAQALEAEQGQPLK 389
>UniRef50_Q9V3C4 Cluster: CG6539-PA; n=1; Drosophila
melanogaster|Rep: CG6539-PA - Drosophila melanogaster
(Fruit fly)
Length = 1028
Score = 183 bits (445), Expect = 1e-44
Identities = 116/364 (31%), Positives = 189/364 (51%), Gaps = 18/364 (4%)
Query: 77 VKTFEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMIAQSQSGTGKTAAFVL 136
VKTFE L L NLL G+ F P+KIQ A+P LA ++I QS+SGTGKT +V+
Sbjct: 24 VKTFEELRLYRNLLNGLKRNNFVTPTKIQAAAIPMALAK--MDLIIQSKSGTGKTLIYVI 81
Query: 137 AMLSRVDSNKNYPQVLCLSPTYELAIQTGEVAAKMAKFCPEIKLKYAVRGEELPRGSKIT 196
A++ + N N P + + PT ELAIQ + + K + K + G ++ + K
Sbjct: 82 AVVQSFNPNINQPHAMIVVPTRELAIQVQDTFFHLCKSFRDFKCSAFIGGTDVAKDRKRM 141
Query: 197 DH--ILIGTPGKMFDWGVKFGMFDMGKIKVFVLDEADVMINRQGHQDQCIRIHKCLPSTC 254
+ ++IGTPG++ + +FD+ K+++ VLDEAD + + Q ++ + +P
Sbjct: 142 NESRVIIGTPGRLLHL-YENRVFDVSKLRLLVLDEADQLYQTKSLQHTVSKLIEAMPKNR 200
Query: 255 QMMFFSATYGTAVMQFAEIIVSNPIIIRLLREEESLDNIKQYYVKC----KSAED---KY 307
Q++ SATY + + ++ P++I L I+Q+ + S E+ K
Sbjct: 201 QIIACSATYDQNLDERLAKVMDKPMLISNSERATVLLGIRQFVYELPQQNNSVEEMRLKL 260
Query: 308 RAICNIYGVITIGQAIIFCHTRKTASWLSEKMSKDGHSVAVLSGELTVEQRIAVLDRFRV 367
+ + I+ + QAIIF ++ A ++ G ++SG + +R+ V + +R
Sbjct: 261 QILGQIFNQLPYEQAIIFASSQMRADSYKNYLTASGIDCHLISGAMEQSERLHVFEGYRN 320
Query: 368 GLEKVLITTNVLSRGIDVEQVTLVVNFDMPMDMNRKADCETYLHRIGRTGRFGKAGIAIN 427
++L+ T++++RG+D LV+N D P D TYLHRIGR GRFG GIAI
Sbjct: 321 FTMRILVATDLMARGVDSPHANLVINIDPPQDH------VTYLHRIGRAGRFGSKGIAIT 374
Query: 428 LIDS 431
I S
Sbjct: 375 FIAS 378
>UniRef50_Q0W8H7 Cluster: ATP-dependent RNA helicase; n=1;
uncultured methanogenic archaeon RC-I|Rep: ATP-dependent
RNA helicase - Uncultured methanogenic archaeon RC-I
Length = 497
Score = 183 bits (445), Expect = 1e-44
Identities = 117/353 (33%), Positives = 188/353 (53%), Gaps = 15/353 (4%)
Query: 80 FEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMIAQSQSGTGKTAAFVLAML 139
F L+L P++++ V+ MGF + IQE A+P LA +++I Q+++GTGKTAAF + M+
Sbjct: 4 FTELNLTPSIVRAVHEMGFEEATPIQEQAIP--LAMEGKDLIGQARTGTGKTAAFGIPMV 61
Query: 140 SRVDSNKNYPQVLCLSPTYELAIQTGEVAAKMAKFCPEIKLKYAVRGEELPRGSKITD-- 197
+ Q L + PT ELA+Q E ++ K I+ G++ K +
Sbjct: 62 EAIRPTSKGVQGLVVVPTRELAVQVAEELTRIGKV-RGIRSVAIYGGQDFRSQVKALEEL 120
Query: 198 -HILIGTPGKMFDWGVKFGMFDMGKIKVFVLDEADVMINRQGHQDQCIRIHKCLPSTCQM 256
HI++GTPG++ + ++ I++ VLDEAD M++ G D+ +I K LP Q
Sbjct: 121 PHIVVGTPGRLLEH-MRREYVRTSDIRIAVLDEADKMLD-MGFIDEAEKILKKLPERRQT 178
Query: 257 MFFSATYGTAVMQFAEIIVSNPIIIRLLREEESLDNIKQYYVKCKSAEDKYRAICNIYGV 316
+ FSAT V A + +P +I E ++ QYY++ + K+ A+ +
Sbjct: 179 LLFSATLSPPVQMLARKYLKDPELIEFEEEGITVPTTVQYYIEMPEKQ-KFEALTRLLDQ 237
Query: 317 ITIGQAIIFCHTRKTASWLSEKMSKDGHSVAVLSGELTVEQRIAVLDRFRVGLEKVLITT 376
AI+F TR L++ + + G+ L G+L QR LD+F+ G +L+ T
Sbjct: 238 EKPELAIVFVATRIRVGELAKALVERGYHALGLHGDLLQYQRENTLDKFKAGEVSILVAT 297
Query: 377 NVLSRGIDVEQVTLVVNFDMPMDMNRKADCETYLHRIGRTGRFGKAGIAINLI 429
+V +RG+D++ VT V NFD+P D ++Y+HRIGRTGR G AG A +
Sbjct: 298 DVAARGLDIQGVTHVYNFDIPRDP------DSYVHRIGRTGRAGNAGTATTFV 344
>UniRef50_Q27268 Cluster: ATP-dependent RNA helicase WM6; n=82;
Eukaryota|Rep: ATP-dependent RNA helicase WM6 -
Drosophila melanogaster (Fruit fly)
Length = 424
Score = 183 bits (445), Expect = 1e-44
Identities = 114/400 (28%), Positives = 204/400 (51%), Gaps = 18/400 (4%)
Query: 64 EIQRKDPNSPLYSVKT--FEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMI 121
E +KD S+ + F LKP +L+ + GF PS++Q +P + +++
Sbjct: 25 EAPKKDVKGTYVSIHSSGFRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLG--MDIL 82
Query: 122 AQSQSGTGKTAAFVLAMLSRVD-SNKNYPQVLCLSPTYELAIQTGEVAAKMAKFCPEIKL 180
Q++SG GKTA FVLA L +++ S+ N VL + T ELA Q + + +K+ P +K+
Sbjct: 83 CQAKSGMGKTAVFVLATLQQLEPSDNNTCHVLVMCHTRELAFQISKEYERFSKYMPTVKV 142
Query: 181 KYAVRGEELPRGSKI----TDHILIGTPGKMFDWGVKFGMFDMGKIKVFVLDEADVMINR 236
G + + + T HI++GTPG++ ++ ++ +K FVLDE D M+ +
Sbjct: 143 AVFFGGMAIQKDEETLKSGTPHIVVGTPGRILAL-IRNKKLNLKLLKHFVLDECDKMLEQ 201
Query: 237 QGHQDQCIRIHKCLPSTCQMMFFSATYGTAVMQFAEIIVSNPIIIRLLREEE-SLDNIKQ 295
+ I + P Q+M FSAT + + + +P+ + + E + +L ++Q
Sbjct: 202 LDMRRDVQEIFRSTPHGKQVMMFSATLSKDIRPVCKKFMQDPMEVYVDDEAKLTLHGLQQ 261
Query: 296 YYVKCKSAEDKYRAICNIYGVITIGQAIIFCHTRKTASWLSEKMSKDGHSVAVLSGELTV 355
+YV K E K + + + V+ Q +IF + + LS+ +++ + +T
Sbjct: 262 HYVNLKENE-KNKKLFELLDVLEFNQVVIFVKSVQRCVALSQLLTEQNFPAIGIHRGMTQ 320
Query: 356 EQRIAVLDRFRVGLEKVLITTNVLSRGIDVEQVTLVVNFDMPMDMNRKADCETYLHRIGR 415
E+R+ +F+ +++L+ TN+ RG+D+E+V +V N+DMP D +TYLHR+ R
Sbjct: 321 EERLNRYQQFKDFQKRILVATNLFGRGMDIERVNIVFNYDMP------EDSDTYLHRVAR 374
Query: 416 TGRFGKAGIAINLIDSPQAMEICTDIEAHFGKKIQLLDIE 455
GRFG G+AI + +I +++ F I L E
Sbjct: 375 AGRFGTKGLAITFVSDENDAKILNEVQDRFDVNISELPEE 414
>UniRef50_Q9KLE2 Cluster: ATP-dependent RNA helicase DeaD; n=35;
Vibrionales|Rep: ATP-dependent RNA helicase DeaD -
Vibrio cholerae
Length = 663
Score = 182 bits (444), Expect = 1e-44
Identities = 112/357 (31%), Positives = 189/357 (52%), Gaps = 14/357 (3%)
Query: 80 FEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMIAQSQSGTGKTAAFVLAML 139
F L L +L + MGF +P+ IQ A+P LL ++ + ++Q+GTGKTAAF L +L
Sbjct: 28 FSDLALNSAILSALTEMGFVSPTPIQAAAIPVLLEG--RDALGKAQTGTGKTAAFSLPLL 85
Query: 140 SRVDSNKNYPQVLCLSPTYELAIQTGEVAAKMAKFCPEIKLKYAVRGEEL---PRGSKIT 196
++++ ++ PQ + ++PT ELAIQ + + +K+ G + R K
Sbjct: 86 NKLNLSQYKPQAIVMAPTRELAIQVAAEIKNLGQNIKGLKVLEIYGGASILDQMRALKSG 145
Query: 197 DHILIGTPGKMFDWGVKFGMFDMGKIKVFVLDEADVMINRQGHQDQCIRIHKCLPSTCQM 256
HI++GTPG++ D + + + F+LDEAD M+ + G D I + P + Q
Sbjct: 146 AHIVVGTPGRVKDL-ITRDRLHLDECHTFILDEADEML-KMGFVDDVTWIMEQAPESAQR 203
Query: 257 MFFSATYGTAVMQFAEIIVSNPIIIRLLREEESLDNIKQYYVKCKSAEDKYRAICNIYGV 316
+ FSAT V + E + NP + + +++ ++Q Y K E K A+ +
Sbjct: 204 VLFSATMPPMVKEIVERFLRNPECVDVAGSNQTVAKVEQQYWVVKGVE-KDEAMARLLET 262
Query: 317 ITIGQAIIFCHTRKTASWLSEKMSKDGHSVAVLSGELTVEQRIAVLDRFRVGLEKVLITT 376
+I+F TR+ L++ + G A L G++ R +D + G+ +L+ T
Sbjct: 263 EETDASIVFVRTRQDTERLADWLCARGFKAAALHGDIPQSLRERTVDHIKQGVIDILVAT 322
Query: 377 NVLSRGIDVEQVTLVVNFDMPMDMNRKADCETYLHRIGRTGRFGKAGIAINLIDSPQ 433
+V++RG+DV ++T V N+D+P D+ E+Y+HRIGRTGR G+ G AI L+ + Q
Sbjct: 323 DVVARGLDVPRITHVYNYDIPFDV------ESYIHRIGRTGRAGRKGKAILLVRTNQ 373
>UniRef50_Q5QWG1 Cluster: ATP-dependent RNA helicase; n=1;
Idiomarina loihiensis|Rep: ATP-dependent RNA helicase -
Idiomarina loihiensis
Length = 474
Score = 182 bits (444), Expect = 1e-44
Identities = 115/353 (32%), Positives = 188/353 (53%), Gaps = 15/353 (4%)
Query: 80 FEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMIAQSQSGTGKTAAFVLAML 139
F L+L P LL + +G+ + +Q +LP +L + + + ++ +G+GKT AF L +L
Sbjct: 23 FNQLNLPPALLTRLDEIGYQQMTPVQSLSLPVILNNT--DAVVRADTGSGKTTAFALTLL 80
Query: 140 SRVDSNKNYPQVLCLSPTYELAIQTGEVAAKMAKFCPEIKLKYAVRGEELPRGSKITDH- 198
+++++ PQ L L PT ELA Q + K+AK IK+ GE + +H
Sbjct: 81 AKLEAKSFSPQALVLCPTRELAHQVADEVRKLAKSMLNIKILTLCGGEPSRIQTNSLEHG 140
Query: 199 --ILIGTPGKMFDWGVKFGMFDMGKIKVFVLDEADVMINRQGHQDQCIRIHKCLPSTCQM 256
+L+GTPG++ D ++ D+ + VLDEAD M+ G QD I K +P T Q
Sbjct: 141 AHVLVGTPGRVLDH-LEQRNVDLSMLTTLVLDEADRMLE-MGFQDSLNAIVKHIPKTRQT 198
Query: 257 MFFSATYGTAVMQFAEIIVSNPIIIRLLREEESLDNIKQYYVKCKSAEDKYRAICNIYGV 316
+ FSATY + AE + + I + +E++ I+Q + + ED + + N+ G
Sbjct: 199 LLFSATYPKNIAALAEQVTTKARNIEAI-QEQAKPQIEQLFYAMNN-EDSAQLVMNLLGD 256
Query: 317 ITIGQAIIFCHTRKTASWLSEKMSKDGHSVAVLSGELTVEQRIAVLDRFRVGLEKVLITT 376
++FC+T+ + + + SV L GEL + R + +F G +VLI T
Sbjct: 257 HQPENCLVFCNTKNEVKDIFNTLRANKFSVLALHGELEQKDRDQAIIQFSNGSARVLIAT 316
Query: 377 NVLSRGIDVEQVTLVVNFDMPMDMNRKADCETYLHRIGRTGRFGKAGIAINLI 429
+V SRG+D+ ++ LV++ +M D+ +T+ HRIGRTGR GK G+AI LI
Sbjct: 317 DVASRGLDIAELDLVISVNMAHDL------DTHTHRIGRTGRAGKEGVAITLI 363
>UniRef50_Q9UHI6 Cluster: Probable ATP-dependent RNA helicase DDX20;
n=24; Eumetazoa|Rep: Probable ATP-dependent RNA helicase
DDX20 - Homo sapiens (Human)
Length = 824
Score = 182 bits (444), Expect = 1e-44
Identities = 115/356 (32%), Positives = 186/356 (52%), Gaps = 18/356 (5%)
Query: 80 FEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMIAQSQSGTGKTAAFVLAML 139
FE+L L +L+G+ A GF PS +Q A+P L ++I Q++SGTGKT F L
Sbjct: 64 FESLLLSRPVLEGLRAAGFERPSPVQLKAIP--LGRCGLDLIVQAKSGTGKTCVFSTIAL 121
Query: 140 SRVDSNKNYPQVLCLSPTYELAIQTGEVAAKMAKFCPEIKLKYAVRGEELPRGSKITD-- 197
+ Q+L L+PT E+A+Q V + ++ + G L +
Sbjct: 122 DSLVLENLSTQILILAPTREIAVQIHSVITAIGIKMEGLECHVFIGGTPLSQDKTRLKKC 181
Query: 198 HILIGTPGKMFDWGVKFGMFDMGKIKVFVLDEADVMINRQGHQDQCIRIHKCLPSTCQMM 257
HI +G+PG++ ++ + G I++F+LDEAD ++ Q+Q I+ LP++ QM+
Sbjct: 182 HIAVGSPGRIKQL-IELDYLNPGSIRLFILDEADKLLEEGSFQEQINWIYSSLPASKQML 240
Query: 258 FFSATYGTAVMQFAEIIVSNPIIIRLLREEESLDNIKQYY-------VKCKSAEDKYRAI 310
SATY + + +P +RL + SL +KQYY + K E+K + +
Sbjct: 241 AVSATYPEFLANALTKYMRDPTFVRLNSSDPSLIGLKQYYKVVNSYPLAHKVFEEKTQHL 300
Query: 311 CNIYGVITIGQAIIFCHTRKTASWLSEKMSKDGHSVAVLSGELTVEQRIAVLDRFRVGLE 370
++ I QA++F + A L++ +S G +SG + QR+ + + +
Sbjct: 301 QELFSRIPFNQALVFSNLHSRAQHLADILSSKGFPAECISGNMNQNQRLDAMAKLKHFHC 360
Query: 371 KVLITTNVLSRGIDVEQVTLVVNFDMPMDMNRKADCETYLHRIGRTGRFGKAGIAI 426
+VLI+T++ SRGID E+V LVVN D+P+D ETY+HRIGR GRFG G+ +
Sbjct: 361 RVLISTDLTSRGIDAEKVNLVVNLDVPLDW------ETYMHRIGRAGRFGTLGLTV 410
>UniRef50_Q7VFA9 Cluster: ATP-dependent RNA helicase DeaD; n=6;
Helicobacteraceae|Rep: ATP-dependent RNA helicase DeaD -
Helicobacter hepaticus
Length = 530
Score = 182 bits (443), Expect = 2e-44
Identities = 118/379 (31%), Positives = 204/379 (53%), Gaps = 17/379 (4%)
Query: 80 FEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMIAQSQSGTGKTAAFVLAML 139
F+ LK +LKG+ GF+ PS +Q ++P +L +++IAQ+Q+GTGKTAAF + +L
Sbjct: 47 FDVFGLKDFVLKGIREAGFSTPSPVQSQSIPIILQG--KDLIAQAQTGTGKTAAFAIPIL 104
Query: 140 SRVDSNKNYPQVLCLSPTYELAIQTGEVAAKMAKFCPEIKLKYAVRGEELPRGSKITDH- 198
+ ++ NK+ + L ++PT ELA+Q E K+ +F IK G+ + R + +
Sbjct: 105 NTLNRNKDI-EALIITPTRELAMQISEEILKLGRF-GRIKTICMYGGQSIKRQCDLLEKK 162
Query: 199 --ILIGTPGKMFDWGVKFGMFDMGKIKVFVLDEADVMINRQGHQDQCIRIHKCLPSTCQM 256
+I TPG++ D ++ G ++ VLDE+D M++ G D I K LP+T Q
Sbjct: 163 PKAMIATPGRLLDH-LQNGRIAHFSPQIVVLDESDEMLD-MGFLDDIEEIFKFLPNTRQT 220
Query: 257 MFFSATYGTAVMQFAEIIVSNPIIIRLLREEESLDNIKQYYVKCKSAEDKYRAICNIYGV 316
+ FSAT + A I++ P +++ + + +I+Q Y E + AI +
Sbjct: 221 LLFSATMPEPIKALAMKILNEPAFVKITPTDVTNQDIEQQYYIINEGE-RDEAIVRLIET 279
Query: 317 ITIGQAIIFCHTRKTASWLSEKMSKDGHSVAVLSGELTVEQRIAVLDRFRVGLEKVLITT 376
++IIF +K A L+ +++ G L G++ R + FR ++L+ T
Sbjct: 280 QNPTKSIIFTRMKKEADALAIRLANRGFKAIALHGDMEQRDRREAIKAFRENKIEILVAT 339
Query: 377 NVLSRGIDVEQVTLVVNFDMPMDMNRKADCETYLHRIGRTGRFGKAGIAINLIDSPQAME 436
+V SRG+D+ V+ V N+ +P++ E+Y+HRIGRTGR GK G+A+ L +P +
Sbjct: 340 DVASRGLDISDVSHVFNYHIPLNP------ESYVHRIGRTGRAGKKGVAVTLA-TPLEYK 392
Query: 437 ICTDIEAHFGKKIQLLDIE 455
+ I+ K++L +I+
Sbjct: 393 DLSKIKQITKAKLKLCEIK 411
>UniRef50_A6CFZ8 Cluster: ATP-dependent RNA helicase; n=1;
Planctomyces maris DSM 8797|Rep: ATP-dependent RNA
helicase - Planctomyces maris DSM 8797
Length = 445
Score = 182 bits (442), Expect = 2e-44
Identities = 119/383 (31%), Positives = 206/383 (53%), Gaps = 25/383 (6%)
Query: 77 VKTFEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMIAQSQSGTGKTAAFVL 136
+ TF+ L L + K + + P+ IQ +P L ++++ +Q+GTGKTAA L
Sbjct: 1 MNTFQELKLIAPVQKALVEENYKIPTPIQAQTIPAALEG--RDVLGCAQTGTGKTAALAL 58
Query: 137 AMLSRVDSNK-----NYPQVLCLSPTYELAIQTGEVAAKMAKFCPEIKLKYAVRGEELPR 191
+L+++ N ++P L L+PT ELAIQ G+ + +KL+ + + +
Sbjct: 59 PILNQLGKNSRKSIPHHPLALVLAPTRELAIQIGD---SFDAYGRHLKLRSVLIYGGVGQ 115
Query: 192 GSKITD-----HILIGTPGKMFDWGVKFGMFDMGKIKVFVLDEADVMINRQGHQDQCIRI 246
G+++ HIL+ TPG++ D + G + +++VFVLDEAD M++ G RI
Sbjct: 116 GNQVKALKRGAHILVATPGRLLDL-MNQGHIKLNQLEVFVLDEADRMLD-MGFLPDLKRI 173
Query: 247 HKCLPSTCQMMFFSATYGTAVMQFAEIIVSNPIIIRLLREEESLDNIKQYYVKCKSAEDK 306
LP+ Q +FFSAT + + A ++S P+ + + + S++ I+Q + + K
Sbjct: 174 ITQLPTQRQSLFFSATLAPKITELAHSLLSKPVTVNVTPKTTSVEKIQQQLMFVER-NFK 232
Query: 307 YRAICNIYGVITIGQAIIFCHTRKTASWLSEKMSKDGHSVAVLSGELTVEQRIAVLDRFR 366
+ I G + +A++F T++TA+ LS+++ + G + G + R L+ FR
Sbjct: 233 QPLLQKILGGDEVERALVFTKTKRTANTLSQRLVRSGFKATAIHGNKSQGARQQALEAFR 292
Query: 367 VGLEKVLITTNVLSRGIDVEQVTLVVNFDMPMDMNRKADCETYLHRIGRTGRFGKAGIAI 426
+VL+ T+V +RGID++ +T V+NFD+P++ E Y+HRIGRTGR G GIAI
Sbjct: 293 RKQVQVLVATDVAARGIDIDGITHVINFDLPVEP------EAYVHRIGRTGRAGANGIAI 346
Query: 427 NLIDSPQAMEICTDIEAHFGKKI 449
+ + E+ IE G+K+
Sbjct: 347 SFCSESERKEL-RSIERLIGQKV 368
>UniRef50_A3ZXX1 Cluster: ATP-dependent RNA helicase; n=2;
Planctomycetaceae|Rep: ATP-dependent RNA helicase -
Blastopirellula marina DSM 3645
Length = 447
Score = 181 bits (440), Expect = 4e-44
Identities = 122/342 (35%), Positives = 189/342 (55%), Gaps = 22/342 (6%)
Query: 98 FNAPSKIQETALPTLLADPPQNMIAQSQSGTGKTAAFVLAMLSRVDSNKNY-----PQVL 152
++ P+ IQ A+P LL ++I +Q+GTGKTAAF L +L+++D +++ PQVL
Sbjct: 16 YHTPTPIQGQAIPHLLEG--SDLIGCAQTGTGKTAAFALPILNQLDLDRSRADACAPQVL 73
Query: 153 CLSPTYELAIQTGE---VAAKMAKFCPEIKLKYAVRGEELP-RGSKITDHILIGTPGKMF 208
LSPT ELA+Q + V + KF + + G+ R K H+ I TPG++
Sbjct: 74 VLSPTRELAVQIAQSFNVYGRNVKF--RLTTIFGGVGQNPQVRALKRGVHVAIATPGRLL 131
Query: 209 DWGVKFGMFDMGKIKVFVLDEADVMINRQGHQDQCIRIHKCLPSTCQMMFFSATYGTAVM 268
D + G D+ + K FVLDEAD M++ G I LP Q +FF+AT V
Sbjct: 132 DL-MDQGYVDLSQAKTFVLDEADRMLD-MGFMPALKTIVSKLPKQRQTIFFTATMPPKVA 189
Query: 269 QFAEIIVSNPIIIRLLREEESLDNIKQYYVKCKSAEDKYRAICNIYGVITIGQAIIFCHT 328
Q A +++NP+ I + E + + ++Q + S DK + + +G+ ++F T
Sbjct: 190 QLASGLLNNPVRIEVAPESTTAERVEQRLMYV-SQGDKRALLEHSLQAEGVGRTLVFTKT 248
Query: 329 RKTASWLSEKMSKDGHSVAVLSGELTVEQRIAVLDRFRVGLEKVLITTNVLSRGIDVEQV 388
+ A L+++++ G + G T +R L+ FR G +VL+ T+V +RGIDV+ V
Sbjct: 249 KHGADRLAKELNASGIRTDAIHGNKTQNKRNRALESFRSGRLQVLVATDVAARGIDVDGV 308
Query: 389 TLVVNFDMPMDMNRKADCETYLHRIGRTGRFGKAGIAINLID 430
T VVNFD+P+D E+Y+HRIGRTGR GK GIA++ D
Sbjct: 309 THVVNFDLPIDP------ESYVHRIGRTGRAGKEGIALSFCD 344
>UniRef50_UPI000065E01D Cluster: Homolog of Brachydanio rerio
"Eukaryotic translation initiation factor 4A, isoform
1A.; n=1; Takifugu rubripes|Rep: Homolog of Brachydanio
rerio "Eukaryotic translation initiation factor 4A,
isoform 1A. - Takifugu rubripes
Length = 357
Score = 180 bits (439), Expect = 5e-44
Identities = 90/231 (38%), Positives = 149/231 (64%), Gaps = 8/231 (3%)
Query: 222 IKVFVLDEADVMINRQGHQDQCIRIHKCLPSTCQMMFFSATYGTAVMQFAEIIVSNPIII 281
I++ VLDEAD M+ G +DQ I LP+ Q + SAT V++ ++ + +P+ I
Sbjct: 127 IRLLVLDEADQMLGN-GFKDQIHEIFCKLPTNVQAILLSATMPAHVLEATKMFMQDPVKI 185
Query: 282 RLLREEESLDNIKQYYVKCKSAEDKYRAICNIYGVITIGQAIIFCHTRKTASWLSEKMSK 341
+ REE +++ I+Q+Y+K ++ E K ++C +Y +TI QA+IF +TRK A WL++++
Sbjct: 186 LIKREELTMEGIQQFYIKTETEEKKLESLCGLYSTLTITQAVIFVNTRKKAEWLTQELMS 245
Query: 342 DGHSVAVLSGELTVEQRIAVLDRFRVGLEKVLITTNVLSRGIDVEQVTLVVNFDMPMDMN 401
+V+VL E+ +R + FR G +V ITT++LSRGIDV+QV+LV+NFD+P +
Sbjct: 246 KDFTVSVLHSEMGQSERDTTMKEFRSGSSRVFITTDLLSRGIDVQQVSLVINFDLPTKL- 304
Query: 402 RKADCETYLHRIGRTGRFGKAGIAINLIDSPQAMEICTDIEAHFGKKIQLL 452
E+Y+HRIGR+GRFG+ G+AIN++ + ++ + I+ + KI+ L
Sbjct: 305 -----ESYIHRIGRSGRFGRGGVAINMV-TEESQPMLAIIQNFYDFKIKEL 349
Score = 85.4 bits (202), Expect = 3e-15
Identities = 45/93 (48%), Positives = 61/93 (65%), Gaps = 2/93 (2%)
Query: 75 YSVKTFEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMIAQSQSGTGKTAAF 134
YSV +FE + L NLL+G++A GF PS IQ+ A+ + ++IAQSQSGTGKTA +
Sbjct: 18 YSVDSFEGMMLNENLLRGIFAYGFEKPSAIQQQAIVPCIKG--FDVIAQSQSGTGKTATY 75
Query: 135 VLAMLSRVDSNKNYPQVLCLSPTYELAIQTGEV 167
V+A L R+D K Q + L+PT ELA Q +V
Sbjct: 76 VIAALQRIDMMKEDTQAIILAPTRELANQIQKV 108
>UniRef50_Q1N6E2 Cluster: ATP-dependent RNA helicase; n=1;
Oceanobacter sp. RED65|Rep: ATP-dependent RNA helicase -
Oceanobacter sp. RED65
Length = 475
Score = 180 bits (439), Expect = 5e-44
Identities = 119/382 (31%), Positives = 214/382 (56%), Gaps = 25/382 (6%)
Query: 80 FEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMIAQSQSGTGKTAAFVLAML 139
F +L +++ + +GF+ S IQ ALP LA +++I ++Q+GTGKTAAF++ +L
Sbjct: 100 FHDFNLDARIMRSIQDLGFSYASPIQAEALPYTLAG--RDIIGKAQTGTGKTAAFLITVL 157
Query: 140 SRVDSNK------NYPQVLCLSPTYELAIQTGEVAAKMAKFCPEIKLKYAVRGEELPRGS 193
++ + K + P+ L L+PT ELA+Q + A ++K+ ++ + + G + +
Sbjct: 158 QKLLTVKPEERFASEPRALILAPTRELAMQIAKDADGLSKYA-DLNIVTVLGGVDYDKQK 216
Query: 194 KITDH----ILIGTPGKMFDWGVKFGMFDMGKIKVFVLDEADVMINRQGHQDQCIRIHKC 249
+ ++ +++ TPG++ D+ ++ G+ + ++++ V+DEAD M++ G RI +
Sbjct: 217 EQLENEVVDVVVATPGRLLDY-LQQGIVYLDQVEMLVIDEADRMLD-MGFIPDLKRIIRG 274
Query: 250 LP--STCQMMFFSATYGTAVMQFAEIIVSNPIIIRLLREEESLDNIKQYYVKCKSAEDKY 307
P S Q FSATY V+ +E P + + E + + +KQ ++ + + K
Sbjct: 275 TPEKSIRQTQLFSATYPYDVVALSESWTYKPEQVEIEPESVATETVKQQFISLQETQ-KD 333
Query: 308 RAICNIYGVITIGQAIIFCHTRKTASWLSEKMSKDGHSVAVLSGELTVEQRIAVLDRFRV 367
A+ G++IIF + R T L+++++K G +LSGE+ +R+ LDRF+
Sbjct: 334 NALIEYLEKENTGKSIIFANRRDTCRDLADRLNKRGVKALLLSGEVAQAKRMKTLDRFKS 393
Query: 368 GLEKVLITTNVLSRGIDVEQVTLVVNFDMPMDMNRKADCETYLHRIGRTGRFGKAGIAIN 427
VL+ T+V RGI V+ +T V N+++P D E Y+HRIGRTGR G++G AI
Sbjct: 394 EDGAVLVATDVAGRGIHVDGITHVFNYNLP------DDPEDYVHRIGRTGRAGESGTAIT 447
Query: 428 LIDSPQAMEICTDIEAHFGKKI 449
ID +A + D+E++ GKK+
Sbjct: 448 FIDEYEAYGL-MDLESYLGKKV 468
>UniRef50_Q11TW3 Cluster: Possible ATP-dependent RNA helicase; n=5;
Bacteria|Rep: Possible ATP-dependent RNA helicase -
Cytophaga hutchinsonii (strain ATCC 33406 / NCIMB 9469)
Length = 388
Score = 180 bits (438), Expect = 7e-44
Identities = 124/382 (32%), Positives = 202/382 (52%), Gaps = 19/382 (4%)
Query: 79 TFEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMIAQSQSGTGKTAAFVLAM 138
+F L L P +LK + +NAP IQE A+P +L ++++ +Q+G+GKTA+FVL +
Sbjct: 10 SFATLGLSPAILKALEKQFYNAPYPIQEQAIPAILKG--KDILGIAQTGSGKTASFVLPI 67
Query: 139 LSRVDSN---KN-YPQVLCLSPTYELAIQTGEVAAKMAKFCP-EIKLKYAVRGEEL-PRG 192
L + + KN + L L PT ELA+Q G+V + P +IK G + P+
Sbjct: 68 LQMLQTKPLGKNRHINALVLVPTRELAVQVGQVFQAFSNALPNKIKSLAVYGGVSINPQM 127
Query: 193 SKITD-HILIGTPGKMFDWGVKFGMFDMGKIKVFVLDEADVMINRQGHQDQCIRIHKCLP 251
++ ILI TPG++ D ++ + ++V VLDEAD M+N G +++ I K LP
Sbjct: 128 IQLQGVEILIATPGRLLDLVDSKAVY-LSDVEVLVLDEADKMLNL-GFKEEMANIFKLLP 185
Query: 252 STCQMMFFSATYGTAVMQFAEIIVSNPIIIRLLREEESLDNIKQYYVKCKSAEDKYRAIC 311
Q + FSAT G V E ++ +P+ I ++ EE+++D I+Q + A K +
Sbjct: 186 QKRQNLLFSATLGKDVDTITEFLLHDPVKIEIIAEEQNIDLIQQIAYAVEDAR-KGPLLR 244
Query: 312 NIYGVITIGQAIIFCHTRKTASWLSEKMSKDGHSVAVLSGELTVEQRIAVLDRFRVGLEK 371
+ + Q +IF + A + EK+ + A L + + R L +F+ G
Sbjct: 245 YLIKEQKMNQVLIFTSSVHRADAVVEKLKANNILAAALHSKKSQGARTEALKQFKAGNIH 304
Query: 372 VLITTNVLSRGIDVEQVTLVVNFDMPMDMNRKADCETYLHRIGRTGRFGKAGIAINLIDS 431
VL+ T+++SRGID+ + V+N+++P + Y+HRIGRTGR +G+AINLI
Sbjct: 305 VLVATDLMSRGIDIPFLPFVINYELPRSP------KDYIHRIGRTGRAEASGVAINLISE 358
Query: 432 PQAMEICTDIEAHFGKKIQLLD 453
+ I+ GKK+ L D
Sbjct: 359 EETHHFSV-IQKKMGKKVHLTD 379
>UniRef50_Q98RE0 Cluster: ATP-DEPENDENT RNA HELICASE; n=1;
Mycoplasma pulmonis|Rep: ATP-DEPENDENT RNA HELICASE -
Mycoplasma pulmonis
Length = 480
Score = 180 bits (437), Expect = 1e-43
Identities = 116/356 (32%), Positives = 192/356 (53%), Gaps = 13/356 (3%)
Query: 80 FEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMIAQSQSGTGKTAAFVLAML 139
F +++K +LK + +GF P+KIQE LP A +++I Q+Q+GTGKTAAF + +L
Sbjct: 3 FTQMNIKSEILKSLDEIGFEKPTKIQEAVLP--FAFEGKDIIGQAQTGTGKTAAFAIPIL 60
Query: 140 SRVDSNKNYPQVLCLSPTYELAIQTGEVAAKMAKF-CPEIKLKYA-VRGEELPRGSKITD 197
S +D + N Q L ++PT ELA Q + + K+ C +I L V E+
Sbjct: 61 SNLDCSINRIQHLVIAPTRELANQIYDQLNILGKYTCSKIALILGGVSYEKQKAALNSGV 120
Query: 198 HILIGTPGKMFDWGVKFGMFDMGKIKVFVLDEADVMINRQGHQDQCIRIHKCLPSTCQMM 257
+I++ TPG++ D + D+ IK F LDEAD ++ + G ++ I+I LP Q
Sbjct: 121 NIVVATPGRLEDLLAQ-NKIDLSHIKTFTLDEADELL-KIGFYNEIIKIMNKLPKKRQNF 178
Query: 258 FFSATYGTAVMQFAEIIVSNPIIIRLLREEESLDNIKQYYVKCKSAEDKYRAICNIYGVI 317
FF+AT+ + ++ I + +I + E+ + I Q +V S E+K +
Sbjct: 179 FFTATFDEKTKKLSQEITNEAKMISMSSGLETTEKIDQNFVVV-SEEEKLITLVKFLDFK 237
Query: 318 TIGQAIIFCHTRKTASWLSEKMSKDGHSVAVLSGELTVEQRIAVLDRFRVGLEKVLITTN 377
++IF T++ L+ + + G S + G++ + R +VL+RF+ +++ T+
Sbjct: 238 KPTASVIFGRTKRRVDELASALQELGFSAVGIQGDMVQKDRTSVLNRFKDQKVNIIVATD 297
Query: 378 VLSRGIDVEQVTLVVNFDMPMDMNRKADCETYLHRIGRTGRFGKAGIAINLIDSPQ 433
V++RGIDV V LV NFD+P ++ E Y HRIGRTGR + G AI+ + P+
Sbjct: 298 VMARGIDVSHVDLVFNFDLPEEI------EYYTHRIGRTGRGTRIGQAISFVKKPE 347
>UniRef50_Q62IF8 Cluster: ATP-dependent RNA helicase RhlE; n=59;
Betaproteobacteria|Rep: ATP-dependent RNA helicase RhlE
- Burkholderia mallei (Pseudomonas mallei)
Length = 482
Score = 180 bits (437), Expect = 1e-43
Identities = 119/384 (30%), Positives = 203/384 (52%), Gaps = 24/384 (6%)
Query: 79 TFEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMIAQSQSGTGKTAAFVLAM 138
TF+ L +LK + G+ P+ IQ A+P +L+ ++++ +Q+GTGKTA+F L +
Sbjct: 12 TFDQFGLAAEILKAIAEQGYTTPTPIQAKAIPVVLSG--RDVMGAAQTGTGKTASFSLPI 69
Query: 139 LSRVDSNKN-------YP-QVLCLSPTYELAIQTGEVAAKMAKFCPEIKLKYAVRGEEL- 189
+ R+ N +P + L L+PT ELA Q AK P ++ G ++
Sbjct: 70 IQRLLPQANTSASPARHPVRALILTPTRELADQVAANVHAYAKHTP-LRSAVVFGGVDMN 128
Query: 190 PRGSKITD--HILIGTPGKMFDWGVKFGMFDMGKIKVFVLDEADVMINRQGHQDQCIRIH 247
P+ +++ ILI TPG++ D V+ ++G++++ VLDEAD M++ G RI
Sbjct: 129 PQMAELRRGVEILIATPGRLLDH-VQQKTANLGQVQILVLDEADRMLD-MGFLPDLQRIL 186
Query: 248 KCLPSTCQMMFFSATYGTAVMQFAEIIVSNPIIIRLLREEESLDNIKQYYVKCKSAEDKY 307
LP Q + FSAT+ + + A + NP I + R + + Q DK
Sbjct: 187 NLLPKERQTLLFSATFSPEIKKLASTYLRNPQTIEVARSNAAASTVTQIVYDVAEG-DKQ 245
Query: 308 RAICNIYGVITIGQAIIFCHTRKTASWLSEKMSKDGHSVAVLSGELTVEQRIAVLDRFRV 367
A+ + ++ Q I+FC+++ AS L+ ++ +DG A + G+ + +R+ LD F+
Sbjct: 246 AAVVKLIRDRSLKQVIVFCNSKIGASRLARQIERDGIIAAAIHGDRSQSERMQALDAFKR 305
Query: 368 GLEKVLITTNVLSRGIDVEQVTLVVNFDMPMDMNRKADCETYLHRIGRTGRFGKAGIAIN 427
G + L+ T+V +RG+D+ ++ V+NFD+P + E Y+HRIGRTGR G +G A++
Sbjct: 306 GEIEALVATDVAARGLDIAELPAVINFDLPF------NAEDYVHRIGRTGRAGASGDALS 359
Query: 428 LIDSPQAMEICTDIEAHFGKKIQL 451
L SP + DIE + + L
Sbjct: 360 LC-SPNERKQLADIEKLIKRTLSL 382
>UniRef50_A6QC93 Cluster: ATP-independent RNA helicase DbpA; n=1;
Sulfurovum sp. NBC37-1|Rep: ATP-independent RNA helicase
DbpA - Sulfurovum sp. (strain NBC37-1)
Length = 453
Score = 180 bits (437), Expect = 1e-43
Identities = 110/354 (31%), Positives = 193/354 (54%), Gaps = 18/354 (5%)
Query: 89 LLKGVYAMGFNAPSKIQETALPTLLADPPQNMIAQSQSGTGKTAAFVLAMLSRVDSNKNY 148
LL + +GF ++IQ+ ++ +L ++++AQS++G+GKT AF + + D N
Sbjct: 14 LLGTLETLGFTTMTEIQQKSIGPILKG--KDILAQSKTGSGKTLAFGIPAVMGTDVKSNK 71
Query: 149 PQVLCLSPTYELAIQTGEVAAKMAKFCPEIKLKYAVRGEEL-PRGSKITD--HILIGTPG 205
PQ + ++PT ELA Q K+A + +K+ G L + + HILIGTPG
Sbjct: 72 PQTIVITPTRELAEQVAMELRKIAAYKANLKILTLYGGVPLRAQADSLAKGAHILIGTPG 131
Query: 206 KMFDWGVKFGMFDMGKIKVFVLDEADVMINRQGHQDQCIRIHKCLPSTCQMMFFSATYGT 265
++ D K G + IK VLDEAD M++ G ++ I+I +P Q + FSAT+
Sbjct: 132 RIQDHLAK-GTLTLESIKTLVLDEADRMLD-MGFYEEIIKIGSNMPKQKQTLLFSATFPP 189
Query: 266 AVMQFAEIIVSNPIIIRLLREEESLDNIKQYYVKCKSAEDKYRAICNIYGVITIGQAIIF 325
+ A+ ++ +P+ I++ +E++ + Y DK++ + + G +IF
Sbjct: 190 KIESLAKALLKDPLTIKVDTVQEAMKINELVY----ETPDKFKTLNALIGSYKPDSLLIF 245
Query: 326 CHTRKTASWLSEKMSKDGHSVAVLSGELTVEQRIAVLDRFRVGLEKVLITTNVLSRGIDV 385
C+T+ L++++ + GHSV + G+L +R + F +++++ T+V SRG+D+
Sbjct: 246 CNTKAEVISLADRLQQRGHSVIDIHGDLDQRERNEAVILFSNRSKRIMVATDVASRGLDI 305
Query: 386 EQVTLVVNFDMPMDMNRKADCETYLHRIGRTGRFGKAGIAINLIDSPQAMEICT 439
+ ++LV+N+D+P D E Y HRIGRTGR G+AI+L +P E C+
Sbjct: 306 KDISLVINYDLPFDK------EVYTHRIGRTGRADATGMAISLY-APNDSEKCS 352
>UniRef50_Q23U16 Cluster: DEAD/DEAH box helicase family protein;
n=1; Tetrahymena thermophila SB210|Rep: DEAD/DEAH box
helicase family protein - Tetrahymena thermophila SB210
Length = 475
Score = 179 bits (436), Expect = 1e-43
Identities = 92/263 (34%), Positives = 158/263 (60%), Gaps = 9/263 (3%)
Query: 199 ILIGTPGKMFDWGVKFGMFDMGKIKVFVLDEADVMINRQGHQDQCIRIHKCLPSTCQMMF 258
+++GTPG++ D K + +K+F+LDEAD M+ R G +DQ +I + LP Q+
Sbjct: 222 VVVGTPGRVLDLIQKKTLVT-DHLKLFILDEADEMLGR-GFKDQINKIFQNLPHDIQVAL 279
Query: 259 FSATYGTAVMQFAEIIVSNPIIIRLLREEESLDNIKQYYVKCKSAEDKYRAICNIYGVIT 318
FSAT +++ + + +P I + ++ +LD IKQ+Y+ E K+ + +Y I
Sbjct: 280 FSATMAPEILEITKQFMRDPATILVKNDDLTLDGIKQFYIALDKEEWKFDTLVELYNNIE 339
Query: 319 IGQAIIFCHTRKTASWLSEKMSKDGHSVAVLSGELTVEQRIAVLDRFRVGLEKVLITTNV 378
I QAII+C+T+K L +K+ + +V+ + GE+ + R ++ FR G +VLITT++
Sbjct: 340 IAQAIIYCNTKKRVDELRDKLIEKNMTVSAMHGEMDQQNRDLIMKEFRTGTSRVLITTDL 399
Query: 379 LSRGIDVEQVTLVVNFDMPMDMNRKADCETYLHRIGRTGRFGKAGIAINLIDSPQAMEIC 438
LSRGID+ QV LV+N+D+P+ E+Y+HRIGR+GRFG+ G+AIN + P +
Sbjct: 400 LSRGIDIHQVNLVINYDLPLKK------ESYIHRIGRSGRFGRKGVAINFV-VPADAKFL 452
Query: 439 TDIEAHFGKKIQLLDIEDAEEIE 461
+ E ++ +I + ++ ++ E
Sbjct: 453 KETEKYYQTQIVEMPLDVSQIYE 475
Score = 60.5 bits (140), Expect = 9e-08
Identities = 32/74 (43%), Positives = 47/74 (63%), Gaps = 2/74 (2%)
Query: 91 KGVYAMGFNAPSKIQETALPTLLADPPQNMIAQSQSGTGKTAAFVLAMLSRVDSNKNYPQ 150
+ V + GF PS IQ+ + ++ ++ IAQ+QSGTGKTA F +A L +D++ + Q
Sbjct: 47 QNVLSYGFEKPSPIQQCGIIPIIKG--KDTIAQAQSGTGKTATFSIATLQVIDTSSPHTQ 104
Query: 151 VLCLSPTYELAIQT 164
L L+PT ELA QT
Sbjct: 105 ALILAPTRELAQQT 118
>UniRef50_Q31EF0 Cluster: ATP-dependent RNA helicase; n=1;
Thiomicrospira crunogena XCL-2|Rep: ATP-dependent RNA
helicase - Thiomicrospira crunogena (strain XCL-2)
Length = 401
Score = 179 bits (435), Expect = 2e-43
Identities = 123/387 (31%), Positives = 202/387 (52%), Gaps = 19/387 (4%)
Query: 79 TFEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMIAQSQSGTGKTAAFVLAM 138
TFE L L P LL + ++ P+ IQ A+P +L ++++A + +GTGKTAAFVL
Sbjct: 2 TFEELDLDPKLLTAIEEQHYHKPTPIQAEAIPEMLLS--KDVLAGAATGTGKTAAFVLPA 59
Query: 139 LS-RVDSNK--NYPQVLCLSPTYELAIQTGEVAAKMAKFCPEIKLKYAVRGEELPRGSKI 195
L +D + P+VL L+PT ELA Q +V ++ CP + G + +I
Sbjct: 60 LQFLLDDPRPSRKPRVLILAPTRELAFQIHKVVKQLGAHCP-FESNVVTGGFASDKQLEI 118
Query: 196 TDH---ILIGTPGKMFDWGVKFGMFDMGKIKVFVLDEADVMINRQGHQDQCIRIHKCLPS 252
IL+ TPG++ + K D+ I++ ++DEAD M++ G + + + +P
Sbjct: 119 LQSKIDILVATPGRLLNIMSK-EFIDLSDIELLIIDEADRMLD-MGQGPDVLALIEAIPG 176
Query: 253 TCQMMFFSATY-GTAVMQFAEIIVSNPIIIRLLREEESLDNIKQYYVKCKSAEDKYRAIC 311
Q FSAT G+ + +FAE ++ +P II++ E + I+Q+ K +
Sbjct: 177 DFQAACFSATLAGSGITKFAEEVLDSPEIIQVNAPNEKSEQIQQWVYLANDKAHKKALLK 236
Query: 312 NIYGVITIGQAIIFCHTRKTASWLSEKMSKDGHSVAVLSGELTVEQRIAVLDRFRVGLEK 371
I T AI+FC+ + A L++ + + S VL G+ +R+ +F+ G K
Sbjct: 237 AILEDETCQSAIVFCNKKDRAIELADWLQNEHISSTVLHGDFIQAKRLEKTQKFKQGKIK 296
Query: 372 VLITTNVLSRGIDVEQVTLVVNFDMPMDMNRKADCETYLHRIGRTGRFGKAGIAINLIDS 431
VL+ T+V +RG+D+ VT V+N+D+P + D Y+HRIGRTGR + GIAINL++
Sbjct: 297 VLVATDVAARGLDILNVTHVINYDVPY----RGD--IYIHRIGRTGRAQQVGIAINLVER 350
Query: 432 PQAMEICTDIEAHFGKKIQLLDIEDAE 458
+ IE H + + + I+ E
Sbjct: 351 HDITNL-QRIEYHLQQSLPVSKIKGLE 376
>UniRef50_A7BCL2 Cluster: Putative uncharacterized protein; n=1;
Actinomyces odontolyticus ATCC 17982|Rep: Putative
uncharacterized protein - Actinomyces odontolyticus ATCC
17982
Length = 722
Score = 178 bits (434), Expect = 2e-43
Identities = 127/401 (31%), Positives = 207/401 (51%), Gaps = 28/401 (6%)
Query: 79 TFEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMIAQSQSGTGKTAAFVLAM 138
TF +L L +L V MGF P+ IQ A+P LL ++++ +Q+GTGKTAAF L +
Sbjct: 46 TFASLGLPEEILAAVTDMGFRVPTPIQAAAIPPLLE--LRDVVGIAQTGTGKTAAFGLPL 103
Query: 139 LSRVDSNKNYPQVLCLSPTYELAIQTGEVAAKMAKFCPEIKLKYAVRGEELPRGSKITD- 197
L+ VD+++ Q L L+PT ELA+Q+ + A + + G P G +I
Sbjct: 104 LAIVDADERNVQALVLAPTRELAMQSAQAIEDFAARTARLDVVPVYGGS--PYGPQIGAL 161
Query: 198 ----HILIGTPGKMFDWGVKFGMFDMGKIKVFVLDEADVMINRQGHQDQCIRIHKCLPST 253
+++GTPG++ D ++ G D+ +++ VLDEAD M+ R G + I P
Sbjct: 162 KRGAQVVVGTPGRVIDL-IEKGALDLSHVRMLVLDEADEML-RMGFAEDVETIASSAPDD 219
Query: 254 CQMMFFSATYGTAVMQFAEIIVSNPIIIRLLREEESLDNIKQYYVKCKSAEDKYRAICNI 313
FSAT A+ + A + +P+ + + E ++D I Q Y + K A+ +
Sbjct: 220 RLTALFSATMPAAIEKVAREHLKDPVKVAVSTESSTVDTIHQTYAVVPY-KHKIGALSRV 278
Query: 314 YGV----ITIGQ-----AIIFCHTRKTASWLSEKMSKDGHSVAVLSGELTVEQRIAVLDR 364
I GQ AI+F TR +S ++S G A +SG++ +R +++R
Sbjct: 279 LATRAQHIKEGQEEADAAIVFVRTRADVEEVSLELSSRGFRAAGISGDVAQTERERMVER 338
Query: 365 FRVGLEKVLITTNVLSRGIDVEQVTLVVNFDMPMDMNRKADCETYLHRIGRTGRFGKAGI 424
+ G VL+ T+V +RG+DVE+++LVVNFD+P + E Y+HRIGRTGR G+ G
Sbjct: 339 LKNGSLDVLVATDVAARGLDVERISLVVNFDVPREP------EAYVHRIGRTGRAGREGR 392
Query: 425 AINLIDSPQAMEICTDIEAHFGKKIQLLDIEDAEEIEKIGA 465
A+ +P+ IE G +++ ++I + + A
Sbjct: 393 ALTFF-TPREHGRLRRIEKLTGTEMEEVEIPSPAAVSEFRA 432
>UniRef50_A0RP33 Cluster: Putative ATP-dependent RNA helicase RhlE;
n=1; Campylobacter fetus subsp. fetus 82-40|Rep:
Putative ATP-dependent RNA helicase RhlE - Campylobacter
fetus subsp. fetus (strain 82-40)
Length = 624
Score = 178 bits (434), Expect = 2e-43
Identities = 119/377 (31%), Positives = 200/377 (53%), Gaps = 19/377 (5%)
Query: 80 FEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMIAQSQSGTGKTAAFVLAML 139
F L +L+ + + ++AP++IQ+ A+P ++ ++++A +++GTGKTAAF L +L
Sbjct: 3 FSDFDLSSAILEALKELNYDAPTQIQQVAIPAIMQG--KDILAGARTGTGKTAAFALPIL 60
Query: 140 SRVDS---NKNYPQ--VLCLSPTYELAIQTGEVAAKMAKFCPEIKLKYAVRGEELPRGSK 194
++ S NK PQ VL L PT ELA Q + AK P L P+
Sbjct: 61 EKLSSKERNKKRPQTRVLVLVPTRELANQVTQNIKSYAKKLPFKTLPVFGGVSSYPQIQA 120
Query: 195 ITD--HILIGTPGKMFDWGVKFGMFDMGKIKVFVLDEADVMINRQGHQDQCIRIHKCLPS 252
+ I++ TPG++ D ++ + + I V DEAD M + G +I K LP
Sbjct: 121 LKSGIDIVVATPGRLLDLALQNAL-SLEHIDTLVFDEADRMFD-MGFIHDIKQIVKMLPE 178
Query: 253 TCQMMFFSATYGTAVMQFAEIIVSNPIIIRLLREEESLDNIKQYYVKCKSAEDKYRAICN 312
Q + FSATY + VM ++ +P+ I++ + + NI Q + + K +
Sbjct: 179 KRQNLLFSATYPSEVMSLCNSMLKDPLRIQIEEQNSTALNIIQRVILV-DRDKKMELLNE 237
Query: 313 IYGVITIGQAIIFCHTRKTASWLSEKMSKDGHSVAVLSGELTVEQRIAVLDRFRVGLEKV 372
++GV +I QA++F T+++A S + G SVA L G+ + R L++F+ G K+
Sbjct: 238 VFGVESIDQALVFTRTKRSADKCSSYLHTLGFSVAALHGDKSQSVRSKTLEKFKNGKTKI 297
Query: 373 LITTNVLSRGIDVEQVTLVVNFDMPMDMNRKADCETYLHRIGRTGRFGKAGIAINLIDSP 432
L+ T++ +RG+D++++ V+N ++P N D Y+HRIGRTGR G G+AI+L+
Sbjct: 298 LVATDIAARGLDIKELPFVINLELP---NVPED---YVHRIGRTGRAGNDGVAISLV-CV 350
Query: 433 QAMEICTDIEAHFGKKI 449
+ DIE KK+
Sbjct: 351 DEFKFLIDIEKLIDKKL 367
>UniRef50_P44701 Cluster: ATP-dependent RNA helicase srmB homolog;
n=39; Gammaproteobacteria|Rep: ATP-dependent RNA
helicase srmB homolog - Haemophilus influenzae
Length = 439
Score = 178 bits (434), Expect = 2e-43
Identities = 111/364 (30%), Positives = 187/364 (51%), Gaps = 19/364 (5%)
Query: 76 SVKTFEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMIAQSQSGTGKTAAFV 135
++ FE L P LLK + G++ P+ IQ A+P + + +++ + +GTGKTAAF+
Sbjct: 2 NLSQFEQFDLSPELLKALEKKGYSRPTAIQMEAIPAAMEE--SDVLGSAPTGTGKTAAFL 59
Query: 136 LAMLSRV----DSNKNYPQVLCLSPTYELAIQTGEVAAKMAKFCPEIKLKYAVRGEELPR 191
L L + P++L L+PT ELA+Q E A ++A+F + + G
Sbjct: 60 LPALQHLLDYPRRKPGPPRILVLTPTRELAMQVAEQAEELAQFT-HLNIATITGGVAYQN 118
Query: 192 GSKI---TDHILIGTPGKMFDWGVKFGMFDMGKIKVFVLDEADVMINRQGHQDQCIRIHK 248
+ +++ TPG++ + +K FD +++ + DEAD M+ + G +I
Sbjct: 119 HGDVFNTNQDLVVATPGRLLQY-IKEENFDCRSVEMLIFDEADRML-QMGFGQDAEKIAA 176
Query: 249 CLPSTCQMMFFSATY-GTAVMQFAEIIVSNPIIIRLLREEESLDNIKQYYVKCKSAEDKY 307
Q + FSAT G ++ FAE ++++P+ + I Q+Y S E K
Sbjct: 177 ETRWRKQTLLFSATLEGELLVDFAERLLNDPVKVDAEPSRRERKKINQWYYHADSNEHKI 236
Query: 308 RAICNIYGVITIGQAIIFCHTRKTASWLSEKMSKDGHSVAVLSGELTVEQRIAVLDRFRV 367
+ + + + I+F R+ A LSE + K G A L GE+ QR +D+ +
Sbjct: 237 KLLARFIETEEVTRGIVFIRRREDARELSETLRKRGIRSAYLEGEMAQTQRNNAIDKLKS 296
Query: 368 GLEKVLITTNVLSRGIDVEQVTLVVNFDMPMDMNRKADCETYLHRIGRTGRFGKAGIAIN 427
G+ VL+ T+V +RGID++ V+ V+NFD+P +TYLHRIGRT R GK G A++
Sbjct: 297 GIVTVLVATDVAARGIDIDDVSHVMNFDLPY------SADTYLHRIGRTARAGKKGTAVS 350
Query: 428 LIDS 431
+++
Sbjct: 351 FVEA 354
>UniRef50_Q8EJQ5 Cluster: ATP-dependent RNA helicase rhlB; n=62;
Gammaproteobacteria|Rep: ATP-dependent RNA helicase rhlB
- Shewanella oneidensis
Length = 439
Score = 178 bits (434), Expect = 2e-43
Identities = 122/375 (32%), Positives = 205/375 (54%), Gaps = 26/375 (6%)
Query: 76 SVKTFEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMIAQSQSGTGKTAAFV 135
S + F L L P + + + GF + IQ +LP LL +++ Q+Q+GTGKT AF+
Sbjct: 7 SNQKFADLPLHPEVKQALAENGFEFCTPIQALSLPVLLQS--KDIAGQAQTGTGKTMAFL 64
Query: 136 LAMLSRVDSNK-------NYPQVLCLSPTYELAIQTGEVAAKMAKFCPEIKLKYAVRGEE 188
+A + + S+ N P+ + ++PT ELAIQ + A +AK +K+ GE
Sbjct: 65 VATFNHLLSSSIPEGRQLNQPRAIIMAPTRELAIQIAKDAILLAKHT-RLKVGIVYGGES 123
Query: 189 LPRGSKITDH---ILIGTPGKMFDWGVKFGMFDMGKIKVFVLDEADVMINRQGHQDQCIR 245
K+ D ILIGT G++ D+ V+ G+ ++ I+ VLDEAD M + +D IR
Sbjct: 124 YDVQRKVLDQGVDILIGTTGRIIDY-VRQGIINLNAIQAVVLDEADRMFDLGFIKD--IR 180
Query: 246 -IHKCLPSTCQM--MFFSATYGTAVMQFAEIIVSNPIIIRLLREEESLDNIKQYYVKCKS 302
+ + +P+ Q M FSAT V + A +++P+ + + EE++ NIK+ + S
Sbjct: 181 FLFRRMPNADQRLNMLFSATLSMKVQELAYDHMNDPVKVEIAPEEKTSKNIKEE-IFYPS 239
Query: 303 AEDKYRAICNIYGVITIGQAIIFCHTRKTASWLSEKMSKDGHSVAVLSGELTVEQRIAVL 362
EDK R + + +AI+F +T+ + L + DGH V +L+G++ ++RI +L
Sbjct: 240 QEDKMRLLLTLIEEDWPEKAIVFSNTKHSCENLWSWLEGDGHRVGLLTGDVPQKKRIRIL 299
Query: 363 DRFRVGLEKVLITTNVLSRGIDVEQVTLVVNFDMPMDMNRKADCETYLHRIGRTGRFGKA 422
++F G +L+ T+V +RG+ + V+ V N+D+P DCE Y+HRIGRTGR G
Sbjct: 300 EQFTQGQLDILVATDVAARGLHISDVSHVYNYDLP------DDCEDYVHRIGRTGRAGNK 353
Query: 423 GIAINLIDSPQAMEI 437
G++++ A+ +
Sbjct: 354 GVSVSFACEEYALNL 368
>UniRef50_A7HDE9 Cluster: DEAD/DEAH box helicase domain protein;
n=1; Anaeromyxobacter sp. Fw109-5|Rep: DEAD/DEAH box
helicase domain protein - Anaeromyxobacter sp. Fw109-5
Length = 680
Score = 177 bits (432), Expect = 4e-43
Identities = 111/395 (28%), Positives = 205/395 (51%), Gaps = 15/395 (3%)
Query: 72 SPLYSVKTFEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMIAQSQSGTGKT 131
S S +F+ L L + + + G+ P+ +Q + + +++I +S++GTGKT
Sbjct: 14 SDYVSQASFDELGLSEPVRRAIAEHGYERPTPVQVSTFRPVRDG--KDVIVRSKTGTGKT 71
Query: 132 AAFVLAMLSRVDSNKNYPQVLCLSPTYELAIQTGEVAAKMAKFCP-EIKLKY--AVRGEE 188
AAF + +L R+ + P L + PT ELAIQ + +AK + Y A GE+
Sbjct: 72 AAFAIPILERIADGRRRPSALVMCPTRELAIQVAQEFTALAKHRDLSVVAVYGGASMGEQ 131
Query: 189 LPRGSKITDHILIGTPGKMFDWGVKFGMFDMGKIKVFVLDEADVMINRQGHQDQCIRIHK 248
L + + I++GTPG+++D ++ + + V LDEAD M+N G ++ RI
Sbjct: 132 LQK-LEAGAEIIVGTPGRIYDH-IRRRTLKLDETMVCCLDEADEMLN-MGFFEEVTRILD 188
Query: 249 CLPSTCQMMFFSATYGTAVMQFAEIIVSNPIIIRLLREEESLDNIKQYYVKCKSAEDKYR 308
LP CQ + FSAT + Q +++P I L +E S++NI A K R
Sbjct: 189 NLPKDCQQLLFSATVPADIEQIIRDYLTDPETILLSGDEYSVENIHNVMYPAVDAYPKPR 248
Query: 309 AICNIYGVITIGQAIIFCHTRKTASWLSEKMSKDGHSVAVLSGELTVEQRIAVLDRFRVG 368
+ + + AI+FC+TR S ++ ++++G+ +L+G+L ++R V+ + + G
Sbjct: 249 NLLYMIEMEEPETAIVFCNTRNDTSLVAAVLNRNGYDAELLNGDLPQKERERVMAKVKRG 308
Query: 369 LEKVLITTNVLSRGIDVEQVTLVVNFDMPMDMNRKADCETYLHRIGRTGRFGKAGIAINL 428
+ ++ T++ +RGID+ +T V+N+ +P D +LHR+GRTGR GK G ++++
Sbjct: 309 EVRFMVATDIAARGIDISDLTHVINYSLP------EDPAVFLHRVGRTGRIGKKGTSLSI 362
Query: 429 IDSPQAMEICTDIEAHFGKKIQLLDIEDAEEIEKI 463
+ + + T ++ FG + + +E ++
Sbjct: 363 VSGAE-IHTLTALQKKFGIAFEEKKLPTPDEARRL 396
>UniRef50_Q3SF48 Cluster: DEAD/DEAH box helicase; n=6; cellular
organisms|Rep: DEAD/DEAH box helicase - Thiobacillus
denitrificans (strain ATCC 25259)
Length = 533
Score = 177 bits (431), Expect = 5e-43
Identities = 122/392 (31%), Positives = 208/392 (53%), Gaps = 20/392 (5%)
Query: 79 TFEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMIAQSQSGTGKTAAFVLAM 138
+F L L P +LK V A G+ + +Q+ A+P L+ +++ S +G+GKTAAF+L
Sbjct: 2 SFSELGLDPLILKSVLAAGYENATPVQQQAIPAALSGG--DLLVSSHTGSGKTAAFLLPS 59
Query: 139 LSRVDSNKNY----PQVLCLSPTYELAIQTGEVAA----KMAKFCPEIKLKYAVRGEELP 190
+ R+ + P+VL L+PT ELA+Q + A +M +F + A G +L
Sbjct: 60 IQRLLAEPAVKSIGPRVLVLTPTRELALQVEKAAMTYGKEMRRFRTACLVGGAPYGLQLK 119
Query: 191 RGSKITDHILIGTPGKMFDWGVKFGMFDMGKIKVFVLDEADVMINRQGHQDQCIRIHKCL 250
R S+ D +++ TPG++ D ++ G D +++V VLDEAD M++ G D I
Sbjct: 120 RLSQPVD-VVVATPGRLIDH-LERGKIDFSRLEVLVLDEADRMLD-MGFVDDIKAIAARC 176
Query: 251 PSTCQMMFFSATYGTAVMQFAEIIVSNPIIIRLLREEESLDNIKQYYVKCKSAEDKYRAI 310
P+ Q + FSAT V A + + I + I+Q + + + K R +
Sbjct: 177 PAERQTLLFSATLDGVVGNLARELTRDAQRIEIEAVPHKEAKIEQRLLFADNMDHKNRLL 236
Query: 311 CNIYGVITIGQAIIFCHTRKTASWLSEKMSKDGHSVAVLSGELTVEQRIAVLDRFRVGLE 370
+ + + QAI+F T+++ +S+ +++ G + L G++ QR L R R G
Sbjct: 237 DALLRDVEMVQAIVFASTKRSTEEISDLLAESGFASDALHGDMQQGQRNRALQRLREGRT 296
Query: 371 KVLITTNVLSRGIDVEQVTLVVNFDMPMDMNRKADCETYLHRIGRTGRFGKAGIAINLID 430
+VL+ T+V +RGIDV ++ V+NFD+P R+A E Y+HRIGRTGR G+ GIA++
Sbjct: 297 RVLVATDVAARGIDVASISHVINFDLP----RQA--EDYVHRIGRTGRAGRTGIAVSFAG 350
Query: 431 SPQAMEICTDIEAHFGKKIQLLDIEDAEEIEK 462
+ + +IE + G +I++ + E ++
Sbjct: 351 MREG-GLVKNIERYTGNRIEVHTLPGLEPTQR 381
>UniRef50_Q6MN50 Cluster: ATP-dependent RNA helicase; n=1;
Bdellovibrio bacteriovorus|Rep: ATP-dependent RNA
helicase - Bdellovibrio bacteriovorus
Length = 656
Score = 177 bits (430), Expect = 7e-43
Identities = 119/382 (31%), Positives = 195/382 (51%), Gaps = 22/382 (5%)
Query: 63 IEIQRKDPNSPLYSVKTFEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMIA 122
+ I + +PL +V FE+ L ++ + MGF P+ IQ ALP LLA + I
Sbjct: 29 LPIPERSLMTPLTTVDNFESFGLSAPVMAAMADMGFTTPTPIQRQALPILLAGA-NDFIG 87
Query: 123 QSQSGTGKTAAFVLAMLSRVDSNKNYPQVLCLSPTYELAIQTGEVAAKMAKFCPEIKLKY 182
+ +GTGKTAAF + ++ +DS Q L LSPT ELA+Q E + K +++
Sbjct: 88 LASTGTGKTAAFGIPLIENIDSTVKDTQALVLSPTRELALQVAEQLTLLGKK-KGVRVVT 146
Query: 183 AVRGEELPR---GSKITDHILIGTPGKMFDWGVKFGMFDMGKIKVFVLDEADVMINRQGH 239
G G K HI++ TPG++ D+ ++ M + +K VLDEAD M++ G
Sbjct: 147 IYGGASYRTQIDGIKRGAHIVVATPGRLVDF-LEQKMIKLQSVKTVVLDEADEMLS-MGF 204
Query: 240 QDQCIRIHKC--------LPSTCQMMFFSATYGTAVMQFAEIIVSNPIIIRLLREEESLD 291
++ I + + C+ FSAT + V + + NP + + + + D
Sbjct: 205 KEALETILSATQPDDSDSVRAACRTWLFSATMSSEVRRLTSTYLENPETVSVNKVGGTAD 264
Query: 292 NIKQYYVKCKSAEDKYRAICNIYGVITIGQAIIFCHTRKTASWLSEKMSKDGHSVAVLSG 351
I+Q Y K++ K I + + IIFC T+ + L++ +++ G L G
Sbjct: 265 TIEQVYYTVKNSY-KTEVIGRLLQTLPEFYGIIFCQTKMEVAELADVLTQRGFPADSLHG 323
Query: 352 ELTVEQRIAVLDRFRVGLEKVLITTNVLSRGIDVEQVTLVVNFDMPMDMNRKADCETYLH 411
+ + ++R A L +F+ KV++ T+V +RG+D++ +T VVN +P D E+Y+H
Sbjct: 324 DKSQQEREATLKKFKQRQVKVIVATDVAARGLDIKDLTHVVNHSLPW------DSESYVH 377
Query: 412 RIGRTGRFGKAGIAINLIDSPQ 433
RIGRTGR G+ G AI L++ Q
Sbjct: 378 RIGRTGRNGQKGTAITLVNPEQ 399
>UniRef50_A3EUK2 Cluster: Superfamily II DNA and RNA helicase; n=1;
Leptospirillum sp. Group II UBA|Rep: Superfamily II DNA
and RNA helicase - Leptospirillum sp. Group II UBA
Length = 444
Score = 176 bits (429), Expect = 9e-43
Identities = 119/378 (31%), Positives = 195/378 (51%), Gaps = 18/378 (4%)
Query: 79 TFEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMIAQSQSGTGKTAAFVLAM 138
TFEAL L P +L+ + +G +P+ IQ+ ++P ++ ++++ +Q+GTGKT F+L +
Sbjct: 2 TFEALGLSPEILRALNDLGHASPTPIQKQSIPHVIDG--RDLLGIAQTGTGKTGGFLLPV 59
Query: 139 LSRVDSNKNYP---QVLCLSPTYELAIQTGEVAAKMAKFCPE--IKLKYAVRGEELPRGS 193
L ++ + + + L LSPT ELA Q + A AK+ + L V R
Sbjct: 60 LHKIAEGRRHGIRNRALVLSPTRELATQIHQAAKDYAKYLHTNAVLLVGGVDFIRQERNL 119
Query: 194 KITDHILIGTPGKMFDWGVKFGMFDMGKIKVFVLDEADVMINRQGHQDQCIRIHKCLPST 253
K I++ TPG++ D V+ + + ++DEAD M++ G I + LP
Sbjct: 120 KRNWDIVVATPGRLLDH-VRRNNLTLANTSLVIIDEADRMLD-MGFLPDINTIVRQLPKG 177
Query: 254 CQMMFFSATYGTAVMQFAEIIVSNPIIIRLLREEESLDNIKQYYVKCKSAEDKYRAICNI 313
Q + FSAT + + A ++ +I+R+ E + D+I Q ++ K + +
Sbjct: 178 RQSLLFSATCPPRIQELAATFQNDAVIVRVEPERKGSDHIHQEWITVSHGSQKLGLLKKV 237
Query: 314 Y--GVITIGQAIIFCHTRKTASWLSEKMSKDGHSVAVLSGELTVEQRIAVLDRFRVGLEK 371
G GQ IIF T+++A LS ++ G+ L G+ + R VL RFR G K
Sbjct: 238 LDEGKSETGQVIIFTRTKRSAEDLSIALNDAGYPSDALHGDKSQPVRNRVLSRFRRGDLK 297
Query: 372 VLITTNVLSRGIDVEQVTLVVNFDMPMDMNRKADCETYLHRIGRTGRFGKAGIAINLIDS 431
VL+ T+V +RG+D++ +T V+N+D+P E Y+HRIGRTGR G+ G A++
Sbjct: 298 VLVATDVAARGLDIDGITHVINYDLPQ------TAEDYVHRIGRTGRAGRTGRALSFF-H 350
Query: 432 PQAMEICTDIEAHFGKKI 449
P +I IE GK I
Sbjct: 351 PADRDIVRSIETMAGKPI 368
>UniRef50_Q8F0Q7 Cluster: ATP-dependent RNA helicase; n=4;
Leptospira|Rep: ATP-dependent RNA helicase - Leptospira
interrogans
Length = 540
Score = 176 bits (428), Expect = 1e-42
Identities = 121/383 (31%), Positives = 200/383 (52%), Gaps = 19/383 (4%)
Query: 80 FEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMIAQSQSGTGKTAAFVLAML 139
FE L + P LL + +G+ + IQE ++P L +++ +Q+GTGKT AF++ ++
Sbjct: 3 FEELSIHPKLLSAIQEIGYTELTPIQEKSIPHGLEG--KDITGLAQTGTGKTVAFLIPVI 60
Query: 140 SRVDSNKNYPQV--LCLSPTYELAIQTGEVAAKMAKFCPEIKLKYAVRGEELPRGSKITD 197
+ K + L L+PT EL +Q E A K+ K I+ + G + +K +
Sbjct: 61 HNI-LTKGIQGIAALVLAPTRELTMQIAEEAKKLLKHSEGIRSVPIIGGTDYKSQNKDLE 119
Query: 198 H---ILIGTPGKMFDWGVKFGMFDMGKIKVFVLDEADVMINRQGHQDQCIRIHKCLPSTC 254
I++ TPG++ D +K G D+ ++ FVLDEAD M++ QD +HKC +
Sbjct: 120 GLNGIIVATPGRLIDM-IKSGSIDISNVEFFVLDEADRMLDMGFIQDIRWLLHKC-KNRK 177
Query: 255 QMMFFSATYGTAVMQFAEIIVSNPIIIRLLREEESLDNIKQYYVKCKSAEDKYRAICN-I 313
Q + +SAT VM+ A ++ P+ I++ E+ + I Q V E+K + N I
Sbjct: 178 QTLLYSATLSVEVMRLAYRFLNEPVEIQINPEKIITERIDQKIVHL-GREEKIPYMTNLI 236
Query: 314 YGVITIGQAIIFCHTRKTASWLSEKMSKDGHSVAVLSGELTVEQRIAVLDRFRVGLEKVL 373
GQ IIF + + + + K G V +S EL ++R+ +L F+ G + +
Sbjct: 237 INSKEEGQGIIFTNYKANIPKIVYTLRKYGVPVTGISSELDQKKRLRLLRDFKSGKYRYM 296
Query: 374 ITTNVLSRGIDVEQVTLVVNFDMPMDMNRKADCETYLHRIGRTGRFGKAGIAINLIDSPQ 433
+ T+V SRGIDVE + +V N+D+P D E Y+HRIGRT R G+ G AI
Sbjct: 297 VATDVASRGIDVENIDIVYNYDLPQ------DTENYVHRIGRTARAGRKGKAIGFCSESD 350
Query: 434 AMEICTDIEAHFGKKIQLLDIED 456
+E+ IE + +KI++L++ +
Sbjct: 351 YVEL-EKIEKYLKQKIEILEVNE 372
>UniRef50_A0BPV0 Cluster: Chromosome undetermined scaffold_12, whole
genome shotgun sequence; n=4; Paramecium
tetraurelia|Rep: Chromosome undetermined scaffold_12,
whole genome shotgun sequence - Paramecium tetraurelia
Length = 471
Score = 176 bits (428), Expect = 1e-42
Identities = 122/380 (32%), Positives = 193/380 (50%), Gaps = 23/380 (6%)
Query: 68 KDPNSPLYSVKTFEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMIAQSQSG 127
KD Y+V F+ LK LL+ V GF P+++Q +L L + +I Q+++G
Sbjct: 63 KDIQIDNYNVSQFKNFGLKEELLRAVKEAGFEHPTRVQAESLTNALLG--EQLICQAKAG 120
Query: 128 TGKTAAFVLAMLSRVDSNKNYPQVLCLSPTYELAIQTGEVAAKMAKFCPEIKLKYAVRGE 187
TGKTA FVL +L+ +++ N + L ++ T ELA Q + ++ KF +K++ G
Sbjct: 121 TGKTAVFVLTVLNTINTESNKVECLVITHTRELAQQARDEFLRLGKFMKSVKVECFYGGG 180
Query: 188 E-----LPRGSKITDHILIGTPGKMFDWGVKFGMFDMGKIKVFVLDEADVMINRQGHQDQ 242
E + + I++GTPG++ D + + ++K F+LDEAD MI +
Sbjct: 181 EPVSVNIQTIETVKPQIVVGTPGRLKDLICERKALKVDRLKYFILDEADTMIEDLNMRKD 240
Query: 243 CIRIHKCLPSTCQMMFFSATY-GTAVMQFAEIIVSNPII--IRLLREEESLDNIKQYYVK 299
I P Q M FSAT+ ++ I N I I + E+ LD +KQYY+K
Sbjct: 241 IQDIFLKSPQEKQFMAFSATFTESSRTSLKRFIADNKHIYEITIKPEQLFLDKLKQYYMK 300
Query: 300 CKSAEDKYRAICNIYGVITIGQAIIFCHTRKTASWLSEKMSKDG-HSVAVLSGELTV--- 355
A K+ + I + Q IIF + + A L ++ K G SV L G +
Sbjct: 301 MPEAL-KFHYLRQILNTCKLNQCIIFVKSSEKADALVTELKKKGEESVRQLYGGNRLGPD 359
Query: 356 --EQRIAVLDRFRVGLEKVLITTNVLSRGIDVEQVTLVVNFDMPMDMNRKADCETYLHRI 413
+ R ++FR G ++L+ TN++ RGID+++V V+NFDMP + ETYLHR+
Sbjct: 360 HQKMRQKTYEQFRNGHFRLLVATNLMGRGIDIDKVNYVINFDMPDSL------ETYLHRV 413
Query: 414 GRTGRFGKAGIAINLIDSPQ 433
GR GR G+AI+ + S +
Sbjct: 414 GRAGRQETNGVAISFVKSEE 433
>UniRef50_Q7A4G0 Cluster: Probable DEAD-box ATP-dependent RNA
helicase SA1885; n=13; Staphylococcus|Rep: Probable
DEAD-box ATP-dependent RNA helicase SA1885 -
Staphylococcus aureus (strain N315)
Length = 506
Score = 175 bits (427), Expect = 2e-42
Identities = 120/387 (31%), Positives = 198/387 (51%), Gaps = 16/387 (4%)
Query: 77 VKTFEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMIAQSQSGTGKTAAFVL 136
++ F+ L + N ++ + +MGF P+ IQ+ ++P L +++ Q+Q+GTGKT AF +
Sbjct: 1 MQNFKELGISDNTVQSLESMGFKEPTPIQKDSIPYALQGI--DILGQAQTGTGKTGAFGI 58
Query: 137 AMLSRVDSNKNYPQVLCLSPTYELAIQTGEVAAKMAKFCPEIKLKYAVRGEELPRGSKIT 196
++ +V K Q L L+PT ELA+Q E + ++ +++ G + R K
Sbjct: 59 PLIEKV-VGKQGVQSLILAPTRELAMQVAEQLREFSRG-QGVQVVTVFGGMPIERQIKAL 116
Query: 197 D---HILIGTPGKMFDWGVKFGMFDMGKIKVFVLDEADVMINRQGHQDQCIRIHKCLPST 253
I++GTPG++ D + + G I +LDEAD M+N D + K
Sbjct: 117 KKGPQIVVGTPGRVIDHLNRRTLKTDG-IHTLILDEADEMMNMGFIDDMRFIMDKIPAVQ 175
Query: 254 CQMMFFSATYGTAVMQFAEIIVSNPIIIRLLREEESLDNIKQYYVKCKSAEDKYRAICNI 313
Q M FSAT A+ + + +P II+ + E S I+++Y K E K+ N
Sbjct: 176 RQTMLFSATMPKAIQALVQQFMKSPKIIKTMNNEMSDPQIEEFYTIVKELE-KFDTFTNF 234
Query: 314 YGVITIGQAIIFCHTRKTASWLSEKMSKDGHSVAVLSGELTVEQRIAVLDRFRVGLEKVL 373
V AI+F T++ L+ + G+ L G++T +R+ VL +F+ +L
Sbjct: 235 LDVHQPELAIVFGRTKRRVDELTSALISKGYKAEGLHGDITQAKRLEVLKKFKNDQINIL 294
Query: 374 ITTNVLSRGIDVEQVTLVVNFDMPMDMNRKADCETYLHRIGRTGRFGKAGIAINLIDSPQ 433
+ T+V +RG+D+ V+ V NFD+P D E+Y HRIGRTGR GK GIA+ + +P
Sbjct: 295 VATDVAARGLDISGVSHVYNFDIPQ------DTESYTHRIGRTGRAGKEGIAVTFV-NPI 347
Query: 434 AMEICTDIEAHFGKKIQLLDIEDAEEI 460
M+ IE G+K+ L +E+
Sbjct: 348 EMDYIRQIEDANGRKMSALRPPHRKEV 374
>UniRef50_Q56XG6 Cluster: DEAD-box ATP-dependent RNA helicase 15;
n=27; Eukaryota|Rep: DEAD-box ATP-dependent RNA helicase
15 - Arabidopsis thaliana (Mouse-ear cress)
Length = 427
Score = 175 bits (426), Expect = 2e-42
Identities = 109/379 (28%), Positives = 193/379 (50%), Gaps = 17/379 (4%)
Query: 80 FEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMIAQSQSGTGKTAAFVLAML 139
F LKP LL+ + GF PS++Q +P + ++I Q++SG GKTA FVL+ L
Sbjct: 48 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILG--MDVICQAKSGMGKTAVFVLSTL 105
Query: 140 SRVDSNKNYPQVLCLSPTYELAIQTGEVAAKMAKFCPEIKLKYAVRGEELPRGSKITD-- 197
+++ + L L T ELA Q + + + P+ K+ G + +
Sbjct: 106 QQIEPSPGQVSALVLCHTRELAYQICNEFVRFSTYLPDTKVSVFYGGVNIKIHKDLLKNE 165
Query: 198 --HILIGTPGKMFDWGVKFGMFDMGKIKVFVLDEADVMINRQGHQDQCIRIHKCLPSTCQ 255
HI++GTPG++ + + + ++ F+LDE D M+ + I K P Q
Sbjct: 166 CPHIVVGTPGRVLALAREKDL-SLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQ 224
Query: 256 MMFFSATYGTAVMQFAEIIVSNPIIIRLLREEE-SLDNIKQYYVKCKSAEDKYRAICNIY 314
+M FSAT + + + +P+ I + E + +L + Q+Y+K E K R + ++
Sbjct: 225 VMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSEME-KTRKLNDLL 283
Query: 315 GVITIGQAIIFCHTRKTASWLSEKMSKDGH-SVAVLSGELTVEQRIAVLDRFRVGLEKVL 373
+ Q +IF + A+ L++ + + S+ + SG ++ E+R+ F+ G +++L
Sbjct: 284 DALDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSG-MSQEERLTRYKSFKEGHKRIL 342
Query: 374 ITTNVLSRGIDVEQVTLVVNFDMPMDMNRKADCETYLHRIGRTGRFGKAGIAINLIDSPQ 433
+ T+++ RGID+E+V +V+N+DMP +TYLHR+GR GRFG G+AI + S
Sbjct: 343 VATDLVGRGIDIERVNIVINYDMP------DSADTYLHRVGRAGRFGTKGLAITFVASAS 396
Query: 434 AMEICTDIEAHFGKKIQLL 452
E+ ++ F I+ L
Sbjct: 397 DSEVLNQVQERFEVDIKEL 415
>UniRef50_Q11U28 Cluster: ATP-dependent RNA helicase protein; n=4;
Bacteria|Rep: ATP-dependent RNA helicase protein -
Cytophaga hutchinsonii (strain ATCC 33406 / NCIMB 9469)
Length = 413
Score = 175 bits (425), Expect = 3e-42
Identities = 123/382 (32%), Positives = 198/382 (51%), Gaps = 20/382 (5%)
Query: 80 FEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMIAQSQSGTGKTAAFVLAML 139
FE+ L P + K + GFN P+ IQ ++P +LA ++++A +Q+GTGKTAAFV+ +L
Sbjct: 3 FESYDLAPGIKKSLAEAGFNRPTDIQFKSIPPILAG--EDVLAIAQTGTGKTAAFVIPVL 60
Query: 140 SRVDSNKN--YPQVLCL--SPTYELAIQTGEVAAKMAKFCPEIKLKYAVRGEELPRGSKI 195
+ + + K + + CL +PT ELA+Q EV K+ + ++ G E
Sbjct: 61 NTLINVKKSEHTDISCLVMAPTRELAVQISEVFKKIGAYT-RLRTVCITGGVEQEAQIAA 119
Query: 196 TDH---ILIGTPGKMFDWGVKFGMFDMGKIKVFVLDEADVMINRQGHQDQCIRIHKCLPS 252
D+ IL+ TPG+MFD + + ++K+ VLDEAD M++ G + K LP+
Sbjct: 120 ADYGIDILVATPGRMFDL-IYQKHIKITRVKILVLDEADHMLDL-GFIKDIQDVKKFLPA 177
Query: 253 TCQMMFFSATYGTAVMQFAEIIVSNPIIIRLLREEESLDNIKQYYVKCKSAEDKYRAICN 312
Q +FFSAT + + A +V NPI I++ ++ NI + V +DK +
Sbjct: 178 RHQTLFFSATINEEIKKLAYSLVKNPIRIQIAPKDRVSKNIT-HSVAFIGMDDKRFFLER 236
Query: 313 IYGVITIGQAIIFCHTRKTASWLSEKMSKDGHSVAVLSGELTVEQRIAVLDRFRVGLEKV 372
+ + I+F T+ A + M + G + G + R A +D F+ G V
Sbjct: 237 LLKEHPESKVIVFVRTQVRADRVQAAMERVGLKSVTMHGGKEQQARDAAMDAFKNGTVHV 296
Query: 373 LITTNVLSRGIDVEQVTLVVNFDMPMDMNRKADCETYLHRIGRTGRFGKAGIAINLIDSP 432
LI T++ +RGID+ V VVN+DMP E Y+HR+GRTGR G AI+ S
Sbjct: 297 LIATDISARGIDIAGVEYVVNYDMP------EVAENYVHRVGRTGRGVSKGFAISFC-SM 349
Query: 433 QAMEICTDIEAHFGKKIQLLDI 454
+ + ++E GK+I +++I
Sbjct: 350 EEKPVLDEVEEFLGKEINVIEI 371
>UniRef50_A6Q8Y9 Cluster: ATP-dependent RNA helicase, DEAD-box
family; n=6; Bacteria|Rep: ATP-dependent RNA helicase,
DEAD-box family - Sulfurovum sp. (strain NBC37-1)
Length = 492
Score = 175 bits (425), Expect = 3e-42
Identities = 126/389 (32%), Positives = 198/389 (50%), Gaps = 27/389 (6%)
Query: 80 FEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMIAQSQSGTGKTAAFVLAML 139
F +LK + V GF PS +Q+ A+P +L +MIAQ+Q+GTGKTAAF L ++
Sbjct: 3 FTDFNLKDTIQAAVAEAGFKEPSPVQKDAIPLVLEG--HDMIAQAQTGTGKTAAFGLPIM 60
Query: 140 SRVDSNKNYPQVLCLSPTYELAIQTGEVAAKMAKFCP-EIKLKYA--VRGEELPRGSKIT 196
S + ++ + + L + PT ELA+Q + + K + Y G+++ R + +
Sbjct: 61 SMMKADGSV-EGLVIVPTRELAMQVSDELFRFGKLSGLKTATVYGGTAYGKQIERIKQAS 119
Query: 197 DHILIGTPGKMFDWGVKFGMFDMGKIKV----FVLDEADVMINRQGHQDQCIRIHKCLPS 252
I++ TPG++ D + GKIK+ VLDEAD M++ G D+ I LP
Sbjct: 120 --IVVATPGRLQD------LLMSGKIKLNPHFVVLDEADEMLD-MGFLDEIKNIFTFLPK 170
Query: 253 TCQMMFFSATYGTAVMQFAEIIVSNPIIIRLLREEESLDNIKQYYVKCKSAEDKYRAICN 312
Q + FSAT + + AE I++NP + + + E + I QYY + E + A+
Sbjct: 171 ERQTLMFSATMPNGIRKLAEQILNNPKTVSITKSESTNSKITQYYYVVQERE-RDDALVR 229
Query: 313 IYGVITIGQAIIFCHTRKTASWLSEKMSKDGHSVAVLSGELTVEQRIAVLDRFRVGLEKV 372
+ + IIFC +K L ++ G V+ L G++ +QR + F+ G +
Sbjct: 230 LIDYKNPEKCIIFCRMKKEVDRLVAHLTAQGFKVSGLHGDMEQKQREVTIRAFKQGGIDI 289
Query: 373 LITTNVLSRGIDVEQVTLVVNFDMPMDMNRKADCETYLHRIGRTGRFGKAGIAINLIDSP 432
+ T+V +RG+DV VT V N+ +P D E+Y+HRIGRTGR GK G AI L+ SP
Sbjct: 290 FVATDVAARGLDVNDVTHVFNYHIPF------DSESYVHRIGRTGRAGKTGEAITLV-SP 342
Query: 433 QAMEICTDIEAHFGKKIQLLDIEDAEEIE 461
+ IE G K+ I E++
Sbjct: 343 NELRTIKRIEKDVGTKMTTQVIPTRIEVQ 371
>UniRef50_Q89M45 Cluster: ATP-dependent RNA helicase; n=29; cellular
organisms|Rep: ATP-dependent RNA helicase -
Bradyrhizobium japonicum
Length = 500
Score = 174 bits (424), Expect = 4e-42
Identities = 119/379 (31%), Positives = 203/379 (53%), Gaps = 20/379 (5%)
Query: 79 TFEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMIAQSQSGTGKTAAFVLAM 138
+F L L +L V A G+ P+ IQE A+P +LA ++++ +Q+GTGKTAAFVL M
Sbjct: 2 SFSNLGLSEKVLAAVAATGYTTPTPIQEQAIPHVLAR--KDVLGIAQTGTGKTAAFVLPM 59
Query: 139 LSRVDSNK---NYPQVLCLSPTYELAIQTGEVAAKMAKFCPEIKLKYAVRGEEL-PRGSK 194
L+ ++ + P+ L L PT ELA Q E + ++ + + G + +K
Sbjct: 60 LTILEKGRARARMPRTLILEPTRELAAQVKENFDRYGAG-QKLNVALLIGGVSFGDQDAK 118
Query: 195 ITD--HILIGTPGKMFDWGVKFGMFDMGKIKVFVLDEADVMINRQGHQDQCIRIHKCLPS 252
+T +LI TPG++ D + G+ G +++ V+DEAD M++ G RI K +P
Sbjct: 119 LTRGVDVLIATPGRLLDHTERGGLLLTG-VELLVIDEADRMLD-MGFIPDIERICKLVPF 176
Query: 253 TCQMMFFSATYGTAVMQFAEIIVSNPIIIRLLREEESLDNIKQYYVKC-KSAEDKYRAIC 311
T Q +FF+AT + + E + NP + + + + + Q V K A +K +
Sbjct: 177 TRQTLFFTATMPPEIRRITETFLHNPQKVEVSKPATTAVTVTQSQVPAGKKAHEKRELLR 236
Query: 312 NIYGVIT-IGQAIIFCHTRKTASWLSEKMSKDGHSVAVLSGELTVEQRIAVLDRFRVGLE 370
+ + AIIFC+ ++ + + + + K G SV L G++ R+A L++FR G
Sbjct: 237 RLLREAKDLKNAIIFCNRKREVAIVHKSLQKHGFSVGALHGDMDQPARMAALEQFRKGEL 296
Query: 371 KVLITTNVLSRGIDVEQVTLVVNFDMPMDMNRKADCETYLHRIGRTGRFGKAGIAINLID 430
+L+ ++V +RG+D+ +V+ V NFD+P + Y+HR+GRTGR G++G AI+++
Sbjct: 297 PLLVASDVAARGLDIPEVSHVFNFDVPHHP------DDYVHRVGRTGRAGRSGTAISIV- 349
Query: 431 SPQAMEICTDIEAHFGKKI 449
+P + IE G+ I
Sbjct: 350 TPLDQKSMVAIEKLIGQSI 368
>UniRef50_Q5FS73 Cluster: ATP-dependent RNA helicase; n=2;
Gluconobacter oxydans|Rep: ATP-dependent RNA helicase -
Gluconobacter oxydans (Gluconobacter suboxydans)
Length = 432
Score = 174 bits (424), Expect = 4e-42
Identities = 123/392 (31%), Positives = 203/392 (51%), Gaps = 24/392 (6%)
Query: 76 SVKTFEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMIAQSQSGTGKTAAFV 135
S + F L L P LL+ + G+ P+ IQ ++P LL ++++ +Q+GTGKTA+F
Sbjct: 5 SAQAFADLALAPTLLRALDEAGYVKPTPIQAQSIPLLLEG--RDLLGLAQTGTGKTASFA 62
Query: 136 LAMLSRVDSN-----KNYPQVLCLSPTYELAIQTGEVAAKMAKFCPEIKLKYAVRGEELP 190
L +L R+ + KN +VL L+PT EL Q + ++ P +++ G
Sbjct: 63 LPLLHRLAATPRPAPKNGARVLVLAPTRELVSQIADGFESFSRHQP-VRVTTIFGGVSQV 121
Query: 191 RGSKITDH---ILIGTPGKMFDWGVKFGMFDMGKIKVFVLDEADVMINRQGHQDQCIRIH 247
K + I++ PG++ D ++ G+ D+ +++ VLDEAD M++ G RI
Sbjct: 122 HQVKALEEGVDIIVAAPGRLLDL-IEQGLCDLSQLETLVLDEADQMLD-MGFAKPIERIV 179
Query: 248 KCLPSTCQMMFFSATYGTAVMQFAEIIVSNPIIIRLLREEESLDNIKQYYVKCKSAEDKY 307
LP + FSAT ++ E ++ NP + + ++D I Q V +A DK
Sbjct: 180 ATLPEDRHTVLFSATMPKSIAALVESLLRNPAKVEIAPPSSTVDRIAQS-VMFLNASDKK 238
Query: 308 RAICNIYGVITIGQAIIFCHTRKTASWLSEKMSKDGHSVAVLSGELTVEQRIAVLDRFRV 367
A+ IGQA++F + A+ + +++ G + L G + QR L+ FR
Sbjct: 239 AALLAQLRTPGIGQAVVFTLQKNIANDVCTFLTESGITAEALHGNRSQGQRERALNAFRE 298
Query: 368 GLEKVLITTNVLSRGIDVEQVTLVVNFDMPMDMNRKADCETYLHRIGRTGRFGKAGIAIN 427
G +VL+ T++ +RGIDV+ VT V+N D+P + E+Y+HRIGRTGR G++G AI
Sbjct: 299 GDVQVLVATDIAARGIDVDTVTHVINHDLP------SLPESYVHRIGRTGRAGRSGFAIT 352
Query: 428 LIDSPQAMEICTDIEAHFGKKIQLLDIEDAEE 459
L D+ Q + +E G+ LD+ D+ E
Sbjct: 353 LCDAEQRAWLHA-VEREIGR---TLDVHDSHE 380
>UniRef50_A6NQG8 Cluster: Putative uncharacterized protein; n=2;
Bacteroidales|Rep: Putative uncharacterized protein -
Bacteroides capillosus ATCC 29799
Length = 636
Score = 174 bits (424), Expect = 4e-42
Identities = 120/377 (31%), Positives = 200/377 (53%), Gaps = 19/377 (5%)
Query: 79 TFEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMIAQSQSGTGKTAAFVLAM 138
TF L L ++LK + +G+ PS IQE A+P LA ++++ +Q+GTGKT AF +
Sbjct: 2 TFRELGLTQSILKALAELGYEKPSPIQEKAIPPALAG--RDVLGCAQTGTGKTCAFAAPI 59
Query: 139 LSRV--DSNKNYP-QVLCLSPTYELAIQTGEVAAKMAKFCP-EIKLKYAVRGEELPRGSK 194
L R+ D P + L L+PT ELA+Q E K P + + G++ P+ K
Sbjct: 60 LQRLGGDIPAGRPIRSLILTPTRELALQIQESFEAYGKHLPLRSAVIFGGVGQQ-PQVDK 118
Query: 195 ITD--HILIGTPGKMFDWGVKFGMFDMGKIKVFVLDEADVMINRQGHQDQCIRIHKCLPS 252
+ IL+ TPG++ D + G D+ ++++FVLDEAD M++ G R+ K LP+
Sbjct: 119 LKKGVDILVATPGRLLDLQGQ-GFVDLSRLEIFVLDEADRMLD-MGFLHDVRRVLKLLPA 176
Query: 253 TCQMMFFSATYGTAVMQFAEIIVSNPIIIRLLREEESLDNIKQYYVKCKSAEDKYRAICN 312
Q +FFSAT VM ++ NP+ + + ++ I Q V +K + +
Sbjct: 177 VKQTLFFSATMPPEVMDLVNGLLKNPVKVAVDPVSSPVEIIDQS-VYLVDKGNKTKLLAW 235
Query: 313 IYGVITIGQAIIFCHTRKTASWLSEKMSKDGHSVAVLSGELTVEQRIAVLDRFRVGLEKV 372
+ + + AI+F T+ A+ ++ + K G + A + G + R L F+ G +
Sbjct: 236 LVEGLDVKNAIVFTRTKHGANKVAGDLVKAGITAAAIHGNKSQTARQQALADFKAGKVRC 295
Query: 373 LITTNVLSRGIDVEQVTLVVNFDMPMDMNRKADCETYLHRIGRTGRFGKAGIAINLIDSP 432
L+ T++ +RG+D+E+++ V N+++P ETY+HRIGRTGR G+ G A++ D
Sbjct: 296 LVATDIAARGLDIEELSHVFNYNLP------EVPETYVHRIGRTGRAGRGGTAVSFCDFG 349
Query: 433 QAMEICTDIEAHFGKKI 449
+ E DIE G+K+
Sbjct: 350 E-QEYLKDIEKLIGRKV 365
>UniRef50_A0Z0M4 Cluster: ATP-dependent RNA helicase; n=1; marine
gamma proteobacterium HTCC2080|Rep: ATP-dependent RNA
helicase - marine gamma proteobacterium HTCC2080
Length = 582
Score = 174 bits (423), Expect = 5e-42
Identities = 116/366 (31%), Positives = 188/366 (51%), Gaps = 15/366 (4%)
Query: 80 FEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMIAQSQSGTGKTAAFVLAML 139
F +L L L + + ++G+ + IQ +P LL ++++ +Q+GTGKTAAF L +L
Sbjct: 11 FNSLGLPDFLQENLQSLGYETATPIQAGTIPLLLEG--RDVVGLAQTGTGKTAAFALPIL 68
Query: 140 SRVDSNKNYPQVLCLSPTYELAIQTGEVAAKMAKFCPEIKLKYAVRGEELPRGSKIT--- 196
+ +D PQ L L PT ELA Q E + +++ G ++ + K
Sbjct: 69 ANIDVKVRSPQALVLCPTRELAQQVAEAFRSYGRGMGGLRILSIFGGADMRQQLKSLREG 128
Query: 197 DHILIGTPGKMFDWGVKFGMFDMGKIKVFVLDEADVMINRQGHQDQCIRIHKCLPSTCQM 256
HI++ TPG++ D ++ D+ I VLDEAD M+ R G D I P ++
Sbjct: 129 THIVVATPGRLLDH-IERRSIDLTGINAVVLDEADEML-RMGFIDDVDTILAKTPKERKV 186
Query: 257 MFFSATYGTAVMQFAEIIVSNPIIIRLLREEESLDNIKQYYVKCKSAEDKYRAICNIYGV 316
FSAT V A +SNP I + + +NI+Q Y K A K A+ +
Sbjct: 187 ALFSATMPKRVRDIANKHLSNPAEISVAAAATTNENIEQCYWLAKGAS-KLEALKRLLAF 245
Query: 317 ITIGQAIIFCHTRKTASWLSEKMSKDGHSVAVLSGELTVEQRIAVLDRFRVGLEKVLITT 376
I+F TR++ + ++E++ + G + L+G++ + R+ + + G VL+ T
Sbjct: 246 EDTEGVIVFTRTRESTTVIAEQLRQTGLKASPLNGDMDQKMRLRTVSDLKSGALDVLVAT 305
Query: 377 NVLSRGIDVEQVTLVVNFDMPMDMNRKADCETYLHRIGRTGRFGKAGIAINLIDSPQAME 436
+V +RG+DVE++T V+N+D+P D E Y+HRIGRTGR G+ G AI L P+
Sbjct: 306 DVAARGLDVERITHVINYDVPFDE------EAYVHRIGRTGRAGRKGKAI-LFVVPRERR 358
Query: 437 ICTDIE 442
+ +IE
Sbjct: 359 MLRNIE 364
>UniRef50_Q6D2K3 Cluster: ATP-independent RNA helicase; n=6;
Proteobacteria|Rep: ATP-independent RNA helicase -
Erwinia carotovora subsp. atroseptica (Pectobacterium
atrosepticum)
Length = 460
Score = 173 bits (422), Expect = 6e-42
Identities = 121/394 (30%), Positives = 202/394 (51%), Gaps = 23/394 (5%)
Query: 76 SVKTFEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMIAQSQSGTGKTAAFV 135
S +F +L L L + +G+ + +Q LP +L+ ++ A++++G+GKTAAF
Sbjct: 2 STTSFSSLALPAEQLSNLNELGYTEMTPVQAATLPAVLSGA--DVRAKAKTGSGKTAAFG 59
Query: 136 LAMLSRVDSNKNYPQVLCLSPTYELAIQTGEVAAKMAKFCPEIKLKYAVRGEELPRGSKI 195
+ +L R+ + Q L L PT ELA Q + ++A+F IK+ G+ P G ++
Sbjct: 60 IGLLDRIVVSDFTTQALVLCPTRELADQVSKELRRLARFAQNIKILTLCGGQ--PMGQQL 117
Query: 196 TD-----HILIGTPGKMFDWGVKFGMFDMGKIKVFVLDEADVMINRQGHQDQCIRIHKCL 250
HI++GTPG++ D K + + +KV VLDEAD M++ G D +
Sbjct: 118 DSLVHAPHIVVGTPGRIQDHLRKQSLA-LDSLKVLVLDEADRMLD-MGFTDAIDDVISYT 175
Query: 251 PSTCQMMFFSATYGTAVMQFAEIIVSNPIIIRLLREEESLDNIKQYYVKCKSAEDKYRAI 310
PS Q + FSATY + Q + + P + + E +++Y K + + +
Sbjct: 176 PSDRQTLLFSATYPQEIEQISARVQRQPQRFEIADDVEESAIEQRFYETTK--DQRLPLL 233
Query: 311 CNIYGVITIGQAIIFCHTRKTASWLSEKMSKDGHSVAVLSGELTVEQRIAVLDRFRVGLE 370
I ++FC+T++ + E + G SV+ L G+L R VL RF
Sbjct: 234 IAILSHYQPASCVVFCNTKRDCQSVFEALEMRGISVSALHGDLEQRDRDQVLVRFSNRSC 293
Query: 371 KVLITTNVLSRGIDVEQVTLVVNFDMPMDMNRKADCETYLHRIGRTGRFGKAGIAINLID 430
+VL+ T+V +RG+D++++ LVVNF++ D E ++HRIGRTGR G G+A++L
Sbjct: 294 RVLVATDVAARGLDIKELALVVNFELAFDP------EVHVHRIGRTGRAGTQGLAVSLC- 346
Query: 431 SPQAMEICTDIEAHFGKKIQLLDIEDAEEIEKIG 464
+PQ M IE + G +I+ A+EI + G
Sbjct: 347 TPQEMNRANLIEDYIGMRIKW---TSADEISRSG 377
>UniRef50_Q64VR8 Cluster: ATP-dependent RNA helicase DeaD; n=14;
Bacteria|Rep: ATP-dependent RNA helicase DeaD -
Bacteroides fragilis
Length = 427
Score = 173 bits (422), Expect = 6e-42
Identities = 127/385 (32%), Positives = 204/385 (52%), Gaps = 30/385 (7%)
Query: 79 TFEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMIAQSQSGTGKTAAF---V 135
TFE L+L +LK + G+ +P+ IQE ++P LL ++++ +Q+GTGKTAAF +
Sbjct: 2 TFENLNLIEPILKALRQEGYTSPTPIQEQSIPILLQG--KDLLGCAQTGTGKTAAFSIPI 59
Query: 136 LAMLSRVDSNKNYPQVLCLSPTYELAIQTGEVAAKMAKFCPEIKLKYAVR----GEELPR 191
L L + D K + L L+PT ELAIQ GE ++ LK+AV G++ P+
Sbjct: 60 LQKLYKTDHRKGI-KALVLTPTRELAIQIGESFEAYGRYTG---LKHAVIFGGVGQK-PQ 114
Query: 192 GSKITD--HILIGTPGKMFDWGVKFGMFDMGKIKVFVLDEADVMINRQGHQDQCIRIHKC 249
+ IL+ TPG++ D + G + + FVLDEAD M++ G RI K
Sbjct: 115 TDALRSGIQILVATPGRLLDL-ISQGFISLSSLDFFVLDEADRMLD-MGFIHDIKRILKL 172
Query: 250 LPSTCQMMFFSATYGTAVMQFAEIIVSNPIIIRLLREEESLDNIKQ--YYVKCKSAEDKY 307
LP+ Q +FFSAT + A +++ P + + ++D I Q Y+V+ K +D
Sbjct: 173 LPARRQTLFFSATMPPEIETLANSMLTKPEKVEVTPASSTVDIISQQVYFVEKKEKKD-- 230
Query: 308 RAICNIYGVITIGQAIIFCHTRKTASWLSEKMSKDGHSVAVLSGELTVEQRIAVLDRFRV 367
+ ++ +I +IF T+ A L+ ++K G + G T R L F+
Sbjct: 231 -LLIHLLKDTSIESVLIFTRTKYGADKLARVLTKAGIGAEAIHGNKTQNARQRALTNFKN 289
Query: 368 GLEKVLITTNVLSRGIDVEQVTLVVNFDMPMDMNRKADCETYLHRIGRTGRFGKAGIAIN 427
+ LI T++ +RGIDV+Q++ V+N+++P ETY+HRIGRTGR G G+AI+
Sbjct: 290 HTLRALIATDIAARGIDVDQLSHVINYELPNVP------ETYVHRIGRTGRAGHEGVAIS 343
Query: 428 LIDSPQAMEICTDIEAHFGKKIQLL 452
+S + + DI+ GK I ++
Sbjct: 344 FCES-EELPYLKDIQKLIGKNIPVV 367
>UniRef50_Q12B10 Cluster: DEAD/DEAH box helicase-like; n=13;
Proteobacteria|Rep: DEAD/DEAH box helicase-like -
Polaromonas sp. (strain JS666 / ATCC BAA-500)
Length = 422
Score = 173 bits (422), Expect = 6e-42
Identities = 120/387 (31%), Positives = 209/387 (54%), Gaps = 20/387 (5%)
Query: 85 LKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMIAQSQSGTGKTAAFVLAMLSRV-D 143
L P L+ + G+ AP+ IQ A+P +L ++++ +Q+G+GKTAAF L ML ++ +
Sbjct: 12 LLPAFLRAIGDKGYRAPTAIQSQAIPAILLG--RDVVGSAQTGSGKTAAFALPMLQQLAN 69
Query: 144 SNKNYPQV---LCLSPTYELAIQTGEVAAKMAKFCPE-IKLKYAVRGEEL-PRGSKITD- 197
+ P+ L L PT ELA Q GE A AK+ P+ +K+ G + P+ +
Sbjct: 70 APTGTPRPTRGLILVPTRELAAQVGEAIAGFAKYLPQRVKVAVVFGGVSINPQMMNLRGG 129
Query: 198 -HILIGTPGKMFDWGVKFGMFDMGKIKVFVLDEADVMINRQGHQDQCIRIHKCLPSTCQM 256
I++ TPG++ D ++ + ++ VLDEAD +++ G ++ RI + LP Q
Sbjct: 130 ADIVVATPGRLLDL-LEHNALKISEVSTLVLDEADRLLDL-GFGEELGRILELLPPRRQN 187
Query: 257 MFFSATYGTAVMQFAEIIVSNPIIIRLLREEESLDNIKQYYVKCKSAEDKYRAICNIYGV 316
+FFSAT+ A+ AE ++ +P+ I + E+ +I Q ++ A + + + ++
Sbjct: 188 LFFSATFPPAIEVLAESMLHDPLRIEVQAVPETKPDIAQRAIQV-DASRRTQLLRHLVQT 246
Query: 317 ITIGQAIIFCHTRKTASWLSEKMSKDGHSVAVLSGELTVEQRIAVLDRFRVGLEKVLITT 376
+A++F T+ A +++K+ K GEL+ +R VL FR+ +V++ T
Sbjct: 247 EKWERALVFVATKHAAEIVADKLRKVHIEAEPFHGELSQGKRTQVLQDFRIKAVQVVVAT 306
Query: 377 NVLSRGIDVEQVTLVVNFDMPMDMNRKADCETYLHRIGRTGRFGKAGIAINLIDSPQAME 436
+V +RGID+ Q+ +VVN+D+P R A Y HRIGRTGR G++G+A++ + +
Sbjct: 307 DVAARGIDIAQMPVVVNYDLP----RSA--VDYTHRIGRTGRAGESGLAVSFVSAGTEAH 360
Query: 437 ICTDIEAHFGKKIQLLDIEDAEEIEKI 463
IE G K+Q +E E +E +
Sbjct: 361 FKL-IEKRQGIKVQREQVEGFEPLETL 386
>UniRef50_Q2LZJ8 Cluster: GA19670-PA; n=1; Drosophila
pseudoobscura|Rep: GA19670-PA - Drosophila pseudoobscura
(Fruit fly)
Length = 1007
Score = 173 bits (422), Expect = 6e-42
Identities = 115/385 (29%), Positives = 192/385 (49%), Gaps = 18/385 (4%)
Query: 77 VKTFEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMIAQSQSGTGKTAAFVL 136
+K F ALHL+ +++G+ A F P+KIQ A+P L +++ QS+SGTGKT +V+
Sbjct: 24 MKHFSALHLRRQVMRGLAAENFRTPTKIQAAAIPIALTG--MDLLVQSKSGTGKTLIYVV 81
Query: 137 AMLSRVDSNKNYPQVLCLSPTYELAIQTGEVAAKMAKFCPEIKLKYAVRGEELPRG-SKI 195
L + +P+VL + PT ELA+Q ++ + + K+ + G ++ R K+
Sbjct: 82 TALQMCSLSTQHPEVLVILPTRELALQVHDIFRFLGEKLRSFKVSSFMGGTDVTRDREKL 141
Query: 196 TD-HILIGTPGKMFDWGVKFGMFDMGKIKVFVLDEADVMINRQGHQDQCIRIHKCLPSTC 254
+ H+ IGTPG++ K G+ +M +K+ VLDEAD + Q + LP
Sbjct: 142 RNCHVAIGTPGRLLQLHEK-GVLNMSMVKLLVLDEADQLYVTASLQKTVNALIAVLPLQR 200
Query: 255 QMMFFSATYGTAVMQFAEIIVSNPIIIRLLREEESLDNIKQYYVKCKSAED-------KY 307
Q++ SAT+ + + ++ P++I L I+Q+ + + K
Sbjct: 201 QVIACSATFDQNLDEKIAKMMEKPVLISNSERATVLLGIRQFVYELPEQVNNLLEMRLKL 260
Query: 308 RAICNIYGVITIGQAIIFCHTRKTASWLSEKMSKDGHSVAVLSGELTVEQRIAVLDRFRV 367
A+ I+ + QA++F +++ A ++ A+LSG+L E R V + +R
Sbjct: 261 EALKKIFAQLNYEQAVLFSNSKMRADSYCSYLNAGKIPCALLSGDLAQEDRSKVFEGYRN 320
Query: 368 GLEKVLITTNVLSRGIDVEQVTLVVNFDMPMDMNRKADCETYLHRIGRTGRFGKAGIAIN 427
+ ++ T++++RG+D LV+N D P D TYLHRIGR GRFG IAI
Sbjct: 321 FSVRTIVATDLIARGVDSHHANLVINLDPP------TDHITYLHRIGRAGRFGSKAIAIT 374
Query: 428 LIDSPQAMEICTDIEAHFGKKIQLL 452
I S + E I A G + +L
Sbjct: 375 FISSAKQSENFKKILAKAGTGMSVL 399
>UniRef50_Q5NN72 Cluster: DNA and RNA helicase; n=3;
Sphingomonadales|Rep: DNA and RNA helicase - Zymomonas
mobilis
Length = 492
Score = 173 bits (421), Expect = 8e-42
Identities = 119/380 (31%), Positives = 200/380 (52%), Gaps = 19/380 (5%)
Query: 79 TFEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMIAQSQSGTGKTAAFVLAM 138
+F L L LL+ V +G+ P+ +Q A+P++L +++IA +Q+GTGKTA+FVL M
Sbjct: 2 SFADLGLSKELLQAVAELGYEEPTPVQAAAIPSVLM--MRDLIAVAQTGTGKTASFVLPM 59
Query: 139 LSRVDSNK---NYPQVLCLSPTYELAIQTGEVAAKMAKFCPEIKLKYAVRGEELPRGSKI 195
+ + + P+ L L PT ELA Q E K K+ ++ + + G +
Sbjct: 60 IDILAHGRCRARMPRSLILEPTRELAAQVAENFEKYGKY-HKLSMSLLIGGVPMAEQQAA 118
Query: 196 TDH---ILIGTPGKMFDWGVKFGMFDMGKIKVFVLDEADVMINRQGHQDQCIRIHKCLPS 252
+ +LI TPG++ D + G + ++ V+DEAD M++ G I LP+
Sbjct: 119 LEKGVDVLIATPGRLLDLFER-GKILLSSCEMLVIDEADRMLD-MGFIPDIETICTKLPT 176
Query: 253 TCQMMFFSATYGTAVMQFAEIIVSNPIIIRLLREEESLDNIKQYYVKCKSAEDKYRAICN 312
+ Q + FSAT A+ + A+ +SNP I + R + I Q ++ S K + +C+
Sbjct: 177 SRQTLLFSATMPPAIKKLADRFLSNPKQIEISRPATANTLIDQRLIEV-SPRSKKKKLCD 235
Query: 313 IYGVITIGQAIIFCHTRKTASWLSEKMSKDGHSVAVLSGELTVEQRIAVLDRFRVGLEKV 372
+ AIIFC+ + T L+ + + G SV + G+++ +R + L+RF+ G V
Sbjct: 236 MLRAEKDHTAIIFCNRKTTVRQLATTLEQQGFSVGQIHGDMSQPERGSELERFKNGQISV 295
Query: 373 LITTNVLSRGIDVEQVTLVVNFDMPMDMNRKADCETYLHRIGRTGRFGKAGIAINLIDSP 432
L+ +++ +RG+DV+ ++ V NFD+P + Y+HRIGRTGR G +G A+ + +P
Sbjct: 296 LVASDIAARGLDVKGISHVFNFDVP------THPDDYIHRIGRTGRGGASGEALTFV-TP 348
Query: 433 QAMEICTDIEAHFGKKIQLL 452
E T IE G +I L
Sbjct: 349 ADEEAITAIEKLMGVEIPRL 368
>UniRef50_A5G1U8 Cluster: DEAD/DEAH box helicase domain protein;
n=1; Acidiphilium cryptum JF-5|Rep: DEAD/DEAH box
helicase domain protein - Acidiphilium cryptum (strain
JF-5)
Length = 525
Score = 173 bits (420), Expect = 1e-41
Identities = 121/378 (32%), Positives = 195/378 (51%), Gaps = 21/378 (5%)
Query: 80 FEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMIAQSQSGTGKTAAFVLAML 139
F L L LL+ + + P+ IQ ++P +L +++ +Q+GTGKTAAFVL +L
Sbjct: 59 FTTLGLAEPLLRAISEQSYETPTPIQARSIPVMLEG--HDLVGIAQTGTGKTAAFVLPIL 116
Query: 140 SRVDSNKNYP-----QVLCLSPTYELAIQTGEVAAKMAKFC-PEIKLKY--AVRGEELPR 191
R+ +N+ P + L L+PT ELA Q + A KF P + + A G + R
Sbjct: 117 HRIAANRARPAPRACRALVLAPTRELATQIADAARTYGKFTRPSVAVVIGGAKPGPQARR 176
Query: 192 GSKITDHILIGTPGKMFDWGVKFGMFDMGKIKVFVLDEADVMINRQGHQDQCIRIHKCLP 251
D +L+ TPG++ D V G+ + ++ VLDEAD M++ G +I LP
Sbjct: 177 MESGVD-LLVATPGRLLDH-VAAGVIRLDAVETVVLDEADQMLDL-GFIPAIRQIMAKLP 233
Query: 252 STCQMMFFSATYGTAVMQFAEIIVSNPIIIRLLREEESLDNIKQYYVKCKSAEDKYRAIC 311
Q + FSAT + A + +P + + E + +D I Q V + E+K +
Sbjct: 234 RQRQAVMFSATMPKPIRALAGEFLRDPREVAVSVESKPVDRIDQQ-VLLLAPEEKKDKLA 292
Query: 312 NIYGVITIGQAIIFCHTRKTASWLSEKMSKDGHSVAVLSGELTVEQRIAVLDRFRVGLEK 371
+ + + +AI+F T+ A ++ + G A + G + QR LD+FR G +
Sbjct: 293 WLLADVAVERAIVFTRTKHGADKVTRHLEDAGIGAAAIHGNKSQGQRERALDQFRSGRIR 352
Query: 372 VLITTNVLSRGIDVEQVTLVVNFDMPMDMNRKADCETYLHRIGRTGRFGKAGIAINLIDS 431
VL+ T++ +RGIDV+ V+ VVNF++P E+Y+HRIGRT R G G+AI+L++
Sbjct: 353 VLVATDIAARGIDVDNVSHVVNFELPNVP------ESYVHRIGRTARAGAEGVAISLVE- 405
Query: 432 PQAMEICTDIEAHFGKKI 449
P + DIE G+ +
Sbjct: 406 PSELPYLRDIETLIGRHL 423
>UniRef50_A4BHZ9 Cluster: ATP-dependent RNA helicase; n=1; Reinekea
sp. MED297|Rep: ATP-dependent RNA helicase - Reinekea
sp. MED297
Length = 534
Score = 173 bits (420), Expect = 1e-41
Identities = 119/389 (30%), Positives = 208/389 (53%), Gaps = 25/389 (6%)
Query: 80 FEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMIAQSQSGTGKTAAFVLAML 139
F L L L++ + +G+ S IQ LP LA + I ++Q+GTGKTAAF++ +
Sbjct: 29 FHDLFLPIALMRAIQEVGYEYCSPIQAMTLPYALAG--HDCIGKAQTGTGKTAAFLITAI 86
Query: 140 SRVDSNK------NYPQVLCLSPTYELAIQTGEVAAKMAKFCPEIKLKYAVRGEELPRGS 193
+ + ++ P+ L L+PT ELA+Q E A + K+ +K+ V G + +
Sbjct: 87 TDLLEHRLEEQYVGEPRALILAPTRELALQIAEDAKALTKYS-RLKVAAVVGGMDFDKQK 145
Query: 194 KITDH----ILIGTPGKMFDWGVKFGMFDMGKIKVFVLDEADVMINRQGHQDQCIRIHKC 249
+ IL+ TPG++ D+ + +F + +I++ ++DEAD M++ G I +
Sbjct: 146 QQLHEQRTDILVATPGRLIDFMNRKAVF-LDQIEMLIIDEADRMLD-MGFIPDIKTIVRA 203
Query: 250 LPST--CQMMFFSATYGTAVMQFAEIIVSNPIIIRLLREEESLDNIKQYYVKCKSAEDKY 307
P T Q + FSAT+ ++ A+ ++P+ + + + ++ ++++Q+ V S+E+KY
Sbjct: 204 TPRTENRQTLLFSATFSQDILNLAQRWTNDPVRVEVEPKVKTAEDVEQH-VYLVSSEEKY 262
Query: 308 RAICNIYGVITIGQAIIFCHTRKTASWLSEKMSKDGHSVAVLSGELTVEQRIAVLDRFRV 367
+ I + ++F + R L+E + KDG VLSG++ +RI LD F+
Sbjct: 263 PVLRRIVRQDEADRVMVFANRRDIVRDLAENLKKDGIPCQVLSGDVPQNKRIRTLDGFKE 322
Query: 368 GLEKVLITTNVLSRGIDVEQVTLVVNFDMPMDMNRKADCETYLHRIGRTGRFGKAGIAIN 427
G +VL+ T+V RGI V+ V+ V+NF +P D E Y+HRIGRTGR GK G++I+
Sbjct: 323 GKFEVLVATDVAGRGIHVDGVSHVINFTLP------EDPEDYVHRIGRTGRAGKKGVSIS 376
Query: 428 LIDSPQAMEICTDIEAHFGKKIQLLDIED 456
+ +I IE + +KI L + +
Sbjct: 377 FACEDDSFQI-PAIEEYIKRKIDLEQVPE 404
>UniRef50_A0LLL9 Cluster: DEAD/DEAH box helicase domain protein;
n=2; Deltaproteobacteria|Rep: DEAD/DEAH box helicase
domain protein - Syntrophobacter fumaroxidans (strain
DSM 10017 / MPOB)
Length = 533
Score = 173 bits (420), Expect = 1e-41
Identities = 128/437 (29%), Positives = 221/437 (50%), Gaps = 27/437 (6%)
Query: 25 KKHNQETDSDDVPDTPNAADTSLLMKIIRQGLVESKLDIEIQRKDPNSPLYSVKTFEALH 84
++ + + +P+TP A + R+ DI+ + DP F L
Sbjct: 66 RRQGRRSGRKPLPETPLEAGPVETPEESREPEAAEPWDIDQFQVDPEE---GKTRFHDLD 122
Query: 85 LKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMIAQSQSGTGKTAAFVLAMLSRVDS 144
L +L+G+ F + IQ LP L + ++Q+GTGKTA F++ ML++
Sbjct: 123 LPAPILRGIADAEFRYCTPIQAALLPHTLNG--LDAAGRAQTGTGKTAVFIITMLTQFLR 180
Query: 145 N-------KNYPQVLCLSPTYELAIQTGEVAAKMAKFCP--EIKLKYAVRGEELPRG--S 193
N K P+ L L+PT ELA+Q + +++ P + + + E+ R
Sbjct: 181 NPAPEGRRKGTPRALVLAPTRELALQIEKETHLLSRHTPFKSVAIFGGMDYEKQKRRLTG 240
Query: 194 KITDHILIGTPGKMFDWGVKFGMFDMGKIKVFVLDEADVMINRQGHQDQCIRIHKCLPST 253
++ D I++ TPG++ D+ + G + K+++ V+DEAD M++ D IH P
Sbjct: 241 EVID-IVVATPGRLLDFK-RQGDLHLSKVEILVIDEADRMLDMGFIPDVQRIIHYTPPKA 298
Query: 254 C-QMMFFSATYGTAVMQFAEIIVSNPIIIRLLREEESLDNIKQYYVKCKSAEDKYRAICN 312
Q M FSAT V +FA NP+ + + E+ ++D + Q V + ++K+ + N
Sbjct: 299 QRQTMLFSATLTAEVTRFASQWTRNPVTVEIEPEQVAVDTVNQR-VLITTIDEKFTLLFN 357
Query: 313 IYGVITIGQAIIFCHTRKTASWLSEKMSKDGHSVAVLSGELTVEQRIAVLDRFRVGLEKV 372
+ + + I+F + R A L+E++ G S A+LSGE+ ++R+ L+ FR G +V
Sbjct: 358 MITRQNLDRVIVFTNRRDQARRLTERLGSYGISCALLSGEVDQKKRVKTLEEFRNGKIRV 417
Query: 373 LITTNVLSRGIDVEQVTLVVNFDMPMDMNRKADCETYLHRIGRTGRFGKAGIAINLIDSP 432
L+ T+V +RG+ VE V+ V N++MPMD E Y+HRIGRTGR G +GI+++
Sbjct: 418 LVATDVAARGLHVEAVSHVFNYNMPMDP------EDYVHRIGRTGRAGTSGISVSFASED 471
Query: 433 QAMEICTDIEAHFGKKI 449
+ + +E + G +I
Sbjct: 472 DSF-LIPALEKYLGHEI 487
>UniRef50_Q88NB7 Cluster: ATP-dependent RNA helicase rhlB; n=18;
Proteobacteria|Rep: ATP-dependent RNA helicase rhlB -
Pseudomonas putida (strain KT2440)
Length = 398
Score = 173 bits (420), Expect = 1e-41
Identities = 118/384 (30%), Positives = 206/384 (53%), Gaps = 26/384 (6%)
Query: 80 FEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMIAQSQSGTGKTAAFVLAML 139
F L L+ ++ +GF + IQ L L Q+ I ++Q+GTGKTAAF+++++
Sbjct: 11 FHDFKLSNELMHAIHDLGFPYCTPIQAQVLGYTLRG--QDAIGRAQTGTGKTAAFLISII 68
Query: 140 SRVDSN----KNY---PQVLCLSPTYELAIQTGEVAAKMAKFCPEIKLKYAVRGEELPRG 192
S++ + Y P+ L ++PT EL +Q + AA + K+ + + V G + +
Sbjct: 69 SQLQQTPPPKERYMGEPRALIIAPTRELVVQIAKDAAALTKYTG-LNVMSFVGGMDFDKQ 127
Query: 193 SKITD----HILIGTPGKMFDWGVKFGMFDMGKIKVFVLDEADVMINRQGHQDQCIRIHK 248
K + IL+ TPG++ D+ + G + ++V VLDEAD M++ G Q +I +
Sbjct: 128 LKALEARHCDILVATPGRLLDFNQR-GEVHLDMVEVMVLDEADRMLD-MGFIPQVRQIIR 185
Query: 249 CLP--STCQMMFFSATYGTAVMQFAEIIVSNPIIIRLLREEESLDNIKQYYVKCKSAEDK 306
P S Q + FSAT+ VM A+ +NP I+ + E + + ++Q+ V + DK
Sbjct: 186 QTPPKSERQTLLFSATFTDDVMNLAKQWTTNPAIVEIEPENVASETVEQH-VYAVAGSDK 244
Query: 307 YRAICNIYGVITIGQAIIFCHTRKTASWLSEKMSKDGHSVAVLSGELTVEQRIAVLDRFR 366
Y+ + N+ + ++F + + + EK+ +DG + A LSG++ +RI L+ FR
Sbjct: 245 YKLLYNLVTQNKWERVMVFANRKDEVRRIEEKLVRDGINAAQLSGDVPQHKRIRTLESFR 304
Query: 367 VGLEKVLITTNVLSRGIDVEQVTLVVNFDMPMDMNRKADCETYLHRIGRTGRFGKAGIAI 426
G VL+ T+V RGI ++ ++ V+NF +P D + Y+HRIGRTGR G +G++I
Sbjct: 305 EGRITVLVATDVAGRGIHIDGISHVINFTLP------EDPDDYVHRIGRTGRAGTSGVSI 358
Query: 427 NLIDSPQAMEICTDIEAHFGKKIQ 450
+ + ++ IEA G+KI+
Sbjct: 359 SFAGEDDSYQL-PAIEALLGRKIK 381
>UniRef50_A4M6V6 Cluster: DEAD/DEAH box helicase domain protein;
n=2; cellular organisms|Rep: DEAD/DEAH box helicase
domain protein - Petrotoga mobilis SJ95
Length = 530
Score = 172 bits (419), Expect = 1e-41
Identities = 111/355 (31%), Positives = 189/355 (53%), Gaps = 15/355 (4%)
Query: 80 FEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMIAQSQSGTGKTAAFVLAML 139
F+ + L N+L + G+ AP+ IQE +P LL+ N+I Q+Q+GTGKTAAF + ++
Sbjct: 4 FQQMGLSDNILSAIDRKGYEAPTPIQEKVIPLLLSGK-NNVIGQAQTGTGKTAAFGIPLI 62
Query: 140 SRVDSNKNYPQVLCLSPTYELAIQT-GEV-AAKMAKFCPEIKLKYAVRGEELPRGSKITD 197
R+D N Q L L+PT ELA+Q E+ + K K + + V R K
Sbjct: 63 ERLDEKANDVQALVLTPTRELALQVCNEIDSLKGNKRLNLLPVYGGVSIGNQIRALKRRV 122
Query: 198 HILIGTPGKMFDWGVKFGMFDMGKIKVFVLDEADVMINRQGHQDQCIRIHKCLPSTCQMM 257
+++GTPG++ D + G D+ KIK V+DEAD M++ +D + + K Q++
Sbjct: 123 DLVVGTPGRIIDH-LNRGTLDITKIKYLVIDEADEMLDMGFIEDVEMILSKTNKEK-QIL 180
Query: 258 FFSATYGTAVMQFAEIIVSNPIIIRLLREEE---SLDNIKQYYVKCKSAEDKYRAICNIY 314
FSAT ++ A + N + ++E + ++ KQ Y S +K + +
Sbjct: 181 MFSATMPQRIVTLARKHMGNFETVTTVQENKEDITVKKAKQIYYMI-SESNKIELLSRLI 239
Query: 315 GVITIGQAIIFCHTRKTASWLSEKMSKDGHSVAVLSGELTVEQRIAVLDRFRVGLEKVLI 374
+ T ++F T+ + ++ ++ K G+ L+G+++ QR ++DRF+ K+LI
Sbjct: 240 DIDTNFYGLVFTKTKVQSEEIANELIKKGYEAEALNGDVSQNQRERIMDRFKSKRIKILI 299
Query: 375 TTNVLSRGIDVEQVTLVVNFDMPMDMNRKADCETYLHRIGRTGRFGKAGIAINLI 429
+T+V +RGID++ + V+N+ +P + E Y+HRIGRT R G G AI +
Sbjct: 300 STDVAARGIDIDNLKYVINYSLPQNP------ENYIHRIGRTARAGNEGTAITFV 348
>UniRef50_P25888 Cluster: Putative ATP-dependent RNA helicase rhlE;
n=122; cellular organisms|Rep: Putative ATP-dependent
RNA helicase rhlE - Escherichia coli (strain K12)
Length = 454
Score = 172 bits (419), Expect = 1e-41
Identities = 120/396 (30%), Positives = 210/396 (53%), Gaps = 22/396 (5%)
Query: 79 TFEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMIAQSQSGTGKTAAFVLAM 138
+F++L L P++L+ V G+ P+ IQ+ A+P +L ++++A +Q+GTGKTA F L +
Sbjct: 2 SFDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVLEG--RDLMASAQTGTGKTAGFTLPL 59
Query: 139 LSRVDSNKNYPQ------VLCLSPTYELAIQTGEVAAKMAKFCPEIKLKYAVRGEEL-PR 191
L + + + + + L L+PT ELA Q GE +K+ I+ G + P+
Sbjct: 60 LQHLITRQPHAKGRRPVRALILTPTRELAAQIGENVRDYSKYL-NIRSLVVFGGVSINPQ 118
Query: 192 GSKITD--HILIGTPGKMFDWGVKFGMFDMGKIKVFVLDEADVMINRQGHQDQCIRIHKC 249
K+ +L+ TPG++ D + + + ++++ VLDEAD M++ G R+
Sbjct: 119 MMKLRGGVDVLVATPGRLLDLEHQNAV-KLDQVEILVLDEADRMLD-MGFIHDIRRVLTK 176
Query: 250 LPSTCQMMFFSATYGTAVMQFAEIIVSNPIIIRLLREEESLDNIKQYYVKCKSAEDKYRA 309
LP+ Q + FSAT+ + AE ++ NP+ I + R + D + Q+ V + K
Sbjct: 177 LPAKRQNLLFSATFSDDIKALAEKLLHNPLEIEVARRNTASDQVTQH-VHFVDKKRKREL 235
Query: 310 ICNIYGVITIGQAIIFCHTRKTASWLSEKMSKDGHSVAVLSGELTVEQRIAVLDRFRVGL 369
+ ++ G Q ++F T+ A+ L+E+++KDG A + G + R L F+ G
Sbjct: 236 LSHMIGKGNWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGD 295
Query: 370 EKVLITTNVLSRGIDVEQVTLVVNFDMPMDMNRKADCETYLHRIGRTGRFGKAGIAINLI 429
+VL+ T++ +RG+D+E++ VVN+++P N D Y+HRIGRTGR G A++L+
Sbjct: 296 IRVLVATDIAARGLDIEELPHVVNYELP---NVPED---YVHRIGRTGRAAATGEALSLV 349
Query: 430 DSPQAMEICTDIEAHFGKKIQLLDIEDAEEIEKIGA 465
++ DIE K+I + I E I A
Sbjct: 350 -CVDEHKLLRDIEKLLKKEIPRIAIPGYEPDPSIKA 384
>UniRef50_Q7VQL9 Cluster: Cold-shock DEAD-box protein A, inducible
ATP-independent RNA helicase; n=2;
Enterobacteriaceae|Rep: Cold-shock DEAD-box protein A,
inducible ATP-independent RNA helicase - Blochmannia
floridanus
Length = 487
Score = 172 bits (418), Expect = 2e-41
Identities = 113/361 (31%), Positives = 187/361 (51%), Gaps = 16/361 (4%)
Query: 74 LYSVKTFEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMIAQSQSGTGKTAA 133
L S +F L L ++ + +G+ AP IQ +P LL +++ + +G+GKTAA
Sbjct: 2 LDSENSFVDLGLNTYIVDMLSNIGYQAPLPIQTQCIPLLLKGC--DLLGMAHTGSGKTAA 59
Query: 134 FVLAMLSRVDSNKNYPQVLCLSPTYELAIQTGEVAAKMAKFCPEIKLKYAVRGEELPR-- 191
F+L +L +D + + Q L + PT ELAIQ G V K I + G + R
Sbjct: 60 FLLPLLQNIDIKQRFVQGLIIVPTRELAIQIGHVCMYFIKSLSHIINIAVLYGGQNYRIQ 119
Query: 192 --GSKITDHILIGTPGKMFDWGVKFGMFDMGKIKVFVLDEADVMINRQGHQDQCIRIHKC 249
K HI+IGTPG++ D + G+ D+ K+K ++DEAD M+ R G + I +
Sbjct: 120 FNDLKKNPHIIIGTPGRLLDH-LSRGL-DISKLKTLIIDEADEML-RMGFIEDIEHIIRY 176
Query: 250 LPSTCQMMFFSATYGTAVMQFAEIIVSNPIIIRLLREEESLDNIKQYYVKCKSAEDKYRA 309
+P+ Q FSAT ++ + + + NP I + + +IKQ Y K+ A
Sbjct: 177 VPTHRQTALFSATLPVSIRKLSYKFMCNPKEIYINPSISACADIKQSYWLVHGIS-KHEA 235
Query: 310 ICNIYGVITIGQAIIFCHTRKTASWLSEKMSKDGHSVAVLSGELTVEQRIAVLDRFRVGL 369
+ V IIF T+ +SE + + G++ A L+G++ R + R R G
Sbjct: 236 LMRFLEVEKFEAVIIFVRTKSATLQISEILQRFGYNSAALNGDMNQSVRCKTISRLRCGT 295
Query: 370 EKVLITTNVLSRGIDVEQVTLVVNFDMPMDMNRKADCETYLHRIGRTGRFGKAGIAINLI 429
+LITT+V +RG+D+ +++ V+N+D+P + N Y+HRIGRTGR G++G ++ +
Sbjct: 296 LDILITTDVAARGLDINRISFVINYDIPCNYN------AYVHRIGRTGRAGRSGKSLLFV 349
Query: 430 D 430
+
Sbjct: 350 E 350
>UniRef50_O07897 Cluster: Heat resistant RNA dependent ATPase; n=3;
Thermus thermophilus|Rep: Heat resistant RNA dependent
ATPase - Thermus thermophilus
Length = 510
Score = 172 bits (418), Expect = 2e-41
Identities = 117/391 (29%), Positives = 211/391 (53%), Gaps = 31/391 (7%)
Query: 80 FEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMIAQSQSGTGKTAAFVLAML 139
F+ LKP +L+ ++ G P+ IQ ALP LA +++I Q+++GTGKT AF L +
Sbjct: 3 FKDFPLKPEILEALHGRGLTTPTPIQAAALP--LALEGKDLIGQARTGTGKTLAFALPIA 60
Query: 140 SRVDSNKNY---PQVLCLSPTYELAIQTGEVAAKMAKFCPEIKLK-------YAVRGEEL 189
R+ ++ P+ L L+PT ELA+Q VA+++ P +K+ Y + E L
Sbjct: 61 ERLAPSQERGRKPRALVLTPTRELALQ---VASELTAVAPHLKVVAVYGGTGYGKQKEAL 117
Query: 190 PRGSKITDHILIGTPGKMFDWGVKFGMFDMGKIKVFVLDEADVMINRQGHQDQCIRIHKC 249
RG+ ++ TPG+ D+ ++ G+ D+ +++V VLDEAD M++ G +++ +
Sbjct: 118 LRGADA----VVATPGRALDY-LRQGVLDLSRVEVAVLDEADEMLS-MGFEEEVEALLSA 171
Query: 250 LPSTCQMMFFSATYGTAVMQFAEIIVSNPIIIRLLREEESLDNIKQYYVKCKSAEDKYRA 309
P + Q + FSAT + + AE + NP++I ++++E ++ V +
Sbjct: 172 TPPSRQTLLFSATLPSWAKRLAERYMKNPVLINVIKDEPV--TYEEEAVPAP-VRGRLEV 228
Query: 310 ICNIYGVITIGQAIIFCHTRKTASWLSEKMSKDGHSVAVLSGELTVEQRIAVLDRFRVGL 369
+ ++ V + +A++F T+ +++ + + GH L G+L+ +R VL FR G
Sbjct: 229 LSDLLYVASPDRAMVFTRTKAETEEIAQGLLRLGHLAQALHGDLSQGERERVLGAFRQGE 288
Query: 370 EKVLITTNVLSRGIDVEQVTLVVNFDMPMDMNRKADCETYLHRIGRTGRFGKAGIAINLI 429
+VL+ T+V +RG+D+ QV LVV++ +P +R E Y HR GRTGR G+ G + L+
Sbjct: 289 VRVLVATDVAARGLDIPQVDLVVHYRLP---DR---AEAYQHRSGRTGRAGRGGRVV-LL 341
Query: 430 DSPQAMEICTDIEAHFGKKIQLLDIEDAEEI 460
P+ +E G++ + ++ EE+
Sbjct: 342 YGPRERRDVEALERAVGRRFKRVNPPTPEEV 372
>UniRef50_A7U5W6 Cluster: DEAD-box helicase 1; n=8;
Aconoidasida|Rep: DEAD-box helicase 1 - Plasmodium
falciparum
Length = 457
Score = 172 bits (418), Expect = 2e-41
Identities = 123/447 (27%), Positives = 218/447 (48%), Gaps = 42/447 (9%)
Query: 27 HNQETDSDDVPDTPNAADTSLLMKIIRQGLVESKLDIEIQRKDPNSPLYSVKT--FEALH 84
HN + + D D N D+ K ++ L + L+ + +V T F+
Sbjct: 6 HNAQDELVDYEDDENILDS----KDVKGNLGNNILNNNNKGGAMRGSYATVHTGGFKDFF 61
Query: 85 LKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMIAQSQSGTGKTAAFVLAMLSRVDS 144
LKP LL+ + GF PS++Q+ +P + +++ Q++SG GKTA FVL++L ++D+
Sbjct: 62 LKPELLRAISESGFEHPSEVQQETIPAAITGT--DILCQAKSGMGKTAVFVLSILQQLDT 119
Query: 145 NKN--------------------YPQVLCLSPTYELAIQTGEVAAKMAKFCPEIKLKYAV 184
N+N + + L L+ T ELA Q + +K+ ++ +
Sbjct: 120 NENQDMQDTKEMNNDNNNNGDNKFVRCLGLAHTRELAYQIKNEFDRFSKYLKNVRCEVVY 179
Query: 185 RGEELPRGSKI-----TDHILIGTPGKMFDWGVKFGMFDMGKIKVFVLDEADVMINRQGH 239
G + + K+ HI+IGTPG++ ++ KI+ FVLDE D + +
Sbjct: 180 GGISMNKHIKLFKEDNIPHIIIGTPGRILAL-IREKYLITDKIQHFVLDECDKCLEKLDM 238
Query: 240 QDQCIRIHKCLPSTCQMMFFSATYGTAVMQFAEIIVSNPIIIRLLREEE-SLDNIKQYYV 298
+ +I P Q+MFFSAT + + + NP+ I + E + L + Q+YV
Sbjct: 239 RSDVQKIFISTPLKKQVMFFSATMAKEMRDVCKKFLQNPVEIFIDDEAKLKLHGLLQHYV 298
Query: 299 KCKSAEDKYRAICNIYGVITIGQAIIFCHTRKTASWLSEKMSKDGHSVAVLSGELTVEQR 358
K + +DK R + I + Q IIF + A L + +++ + G L ++R
Sbjct: 299 KLQE-KDKTRKLIEILDALEFNQVIIFVKSVTRAITLDKLLTECNFPSIAIHGGLEQQER 357
Query: 359 IAVLDRFRVGLEKVLITTNVLSRGIDVEQVTLVVNFDMPMDMNRKADCETYLHRIGRTGR 418
I D+F+ ++L++T++ RGID+E+V +V+N+DMP + ++YLHR+GR GR
Sbjct: 358 IERYDKFKKFENRILVSTDLFGRGIDIERVNIVINYDMP------ENSDSYLHRVGRAGR 411
Query: 419 FGKAGIAINLIDSPQAMEICTDIEAHF 445
FG G+A+ + S + +++ F
Sbjct: 412 FGTKGLAVTFVSSQEDTLALNEVQTRF 438
>UniRef50_Q9HXE5 Cluster: ATP-dependent RNA helicase rhlB; n=22;
Gammaproteobacteria|Rep: ATP-dependent RNA helicase rhlB
- Pseudomonas aeruginosa
Length = 397
Score = 171 bits (417), Expect = 3e-41
Identities = 117/383 (30%), Positives = 205/383 (53%), Gaps = 26/383 (6%)
Query: 80 FEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMIAQSQSGTGKTAAFVLAML 139
F +L P+L+ ++ +GF + IQ L L Q+ I ++Q+GTGKTAAF+++++
Sbjct: 11 FHDFNLAPSLMHAIHDLGFPYCTPIQAQVLGFTLRG--QDAIGRAQTGTGKTAAFLISII 68
Query: 140 SRV----DSNKNY---PQVLCLSPTYELAIQTGEVAAKMAKFCPEIKLKYAVRGEELPRG 192
+++ + Y P+ L ++PT EL +Q + AA + K+ + + V G + +
Sbjct: 69 TQLLQTPPPKERYMGEPRALIIAPTRELVVQIAKDAAALTKYTG-LNVMTFVGGMDFDKQ 127
Query: 193 SKITD----HILIGTPGKMFDWGVKFGMFDMGKIKVFVLDEADVMINRQGHQDQCIRIHK 248
K + IL+ TPG++ D+ + G + ++V VLDEAD M++ G Q +I +
Sbjct: 128 LKQLEARFCDILVATPGRLLDFNQR-GEVHLDMVEVMVLDEADRMLD-MGFIPQVRQIIR 185
Query: 249 CLP--STCQMMFFSATYGTAVMQFAEIIVSNPIIIRLLREEESLDNIKQYYVKCKSAEDK 306
P Q + FSAT+ VM A+ +P I+ + E + D ++Q+ V + DK
Sbjct: 186 QTPHKGERQTLLFSATFTDDVMNLAKQWTVDPAIVEIEPENVASDTVEQH-VYAVAGSDK 244
Query: 307 YRAICNIYGVITIGQAIIFCHTRKTASWLSEKMSKDGHSVAVLSGELTVEQRIAVLDRFR 366
Y+ + N+ + ++F + + + E+++KDG S A +SG++ +RI L+ FR
Sbjct: 245 YKLLYNLVAQNNWERVMVFANRKDEVRRIEERLTKDGISAAQMSGDVPQHKRIRTLEGFR 304
Query: 367 VGLEKVLITTNVLSRGIDVEQVTLVVNFDMPMDMNRKADCETYLHRIGRTGRFGKAGIAI 426
G +VL+ T+V RGI ++ ++ V+NF +P D + Y+HRIGRTGR G +G +I
Sbjct: 305 EGKIRVLVATDVAGRGIHIDGISHVINFTLP------EDPDDYVHRIGRTGRAGASGTSI 358
Query: 427 NLIDSPQAMEICTDIEAHFGKKI 449
+ A + IE G+KI
Sbjct: 359 SFAGEDDAFAL-PPIEELLGRKI 380
>UniRef50_Q81QF0 Cluster: ATP-dependent RNA helicase, DEAD/DEAH box
family; n=25; Firmicutes|Rep: ATP-dependent RNA
helicase, DEAD/DEAH box family - Bacillus anthracis
Length = 450
Score = 171 bits (415), Expect = 4e-41
Identities = 122/382 (31%), Positives = 197/382 (51%), Gaps = 15/382 (3%)
Query: 77 VKTFEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMIAQSQSGTGKTAAFVL 136
+K F L + + G + IQE A+P +L+ +++I Q+++GTGKT AFVL
Sbjct: 4 LKNFLELGISETFNHTLRENGITEATPIQEKAIPVILSG--KDIIGQAKTGTGKTLAFVL 61
Query: 137 AMLSRVDSNKNYPQVLCLSPTYELAIQTGEVAAKMAKFCPEIKLKYAVRGEELP---RGS 193
+L ++D + Q L ++PT ELA+Q KM +I + G+++ R
Sbjct: 62 PILEKIDPESSDVQALIVAPTRELALQITTEIKKMLVQREDINVLAIYGGQDVAQQLRKL 121
Query: 194 KITDHILIGTPGKMFDWGVKFGMFDMGKIKVFVLDEADVMINRQGHQDQCIRIHKCLPST 253
K HI++ TPG++ D ++ D+ + VLDEAD M+ G I P +
Sbjct: 122 KGNTHIVVATPGRLLDH-IRRETIDLSNLSTIVLDEADQMLYF-GFLYDIEDILDETPGS 179
Query: 254 CQMMFFSATYGTAVMQFAEIIVSNPIIIRLLREEESLDNIKQYYVKCKSAEDKYRAICNI 313
Q M FSAT + + A+ + P +I++ EE ++D I+Q ++ K A+ +
Sbjct: 180 KQTMLFSATIPKDIKKLAKRYMDEPQMIQVQSEEVTVDTIEQRVIETTDRA-KPDALRFV 238
Query: 314 YGVITIGQAIIFCHTRKTASWLSEKMSKDGHSVAVLSGELTVEQRIAVLDRFRVGLEKVL 373
A+IFC T+ AS L + + G++ A L G++ +R V+ FR + L
Sbjct: 239 MDRDQPFLAVIFCRTKVRASKLYDNLKGLGYNCAELHGDIPQAKRERVMKSFREAKIQYL 298
Query: 374 ITTNVLSRGIDVEQVTLVVNFDMPMDMNRKADCETYLHRIGRTGRFGKAGIAINLIDSPQ 433
I T+V +RG+DV+ VT V N+D+P D+ E+Y+HRIGRTGR G +G+AI + +
Sbjct: 299 IATDVAARGLDVDGVTHVFNYDIPEDV------ESYIHRIGRTGRAGGSGLAITFVAAKD 352
Query: 434 AMEICTDIEAHFGKKIQLLDIE 455
+ +IE G IQ IE
Sbjct: 353 EKHL-EEIEKTLGAPIQREIIE 373
>UniRef50_Q26CN9 Cluster: ATP-dependent RNA helicase; n=1;
Flavobacteria bacterium BBFL7|Rep: ATP-dependent RNA
helicase - Flavobacteria bacterium BBFL7
Length = 644
Score = 171 bits (415), Expect = 4e-41
Identities = 115/356 (32%), Positives = 185/356 (51%), Gaps = 13/356 (3%)
Query: 77 VKTFEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMIAQSQSGTGKTAAFVL 136
+K FE L L LL G+ MGF P++IQ+ ++P LL + I +Q+GTGKTAAF L
Sbjct: 12 LKNFEVLGLSQPLLNGLADMGFENPTEIQQQSIPILLKHDG-DFIGLAQTGTGKTAAFGL 70
Query: 137 AMLSRVDSNKNYPQVLCLSPTYELAIQTGEVAAKMAKFCPEIKLKYAVRGEELP---RGS 193
+L +D N Q L L+PT ELA Q +M+K ++ + G + R
Sbjct: 71 PLLDLIDVNSREVQALILAPTRELAQQICGQMEQMSKHLGKLNVVPVFGGANIMNQIRDI 130
Query: 194 KITDHILIGTPGKMFDWGVKFGMFDMGKIKVFVLDEADVMINRQGHQDQCIRIHKCLPST 253
+ I++ TPG++ D +K + +K VLDEAD M+N +D + K +
Sbjct: 131 RRGAQIIVATPGRLMDL-MKRREVKLDALKYMVLDEADEMLNMGFKEDIDFILSKS-DTG 188
Query: 254 CQMMFFSATYGTAVMQFAEIIVSNPIIIRLLREEESLDNIKQYYVKCKSAEDKYRAICNI 313
+ FSAT + + + + P +R+ + NI+ ++ K A DK A+
Sbjct: 189 RNIWLFSATMAREIKRIVDTYMVQPEEVRINPKNIVNKNIEHQSIQLK-ASDKIEALRRF 247
Query: 314 YGVITIGQAIIFCHTRKTASWLSEKMSKDGHSVAVLSGELTVEQRIAVLDRFRVGLEKVL 373
++FC T++ ++++++ +G++ L G+++ QR A + RFR K+L
Sbjct: 248 LDYDEDMFGVVFCRTKRDTQNVADQLNNNGYATEALHGDMSQAQRDAAMKRFRNKNLKLL 307
Query: 374 ITTNVLSRGIDVEQVTLVVNFDMPMDMNRKADCETYLHRIGRTGRFGKAGIAINLI 429
I T+V +RGIDV+ +T V++F +P D E Y HR GRT R GK G++I LI
Sbjct: 308 IATDVAARGIDVDDITHVIHFALP------DDPEFYTHRSGRTARAGKKGVSIALI 357
>UniRef50_P32892 Cluster: ATP-dependent RNA helicase DRS1; n=13;
Saccharomycetales|Rep: ATP-dependent RNA helicase DRS1 -
Saccharomyces cerevisiae (Baker's yeast)
Length = 752
Score = 171 bits (415), Expect = 4e-41
Identities = 114/362 (31%), Positives = 193/362 (53%), Gaps = 19/362 (5%)
Query: 78 KTFEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMIAQSQSGTGKTAAFVLA 137
+ F +L L +LKG+ ++G+ PS IQ +P L +++IA + +G+GKTAAF++
Sbjct: 231 ENFNSLSLSRPVLKGLASLGYVKPSPIQSATIPIALLG--KDIIAGAVTGSGKTAAFMIP 288
Query: 138 MLSRV---DSNKNYPQVLCLSPTYELAIQTGEVAAKMAKFCPEIKLKYAVRGEELPRGS- 193
++ R+ + +V+ L PT ELAIQ +V ++A+F I AV G L +
Sbjct: 289 IIERLLYKPAKIASTRVIVLLPTRELAIQVADVGKQIARFVSGITFGLAVGGLNLRQQEQ 348
Query: 194 --KITDHILIGTPGKMFDWGVKFGMFDMGKIKVFVLDEADVMINRQGHQDQCIRIHKCLP 251
K I+I TPG+ D F++ +++ V+DEAD M+ +G QD+ I LP
Sbjct: 349 MLKSRPDIVIATPGRFIDHIRNSASFNVDSVEILVMDEADRMLE-EGFQDELNEIMGLLP 407
Query: 252 STCQMMFFSATYGTAVMQFAEIIVSNPIIIRLLREEESLDNIKQYYVKCKSAED-KYRAI 310
S Q + FSAT + + + + P+ I + +++ + Q +V+ + + K +
Sbjct: 408 SNRQNLLFSATMNSKIKSLVSLSLKKPVRIMIDPPKKAATKLTQEFVRIRKRDHLKPALL 467
Query: 311 CNIYGVIT-IGQA--IIFCHTRKTASWLSEKMSKDGHSVAVLSGELTVEQRIAVLDRFRV 367
N+ + GQ ++F ++TA L M G SV L G LT EQR+ +++F+
Sbjct: 468 FNLIRKLDPTGQKRIVVFVARKETAHRLRIIMGLLGMSVGELHGSLTQEQRLDSVNKFKN 527
Query: 368 GLEKVLITTNVLSRGIDVEQVTLVVNFDMPMDMNRKADCETYLHRIGRTGRFGKAGIAIN 427
VLI T++ SRG+D+ ++ +V+N+DMP E YLHR+GRT R G+ G ++
Sbjct: 528 LEVPVLICTDLASRGLDIPKIEVVINYDMPKSY------EIYLHRVGRTARAGREGRSVT 581
Query: 428 LI 429
+
Sbjct: 582 FV 583
>UniRef50_Q6MBR0 Cluster: Putative ATP-dependent RNA helicase; n=1;
Candidatus Protochlamydia amoebophila UWE25|Rep:
Putative ATP-dependent RNA helicase - Protochlamydia
amoebophila (strain UWE25)
Length = 407
Score = 170 bits (414), Expect = 6e-41
Identities = 112/378 (29%), Positives = 197/378 (52%), Gaps = 22/378 (5%)
Query: 57 VESKLDIEIQRKDPNSPLYSVKTFEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLADP 116
++ ++D+E+ ++PN F +L P +LK + M F PS+IQ A+P L
Sbjct: 1 MQEQIDVELLPQEPNG-------FITFNLDPLILKALDKMNFKEPSRIQTEAIP--LIQK 51
Query: 117 PQNMIAQSQSGTGKTAAFVLAMLSRVDSNKNYPQVLCLSPTYELAIQTGEVAAKMAKFCP 176
Q++IA SQ+G+GKTA + + +RV++ Q L + PT ELA+Q K+ K+
Sbjct: 52 KQDLIALSQTGSGKTATCAIPICNRVNTELTDIQALIIVPTRELALQYATETQKIGKY-K 110
Query: 177 EIKLKYAVRGEELP-RGSKITD--HILIGTPGKMFDWGVKFGMFDMGKIKVFVLDEADVM 233
+K GE+ + SK+ +L+ TPG++ D+ + D+ ++ +LDEAD M
Sbjct: 111 GVKAFAIFGGEDSALQQSKLKHGVQVLVATPGRLIDF-IYSRQIDLSHVETLILDEADEM 169
Query: 234 INRQGHQDQCIRIHKCLPSTCQMMFFSATYGTAVMQFAEIIVSNPIIIRLLREEESLDNI 293
++ G D + I +CL + Q + FSAT A+ + A+ + +P + L+ E+ S +
Sbjct: 170 LS-MGFYDDLVFIIQCLNHSHQTLLFSATMPAAIQRLAKHHMKDPQEVNLILEQASPHLL 228
Query: 294 KQYYVKCKSAEDKYRAICNIYGVITIGQAIIFCHTRKTASWLSEKMSKDGHSVAVLSGEL 353
+ +V C A + + + QAIIFC +R + + V L L
Sbjct: 229 EHCFVYC-LAHQRDHELIQLIKENNPTQAIIFCQSRFQVEKVCRTLQSHLDGVDFLHAGL 287
Query: 354 TVEQRIAVLDRFRVGLEKVLITTNVLSRGIDVEQVTLVVNFDMPMDMNRKADCETYLHRI 413
+ R V ++FR G ++L+ T++++RG+D +V+ V + + + + Y+HR
Sbjct: 288 NQDIRTIVTNKFRTGKIRLLVATDIVARGLDFSKVSHVFIYQL------SHESDVYVHRS 341
Query: 414 GRTGRFGKAGIAINLIDS 431
GRTGR+GK G+ I+L+ S
Sbjct: 342 GRTGRYGKTGVVISLVTS 359
>UniRef50_A6QHA1 Cluster: ATP-dependent RNA helicase DEAD/DEAH box
family protein; n=16; Staphylococcus|Rep: ATP-dependent
RNA helicase DEAD/DEAH box family protein -
Staphylococcus aureus (strain Newman)
Length = 448
Score = 170 bits (414), Expect = 6e-41
Identities = 117/382 (30%), Positives = 200/382 (52%), Gaps = 16/382 (4%)
Query: 80 FEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMIAQSQSGTGKTAAFVLAML 139
FE +L+ +L+ V + F P++IQ +P +L N+I QSQ+GTGK+ AF+L ++
Sbjct: 6 FEQFNLESSLIDAVKDLNFEKPTEIQNRIIPRILKRT--NLIGQSQTGTGKSHAFLLPLM 63
Query: 140 SRVDSNKNYPQVLCLSPTYELAIQTGEVAAKMAKFCPEIKLKYAVRGEELPRGSKITD-- 197
+DS PQ + ++PT ELA Q + A +++F + +K + G ++ + + +
Sbjct: 64 QLIDSEIKEPQAIVVAPTRELAQQLYDAANHLSQFKAGVSVKVFIGGTDIEKDRQRCNAQ 123
Query: 198 -HILIGTPGKMFDWGVKFGMFDMGKIKVFVLDEADVMINRQGHQDQCIRIHKCLPSTCQM 256
++IGTP ++ D K G + V+DEAD+MI+ G + I L +
Sbjct: 124 PQLIIGTPTRINDLA-KTGHLHVHLASYLVIDEADLMIDL-GLIEDVDYIAARLEDNANI 181
Query: 257 MFFSATYGTAVMQFAEIIVSNPIIIRLLREEESLDNIKQYYVKCKSAEDKYRAICNIYGV 316
FSAT + F +S+P + + ++++ NI+ Y + K A K N+ +
Sbjct: 182 AVFSATIPQQLQPFLNKYLSHPEYVAVDSKKQNKKNIEFYLIPTKGAA-KVEKTLNLIDI 240
Query: 317 ITIGQAIIFCHTRKTASWLSEKMSKDGHSVAVLSGELTVEQRIAVLDRFRVGLEKVLITT 376
+ IIFC++R A+ L+ +++ G V ++ G LT +R + R R + +I +
Sbjct: 241 LNPYLCIIFCNSRDNANDLARSLNEAGIKVGMIHGGLTPRERKQQMKRIRNLEFQYVIAS 300
Query: 377 NVLSRGIDVEQVTLVVNFDMPMDMNRKADCETYLHRIGRTGRFGKAGIAINLIDSPQAME 436
++ SRGID+E V+ V+NFD+P D+ + + HR+GRTGR G+AI L SP
Sbjct: 301 DLASRGIDIEGVSHVINFDVPNDI------DFFTHRVGRTGRGNYKGVAITLY-SPDEEH 353
Query: 437 ICTDIEAHFGKKIQLLDIEDAE 458
+ IE G +DI+D E
Sbjct: 354 NISLIEDR-GFVFNTVDIKDGE 374
>UniRef50_A4B5L7 Cluster: ATP-dependent RNA helicase DbpA; n=3;
Proteobacteria|Rep: ATP-dependent RNA helicase DbpA -
Alteromonas macleodii 'Deep ecotype'
Length = 459
Score = 170 bits (414), Expect = 6e-41
Identities = 118/386 (30%), Positives = 202/386 (52%), Gaps = 28/386 (7%)
Query: 76 SVKTFEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMIAQSQSGTGKTAAFV 135
+V+T + L + P + K + + G + S IQ +LP L +++I Q+Q+G+GKT FV
Sbjct: 2 TVETVKQLDINPAITKALDSQGIHQLSPIQAQSLPDALQG--KDVIGQAQTGSGKTLCFV 59
Query: 136 LAMLSRVDSNKNYPQVLCLSPTYELAIQTGEVAAKMAKFCPEIKLKYAVRGEELP---RG 192
+ L +++ N Q + L PT ELA Q + AK IK+ G+ + +
Sbjct: 60 IPALEKIEVNDFSTQAIMLCPTRELAEQVAQQCRSAAKDIGNIKVTTLCGGQPMGPQIQS 119
Query: 193 SKITDHILIGTPGKMFDWGVKFGMFDMGKIKVFVLDEADVMINRQGHQDQCIRIHKCLPS 252
K + HI++GTPG++ D V+ D+ +K+ VLDEAD M++ G +D I P
Sbjct: 120 LKHSPHIIVGTPGRVMDH-VEKRRIDLRNVKLRVLDEADRMLD-MGFEDDLRIIFGQTPK 177
Query: 253 TCQMMFFSATYGTAVMQFAEIIVSNPIIIRLLREEESLDNIKQ--YYVKCKSAEDKYRAI 310
Q + FSAT+ + + A+ + NP+ ++ +E+ I Q Y V + +A+
Sbjct: 178 QVQTLLFSATFTEQIERVAKQYLHNPVTCKV-ESQENKPAITQLGYNVLPHTRTQALKAV 236
Query: 311 CNIYGVITIGQAIIFCHTRKTASWLSEKMSKDGHSVAVLSGELTVEQRIAVLDRFRVGLE 370
Y AI+FC+ + + + +++ +DG S L G++ QR +VL +F
Sbjct: 237 LTEYQP---KNAIVFCNRKTQVNDVVDELIEDGFSAKGLQGDMEQHQRTSVLMQFASDSL 293
Query: 371 KVLITTNVLSRGIDVEQVTLVVNFDMPMDMNRKADCETYLHRIGRTGRFGKAGIAINLID 430
+VL+ T+V +RG+D++ V V+N+ + + ET++HRIGRT R G G+AI L+
Sbjct: 294 QVLVATDVAARGLDIDDVACVINYTV------SEEPETHIHRIGRTARAGAKGMAITLV- 346
Query: 431 SPQAMEICTDIEAHFGKKIQLLDIED 456
++ E HF +KI++L D
Sbjct: 347 --------SEEEEHFLRKIEVLQESD 364
>UniRef50_A2U1Q9 Cluster: ATP-dependent RNA helicase, DEAD/DEAH box
family protein; n=4; Flavobacteriaceae|Rep:
ATP-dependent RNA helicase, DEAD/DEAH box family protein
- Polaribacter dokdonensis MED152
Length = 373
Score = 170 bits (413), Expect = 8e-41
Identities = 114/358 (31%), Positives = 186/358 (51%), Gaps = 14/358 (3%)
Query: 77 VKTFEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMIAQSQSGTGKTAAFVL 136
+ TF L ++ + +K + +G P+ IQE A+P LL P + I +Q+GTGKTAAF L
Sbjct: 1 MSTFAGLGIRKDYIKSIKEIGITKPTDIQEKAIPVLLKSPT-DFIGLAQTGTGKTAAFGL 59
Query: 137 AMLSRVDSNKNYPQVLCLSPTYELAIQTGEVAAKMAKFCPE-IKLKYAVRGEELPR---G 192
+L +D+N ++ Q L LSPT EL Q + K K+ + I L+ GE++ R
Sbjct: 60 PVLHHIDANSDHIQALILSPTRELVQQIKKQLFKFTKYVDDRIFLEAVFGGEKIDRQMNN 119
Query: 193 SKITDHILIGTPGKMFDWGVKFGMFDMGKIKVFVLDEADVMINRQGHQDQCIRIHKCLPS 252
K T HI+I TPG++ D ++ G D+ +K +LDEAD M++ QD + S
Sbjct: 120 LKRTTHIVIATPGRLIDL-IERGAVDISHVKTVILDEADEMLSMGFKQDLNRILKFTTKS 178
Query: 253 TCQMMFFSATYGTAVMQFAEIIV-SNPIIIRLLREEESLDNIKQYYVKCKSAEDKYRAIC 311
+ FSAT + + + + +N I + + NI+ + K + ++K I
Sbjct: 179 DRKTWLFSATMPDEIKRIVKTYMDANAPRIEINKNTLVNANIRHQFAKT-TLKEKVADIV 237
Query: 312 NIYGVITIGQAIIFCHTRKTASWLSEKMSKDGHSVAVLSGELTVEQRIAVLDRFRVGLEK 371
+ IIFC T+ A L++++ +G S A L G++ ++R V+ F+ +
Sbjct: 238 TFLEKRQAQRGIIFCRTKAGAQNLAKQLVDEGFSAAALEGDMQQKERDKVMRAFKNESLQ 297
Query: 372 VLITTNVLSRGIDVEQVTLVVNFDMPMDMNRKADCETYLHRIGRTGRFGKAGIAINLI 429
LI+T+V +RGIDV ++ V++ +P + E Y HR GRT R GK G ++ I
Sbjct: 298 YLISTDVSARGIDVRELEFVIHHQLPEQL------EYYTHRSGRTARAGKTGTSLAFI 349
>UniRef50_A0KZD5 Cluster: DEAD/DEAH box helicase domain protein;
n=19; Alteromonadales|Rep: DEAD/DEAH box helicase domain
protein - Shewanella sp. (strain ANA-3)
Length = 487
Score = 170 bits (413), Expect = 8e-41
Identities = 117/376 (31%), Positives = 200/376 (53%), Gaps = 20/376 (5%)
Query: 80 FEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMIAQSQSGTGKTAAF---VL 136
F+ L L +L + G+ +++Q+ +P LA ++++A +Q+GTGKTA+F VL
Sbjct: 24 FDTLGLSSPILNAIAECGYLQLTQVQQQVIP--LALEGKDIMACAQTGTGKTASFALPVL 81
Query: 137 AMLSRVDSNKNYPQVLCLSPTYELAIQTGEVAAKMAKFCPEIKLKYAVRGEELPRGSKIT 196
LS+ ++K + L ++PT ELAIQ K ++F P +K G + K
Sbjct: 82 EQLSKQPNDKPLLRALVMTPTRELAIQVCANIQKYSQFLP-LKTLAVYGGANMNPQRKGV 140
Query: 197 DH---ILIGTPGKMFDWGVKFGMFDMGKIKVFVLDEADVMINRQGHQDQCIRIHKCLPST 253
+ IL+ TPG++FD +F + D+ + V+DEAD M++ G ++ + + +
Sbjct: 141 EQGVDILVATPGRLFDIIGQFHL-DLSSVTTLVIDEADRMLDL-GFVRDIEKVKRLIATE 198
Query: 254 CQMMFFSATYGTAVMQFAEIIVSNPIIIRLLREEESLDNIKQYYVKCKSAEDKYRAICNI 313
Q M FSATY AV Q + +++ P + + E + ++Q + K + +
Sbjct: 199 HQTMLFSATYSDAVKQLSHKMLNQPEWVNVA-ENTTASTVEQLVYRVDKRR-KAELLSEL 256
Query: 314 YGVITIGQAIIFCHTRKTASWLSEKMSKDGHSVAVLSGELTVEQRIAVLDRFRVGLEKVL 373
G Q ++F T++ A L ++++ DG S V G+ T R VLD F+ G +VL
Sbjct: 257 VGRNNWRQVLVFASTKECAEHLLQELTLDGISAGVFHGDKTQGARNRVLDDFKAGKLRVL 316
Query: 374 ITTNVLSRGIDVEQVTLVVNFDMPMDMNRKADCETYLHRIGRTGRFGKAGIAINLIDSPQ 433
+ T+V +RG+D++ + LV+N ++P E Y+HRIGRTGR G +G AI+ + SP
Sbjct: 317 VATDVAARGLDIQALPLVINLELPF------LAEDYVHRIGRTGRAGLSGRAISFV-SPA 369
Query: 434 AMEICTDIEAHFGKKI 449
E+ +IEA G+ +
Sbjct: 370 DDEMLAEIEALIGQTL 385
>UniRef50_Q2J6D3 Cluster: DEAD/DEAH box helicase-like; n=2;
Frankia|Rep: DEAD/DEAH box helicase-like - Frankia sp.
(strain CcI3)
Length = 649
Score = 169 bits (412), Expect = 1e-40
Identities = 125/370 (33%), Positives = 188/370 (50%), Gaps = 23/370 (6%)
Query: 70 PNSPLYSVKTFEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMIAQSQSGTG 129
P SP + TF L ++ + + G IQE LP LA ++I Q+++GTG
Sbjct: 79 PGSP--AAPTFAELGVRAETVSALTEAGIVHAFPIQELTLPLALAR--NDIIGQARTGTG 134
Query: 130 KTAAF----VLAMLSRVDSNKNYPQVLCLSPTYELAIQ-TGEVAAKMAKFCPEIKLKYAV 184
KT AF V +L+ + PQ L + PT EL +Q T +V A+ + Y
Sbjct: 135 KTLAFGVPVVQTVLAAKEGADGRPQALVVVPTRELCVQVTADVTRAGARRGLRVLSVYGG 194
Query: 185 RGEELPRGSKITD--HILIGTPGKMFDWGVKFGMFDMGKIKVFVLDEADVMINRQGHQDQ 242
R E P+ S + I++GTPG++ D + + D+ + VLDEAD M++ G
Sbjct: 195 RAYE-PQLSALRAGVDIVVGTPGRLLDLARQH-VLDLAGVGTLVLDEADEMLDL-GFLPD 251
Query: 243 CIRIHKCLPSTCQMMFFSATYGTAVMQFAEIIVSNPIIIRLLREEE--SLDNIKQYYVKC 300
RI LP+ Q M FSAT V+ A + P+ +R + +E ++ +Q+ +
Sbjct: 252 VERIMSQLPTERQTMLFSATMPGPVISLARRFMKRPVHVRAEQPDEGRTVPTTRQHVFRA 311
Query: 301 KSAEDKYRAICNIYGVITIGQAIIFCHTRKTASWLSEKMSKDGHSVAVLSGELTVEQRIA 360
A DK + + G A++F TR+TA ++E ++K G + A + G+L QR
Sbjct: 312 H-ALDKMEVLARVLQAGGRGLAMVFVRTRRTADKVAEDLAKRGFAAAAVHGDLGQGQREQ 370
Query: 361 VLDRFRVGLEKVLITTNVLSRGIDVEQVTLVVNFDMPMDMNRKADCETYLHRIGRTGRFG 420
L FR G VL+ T+V +RGID+ VT VVN+ P D N YLHRIGRTGR G
Sbjct: 371 ALRAFRSGKVDVLVATDVAARGIDINGVTHVVNYQCPEDEN------VYLHRIGRTGRAG 424
Query: 421 KAGIAINLID 430
++G+AI +D
Sbjct: 425 ESGVAITFVD 434
>UniRef50_A7CUH7 Cluster: DEAD/DEAH box helicase domain protein;
n=1; Opitutaceae bacterium TAV2|Rep: DEAD/DEAH box
helicase domain protein - Opitutaceae bacterium TAV2
Length = 536
Score = 169 bits (412), Expect = 1e-40
Identities = 115/409 (28%), Positives = 205/409 (50%), Gaps = 28/409 (6%)
Query: 64 EIQRKDPNSPLYSVK------TFEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPP 117
E R +P P+ V+ F L L L V MG+ P+ IQ A+P +LA
Sbjct: 113 EHPRSEPIKPVTPVEIPPQDTAFSKLGLNDALAFAVTEMGYTEPTPIQAQAVPAVLAG-- 170
Query: 118 QNMIAQSQSGTGKTAAFVLAMLSRVDSNKNYPQVLCLSPTYELAIQTGEVAAKMAKFCPE 177
+++ +Q+GTGKTAAF L +L ++ +++ + L L PT ELA+Q E K +K+
Sbjct: 171 RDVTGSAQTGTGKTAAFALPILHKLGAHERRLRCLVLEPTRELALQVEEAFQKYSKYTDL 230
Query: 178 IK------LKYAVRGEELPRGSKITDHILIGTPGKMFDWGVKFGMFDMGKIKVFVLDEAD 231
+ Y + E+L RG + + TPG++ D ++ G + +++ VLDE D
Sbjct: 231 TATVVYGGVGYGKQREDLQRGVDV----VAATPGRLLDH-IEQGTMTLADVEILVLDEVD 285
Query: 232 VMINRQGHQDQCIRIHKCLPSTCQMMFFSATYGTAVMQFAEIIVSNPIIIRLLREEESLD 291
M++ G RI + P Q +FFSAT + Q A + +P+ I++ + +
Sbjct: 286 RMLD-MGFLPDVKRIVQQCPQARQTLFFSATLPPELAQLASWALRDPVEIKIGQRRSPAE 344
Query: 292 NIKQYYVKCKSAEDKYRAICNIYGVITIGQAIIFCHTRKTASWLSEKMSKDGHSVAVLSG 351
I + +++ K+ + ++ IIF T+ A ++ ++ ++GH+V V+
Sbjct: 345 TISHAFYPVVASQ-KFDLLIDLLSRTEFKSVIIFTRTKMGADRIAHRLQREGHTVGVIHS 403
Query: 352 ELTVEQRIAVLDRFRVGLEKVLITTNVLSRGIDVEQVTLVVNFDMPMDMNRKADCETYLH 411
+ +R+ L+ F+ G +VL+ T++ +RG+D+ V+ V+N+D+P + E Y+H
Sbjct: 404 DRNQRERVEALEGFKSGKFEVLVATDIAARGLDIAGVSHVINYDVP------ENPEDYVH 457
Query: 412 RIGRTGRFGKAGIAINLIDSPQAMEICTDIEAHFGKKIQLLDIEDAEEI 460
RIGRTGR +G A L+ + IE + +I+ I+ + I
Sbjct: 458 RIGRTGRANASGDAFTLVTEDDVRD-ARSIERYINAEIERKKIDGFDYI 505
>UniRef50_A4LYS0 Cluster: DEAD/DEAH box helicase domain protein;
n=4; Desulfuromonadales|Rep: DEAD/DEAH box helicase
domain protein - Geobacter bemidjiensis Bem
Length = 482
Score = 169 bits (412), Expect = 1e-40
Identities = 118/387 (30%), Positives = 208/387 (53%), Gaps = 23/387 (5%)
Query: 80 FEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMIAQSQSGTGKTAAFVLAML 139
F L + + KG+ GF + IQE ALP L +++ Q+Q+GTGKTA F++++
Sbjct: 3 FTELQIPAEVQKGIDETGFTQCTPIQEKALPLALTG--KDVAGQAQTGTGKTATFLISIF 60
Query: 140 SRVDSN-----KNYPQVLCLSPTYELAIQTGEVAAKMAKFCP-EIKLKYAVRGEELPRGS 193
+++ S +++P+ L L+PT EL +Q + A + K+ I+ Y R +
Sbjct: 61 TKLLSQAKTGGEHHPRALILAPTRELVVQIEKDAQALGKYTGFNIQAIYGGVDYMKQRDA 120
Query: 194 -KITDHILIGTPGKMFDWGVKFGMFDMGKIKVFVLDEADVMINRQGHQDQCIRIHKCLP- 251
K I+IGTPG++ D+ +K ++ + ++ V+DEAD M + D + + P
Sbjct: 121 LKAGADIVIGTPGRLIDY-LKQKVYSVKDVEALVIDEADRMFDMGFIADLRFILRRLPPY 179
Query: 252 STCQMMFFSATYGTAVMQFAEIIVSNPIIIRLLREEESLDNIKQ--YYVKCKSAEDKYRA 309
Q + FSAT T VM+ A ++ P + + E+ + + ++Q Y+V S ++K+
Sbjct: 180 DKRQNLLFSATLNTRVMELAYEFMNMPEKVSVTPEQMTAERVEQVLYHV---SRKEKFPL 236
Query: 310 ICNIYGVITIGQAIIFCHTRKTASWLSEKMSKDGHSVAVLSGELTVEQRIAVLDRFRVGL 369
+ + + + + +IF +T++ A +L ++++ + V+SG++ +R+ +L F+ G
Sbjct: 237 LLGLLRKMGMERTMIFVNTKREAEYLQDRLNANEFPGKVISGDVEQRKRMKILADFKDGT 296
Query: 370 EKVLITTNVLSRGIDVEQVTLVVNFDMPMDMNRKADCETYLHRIGRTGRFGKAGIAINLI 429
++I T+V SRGI +E V+ V+N+D+P DCE Y+HRIGRT R G G+AI+
Sbjct: 297 LPIMIATDVASRGIHIEGVSHVINYDLPQ------DCEDYVHRIGRTARAGAEGMAISFA 350
Query: 430 DSPQAMEICTDIEAHFGKKIQLLDIED 456
D A I IE +KI ED
Sbjct: 351 DEDGAFYI-EPIEDFIKQKIPTEWAED 376
>UniRef50_A0RUV7 Cluster: Superfamily II helicase; n=3;
Thermoprotei|Rep: Superfamily II helicase - Cenarchaeum
symbiosum
Length = 434
Score = 169 bits (412), Expect = 1e-40
Identities = 117/363 (32%), Positives = 184/363 (50%), Gaps = 22/363 (6%)
Query: 80 FEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMIAQSQSGTGKTAAFVLAML 139
FE L +K N+L + MGF IQE A+P LL ++++ Q+ +GTGKT A+ ++ML
Sbjct: 4 FEELGIKQNVLDALRDMGFEKAFPIQEAAIPVLLTG--RDVVGQAHTGTGKTGAYSISML 61
Query: 140 SRVDSNKNYPQVLCLSPTYELAIQTGEVAAKMAKFCPEIKL------KYAVRGEELPRGS 193
+ Q L ++PT ELA+Q E K AK+ + V+ + L RG+
Sbjct: 62 QEIKEGGGI-QGLIVAPTRELAVQITEEVKKFAKYTKVRPVAIYGGQSMGVQLDALKRGA 120
Query: 194 KITDHILIGTPGKMFDWGVKFGMFDMGKIKVFVLDEADVMINRQGHQDQCIRIHKCLPST 253
+I L+ TPG++ D +K G + ++ VLDEAD M++ G D I P
Sbjct: 121 EI----LVATPGRLIDH-IKRGSISIDRVTHLVLDEADTMLD-MGFIDDIQFILDLTPDE 174
Query: 254 CQMMFFSATYGTAVMQFAEIIVSNPIIIRLLREEESLDNIKQYYVKCKSAEDKYRAICNI 313
M FSAT +++ +E + NP L ++ S + I Q Y+ + E K + +
Sbjct: 175 KVMSLFSATMPIEILRLSEEYLKNPKQFLLDADDLSGEGIDQSYLVIRDRE-KMDYLVDF 233
Query: 314 YGVITIGQAIIFCHTRKTASWLSEKMSKDGHSVAVLSGELTVEQRIAVLDRFRVGLEKVL 373
GQ I+FC T+ ++ + K + + G+++ +R + RFR ++L
Sbjct: 234 IKENGKGQTIVFCSTKYRTRDVARMLHKRNYGAVAIEGDMSQHRREQSMSRFRTAKAQIL 293
Query: 374 ITTNVLSRGIDVEQVTLVVNFDMPMDMNRKADCETYLHRIGRTGRFGKAGIAINLIDSPQ 433
+ T+V +RGIDV +V LVVN+D+P N++ Y HRIGRT R G G AI L+
Sbjct: 294 VATDVAARGIDVPRVALVVNYDVP---NQEM---IYFHRIGRTARAGAKGRAITLVSYSS 347
Query: 434 AME 436
E
Sbjct: 348 VSE 350
>UniRef50_Q2BP56 Cluster: Putative ATP-dependent RNA helicase; n=1;
Neptuniibacter caesariensis|Rep: Putative ATP-dependent
RNA helicase - Neptuniibacter caesariensis
Length = 427
Score = 169 bits (411), Expect = 1e-40
Identities = 123/395 (31%), Positives = 205/395 (51%), Gaps = 21/395 (5%)
Query: 76 SVKTFEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMIAQSQSGTGKTAAFV 135
S +F L L P L + +G+ P+ IQ A+P +L +++A++Q+GTGKTA+F
Sbjct: 2 SASSFAELALCPELQFTLKNLGYEQPTPIQSQAIPLVLRG--DDLLAEAQTGTGKTASFA 59
Query: 136 LAMLSRVDSNK--NYPQV--LCLSPTYELAIQTGEVAAKMAKFCPE--IKLKYAVRGEEL 189
L ++ ++ N Y V L L+PT ELAIQ + + + I + V E
Sbjct: 60 LPIIEKLSKNPIDGYRPVRALVLAPTRELAIQVADNTLEYGRDLGMRVISVYGGVPVENQ 119
Query: 190 PRGSKITDHILIGTPGKMFDWGVKFGMFDMGKIKVFVLDEADVMINRQGHQDQCIRIHKC 249
+ K IL+ TPG++ D ++ + K++ VLDEAD M++ G D +I
Sbjct: 120 IKRLKRGTDILVATPGRLLDL-LRQKAISLEKLEYLVLDEADRMLDL-GFIDPIQKIMDY 177
Query: 250 LPSTCQMMFFSATYGTAVMQFAEIIVSNPIIIRLLREEESLDNIKQYYVKCKSAEDKYRA 309
Q + F+AT +V AE ++NP I++ + I+Q+ + + K
Sbjct: 178 AADDRQTLLFTATADESVEVLAEFYLNNPTKIKVTPRNSTAKQIRQFAYQVDYGQ-KADI 236
Query: 310 ICNIYGVITIGQAIIFCHTRKTASWLSEKMSKDGHSVAVLSGELTVEQRIAVLDRFRVGL 369
+ + GQ ++F T+K L++ + K+G + A + GE + +R+ +L+ F G
Sbjct: 237 LSYLITEGKWGQTLVFVRTKKRVDELTQYLCKEGINAAAIHGEKSQRERVRMLNEFIAGD 296
Query: 370 EKVLITTNVLSRGIDVEQVTLVVNFDMPMDMNRKADCETYLHRIGRTGRFGKAGIAINLI 429
VL+ T+V +RG+D+E + VVN+D+P N+ E Y+HRIGRTGR G+ G A++L+
Sbjct: 297 LHVLVATDVAARGLDIESLPYVVNYDLP---NQP---EAYVHRIGRTGRAGETGEAVSLV 350
Query: 430 DSPQAMEICTDIEAHFGKKIQLLD---IEDAEEIE 461
+P E IE +KI+L IED + +E
Sbjct: 351 -APAEREFLQRIEKLIKQKIKLRPVPRIEDGKRLE 384
>UniRef50_A3JG19 Cluster: ATP-dependent RNA helicase; n=1;
Marinobacter sp. ELB17|Rep: ATP-dependent RNA helicase -
Marinobacter sp. ELB17
Length = 463
Score = 169 bits (411), Expect = 1e-40
Identities = 118/384 (30%), Positives = 203/384 (52%), Gaps = 27/384 (7%)
Query: 80 FEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMIAQSQSGTGKTAAFVLAML 139
F L+L L + + A+GF + IQ LP LA Q++I Q+Q+GTGKTAAF++ +
Sbjct: 44 FSDLNLDHRLQQAIAAIGFEYCTPIQAETLPWTLAC--QDLIGQAQTGTGKTAAFLITAI 101
Query: 140 SR-----VDSNKNY---PQVLCLSPTYELAIQTGEVAAKMAKFCPEIKLKYAVRGEELPR 191
++ +K + P+VL L+PT ELA+Q + A ++ K+ V G +
Sbjct: 102 QTMLETPIEDSKRFASEPRVLALAPTRELAMQIAKDAEQLCAHTGH-KVVTVVGGMHYDK 160
Query: 192 G-----SKITDHILIGTPGKMFDWGVKFGMFDMGKIKVFVLDEADVMINRQGHQDQCIRI 246
+++ D IL+ TPG++ D+ +F + +I + +LDEAD M++ D I
Sbjct: 161 QRDQLQNEVVD-ILVATPGRLIDFLGSQDVF-LDQIDILILDEADRMLDMGFIPDVKRII 218
Query: 247 HKCLPSTC-QMMFFSATYGTAVMQFAEIIVSNPIIIRLLREEESLDNIKQYYVKCKSAED 305
KC P Q + FSAT+ V+ A + + + + E+++ + ++Q V ++
Sbjct: 219 RKCTPKEDRQTLLFSATFNQDVLNLASMWTQSAEFVEIEPEQKTAERVEQT-VYLVGDDE 277
Query: 306 KYRAICNIYGVITIGQAIIFCHTRKTASWLSEKMSKDGHSVAVLSGELTVEQRIAVLDRF 365
K R + N + +A++F + R L E + G SV+++SGE+ +R+ L++F
Sbjct: 278 KLRVLVNYLKRPEVDKALVFANRRDQCRDLEEDLRNQGVSVSLMSGEIAQAKRLKTLEQF 337
Query: 366 RVGLEKVLITTNVLSRGIDVEQVTLVVNFDMPMDMNRKADCETYLHRIGRTGRFGKAGIA 425
+ G +VL+ T+V RGI V VT V N+++P + E Y+HRIGRTGR G G++
Sbjct: 338 KAGSIQVLVATDVAGRGIHVNGVTHVFNYNLP------DNAEDYVHRIGRTGRAGSTGVS 391
Query: 426 INLIDSPQAMEICTDIEAHFGKKI 449
I+ + + IE + G+K+
Sbjct: 392 ISFAGEDDSFAL-PAIEKYIGQKL 414
>UniRef50_A2U4F0 Cluster: Putative ATP-dependent RNA helicase; n=2;
Polaribacter|Rep: Putative ATP-dependent RNA helicase -
Polaribacter dokdonensis MED152
Length = 411
Score = 169 bits (411), Expect = 1e-40
Identities = 124/386 (32%), Positives = 203/386 (52%), Gaps = 28/386 (7%)
Query: 80 FEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMIAQSQSGTGKTAAFVLAML 139
F + L ++ K + F+ P+ +QE +P +L +N+I +Q+GTGKTAAF L ++
Sbjct: 3 FSDIPLNKSIQKAIAEARFHKPTLVQEKTIPLVL--DKKNVIVAAQTGTGKTAAFALPII 60
Query: 140 S----RVDSNKNYPQV--LCLSPTYELAIQTGEVAAKMAKFCPEIKLKYAVRGEELPRGS 193
+ + D+ K ++ L ++PT ELAIQ E +K+ ++ G L
Sbjct: 61 NLLFDKQDAEKGEKKIKALVITPTRELAIQILENFKSYSKYS-NLRSTAVFGGVSLEPQK 119
Query: 194 KITDH---ILIGTPGKMFDWGVKFGMFDMGKIKVFVLDEADVMINRQGHQDQCIRIHKCL 250
+I IL+ TPG++ D ++ G D+ ++++FVLDEAD+M++ G + +I K
Sbjct: 120 EILAKGVDILVATPGRLIDLQMQ-GNIDLSQLEIFVLDEADLMLD-MGFINDIKKIEKLC 177
Query: 251 PSTCQMMFFSATYGTAVMQFAEIIVSNPIIIRLLREEESLDNIKQ--YYVKCKSAEDKYR 308
P Q + FSAT + + ++ IV N + + EE + NI Q YY+ K+ D
Sbjct: 178 PRKKQTLLFSATIPEKIDELSKSIVKNATKVDINPEETTAKNIGQLLYYLPKKNKTD--- 234
Query: 309 AICNIYGVITI-GQAIIFCHTRKTASWLSEKMSKDGHSVAVLSGELTVEQRIAVLDRFRV 367
+C TI G+ IIF T+ L + + K+G++VA + G+ T R ++ F+
Sbjct: 235 -LCLHLLRNTINGKIIIFRRTKFAVDKLEQTLIKNGYNVASIHGDKTQGVRNKAIEDFKS 293
Query: 368 GLEKVLITTNVLSRGIDVEQVTLVVNFDMPMDMNRKADCETYLHRIGRTGRFGKAGIAIN 427
+LI T+V +RGID+ V ++NFD+P E Y+HRIGRTGR GK+GIA +
Sbjct: 294 KKASILIATDVAARGIDITNVDAIINFDIPNVP------EIYVHRIGRTGRAGKSGIAFS 347
Query: 428 LIDSPQAMEICTDIEAHFGKKIQLLD 453
SP IE K I++++
Sbjct: 348 FC-SPDENNYIASIENLIEKSIKVIE 372
>UniRef50_P21693 Cluster: ATP-independent RNA helicase dbpA; n=195;
cellular organisms|Rep: ATP-independent RNA helicase
dbpA - Escherichia coli (strain K12)
Length = 457
Score = 169 bits (411), Expect = 1e-40
Identities = 107/353 (30%), Positives = 189/353 (53%), Gaps = 15/353 (4%)
Query: 85 LKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMIAQSQSGTGKTAAFVLAMLSRVDS 144
L P L + +G+ + +Q ALP +LA +++ Q+++G+GKTAAF L +L ++D+
Sbjct: 10 LPPAQLTNLNELGYLTMTPVQAAALPAILAG--KDVRVQAKTGSGKTAAFGLGLLQQIDA 67
Query: 145 NKNYPQVLCLSPTYELAIQTGEVAAKMAKFCPEIKLKYAVRGEE--LPRGS-KITDHILI 201
+ Q L L PT ELA Q ++A+F P K+ G+ + R S + HI++
Sbjct: 68 SLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQHAPHIIV 127
Query: 202 GTPGKMFDWGVKFGMFDMGKIKVFVLDEADVMINRQGHQDQCIRIHKCLPSTCQMMFFSA 261
TPG++ D K G + + V+DEAD M++ G D + + P++ Q + FSA
Sbjct: 128 ATPGRLLDHLQK-GTVSLDALNTLVMDEADRMLD-MGFSDAIDDVIRFAPASRQTLLFSA 185
Query: 262 TYGTAVMQFAEIIVSNPIIIRLLREEESLDNIKQYYVKCKSAEDKYRAICNIYGVITIGQ 321
T+ A+ + + +P+ I + ++L I+Q + + S++ K + + +
Sbjct: 186 TWPEAIAAISGRVQRDPLAIEI-DSTDALPPIEQQFYET-SSKGKIPLLQRLLSLHQPSS 243
Query: 322 AIIFCHTRKTASWLSEKMSKDGHSVAVLSGELTVEQRIAVLDRFRVGLEKVLITTNVLSR 381
++FC+T+K + + +++ G S L G+L R L RF G +VL+ T+V +R
Sbjct: 244 CVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDVAAR 303
Query: 382 GIDVEQVTLVVNFDMPMDMNRKADCETYLHRIGRTGRFGKAGIAINLIDSPQA 434
G+D++ + LVVNF++ D E ++HRIGRT R G +G+AI+ +A
Sbjct: 304 GLDIKSLELVVNFELAWDP------EVHVHRIGRTARAGNSGLAISFCAPEEA 350
>UniRef50_Q7MT81 Cluster: ATP-dependent RNA helicase, DEAD/DEAH box
family; n=9; Bacteroidales|Rep: ATP-dependent RNA
helicase, DEAD/DEAH box family - Porphyromonas
gingivalis (Bacteroides gingivalis)
Length = 427
Score = 169 bits (410), Expect = 2e-40
Identities = 116/385 (30%), Positives = 198/385 (51%), Gaps = 22/385 (5%)
Query: 80 FEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMIAQSQSGTGKTAAFVLAML 139
F+ L+L +L G+ AM F + +Q +P +L +++IA +Q+GTGKTAA++L +L
Sbjct: 3 FDELNLGDEVLDGLDAMNFIETTPVQAATIPPILEG--RDVIACAQTGTGKTAAYLLPIL 60
Query: 140 SRVDSNKNYPQVL---CLSPTYELAIQTGEVAAKMAKFCPEIKLKY-----AVRGEELPR 191
R+ + + V+ ++PT ELA Q + + F P + V E+ R
Sbjct: 61 DRLSAGEFASDVVNAVIMAPTRELAQQIDQQVEGFSYFMPVSAVAIYGGTDGVAWEQQRR 120
Query: 192 GSKITDHILIGTPGKMFDWGVKFGMFDMGKIKVFVLDEADVMINRQGHQDQCIRIHKCLP 251
G + I+I TPG++ + G D+ + FVLDEAD M++ G D ++I+K LP
Sbjct: 121 GMAMGADIVIATPGRLISH-LNLGSADLSHVSYFVLDEADRMLD-MGFFDDIMQIYKQLP 178
Query: 252 STCQMMFFSATYGTAVMQFAEIIVSNPIIIRLLREEESLDNIKQYYVKCKSAEDKYRAIC 311
S+CQ + FSAT + + A I+ +PI + + ++ Y+ C A+ K +
Sbjct: 179 SSCQTVMFSATMPPKIRKLAASILRDPIEVEIAISRPPESIMQSAYI-CHEAQ-KLPILR 236
Query: 312 NIYGVITIGQAIIFCHTRKTASWLSEKMSKDGHSVAVLSGELTVEQRIAVLDRFRVGLEK 371
++ + IIF + L+ + K G +VA + +L QR V+ F+ G
Sbjct: 237 KLFEQSAPKRTIIFASAKLKVRELTSTLRKMGFNVADMHSDLEQSQREQVMRDFKNGYVD 296
Query: 372 VLITTNVLSRGIDVEQVTLVVNFDMPMDMNRKADCETYLHRIGRTGR-FGKAGIAINLID 430
VL+ T++++RGID++ + +V+N+D+P D E Y+HRIGRT R G+AI +
Sbjct: 297 VLVATDIVARGIDIDNIRVVINYDIPHDP------EDYVHRIGRTARGTNGEGLAITFVS 350
Query: 431 SPQAMEICTDIEAHFGKKIQLLDIE 455
+ + IE GK + L ++
Sbjct: 351 EEEQSDF-HKIETFLGKSVYKLPVD 374
>UniRef50_Q0M1B5 Cluster: Helicase-like:DEAD/DEAH box helicase-like;
n=11; Alphaproteobacteria|Rep: Helicase-like:DEAD/DEAH
box helicase-like - Caulobacter sp. K31
Length = 678
Score = 169 bits (410), Expect = 2e-40
Identities = 116/360 (32%), Positives = 185/360 (51%), Gaps = 23/360 (6%)
Query: 80 FEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMIAQSQSGTGKTAAFVLAML 139
F L L P L+ V G+ + IQ A+P LA Q+++ +Q+GTGKTAAF L ++
Sbjct: 4 FSELGLSPTTLQAVADTGYTTATPIQAAAIPVALAG--QDVLGIAQTGTGKTAAFTLPLI 61
Query: 140 SRVDSNK---NYPQVLCLSPTYELAIQTGEVAAKMAKFCPEIKLKYA--VRGEELPRGSK 194
++ + + P+ L ++PT ELA Q VA+ K+ KL +A + G K
Sbjct: 62 DKLMNGRAKARMPRALVIAPTRELADQ---VASSFEKYAKGTKLSWALLIGGVSFGDQEK 118
Query: 195 ITDH---ILIGTPGKMFDWGVKFGMFDMGKIKVFVLDEADVMINRQGHQDQCIRIHKCLP 251
D +LI TPG++ D + G M ++ V+DEAD M++ G RI K P
Sbjct: 119 KLDRGVDVLIATPGRLLDHFER-GKLLMTGVQFLVVDEADRMLD-MGFIPDIERIFKMTP 176
Query: 252 STCQMMFFSATYGTAVMQFAEIIVSNPIIIRLLREEESLDNIKQYYVKCKSAEDKYR--A 309
Q +FFSAT + + + + +P+ I R + +NI Q VK S++ K + A
Sbjct: 177 PKKQTLFFSATMPPEITRLTKQFLKDPVRIEASRPATTNENITQLMVKVPSSDPKAKRLA 236
Query: 310 ICNIYGVITIGQAIIFCHTRKTASWLSEKMSKDGHSVAVLSGELTVEQRIAVLDRFRVGL 369
+ + I I+FC+ + +++ + G A + G+L QR L FR G
Sbjct: 237 LRALIEKAQIETGIVFCNRKTEVDVVAKSLKSHGFDAAAIHGDLDQSQRTKTLAAFRDGS 296
Query: 370 EKVLITTNVLSRGIDVEQVTLVVNFDMPMDMNRKADCETYLHRIGRTGRFGKAGIAINLI 429
K+L+ ++V +RG+D+ V+ V N+D+P AD Y+HRIGRTGR G++G+ L+
Sbjct: 297 LKILVASDVAARGLDIPAVSHVFNYDVP----HHAD--DYVHRIGRTGRAGRSGVTYMLV 350
>UniRef50_A1UCR5 Cluster: DEAD/DEAH box helicase domain protein;
n=31; Actinobacteria (class)|Rep: DEAD/DEAH box helicase
domain protein - Mycobacterium sp. (strain KMS)
Length = 507
Score = 169 bits (410), Expect = 2e-40
Identities = 121/370 (32%), Positives = 189/370 (51%), Gaps = 33/370 (8%)
Query: 79 TFEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMIAQSQSGTGKTAAFVLAM 138
TF +L ++ + + + G + P IQE LP LA ++I Q+++G GKT AF + +
Sbjct: 11 TFASLGVRDEICRALAEEGIHQPFAIQELTLPMALAG--DDLIGQARTGMGKTYAFGVPL 68
Query: 139 LSRV--DSNKNY---PQVLCLSPTYELAIQTGEVAAKMAKFCP--EIKLK---------Y 182
L RV D+ K P+ L + PT EL +Q + AK+ + KL Y
Sbjct: 69 LQRVTTDTEKELSGIPRALIVVPTRELCLQVHSDLSLAAKYLTAGDRKLSVVSIYGGRPY 128
Query: 183 AVRGEELPRGSKITDHILIGTPGKMFDWGVKFGMFDMGKIKVFVLDEADVMINRQGHQDQ 242
+ E L +G+ + ++GTPG++ D + G +G + V VLDEAD M++ G
Sbjct: 129 EPQIESLRKGADV----VVGTPGRLLDLAQQ-GHLQLGGLSVLVLDEADEMLDL-GFLPD 182
Query: 243 CIRIHKCLPSTCQMMFFSATYGTAVMQFAEIIVSNPIIIRLLREEESL--DNIKQYYVKC 300
RI + P T Q M FSAT ++ A ++ P IR + S D Q+ +
Sbjct: 183 IERILRQTPDTRQAMLFSATMPDPIITLARTFMNQPTHIRAESPQSSATHDTTAQFAYRA 242
Query: 301 KSAEDKYRAICNIYGVITIGQAIIFCHTRKTASWLSEKMSKDGHSVAVLSGELTVEQRIA 360
A DK + I G +IF T++TA +++++++ G V + G+L R
Sbjct: 243 H-ALDKVEMVSRILQAEGRGATMIFTRTKRTAQKVADELAERGFKVGAVHGDLGQGAREK 301
Query: 361 VLDRFRVGLEKVLITTNVLSRGIDVEQVTLVVNFDMPMDMNRKADCETYLHRIGRTGRFG 420
L FR G VL+ T+V +RGID++ +T V+NF +P D + Y+HRIGRTGR G
Sbjct: 302 ALKSFRTGEVDVLVATDVAARGIDIDDITHVINFQIPEDE------QAYVHRIGRTGRAG 355
Query: 421 KAGIAINLID 430
K G+A+ L+D
Sbjct: 356 KTGVAVTLVD 365
>UniRef50_Q7QTB2 Cluster: GLP_15_13424_14974; n=2; Giardia
intestinalis|Rep: GLP_15_13424_14974 - Giardia lamblia
ATCC 50803
Length = 516
Score = 169 bits (410), Expect = 2e-40
Identities = 114/391 (29%), Positives = 200/391 (51%), Gaps = 21/391 (5%)
Query: 80 FEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMIAQSQSGTGKTAAFVLAML 139
F +L+ +L+ + + GF +PS +Q A+P L +++I Q++SG GKTA FVL++L
Sbjct: 130 FSDFNLREEVLQAIISNGFESPSDVQSMAIPPALEH--KDVICQAKSGKGKTAVFVLSLL 187
Query: 140 SRVDSNK--NYPQVLCLSPTYELAIQTGEVAAKMAKFCPEIKLKY--AVRGEELP---RG 192
+D + Q L L T+ELA+Q + + A P+IK K A+ G + R
Sbjct: 188 HMIDPQAAPHKVQALVLCNTHELAMQIYKEFTRFAINLPDIKDKILCAIGGVTVSLHVRA 247
Query: 193 SKITD-HILIGTPGKMFDWGVKFGMFDMGKIKVFVLDEADVMINRQGHQDQCIRIHKCLP 251
K D I +GT G++ D V+ G D+ IK VLDE D + + + + + +P
Sbjct: 248 LKSKDVSIAVGTIGRVSDL-VERGALDLSFIKYLVLDEFDALFKEEDNFKKIAGLISKMP 306
Query: 252 STCQMMFFSATYGTAVMQFAEIIVSNPIIIRLLREEES-LDNIKQYYVKCKSAEDKYRAI 310
+T Q + F+AT+ +FA I+ + + L+ +++ L + QYY E K +
Sbjct: 307 ATHQTLLFTATFTEHSEKFARSILRDGYVAILVDDKQLVLTGLMQYYFNAPE-EKKLHIL 365
Query: 311 CNIYGVITIGQAIIFCHTRKTASWLSEKMSKDGHSVAVLSGELTVEQRIAVLDRFRVGLE 370
+ ++ QA+IF + L+E + ++GH G++ ++R V F+
Sbjct: 366 LDCLRLLPFSQAVIFARDISRVTALNEFLKEEGHECVCFFGKMHHKKREEVFQGFKDKKA 425
Query: 371 KVLITTNVLSRGIDVEQVTLVVNFDMPMDMNRKADCETYLHRIGRTGRFGKAGIAINLID 430
++L++T++ RG+D V LV+++DMP + YLHR GR GRF AG+ + +
Sbjct: 426 RILVSTDIFQRGVDFANVNLVIHYDMP------DSSDAYLHRSGRAGRFETAGMVLLFVG 479
Query: 431 SPQAMEICTDIEAHFGKKIQLLDIEDAEEIE 461
+ + E+ + I+ F I ++ EEI+
Sbjct: 480 TAEESEMLSQIQGRFATSIP--QVKSPEEID 508
>UniRef50_Q978T9 Cluster: ATP-dependent RNA helicase; n=3;
Thermoplasma|Rep: ATP-dependent RNA helicase -
Thermoplasma volcanium
Length = 373
Score = 169 bits (410), Expect = 2e-40
Identities = 104/357 (29%), Positives = 192/357 (53%), Gaps = 17/357 (4%)
Query: 77 VKTFEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMIAQSQSGTGKTAAFVL 136
+K FE +L+ L++ + G++ P+++Q A+P LA +++ +S++G+GKTAA+++
Sbjct: 1 MKGFEEFNLRNELIESIRGTGYSEPTEVQSMAIPIALAG--SDLVVRSKTGSGKTAAYLI 58
Query: 137 AMLSRVDSNKNYPQVLCLSPTYELAIQTGEVAAKMAKFCPEIKLKYAVRGEELPRGSKIT 196
+++ K + L L PT ELA+Q +V+ + K I+ G + + ++
Sbjct: 59 PIINNTAKEKGI-RALILLPTRELAVQVAKVSEALGKRSG-IRTVVVYGGVSINKQIELI 116
Query: 197 ---DHILIGTPGKMFDWGVKFGMFDMGKIKVFVLDEADVMINRQGHQDQCIRIHKCLPST 253
+I++GTPG+ D + G+ + K+ FVLDEAD M++ G + +I LP
Sbjct: 117 LRGANIIVGTPGRTLDL-IDRGILNFDKVSYFVLDEADEMLD-MGFIEDIKKIINVLPVE 174
Query: 254 CQMMFFSATYGTAVMQFAEIIVSNPIIIRLLREEESLDNIKQYYVKCKSAEDKYRAICNI 313
Q FSAT + +++ A+ + N I+ L ++E +++ I Y + E K R + +
Sbjct: 175 RQSFLFSATIPSEIIELAKGFMHNEEILFLSKDEVTVNGIDHNYAVSRR-ERKLRTLFSY 233
Query: 314 YGVITIGQAIIFCHTRKTASWLSEKMSKDGHSVAVLSGELTVEQRIAVLDRFRVGLEKVL 373
++IIF T+ A+ + E + G ++ G+LT QR L RF+ + L
Sbjct: 234 IDKYKPEKSIIFSRTKAGANMIYEALINHGQDAVIMHGDLTQAQREKALYRFK-NFGRFL 292
Query: 374 ITTNVLSRGIDVEQVTLVVNFDMPMDMNRKADCETYLHRIGRTGRFGKAGIAINLID 430
+ TNV +RG+D+ ++ ++N+D+P D Y+HR+GRT R G AG A +++
Sbjct: 293 VATNVAARGLDIGGISDIINYDVP------DDPRVYVHRVGRTARMGAAGRAFTIVE 343
>UniRef50_A6DHU9 Cluster: DEAD/DEAH box helicase-like protein; n=1;
Lentisphaera araneosa HTCC2155|Rep: DEAD/DEAH box
helicase-like protein - Lentisphaera araneosa HTCC2155
Length = 412
Score = 168 bits (409), Expect = 2e-40
Identities = 119/394 (30%), Positives = 211/394 (53%), Gaps = 21/394 (5%)
Query: 79 TFEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMIAQSQSGTGKTAAFVLAM 138
+FE L+ L + V + F+ + IQ A+P L ++++A+SQ+GTGKT AF +
Sbjct: 2 SFEQLNFPDYLSRAVDNLNFSEATDIQAKAIP--LIQEGKDLLAESQTGTGKTLAFSFPL 59
Query: 139 LSRVDS---NKNYPQVL--CLSPTYELAIQTGEVAAKMAKFCPE-IKLKYAVRGEELP-- 190
+ R+++ K +L L PT ELA+Q + A+F IK + GE +
Sbjct: 60 IERINTLPPKKKKISILGLVLVPTRELALQVEKAFTNYAEFSLRPIKTATLIGGENIDGQ 119
Query: 191 -RGSKITDHILIGTPGKMFDWGVKFGMFDMGKIKVFVLDEADVMINRQGHQDQCIRIHKC 249
R ++ +LI TPG++ + + G + ++++ +LDEAD M++ G D+ + +
Sbjct: 120 IRKLRMGLDVLIATPGRIIEL-INLGEVRLVELEMLILDEADKMLDL-GFADELKELLEA 177
Query: 250 LPSTCQMMFFSATYGTAVMQFAEIIVSNPIIIRLLREEESLDNIKQYYVKCKSAEDKYRA 309
LP Q + FSAT V Q AE ++ + +R+ R++ + DNI+Q ++ A + +
Sbjct: 178 LPKKRQNLLFSATLPQKVQQLAEEFLNAAVELRISRDQITGDNIEQRVIEV-DANLRRQV 236
Query: 310 ICNIYGVITIGQAIIFCHTRKTASWLSEKMSKDGHSVAVLSGELTVEQRIAVLDRFRVGL 369
+ ++ IIF ++++A L+ K+ K G G+LT ++RI VL RF+
Sbjct: 237 LQKLFKDEQWKHTIIFVSSKRSAFNLANKLKKAGIQAQDFHGDLTQDERIKVLKRFQNKD 296
Query: 370 EKVLITTNVLSRGIDVEQVTLVVNFDMPMDMNRKADCETYLHRIGRTGRFGKAGIAINLI 429
+LI T++ +RGID+ +++ V+N+D+P Y+HRIGRTGR G+ G+AI+ I
Sbjct: 297 FPILIATDIAARGIDISKLSHVINYDLPRSP------MDYVHRIGRTGRAGQKGVAISFI 350
Query: 430 DSPQAMEICTDIEAHFGKKIQLLDIEDAEEIEKI 463
+P + I+ G K++ IE ++I +
Sbjct: 351 -NPATEDHFKTIQKQAGIKLEKERIEGFDQITPV 383
>UniRef50_A5FST0 Cluster: DEAD/DEAH box helicase domain protein;
n=8; Bacteria|Rep: DEAD/DEAH box helicase domain protein
- Dehalococcoides sp. BAV1
Length = 561
Score = 168 bits (409), Expect = 2e-40
Identities = 110/380 (28%), Positives = 197/380 (51%), Gaps = 16/380 (4%)
Query: 79 TFEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMIAQSQSGTGKTAAFVLAM 138
+FE+ + P ++ GV A G+ P+ IQ A+P ++A ++I +Q+GTGKTAA+ L +
Sbjct: 2 SFESFNFDPAVMAGVRACGYKEPTPIQAQAIPPIMAG--HDVIGLAQTGTGKTAAYALPI 59
Query: 139 LSRVDSN-KNYPQVLCLSPTYELAIQTGEVAAKMAKFCP--EIKLKYAVRGEELPRGSKI 195
+ ++ S + + L ++PT ELA Q + + + E + V ++ R +
Sbjct: 60 IQKMLSTPRGRVRTLVIAPTRELACQISDSFRSLGQRARIRECSIYGGVNMDQQIRRLRS 119
Query: 196 TDHILIGTPGKMFDWGVKFGMFDMGKIKVFVLDEADVMINRQGHQDQCIRIHKCLPSTCQ 255
+++ PG++ D + G D+ ++ ++DEAD M + G Q I KCL Q
Sbjct: 120 GVDVVVACPGRLLDH-IWRGTIDVCGVETLIIDEADRMFD-MGFQPDIQSILKCLVQPHQ 177
Query: 256 MMFFSATYGTAVMQFAEIIVSNPIIIRLLREEESLDNIKQYYVKCKSAEDKYRAICNIYG 315
+ FSAT V + +NP+ +++ + + ++ KS + K + I
Sbjct: 178 TLLFSATMPPEVRKLTLETQTNPVTVQV-GTQSPVSSVSHSVYPVKSHQ-KTPLLLEILK 235
Query: 316 VITIGQAIIFCHTRKTASWLSEKMSKDGHSVAVLSGELTVEQRIAVLDRFRVGLEKVLIT 375
+ +IF T+ A L++++SK G + A L G L+ +R AV++ FR G K+L+
Sbjct: 236 TVETKSVLIFARTKYGAENLADEISKAGFTTASLQGNLSQNRRHAVMEGFRRGNFKILVA 295
Query: 376 TNVLSRGIDVEQVTLVVNFDMPMDMNRKADCETYLHRIGRTGRFGKAGIAINLIDSPQAM 435
T++ +RG+D++ ++ V+N+DMP E Y HRIGRTGRF + G A +L+
Sbjct: 296 TDIAARGLDIDHISHVINYDMP------DSPEDYTHRIGRTGRFDRTGQAFSLVTGRDG- 348
Query: 436 EICTDIEAHFGKKIQLLDIE 455
++ DI+ IQ L ++
Sbjct: 349 DMVRDIQRLLSSPIQRLRVD 368
>UniRef50_A1KUM8 Cluster: Putative ATP-dependent RNA helicase; n=4;
Neisseria|Rep: Putative ATP-dependent RNA helicase -
Neisseria meningitidis serogroup C / serotype 2a (strain
ATCC 700532 /FAM18)
Length = 483
Score = 168 bits (409), Expect = 2e-40
Identities = 114/392 (29%), Positives = 207/392 (52%), Gaps = 28/392 (7%)
Query: 80 FEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMIAQSQSGTGKTAAFVLAML 139
F +L L L+ + A G+ P+ IQ A+P LA +++A +Q+GTGKTAAF+L L
Sbjct: 31 FSSLGLGTELVSALTAQGYENPTPIQAAAIPKALAG--HDLLAAAQTGTGKTAAFMLPSL 88
Query: 140 SRVD-------SNKNYP-QVLCLSPTYELAIQTGEVAAKMAKFCPEIKLKYAVRGEELPR 191
R+ S +P ++L L+PT ELA Q + K P L++ V +
Sbjct: 89 ERLKRYATASTSPAMHPVRMLVLTPTRELADQIDQNVQSYIKNLP---LRHTVLFGGMNM 145
Query: 192 GSKITD-----HILIGTPGKMFDWGVKFGMFDMGKIKVFVLDEADVMINRQGHQDQCIRI 246
+ D I++ T G++ D VK + K+++ VLDEAD M++ G D +I
Sbjct: 146 DKQTADLRAGCEIVVATVGRLLDH-VKQKNISLNKVEIVVLDEADRMLD-MGFIDDIRKI 203
Query: 247 HKCLPSTCQMMFFSATYGTAVMQFAEIIVSNPIIIRLLREEESLDNIKQYYVKCKSAEDK 306
+ LP Q + FSAT+ + + A+ ++ P + + + + N++Q+ + + + K
Sbjct: 204 MQMLPKQRQTLLFSATFSAPIRKLAQDFMNAPETVEVAAQNTTNANVEQHIIAVDTIQ-K 262
Query: 307 YRAICNIYGVITIGQAIIFCHTRKTASWLSEKMSKDGHSVAVLSGELTVEQRIAVLDRFR 366
+ + + + Q I+FC T+++ ++ ++ + S + G+ + + R+ L+ F+
Sbjct: 263 RNLLERLIVDLHMNQVIVFCKTKQSVDRVTRELVRRNLSAQAIHGDRSQQSRLETLNAFK 322
Query: 367 VGLEKVLITTNVLSRGIDVEQVTLVVNFDMPMDMNRKADCETYLHRIGRTGRFGKAGIAI 426
G +VL+ T++ +RG+D+ ++ V+N++MP A E Y+HRIGRTGR G G+AI
Sbjct: 323 DGSLRVLVATDIAARGLDIAELPFVINYEMP------AQPEDYVHRIGRTGRAGADGVAI 376
Query: 427 NLIDSPQAMEICTDIEAHFGKKIQLLDIEDAE 458
+L+D + ++ I+ G K+ + IE E
Sbjct: 377 SLMDESE-QKMFESIKELTGNKLLIERIEGFE 407
>UniRef50_Q58083 Cluster: Probable ATP-dependent RNA helicase
MJ0669; n=11; cellular organisms|Rep: Probable
ATP-dependent RNA helicase MJ0669 - Methanococcus
jannaschii
Length = 367
Score = 168 bits (409), Expect = 2e-40
Identities = 109/353 (30%), Positives = 189/353 (53%), Gaps = 19/353 (5%)
Query: 80 FEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMIAQSQSGTGKTAAFVLAML 139
F L+L N+L + GF P+ IQ +P L D N++AQ+++G+GKTA+F + ++
Sbjct: 8 FNELNLSDNILNAIRNKGFEKPTDIQMKVIPLFLNDE-YNIVAQARTGSGKTASFAIPLI 66
Query: 140 SRVDSNKNYPQVLCLSPTYELAIQTGEVAAKMAKFCPEIKLKYAVRGEEL-PRGSKITD- 197
V+ N N + + L+PT ELAIQ + + K +K+ G+ + P+ + +
Sbjct: 67 ELVNEN-NGIEAIILTPTRELAIQVADEIESL-KGNKNLKIAKIYGGKAIYPQIKALKNA 124
Query: 198 HILIGTPGKMFDWGVKFGMFDMGKIKVFVLDEADVMINRQGHQDQCIRIHKCLPSTCQMM 257
+I++GTPG++ D + G ++ +K F+LDEAD M+N G +I +++
Sbjct: 125 NIVVGTPGRILDH-INRGTLNLKNVKYFILDEADEMLN-MGFIKDVEKILNACNKDKRIL 182
Query: 258 FFSATYGTAVMQFAEIIVSNPIIIRLLREEESLDNIKQYYVKCKSAEDKYRAICNIYGVI 317
FSAT ++ A+ + + I+ NI+Q YV+ E ++ A+C +
Sbjct: 183 LFSATMPREILNLAKKYMGDYSFIKAKINA----NIEQSYVEVNENE-RFEALCRLLKNK 237
Query: 318 TIGQAIIFCHTRKTASWLSEKMSKDGHSVAVLSGELTVEQRIAVLDRFRVGLEKVLITTN 377
++FC T++ L+ + G + G+L+ QR V+ F+ ++LI T+
Sbjct: 238 EF-YGLVFCKTKRDTKELASMLRDIGFKAGAIHGDLSQSQREKVIRLFKQKKIRILIATD 296
Query: 378 VLSRGIDVEQVTLVVNFDMPMDMNRKADCETYLHRIGRTGRFGKAGIAINLID 430
V+SRGIDV + V+N+ +P + E+Y+HRIGRTGR GK G AI++I+
Sbjct: 297 VMSRGIDVNDLNCVINYHLPQNP------ESYMHRIGRTGRAGKKGKAISIIN 343
>UniRef50_Q11UI8 Cluster: DEAD box-related helicase; n=3;
Sphingobacteriales|Rep: DEAD box-related helicase -
Cytophaga hutchinsonii (strain ATCC 33406 / NCIMB 9469)
Length = 437
Score = 168 bits (408), Expect = 3e-40
Identities = 119/382 (31%), Positives = 198/382 (51%), Gaps = 19/382 (4%)
Query: 79 TFEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMIAQSQSGTGKTAAFVLAM 138
TF + LL + +MGFN P+ IQ A+P ++++ +++A +Q+GTGKTAA++L +
Sbjct: 2 TFNDFNFNSGLLDSLSSMGFNKPTPIQTEAIPVIMSN--SDLVACAQTGTGKTAAYMLPI 59
Query: 139 LSRV-DSNKNYPQVLCLSPTYELAIQTGEVAAKMAKFCPEIKLKYAVRGEELP---RGSK 194
L ++ +SN + L L PT ELAIQ + + F + G+ +
Sbjct: 60 LHKIIESNTDSLDTLVLVPTRELAIQIDQQIEGFSYFINVSSIAVYGGGDGATWDQQRKA 119
Query: 195 ITD--HILIGTPGKMFDWGVKFGMFDMGKIKVFVLDEADVMINRQGHQDQCIRIHKCLPS 252
+TD +I+I TPG++ ++ G ++ +IK VLDEAD M++ G D +R+ LP+
Sbjct: 120 LTDGANIVIATPGRLLAQ-LQSGTANLKQIKHLVLDEADRMLD-MGFYDDIVRVISYLPT 177
Query: 253 TCQMMFFSATYGTAVMQFAEIIVSNPIIIRLLREEESLDNIKQYYVKCKSAEDKYRAICN 312
Q + FSAT T + A ++ +P I + + + ++Q Y+ + E K + I +
Sbjct: 178 ERQTIMFSATMPTKMRALANKLMKDPQQINIAISKPAEGILQQAYLVYE--EQKNKLIKH 235
Query: 313 IYGVITIGQAIIFCHTRKTASWLSEKMSKDGHSVAVLSGELTVEQRIAVLDRFRVGLEKV 372
I IIF T++ L +S G S+ +L E+R ++ F+ ++
Sbjct: 236 ILSSGNFNSIIIFSSTKEHVKKLERDLSNMGFSLKGFHSDLEQEEREEIMRAFKSRQLQM 295
Query: 373 LITTNVLSRGIDVEQVTLVVNFDMPMDMNRKADCETYLHRIGRTGRFGKAGIAINLIDSP 432
LI T++LSRGID++ + LV+N ++P D E Y+HRIGRT R G AI I
Sbjct: 296 LIGTDILSRGIDIDGIDLVINAEVP------GDAENYIHRIGRTARAATTGTAITFISDT 349
Query: 433 QAMEICTDIEAHFGKKIQLLDI 454
+ IE G++I+ L I
Sbjct: 350 DQYKF-LQIENLIGREIEKLKI 370
>UniRef50_A4SWL3 Cluster: DEAD/DEAH box helicase domain protein;
n=3; Proteobacteria|Rep: DEAD/DEAH box helicase domain
protein - Polynucleobacter sp. QLW-P1DMWA-1
Length = 500
Score = 168 bits (408), Expect = 3e-40
Identities = 116/382 (30%), Positives = 195/382 (51%), Gaps = 28/382 (7%)
Query: 62 DIEIQRKDPNSPLYSVKTFEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMI 121
+ +I+ KD S + F+ L +LLK V +GF + +Q +P LA +++
Sbjct: 6 ETKIESKDSKS---TGTEFQNFALAASLLKNVAELGFTQATSVQAQVIPAALAGG--DLL 60
Query: 122 AQSQSGTGKTAAFVLAMLSR-VDSNKN--------YPQVLCLSPTYELAIQTGEVAAKMA 172
SQ+G+GKTAAF+L ++++ ++ N N P+VL L PT ELA Q A +
Sbjct: 61 VSSQTGSGKTAAFLLPLINQLIEDNPNNSPVPGRAQPKVLVLCPTRELAQQVAADAVNLV 120
Query: 173 KFCPEIKLKYAVRGEELPRGSKITDH----ILIGTPGKMFDWGVKFGMFDMGKIKVFVLD 228
+ I++ + G +P G +I +++ TPG++ D + +K V+D
Sbjct: 121 RGMKGIRIATVMGG--MPYGKQIQALKGALLVVATPGRLLDL-CDSKAIRLDDVKQLVID 177
Query: 229 EADVMINRQGHQDQCIRIHKCLPSTCQMMFFSATYGTAVMQFAEIIVSNPIIIRLLREEE 288
EAD M++ G D I K Q + FSAT+ +M A + ++ I L E
Sbjct: 178 EADRMLD-MGFADDLEAIDKRCAGRNQTLMFSATFAPKIMSLANELTTDAKRIELAHAGE 236
Query: 289 SLDNIKQYYVKCKSAEDKYRAICNIYGVITIGQAIIFCHTRKTASWLSEKMSKDGHSVAV 348
NI+Q S K++ + +I T+ QA++F T+ + +++ + +G+ +
Sbjct: 237 KHANIEQKLHWADSMSHKHKLLEHILADATLDQAVVFASTQVESEKIADTLRANGYEASA 296
Query: 349 LSGELTVEQRIAVLDRFRVGLEKVLITTNVLSRGIDVEQVTLVVNFDMPMDMNRKADCET 408
L G + R+ L+ R G K+L+ T+V +RGIDV +++ V+NF +PM E
Sbjct: 297 LHGAMPQAVRMRRLESLRKGHTKILVATDVAARGIDVPRISHVINFGLPMKP------ED 350
Query: 409 YLHRIGRTGRFGKAGIAINLID 430
Y HRIGRTGR G+ G+AI L++
Sbjct: 351 YTHRIGRTGRAGRNGVAITLVE 372
>UniRef50_Q9S531 Cluster: DEAD-box protein; n=4;
Cystobacterineae|Rep: DEAD-box protein - Myxococcus
xanthus
Length = 808
Score = 167 bits (407), Expect = 4e-40
Identities = 110/387 (28%), Positives = 196/387 (50%), Gaps = 15/387 (3%)
Query: 80 FEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMIAQSQSGTGKTAAFVLAML 139
F+ ++L + + G+ P+ +Q A + +++I +S++GTGKTAAF L +L
Sbjct: 31 FDDMNLSEPIRLALAERGYTNPTPVQARAFRPAIEG--KDLIVRSKTGTGKTAAFGLPLL 88
Query: 140 SRVDSNKNYPQVLCLSPTYELAIQTGEVAAKMAKFCPEIKLKYAVRGEELPRGSKITDH- 198
++ +++ + L L PT ELA+Q + +AK +K+ G + + +
Sbjct: 89 EKIPADERRVRALILCPTRELALQVADELKMLAKH-KGLKIAAIYGGASMKQQEDALEEG 147
Query: 199 --ILIGTPGKMFDWGVKFGMFDMGKIKVFVLDEADVMINRQGHQDQCIRIHKCLPSTCQM 256
I++GTPG++FD + G + VLDEAD M+N QG ++ RI LP T Q+
Sbjct: 148 TPIIVGTPGRVFDH-INRGNLKLDACDHAVLDEADEMLN-QGFYEEVTRILDRLPKTRQV 205
Query: 257 MFFSATYGTAVMQFAEIIVSNPIIIRLLREEESLDNIKQYYVKCKSAEDKYRAICNIYGV 316
+ FSAT T + +N + L + ++++I A K R + +
Sbjct: 206 LLFSATVPTDIQNLIARYTTNAETLLLSGDVFTVEHIHHIRYDVSDAFPKPRNLIYVLEK 265
Query: 317 ITIGQAIIFCHTRKTASWLSEKMSKDGHSVAVLSGELTVEQRIAVLDRFRVGLEKVLITT 376
AIIFC+TR + ++ ++++G +L+G+L ++R V+ + + G ++ T
Sbjct: 266 EEPQNAIIFCNTRDDTALVTAVLNRNGFDAELLNGDLPQKERERVMGKVKRGEVAFMVAT 325
Query: 377 NVLSRGIDVEQVTLVVNFDMPMDMNRKADCETYLHRIGRTGRFGKAGIAINLIDSPQAME 436
++ +RGID+ + V+N+ +P D YLHR+GRTGR G G AINL S + +
Sbjct: 326 DIAARGIDISGLEYVINYSLP------EDPAVYLHRVGRTGRIGNKGTAINLF-SGRELA 378
Query: 437 ICTDIEAHFGKKIQLLDIEDAEEIEKI 463
T +E +G K ++ EE ++
Sbjct: 379 TYTSLEKKYGIKFDKREMPAPEEAMRL 405
>UniRef50_A6PQ62 Cluster: DEAD/DEAH box helicase domain protein;
n=1; Victivallis vadensis ATCC BAA-548|Rep: DEAD/DEAH
box helicase domain protein - Victivallis vadensis ATCC
BAA-548
Length = 542
Score = 167 bits (407), Expect = 4e-40
Identities = 117/360 (32%), Positives = 194/360 (53%), Gaps = 21/360 (5%)
Query: 80 FEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMIAQSQSGTGKTAAFVLAML 139
F L L ++ G+ GF + IQ LP LL +++ ++Q+GTGKTAAF+LA+
Sbjct: 127 FLDLPLHEDVQFGIQHAGFEYCTPIQALTLPALLEG--RDLAGKAQTGTGKTAAFLLAVF 184
Query: 140 SRV------DSNKNYPQVLCLSPTYELAIQTGEVAAKMAKFC--PEIKLKYAVRGEELPR 191
+R+ + P+ L L+PT ELA+Q + A + F + + + E+ R
Sbjct: 185 TRLLNHPLEERKPGCPRALVLAPTRELAMQIQKDAEVLEIFTGLTSVVVFGGMDHEKQRR 244
Query: 192 GSKITDHILIGTPGKMFDWGVKFGMFDMGKIKVFVLDEADVMINRQGHQDQCIRIHKCLP 251
+ ++IGTPG++ D+ + G + K++V V+DEAD M++ G RI LP
Sbjct: 245 SLEQPVDLVIGTPGRIIDYS-RGGSLKLSKVEVLVIDEADRMLD-MGFIPDVKRIVSQLP 302
Query: 252 --STCQMMFFSATYGTAVMQFAEIIVSNPIIIRLLREEESLDNIKQYYVKCKSAEDKYRA 309
Q + FSAT +++ A ++ P+I+ E+ +NI+Q + ++K
Sbjct: 303 RKGERQTLLFSATLEDHILRLASGWLAEPVIVESEPEKMVSENIEQTFYSVLR-DEKLAL 361
Query: 310 ICNIYGVITIGQAIIFCHTRKTASWLSEKMSKDGHSVAVLSGELTVEQRIAVLDRFRVGL 369
+ I + +IF + + L +++ G+ V VLSG++ E+RI VL+RFR G
Sbjct: 362 LLYILRTEPYDRVLIFGNRKDVNLRLQYDLARFGYEVPVLSGDIPQEKRIKVLERFRAGT 421
Query: 370 EKVLITTNVLSRGIDVEQVTLVVNFDMPMDMNRKADCETYLHRIGRTGRFGKAGIAINLI 429
EK++I T+V +RGI V+ V+LV+N+D+P E Y+HRIGRTGR G G +I+ +
Sbjct: 422 EKIVIATDVAARGIHVDDVSLVINYDLP------ERAEDYVHRIGRTGRAGHNGKSISFL 475
>UniRef50_UPI0001509D93 Cluster: DEAD/DEAH box helicase family
protein; n=1; Tetrahymena thermophila SB210|Rep:
DEAD/DEAH box helicase family protein - Tetrahymena
thermophila SB210
Length = 476
Score = 167 bits (406), Expect = 5e-40
Identities = 109/387 (28%), Positives = 195/387 (50%), Gaps = 14/387 (3%)
Query: 79 TFEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMIAQSQSGTGKTAAFVLAM 138
+F LK +LL+ V GF PS++Q +P + ++++ Q+++GTGKTA FVL++
Sbjct: 39 SFNDFSLKQDLLRSVKEAGFERPSEVQHQCIPNAIHG--KDVLCQAKAGTGKTAVFVLSV 96
Query: 139 LSRVDSNKNYPQVLCLSPTYELAIQTGEVAAKMAKFCP-EIKLKYAVRGEELPRGSKITD 197
L+++ + L L T ELA Q ++ KF ++K Y E + + T
Sbjct: 97 LNQLPDDAKPFSCLVLCHTRELAFQIKNEFKRLGKFTNFKVKAVYGGVEESVDIHTLKTK 156
Query: 198 --HILIGTPGKMFDW-GVKFGMFDMGKIKVFVLDEADVMINRQGHQDQCIRIHKCLPSTC 254
HIL+ TPG+ K + + I+ F++DE D +++ + I LP
Sbjct: 157 KPHILVATPGRCLSLIKAKPSVIETQNIEYFIIDECDRVLSSNKMRSDVQNIFYELPRKK 216
Query: 255 QMMFFSATYGTAVMQFAEIIVSNPIIIRLLREEES-LDNIKQYYVKCKSAEDKYRAICNI 313
Q+M FS T + + + I I + + L ++QY++K + + K + +
Sbjct: 217 QVMMFSGTMSDESKKTCRKFLQDQIEIFVEDNSKLVLHGLEQYHIKIEEKQ-KISVLRQL 275
Query: 314 YGVITIGQAIIFCHTRKTASWLSEKMSKDGHSVAVLSGELTVEQRIAVLDRFRVGLEKVL 373
Q IIF + + A +LS+ ++ GH A + L +R + F+ G +VL
Sbjct: 276 LDQGNYNQVIIFVNKQDRAKYLSKYLTDKGHDNAFIYRNLDQSERTKIYSEFKEGKNRVL 335
Query: 374 ITTNVLSRGIDVEQVTLVVNFDMPMDMNRKADCETYLHRIGRTGRFGKAGIAINLIDSPQ 433
+ T+++ RGID+E+V LV+NFDMP E Y+HR+GR GRF G AI+ I + +
Sbjct: 336 VATDLVGRGIDIERVNLVINFDMPQ------ITEDYMHRVGRAGRFETKGQAISFISTKE 389
Query: 434 AMEICTDIEAHFGKKIQLLDIEDAEEI 460
++ +I++ F +I+ +++ ++
Sbjct: 390 DEKVLAEIQSTFSTQIKEYNLKQESQL 416
>UniRef50_A3QMD4 Cluster: Putative uncharacterized protein mel-46;
n=2; Caenorhabditis elegans|Rep: Putative
uncharacterized protein mel-46 - Caenorhabditis elegans
Length = 973
Score = 167 bits (406), Expect = 5e-40
Identities = 118/401 (29%), Positives = 200/401 (49%), Gaps = 17/401 (4%)
Query: 63 IEIQRKDPNSPLYSVKTFEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMIA 122
IE+ + + + S TFE+L + L+ + F+ PS +Q A+P L ++M+
Sbjct: 7 IEVLDRGSSIDVQSNCTFESLMIGQKTLERLKNSQFDRPSPVQARAIPVGLLG--RDMLV 64
Query: 123 QSQSGTGKTAAFVLAMLSRVDSNKNYPQVLCLSPTYELAIQTGEVAAKMAKFCPEIKLKY 182
Q++SGTGKT F + + +DS ++ Q + ++PT E+++Q E K+A +
Sbjct: 65 QAKSGTGKTLVFSVLAVENLDSRSSHIQKVIVTPTREISVQIKETVRKVAPTGARTSVYV 124
Query: 183 AVRGEELPRGS--KITDHILIGTPGKMFDWGVKFGMFDMGKIKVFVLDEADVMINRQGHQ 240
+L + I+IGTPG++ VK G +M + FVLDEAD +++
Sbjct: 125 GGSAHKLNLIDLKQTRPQIVIGTPGRIAQL-VKLGAMNMSHVDFFVLDEADKLMDEVFRD 183
Query: 241 DQCIRIHKCLPSTCQMMFFSATYGTAVMQFAEIIVSNPIIIRLLREEESLDNIKQYYV-K 299
D I I+ LP Q+ FSATY + + + ++R ++ L IKQY V K
Sbjct: 184 DINIIINS-LPQIRQVAVFSATYPRNLDNLLSTFLRDAALVRFNADDVQLFGIKQYVVAK 242
Query: 300 CKSAEDKYRAICNIYGVITIGQAIIFCHTRKTASWLSEKMSKDGHSVAVLSGELTVEQRI 359
C +K + ++ I QA++FC ++ + G V +S ++ + R
Sbjct: 243 CSPMLEK---LTHVLKSIRYVQALVFCDQISKCEPIATHLKSSGLDVTFVSSAMSQKDRQ 299
Query: 360 AVLDRFRVGLEKVLITTNVLSRGIDVEQVTLVVNFDMPMDMNRKADCETYLHRIGRTGRF 419
+D+ R K+L+++++ +RGID + V LVVN D A+ ETY HRIGR RF
Sbjct: 300 LAVDQLRAKRVKILVSSDLTARGIDADNVNLVVNID------AAANEETYFHRIGRAARF 353
Query: 420 GKAGIAINLIDSPQAMEICTDIEAHFGKKIQLLDIEDAEEI 460
G G A+ L++ +A++ T + A+ GK +E E+
Sbjct: 354 GAHGAAVTLLEDERALKGFTAL-AYRGKVTVKRVVEGVHEL 393
>UniRef50_P54475 Cluster: Probable ATP-dependent RNA helicase yqfR;
n=12; Bacillaceae|Rep: Probable ATP-dependent RNA
helicase yqfR - Bacillus subtilis
Length = 438
Score = 167 bits (406), Expect = 5e-40
Identities = 106/356 (29%), Positives = 194/356 (54%), Gaps = 16/356 (4%)
Query: 80 FEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMIAQSQSGTGKTAAFVLAML 139
FE LKP ++ V+ +GF P+ IQ+ +P +L +++I QSQ+GTGKT A++L +L
Sbjct: 6 FELYELKPFIIDAVHRLGFYEPTDIQKRLIPAVLKK--ESVIGQSQTGTGKTHAYLLPLL 63
Query: 140 SRVDSNKNYPQVLCLSPTYELAIQTGEVAAKMAKF--CPEIKLKYAVRGEELPRGS---K 194
+++D K+ QV+ +PT ELA Q + A K+ + +I+ K + G + + K
Sbjct: 64 NKIDPAKDVVQVVITAPTRELANQIYQEALKITQGEEGSQIRSKCFIGGTDKQKSIDKLK 123
Query: 195 ITDHILIGTPGKMFDWGVKFGMFDMGKIKVFVLDEADVMINRQGHQDQCIRIHKCLPSTC 254
I H+++GTPG++ D +K + K + V+DEAD+M++ G I +P
Sbjct: 124 IQPHLVVGTPGRIADL-IKEQALSVHKAESLVIDEADLMLD-MGFLADVDYIGSRMPEDL 181
Query: 255 QMMFFSATYGTAVMQFAEIIVSNPIIIRLLREEESLDNIKQYYVKCKSAEDKYRAICNIY 314
QM+ FSAT + F + + NP + ++ + I+ + K DK + + +I
Sbjct: 182 QMLVFSATIPEKLKPFLKKYMENPKYAHVEPKQVTAAKIEHILIPSKH-RDKDKLLFDIM 240
Query: 315 GVITIGQAIIFCHTRKTASWLSEKMSKDGHSVAVLSGELTVEQRIAVLDRFRVGLEKVLI 374
+ I+F +T+ TA +++ ++ G + +L G LT +R V+ + +I
Sbjct: 241 SHLNPYLGIVFANTKNTADHIAQYLTGKGMKIGLLHGGLTPRERKKVMKQINDLEFTYII 300
Query: 375 TTNVLSRGIDVEQVTLVVNFDMPMDMNRKADCETYLHRIGRTGRFGKAGIAINLID 430
T++ +RGID++ V+ V+N+++P D+ + Y+HR+GRT R G +G A+ + +
Sbjct: 301 ATDLAARGIDIKGVSHVINYELPDDL------DFYVHRVGRTARAGSSGQAMTIYE 350
>UniRef50_Q2BMZ1 Cluster: ATP-dependent RNA helicase; n=1;
Neptuniibacter caesariensis|Rep: ATP-dependent RNA
helicase - Neptuniibacter caesariensis
Length = 417
Score = 167 bits (405), Expect = 7e-40
Identities = 110/361 (30%), Positives = 194/361 (53%), Gaps = 21/361 (5%)
Query: 79 TFEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMIAQSQSGTGKTAAFVLAM 138
+F +L L + ++G+ P+ IQ+ A+P +L ++IA +++G+GKTA FVL +
Sbjct: 2 SFVSLGLSDFFTSTLSSLGYKEPTAIQDKAIPAVLKG--HDLIAAAETGSGKTAGFVLPL 59
Query: 139 LSRVDS----NKNYPQVLCLSPTYELAIQTGEVAAKMAKFCPEIKLKYAVRG-----EEL 189
L ++ S N L L PT ELA+Q + + ++ CP A+ G ++
Sbjct: 60 LEKLHSIPAPGNNLTHALVLVPTRELAVQVSQSVDRYSENCPRKIRSVAIYGGAAINPQM 119
Query: 190 PRGSKITDHILIGTPGKMFDWGVKFGMFDMGKIKVFVLDEADVMINRQGHQDQCIRIHKC 249
SK D I++ TPG++ D ++ D+ +K VLDEAD M++ G D+ I
Sbjct: 120 QSLSKGCD-IVVATPGRLLDL-MRKNALDLRGLKALVLDEADRMLDL-GFADELDDILDQ 176
Query: 250 LPSTCQMMFFSATYGTAVMQFAEIIVSNPIIIRLLREEESLDNIKQYYVKCKSAEDKYRA 309
P Q + FSAT+ V + E ++ NP+ I + +E D + Q ++ ++
Sbjct: 177 TPGNVQTLLFSATFPDKVKELTEELLRNPVEISVKQEATLPDQLHQRAIEV-DRNNRTML 235
Query: 310 ICNIYGVITIGQAIIFCHTRKTASWLSEKMSKDGHSVAVLSGELTVEQRIAVLDRFRVGL 369
+ ++ Q +IF +++TA+ + K+ + G + L G+LT ++R+ L+ F G
Sbjct: 236 LKHLIKQEKWQQLLIFVGSKRTANNIELKLYRSGIQSSTLHGDLTQKERLGALEDFSKGR 295
Query: 370 EKVLITTNVLSRGIDVEQVTLVVNFDMPMDMNRKADCETYLHRIGRTGRFGKAGIAINLI 429
K+LI T++ +RGID+ + V+N+D+P +A + Y+HR GRT R G+AG+AI+ +
Sbjct: 296 CKILIATDLAARGIDIPSLPCVLNYDLP-----RATSD-YVHRAGRTARAGEAGLAISFV 349
Query: 430 D 430
D
Sbjct: 350 D 350
>UniRef50_A6VX62 Cluster: DEAD/DEAH box helicase domain protein;
n=1; Marinomonas sp. MWYL1|Rep: DEAD/DEAH box helicase
domain protein - Marinomonas sp. MWYL1
Length = 452
Score = 167 bits (405), Expect = 7e-40
Identities = 125/384 (32%), Positives = 202/384 (52%), Gaps = 26/384 (6%)
Query: 80 FEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMIAQSQSGTGKTAAFVLAML 139
F L+L ++K + MGF S+IQ LP L ++I Q+Q+GTGKTAAF++AM+
Sbjct: 73 FHDLNLPDRVIKSIAEMGFEYCSEIQAETLPMTLLG--YDIIGQAQTGTGKTAAFLIAMI 130
Query: 140 SR-----VDSNK--NYPQVLCLSPTYELAIQTGEVAAKMAKFCPEIKLKYAVRG--EELP 190
S ++ + N+ + L ++PT ELAIQ + A K+ C + + V G E
Sbjct: 131 SDFLDYPLEEKRANNFARGLIIAPTRELAIQIADEAVKLTSNC-HLNVVTLVGGLSYEKQ 189
Query: 191 RGSKITDH--ILIGTPGKMFDWGVKFGMFDMGKIKVFVLDEADVMINRQGHQDQCIRIHK 248
+ + T++ IL+ TPG++ D+ + +GK++ VLDEAD M++ G I +
Sbjct: 190 KIALETENVDILVATPGRLLDFA-RSRKVQLGKVECLVLDEADRMLS-MGFIPDVKSIIR 247
Query: 249 CLP--STCQMMFFSATYGTAVMQFAEIIVSNPIIIRLLREEESLDNIKQYYVKCKSAEDK 306
P T Q M FSAT+ + A+ P + ++ +E + NI Q + A+ K
Sbjct: 248 MTPHKETRQTMLFSATFPKDIQALAQQWTYFPKEVSVVPKEATNQNIDQV-IYTVEADQK 306
Query: 307 YRAICNIYGVITIGQAIIFCHTRKTASWLSEKMSKDGHSVAVLSGELTVEQRIAVLDRFR 366
+ + + + IIF + R L E++ K + A+LSGE+ ++R+ L F+
Sbjct: 307 WPVLQQLIEKNGGQRTIIFANRRDETRDLYERLRKANINCAILSGEVAQDKRVKTLANFK 366
Query: 367 VGLEKVLITTNVLSRGIDVEQVTLVVNFDMPMDMNRKADCETYLHRIGRTGRFGKAGIAI 426
G+ +VL+ T+V RGI V+ V LVVN+ +P D E Y+HRIGRTGR G+ G ++
Sbjct: 367 EGIIQVLVATDVAGRGIHVDNVELVVNYSLP------EDPEDYVHRIGRTGRGGETGKSV 420
Query: 427 NLIDSPQAMEICTDIEAHFGKKIQ 450
+ A I +IE G+ I+
Sbjct: 421 SFASEDDAFMI-PEIERVVGESIR 443
>UniRef50_Q8D7D0 Cluster: Superfamily II DNA and RNA helicase; n=20;
Gammaproteobacteria|Rep: Superfamily II DNA and RNA
helicase - Vibrio vulnificus
Length = 418
Score = 166 bits (404), Expect = 9e-40
Identities = 120/363 (33%), Positives = 194/363 (53%), Gaps = 27/363 (7%)
Query: 79 TFEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMIAQSQSGTGKTAAFVLAM 138
TF L L +L + +GFN P+ IQ+ A+P LL ++++A +Q+GTGKTAA+ L +
Sbjct: 4 TFIELGLDSSLSDHLSQLGFNTPTPIQQQAIPHLLQG--RDVLAAAQTGTGKTAAYGLPL 61
Query: 139 L------SRVDSNKNYPQVLCLSPTYELAIQTGEVAAKMAKFCP-EIKLKYA-----VRG 186
+ SR ++ +P+ L L+PT ELA Q + + A+ I Y V+
Sbjct: 62 IQMLSRQSREETAPKHPRALILAPTRELAQQVFDNLKQYAQHTELAIVTVYGGTSIRVQQ 121
Query: 187 EELPRGSKITDHILIGTPGKMFDWGVKFGMFDMGKIKVFVLDEADVMINRQGHQDQCIRI 246
E+L +G I LI TPG++ D + + ++++ VLDEAD M++ G RI
Sbjct: 122 EQLAKGVDI----LIATPGRLLDH-LFTKKTSLNQLQMLVLDEADRMLD-MGFLPDIQRI 175
Query: 247 HKCLPSTCQMMFFSATYGTAVMQFAEIIVSNPIIIRLLREEESLDNIKQYYVKCKSAEDK 306
K +P Q + FSAT+ T V A ++ P+ +++ + D +KQ V + K
Sbjct: 176 MKRMPEERQTLLFSATFETRVKALAYRLMKEPVEVQVAAANSTADTVKQM-VYPVDKKRK 234
Query: 307 YRAICNIYGVITIGQAIIFCHTRKTASWLSEKMSKDGHSVAVLSGELTVEQRIAVLDRFR 366
+ + G Q ++F T++ + L ++ DG A ++G+ + R LD F+
Sbjct: 235 SELLAYLIGSRNWQQVLVFTKTKQGSDALVSELKLDGIKAASINGDKSQGARQKALDDFK 294
Query: 367 VGLEKVLITTNVLSRGIDVEQVTLVVNFDMPMDMNRKADCETYLHRIGRTGRFGKAGIAI 426
G + LI T+V +RG+D+ Q+ VVNFDMP KA E Y+HRIGRTGR G+ G+A+
Sbjct: 295 SGKVRALIATDVAARGLDIAQLEQVVNFDMPY----KA--EDYVHRIGRTGRAGQTGLAV 348
Query: 427 NLI 429
+ +
Sbjct: 349 SFM 351
>UniRef50_Q28T45 Cluster: DEAD/DEAH box helicase-like protein; n=18;
Alphaproteobacteria|Rep: DEAD/DEAH box helicase-like
protein - Jannaschia sp. (strain CCS1)
Length = 644
Score = 166 bits (404), Expect = 9e-40
Identities = 120/374 (32%), Positives = 186/374 (49%), Gaps = 27/374 (7%)
Query: 70 PNSPLYSVKTFEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMIAQSQSGTG 129
P + TF L L P + K + G+ +P+ IQ A+P LA ++++ +Q+GTG
Sbjct: 3 PRQDWTPMTTFADLDLNPKVQKAIVEAGYESPTPIQAGAIPPALAG--RDVLGIAQTGTG 60
Query: 130 KTAAFVL---AMLSRVDSNKNYPQVLCLSPTYELAIQTGE---VAAKMAKFCPEIKLKYA 183
KTA+F L ML+R + P+ L L PT ELA Q E + AK K + +
Sbjct: 61 KTASFTLPMITMLARGRARARMPRSLVLCPTRELAAQVAENFDIYAKHVKLTKALLIGGV 120
Query: 184 VRGEELPRGSKITDHILIGTPGKMFDWGVKFGMFDMGKIKVFVLDEADVMINRQGHQDQC 243
E+ K D +LI TPG++ D + G + +KV V+DEAD M++ G
Sbjct: 121 SFKEQEQAIDKGVD-VLIATPGRLLDHFER-GKLILNDVKVMVVDEADRMLD-MGFIPDI 177
Query: 244 IRIHKCLPSTCQMMFFSATYGTAVMQFAEIIVSNPIIIRLLREEESLDNIKQYYVKCKSA 303
RI +P T Q +FFSAT + + +SNP I + R+ + I+Q ++ K+
Sbjct: 178 ERIFGLVPFTRQTLFFSATMAPEIERITNTFLSNPEKIEVERQSTTSATIEQRLIEFKAP 237
Query: 304 E---------DKYRAICNIYGVITIGQAIIFCHTRKTASWLSEKMSKDGHSVAVLSGELT 354
D RA G AIIFC+ + +++ + K + + G+L
Sbjct: 238 RRDAQAKMKRDMLRAAITAEGD-AFRNAIIFCNRKVDVDIVAKSLKKHNLNAEPIHGDLD 296
Query: 355 VEQRIAVLDRFRVGLEKVLITTNVLSRGIDVEQVTLVVNFDMPMDMNRKADCETYLHRIG 414
R+ L FR G +L+ ++V +RG+D+ V+ V+N+D+P + E Y+HRIG
Sbjct: 297 QSHRMRTLAGFRDGSITLLVASDVAARGLDIPNVSHVINYDVP------SHAEDYVHRIG 350
Query: 415 RTGRFGKAGIAINL 428
RTGR GK G+AI L
Sbjct: 351 RTGRAGKTGVAITL 364
>UniRef50_A2E773 Cluster: Helicase conserved C-terminal domain
containing protein; n=3; Trichomonas vaginalis G3|Rep:
Helicase conserved C-terminal domain containing protein
- Trichomonas vaginalis G3
Length = 418
Score = 166 bits (403), Expect = 1e-39
Identities = 121/406 (29%), Positives = 207/406 (50%), Gaps = 21/406 (5%)
Query: 62 DIEIQRKDPNSPLYSVKTFEALH---LKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQ 118
D+++ + D SP + + +E L +L + + F PS IQ +++ +
Sbjct: 20 DLKVIQSDKTSPYSAPQDWEDLFDYDTYSDLHQKLIDNNFEKPSSIQASSIQIANGEDHP 79
Query: 119 NMIAQSQSGTGKTAAFVLAMLSRVDSNKNYPQVLCLSPTYELAIQTGEVAAKMAKFCPEI 178
+++ Q+Q+G+GKT AFV+ L RVD N + QV+ L P EL QT E K+A PE
Sbjct: 80 SILGQAQNGSGKTLAFVVNSLLRVDRNSSKVQVVILVPNMELVDQTEEYFQKLA---PE- 135
Query: 179 KLKYAVRGEELPRGSKITDH---ILIGTPGKMFDWGVKFGMFDMGKIKVFVLDEADVMIN 235
V ++ + DH I++ +PG F+ + + I VFV+DE D +I
Sbjct: 136 ----GVTYTKIDKNGADIDHLGQIVVTSPGLFFN--AANAIPQLKDIDVFVVDECDEVIT 189
Query: 236 RQGHQDQCIRIHKCLPSTCQMMFFSATYGTAVMQFAEIIVSNPIIIRLLREEESLDNI-- 293
+ + + I+ + + Q + +SAT + F I P + R++ ++++ N
Sbjct: 190 NKIYHEDLIKYAGEIKNA-QFLLYSATLVDKLNDF--INTFRPNMQRIILPQKNVINRTN 246
Query: 294 KQYYVKCKSAEDKYRAICNIYGVITIGQAIIFCHTRKTASWLSEKMSKDGHSVAVLSGEL 353
K +++ C+ DK AI ++ + Q IF +TRK + +++ SG+
Sbjct: 247 KHFFIDCRKGMDKIDAINIMFQYLFQFQTFIFFNTRKYLQKVQKQLEALKLECDWCSGDR 306
Query: 354 TVEQRIAVLDRFRVGLEKVLITTNVLSRGIDVEQVTLVVNFDMPMDMNRKADCETYLHRI 413
T ++R V+ +FR KVL+TTN+L+RGID+ +V+NFDMP + D E+YLHR
Sbjct: 307 TKDERRDVVKKFREQKIKVLLTTNLLARGIDIPSCKVVINFDMPRKERGEPDYESYLHRQ 366
Query: 414 GRTGRFGKAGIAINLIDSPQAMEICTDIEAHFGKKIQLLDIEDAEE 459
GR GRFGK G NLI + M++ I+ + +I + +D ++
Sbjct: 367 GRCGRFGKEGKVFNLIRDDEDMKMIEYIKKTYSVEITQITPQDVQK 412
>UniRef50_UPI00015B4D43 Cluster: PREDICTED: hypothetical protein;
n=1; Nasonia vitripennis|Rep: PREDICTED: hypothetical
protein - Nasonia vitripennis
Length = 990
Score = 165 bits (402), Expect = 2e-39
Identities = 112/379 (29%), Positives = 192/379 (50%), Gaps = 20/379 (5%)
Query: 79 TFEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMIAQSQSGTGKTAAFVLAM 138
TF + L +L G+ GF+ PS IQ ++P L ++I +++SGTGKTA F +
Sbjct: 25 TFSQMGLSQQVLNGLLNCGFHKPSPIQHKSIP--LGRCGFDLIVRAKSGTGKTAVFGIIA 82
Query: 139 LSRVDSNKNYPQVLCLSPTYELAIQTGEVAAKMAKFCPEIKLKYAVRGE--ELPRGSKIT 196
L +D + QV+ L+PT E+AIQ EV A + +K++ + G ++ R
Sbjct: 83 LEMIDIKISSVQVIILAPTREIAIQIKEVIASLGCEIKGLKVESFIGGVAMDIDRKKLSN 142
Query: 197 DHILIGTPGKMFDWGVKFGMFDMGKIKVFVLDEADVMINRQGHQDQCIRIHKCLPSTCQM 256
HI IG PG++ + G M +++FVLDEAD ++ + Q I+ LP Q+
Sbjct: 143 CHIAIGAPGRVKHL-IDKGYLKMDHVRLFVLDEADKLME-ESFQKDINYIYAKLPPNRQV 200
Query: 257 MFFSATYGTAVMQFAEIIVSNPIIIRLLREEESLDNIKQYYV-------KCKSAEDKYRA 309
+ SATY + F E + +PI+ + L ++Q+ + + K
Sbjct: 201 ISSSATYPGDLEIFLESYMQSPILSSADNDGPILVGLRQFASIVPQHLNAMRQVQIKVEE 260
Query: 310 ICNIYGVITIGQAIIFCHTRKTASWLSEKMSKDGHSVAVLSGELTVEQRIAVLDRFRVGL 369
+ I+ + Q ++F + + A + K++ G + G + +R+ + + +
Sbjct: 261 LIKIFKKVPFKQCLVFTNYQTRAQSVCNKITSMGFPAIFIVGNQNMNKRLDAMKKLKNFK 320
Query: 370 EKVLITTNVLSRGIDVEQVTLVVNFDMPMDMNRKADCETYLHRIGRTGRFGKAGIAINLI 429
++L+TT++ +RGID E V LV+N D+P +D TYLHRIGR GR+G GIAIN++
Sbjct: 321 CRILLTTDLTARGIDAENVNLVINLDIP------SDSATYLHRIGRAGRYGSRGIAINIV 374
Query: 430 DSPQAMEICTDIEAHFGKK 448
+ + + + D+ G K
Sbjct: 375 -AEKELNMFQDLLQSIGGK 392
>UniRef50_Q82T78 Cluster: RhlE; ATP-dependent RNA helicase RhlE;
n=3; Nitrosomonadaceae|Rep: RhlE; ATP-dependent RNA
helicase RhlE - Nitrosomonas europaea
Length = 498
Score = 165 bits (402), Expect = 2e-39
Identities = 118/397 (29%), Positives = 207/397 (52%), Gaps = 26/397 (6%)
Query: 79 TFEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMIAQSQSGTGKTAAFVLAM 138
TF L L +L V G+ P+ IQ +P++LA ++++A +Q+GTGKTA F L +
Sbjct: 6 TFAQLGLSSEILHAVNDEGYVNPTPIQAQVIPSILAG--KDVMASAQTGTGKTAGFTLPL 63
Query: 139 LSRVDSNKN-------YP-QVLCLSPTYELAIQTGEVAAKMAKFCPEIKLKYAVRGEEL- 189
L R+ + N +P + L ++PT ELA+Q E K K+ ++ G +
Sbjct: 64 LYRLQAYANTSVSPARHPVRALIMAPTRELAMQIDESVRKYGKYLA-LRTAVVFGGINIE 122
Query: 190 PRGSKITD--HILIGTPGKMFDWGVKFGMFDMGKIKVFVLDEADVMINRQGHQDQCIRIH 247
P+ + + IL+ TPG++ D V+ + K ++ VLDEAD M++ G R+
Sbjct: 123 PQIAALQAGVEILVATPGRLLDL-VEQKAVNFSKTEILVLDEADRMLD-MGFLPDIKRVM 180
Query: 248 KCLPSTCQMMFFSATYGTAVMQFAEIIVSNPIIIRLLREEESLDNIKQYYVKCKSAEDKY 307
L Q + FSAT+ + + A+ ++ P+ I + ++I + + + K+
Sbjct: 181 ALLSPQRQSLMFSATFSGEIRKLADSLLKQPVRIEAAVQNTVNESIS-HVIHWVKPDSKF 239
Query: 308 RAICNIYGVITIGQAIIFCHTRKTASWLSEKMSKDGHSVAVLSGELTVEQRIAVLDRFRV 367
+ ++ + QA+IF T+ AS L++ +S+ S + G+ +QR L F+
Sbjct: 240 ALLLHLIRQQNLKQALIFVKTKHGASHLAQMLSRHEISAVAIHGDRNQQQRTQALAEFKH 299
Query: 368 GLEKVLITTNVLSRGIDVEQVTLVVNFDMPMDMNRKADCETYLHRIGRTGRFGKAGIAIN 427
G ++L+ T+V +RGID+E+++ V+N+++P + E Y+HRIGRTGR G G AI+
Sbjct: 300 GDVQILVATDVAARGIDIEKLSHVINYELP------GNPEDYVHRIGRTGRAGSKGKAIS 353
Query: 428 LIDSPQAMEICTDIEAHFGKKIQLLDIE--DAEEIEK 462
L+ S E+ +IE K++ I DAE+ +
Sbjct: 354 LV-SEHEKELLANIEKLLNAKLETEQIAGFDAEQFAR 389
>UniRef50_Q0RTL3 Cluster: Cold-shock DeaD box ATP-dependent RNA
helicase; n=2; Bacteria|Rep: Cold-shock DeaD box
ATP-dependent RNA helicase - Frankia alni (strain
ACN14a)
Length = 608
Score = 165 bits (402), Expect = 2e-39
Identities = 121/379 (31%), Positives = 197/379 (51%), Gaps = 22/379 (5%)
Query: 73 PLYSVKTFEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMIAQSQSGTGKTA 132
P V F L L+P LL+ + A+G+ P+ IQ A+P L+A ++++ Q+ +GTGKTA
Sbjct: 52 PAEDVAGFAELALRPELLRSLAALGYEEPTPIQREAVPPLVAG--RDLLGQAATGTGKTA 109
Query: 133 AFVLAMLSRVDSNK---NYPQVLCLSPTYELAIQTGEVAAKMAKFCPEIKLKY---AVRG 186
AF L +L R+ ++ + PQ L L PT ELA+Q E + + L A G
Sbjct: 110 AFALPLLHRLTDDRTGDHGPQALVLVPTRELAVQVSEAIHRYGRDLGARVLPVYGGAPIG 169
Query: 187 EELPRGSKITDHILIGTPGKMFDWGVKFGMFDMGKIKVFVLDEADVMINRQGHQDQCIRI 246
++ + D +++ TPG+ D + G + + VLDEAD M++ G + I
Sbjct: 170 RQVRALVQGVD-VVVATPGRALDHMGR-GTLRLDGLHTVVLDEADEMLD-MGFAEDIDAI 226
Query: 247 HKCLPSTCQMMFFSATYGTAVMQFAEIIVSNPIIIRLLR---EEESLDNIKQYYVKCKSA 303
+ P Q + FSAT + Q A + +P+ I++ R E + ++Q A
Sbjct: 227 LEQAPQKRQTVLFSATLPPRMDQIARRHLRDPVRIQIGRAAPEPGAAPLVRQVSYVVPRA 286
Query: 304 EDKYRAICNIYGVITIGQAIIFCHTRKTASWLSEKMSKDGHSVAVLSGELTVEQRIAVLD 363
K A+ I V + AI+FC TR+ L++ ++ G+ L G ++ EQR V++
Sbjct: 287 Y-KTAALGRILDVESPRSAIVFCRTREEVDQLADSLNGRGYRAESLHGGMSQEQRERVME 345
Query: 364 RFRVGLEKVLITTNVLSRGIDVEQVTLVVNFDMPMDMNRKADCETYLHRIGRTGRFGKAG 423
R R +L+ T+V +RG+D EQ+T VVN+ +P + ++Y+HRIGR GR G+ G
Sbjct: 346 RLRTATADLLVATDVAARGLDFEQLTHVVNYSVP------SAPDSYVHRIGRVGRAGREG 399
Query: 424 IAINLIDSPQAMEICTDIE 442
+AI L + P+ + IE
Sbjct: 400 VAITLAE-PREHRMLKTIE 417
>UniRef50_Q0BSI7 Cluster: ATP-dependent RNA helicase; n=12;
Alphaproteobacteria|Rep: ATP-dependent RNA helicase -
Granulobacter bethesdensis (strain ATCC BAA-1260 /
CGDNIH1)
Length = 763
Score = 165 bits (402), Expect = 2e-39
Identities = 118/390 (30%), Positives = 195/390 (50%), Gaps = 23/390 (5%)
Query: 80 FEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMIAQSQSGTGKTAAFVLAML 139
F L L + + + MG+ P+ IQ A+P +L ++++ +Q+GTGKTA+F L M+
Sbjct: 225 FADLGLSEPVQRAITEMGYLHPTPIQAQAIPVVLMG--RDVLGCAQTGTGKTASFTLPMM 282
Query: 140 SRVDSNK---NYPQVLCLSPTYELAIQTGEVAAKMAKFCPEIKLKYA--VRGEELPRGSK 194
+ + P+ L L PT ELA+Q VA K+ +KL +A + GE +
Sbjct: 283 DILSDRRARARMPRSLILEPTRELALQ---VAENFVKYGQYLKLNHALLIGGESMNDQRD 339
Query: 195 ITDH---ILIGTPGKMFDWGVKFGMFDMGKIKVFVLDEADVMINRQGHQDQCIRIHKCLP 251
+ +LI TPG++ D + G+ + ++ V+DEAD M++ G RI LP
Sbjct: 340 VLSKGVDVLIATPGRLIDLFDRGGLL-LTDTRILVIDEADRMLD-MGFIPDVERIVSLLP 397
Query: 252 STCQMMFFSATYGTAVMQFAEIIVSNPIIIRLLREEESLDNIKQYYVKCKSAEDKYRAIC 311
Q +FFSAT + + A+ + NP I + + I + DK +A+
Sbjct: 398 HNRQTLFFSATMAPEIRRLADAFLQNPKEITVAKPASVATTITSG-LALVGEMDKRKALR 456
Query: 312 NIYGVITIGQAIIFCHTRKTASWLSEKMSKDGHSVAVLSGELTVEQRIAVLDRFRVGLEK 371
++ + A+IFC+ ++ L++ + K G + L G+L R + L++F+ G +
Sbjct: 457 HLLRQEKVQNALIFCNRKRDVDILTKSLVKHGFAAGPLHGDLAQSLRFSTLEKFKAGSLQ 516
Query: 372 VLITTNVLSRGIDVEQVTLVVNFDMPMDMNRKADCETYLHRIGRTGRFGKAGIAINLIDS 431
+L+ ++V +RGID+ ++ V NFD+P+ E Y+HRIGRTGR G+ G A L S
Sbjct: 517 LLVCSDVAARGIDIGGLSHVFNFDVPI------HAEDYVHRIGRTGRAGREGAAFTLA-S 569
Query: 432 PQAMEICTDIEAHFGKKIQLLDIEDAEEIE 461
P IE I ++IE E E
Sbjct: 570 PDDKFAVDAIEKLINAPIPRIEIEGLERAE 599
>UniRef50_A0KXT6 Cluster: DEAD/DEAH box helicase domain protein;
n=22; Gammaproteobacteria|Rep: DEAD/DEAH box helicase
domain protein - Shewanella sp. (strain ANA-3)
Length = 491
Score = 165 bits (402), Expect = 2e-39
Identities = 120/386 (31%), Positives = 194/386 (50%), Gaps = 20/386 (5%)
Query: 80 FEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMIAQSQSGTGKTAAFVLAML 139
F L L L+K V +G+ P+ IQ A+P++LA +N++A +Q+GTGKTA+FVL +L
Sbjct: 3 FSQLGLHSALVKAVTELGYTTPTPIQTKAIPSILAG--KNVLAAAQTGTGKTASFVLPLL 60
Query: 140 SR-VDSNKNYPQ---VLCLSPTYELAIQTGEVAAKMAKFCPEIKLKYAVRGEELPRGSKI 195
R D+ K P+ + L+PT ELA+Q E + AK+ P + + P+ ++
Sbjct: 61 HRFADAPKIRPKRVRAIILTPTRELALQVEENINQYAKYLPLTAMAMYGGVDAAPQKKRL 120
Query: 196 TDHI--LIGTPGKMFDWGVKFGM-FDMGKIKVFVLDEADVMINRQGHQDQCIRIHKCLPS 252
+ + L+ TPG++ D + + FD ++ V VLDEAD M++ G + I + LP
Sbjct: 121 IEGVDLLVATPGRLLDMYTQRAIRFD--EVSVLVLDEADRMLD-MGFIEDINSIIEKLPE 177
Query: 253 TCQMMFFSATYGTAVMQFAEIIVSNPIIIRLLREEESLDNIKQYYVKCKSAEDKYRAICN 312
Q + FSAT V A+ + + I I + R+ + +I Q+ + K + +
Sbjct: 178 QRQNLLFSATLSKQVKALAKSAIPDAIEIEISRKSAASTHIDQWLTTVDK-DKKSALLSH 236
Query: 313 IYGVITIGQAIIFCHTRKTASWLSEKMSKDGHSVAVLSGELTVEQRIAVLDRFRVGLEKV 372
+ QA+IF T+ A+ L ++ K G + R +L F+ G
Sbjct: 237 LIQEQNWSQALIFIQTKHGAAKLVSQLEKRGIVAEAFHSGRSQAVREQLLIDFKAGKVSF 296
Query: 373 LITTNVLSRGIDVEQVTLVVNFDMPMDMNRKADCETYLHRIGRTGRFGKAGIAINLIDSP 432
L+ T V SRGID++ + V+N+D+P + + Y+HRIGRTGR G G AI+ +
Sbjct: 297 LVATGVASRGIDIDALARVINYDLP------DEADDYIHRIGRTGRAGNQGEAISFVSKD 350
Query: 433 QAMEICTDIEAHFGKKIQLLDIEDAE 458
+C IE G I +I E
Sbjct: 351 DFRNLCA-IERRLGHVIVRREIAGFE 375
>UniRef50_P0C2N8 Cluster: ATP-dependent RNA helicase drs-1; n=16;
Fungi/Metazoa group|Rep: ATP-dependent RNA helicase
drs-1 - Neurospora crassa
Length = 829
Score = 165 bits (402), Expect = 2e-39
Identities = 126/416 (30%), Positives = 211/416 (50%), Gaps = 24/416 (5%)
Query: 58 ESKLDIEIQRKDPNSPLYS--VKTFEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLAD 115
E+K+ ++ N P + +F+ + L +L+G+ ++GF P+ IQ +P L
Sbjct: 271 EAKMKEFFAPEEENQPKKKGEMSSFQEMSLSRPILRGLTSVGFTKPTPIQAKTIPISLMG 330
Query: 116 PPQNMIAQSQSGTGKTAAFVLAMLSRVDSN-KNYP--QVLCLSPTYELAIQTGEVAAKMA 172
++++ + +G+GKTAAFV+ +L R+ K P +V+ L+PT ELAIQ VA K+A
Sbjct: 331 --KDVVGGAVTGSGKTAAFVVPILERLLYRPKKVPTTRVVILTPTRELAIQCHAVAVKLA 388
Query: 173 KFCPEIKLKYAVRGEELPRGS---KITDHILIGTPGKMFDWGVKFGMFDMGKIKVFVLDE 229
+IK AV G L ++ ++I TPG+ D F + I++ VLDE
Sbjct: 389 SHT-DIKFCLAVGGLSLKVQEAELRLRPDVVIATPGRFIDHMRNSASFAVDTIEILVLDE 447
Query: 230 ADVMINRQGHQDQCIRIHKCLPSTCQMMFFSATYGTAVMQFAEIIVSNPIIIRLLREEES 289
AD M+ G D+ I LP + Q M FSAT ++V + ++ P+ I ++++
Sbjct: 448 ADRMLE-DGFADELNEILTTLPKSRQTMLFSATMTSSVDRLIRAGLNKPVRIMADSQKKT 506
Query: 290 LDNIKQYYVKCKSAEDKYRA--ICNIYGVITIGQAIIFCHTRKTASWLSEKMSKDGHSVA 347
+ Q +V+ + + R + +I I + IIF +K A + G S A
Sbjct: 507 AGTLVQEFVRLRPGRESKREGYLLHICKTIYTERVIIFFRQKKIAHKMRIIFGLFGLSCA 566
Query: 348 VLSGELTVEQRIAVLDRFRVGLEKVLITTNVLSRGIDVEQVTLVVNFDMPMDMNRKADCE 407
L G + QRI ++ FR G L+ T++ SRG+D++ V V+N++ P E
Sbjct: 567 ELHGSMNQAQRIQSVEDFRDGKVNFLLATDLASRGLDIKGVDTVINYEAPQTP------E 620
Query: 408 TYLHRIGRTGRFGKAGIAINLIDSPQAMEICTDIEA--HFGKKI--QLLDIEDAEE 459
Y+HR+GRT R G++G AI L P + ++A G KI +++D DA++
Sbjct: 621 IYVHRVGRTARAGRSGTAITLAAEPDRKVVKAAVKAGKSQGAKISSRIIDPADADK 676
>UniRef50_Q92GV2 Cluster: ATP-dependent RNA helicase RhlE; n=10;
Rickettsia|Rep: ATP-dependent RNA helicase RhlE -
Rickettsia conorii
Length = 414
Score = 165 bits (401), Expect = 2e-39
Identities = 112/359 (31%), Positives = 191/359 (53%), Gaps = 23/359 (6%)
Query: 75 YSVKTFEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMIAQSQSGTGKTAAF 134
Y +K F +L L+ + M P++IQ+ ++P +A +++A SQ+G+GKT A+
Sbjct: 3 YIMKNF---NLSEELIIALETMNITEPTEIQKQSIPVAMAG--SDILASSQTGSGKTLAY 57
Query: 135 VLAMLSRVDSNKNYPQVLCLSPTYELAIQTGEVAAKMAKFCPEIKLKYAVRGEELPRGS- 193
+L ++ NK L L PT ELA Q K+ +I + GE +P+
Sbjct: 58 LLPLIDSFIKNKT--TALILVPTRELATQIHSTLNKVTTSY-KINSAVLIGGEPMPKQFI 114
Query: 194 --KITDHILIGTPGKMFDWGVKFGMFDMGKIKVFVLDEADVMINRQGHQDQCIRIHKCLP 251
K ++IGTPG++ D + G + +I + VLDE D M++ G ++Q I+K LP
Sbjct: 115 QLKKNPKVIIGTPGRIIDH-LNRGSLKIDRIGITVLDEMDRMLD-MGMKEQLEEINKFLP 172
Query: 252 STCQMMFFSATYGTAVMQFAEIIVSNPIIIRLLREEESLDNIKQYYVKCKSAEDKYRAIC 311
Q++ FSAT ++ ++ ++NP+ I + ++ IKQ + S ++K+ A+
Sbjct: 173 EKRQVLMFSATMPKHIIAVSQKYLNNPVRITVGATNKAAAEIKQESMHV-SDKEKFSALT 231
Query: 312 NIYGVITIGQAIIFCHTRKTASWLSEKMSKDGHSVAVLSGELTVEQRIAVLDRFRVGLEK 371
G G IIF T+++A L++ + + H+ + G+L+ QR V+ FR +
Sbjct: 232 KQLGNRE-GSVIIFVKTKRSADQLAKMLKYENHTAEAIHGDLSQRQRERVILSFRKSNHR 290
Query: 372 VLITTNVLSRGIDVEQVTLVVNFDMPMDMNRKADC-ETYLHRIGRTGRFGKAGIAINLI 429
+++ T+V +RG+D+ V+N+D+PM C E YLHRIGRTGR G G A++ I
Sbjct: 291 IMVATDVAARGLDIPHTQHVINYDLPM-------CPEDYLHRIGRTGRAGATGHALSFI 342
>UniRef50_Q5FUQ9 Cluster: ATP-dependent RNA helicase; n=11; cellular
organisms|Rep: ATP-dependent RNA helicase -
Gluconobacter oxydans (Gluconobacter suboxydans)
Length = 793
Score = 165 bits (401), Expect = 2e-39
Identities = 112/378 (29%), Positives = 195/378 (51%), Gaps = 23/378 (6%)
Query: 80 FEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMIAQSQSGTGKTAAFVLAML 139
F L L +++ + +G+ P+ IQ A+P +L +++ +Q+GTGKTA+F L ML
Sbjct: 293 FADLGLSEPIMRAIEELGYEHPTPIQAQAIPEVLKG--HDVLGVAQTGTGKTASFTLPML 350
Query: 140 SRVDSNK---NYPQVLCLSPTYELAIQTGEVAAKMAKFCPEIKLKYA--VRGEELPRGSK 194
++ ++ P+ L L PT ELA+Q E K+ ++L +A + GE +
Sbjct: 351 QKLAGSRARARMPRSLILEPTRELALQVAENFKLYGKY---LRLTHALLIGGESMAEQRD 407
Query: 195 ITDH---ILIGTPGKMFDWGVKFGMFDMGKIKVFVLDEADVMINRQGHQDQCIRIHKCLP 251
+ + +LI TPG++ D + G+ + + V+DEAD M++ G +I LP
Sbjct: 408 VLNRGVDVLIATPGRLLDLFGRGGLL-LTQTSTLVIDEADRMLD-MGFIPDIEKIVALLP 465
Query: 252 STCQMMFFSATYGTAVMQFAEIIVSNPIIIRLLREEESLDNIKQYYVKCKSAEDKYRAIC 311
+ Q +FFSAT + + A+ + +P+ I + R+ I++ V ++K R +
Sbjct: 466 AHRQTLFFSATMAPEIRRLADAFLRHPVEITVSRQSSVATTIEEALVIVPE-DEKRRTLK 524
Query: 312 NIYGVITIGQAIIFCHTRKTASWLSEKMSKDGHSVAVLSGELTVEQRIAVLDRFRVGLEK 371
+ + AI+FC+ ++ + + ++K L G+L R + L+RFR G K
Sbjct: 525 KLLRRENVQSAIVFCNRKRDVDMIQQYLTKHDIEAGHLHGDLAQSLRFSTLERFRSGELK 584
Query: 372 VLITTNVLSRGIDVEQVTLVVNFDMPMDMNRKADCETYLHRIGRTGRFGKAGIAINLIDS 431
L+ ++V +RGID+ ++ V N+D+P + E Y+HRIGRTGR G G A +L +
Sbjct: 585 FLVCSDVAARGIDIGGLSHVFNYDLPF------NAEDYVHRIGRTGRAGNEGHAFSLA-T 637
Query: 432 PQAMEICTDIEAHFGKKI 449
P+ + IE GK I
Sbjct: 638 PRDRRLLEAIETLTGKVI 655
>UniRef50_Q15T34 Cluster: DEAD/DEAH box helicase-like; n=1;
Pseudoalteromonas atlantica T6c|Rep: DEAD/DEAH box
helicase-like - Pseudoalteromonas atlantica (strain T6c
/ BAA-1087)
Length = 458
Score = 165 bits (401), Expect = 2e-39
Identities = 116/381 (30%), Positives = 200/381 (52%), Gaps = 24/381 (6%)
Query: 79 TFEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMIAQSQSGTGKTAAFVLAM 138
+FEAL L+ L+ + G++ + IQ A+P +LA +++A +Q+GTGKTAAF L +
Sbjct: 2 SFEALGLRDELIHAIATQGYSVATDIQREAIPLVLAQ--HDLLAVAQTGTGKTAAFTLPL 59
Query: 139 LSRVDSNKNYP----QVLCLSPTYELAIQTGEVAAKMAKFCPEIKLK-YAVRGEEL--PR 191
L R+ + ++ + L ++PT ELA Q VA + + ++ ++ +AV G P+
Sbjct: 60 LQRLAAKQSTKVQGVRSLIVTPTRELAAQ---VAISVEIYSTQLNIRSFAVYGGVRIEPQ 116
Query: 192 GSKITD--HILIGTPGKMFDWGVKFGMFDMGKIKVFVLDEADVMINRQGHQDQCIRIHKC 249
+++ + +LI TPG++ D + + +++ V DEAD M++ G D RI
Sbjct: 117 IAQLQEGVDVLIATPGRLLDLYEQRALH-FENLEILVFDEADRMLDL-GFIDDVKRIQSL 174
Query: 250 LPSTCQMMFFSATYGTAVMQFAEIIVSNPIIIRLLREEESLDNIKQYYVKCKSAEDKYRA 309
LP Q + FSAT+ + FA +++ P I + ++D + Q + + A K A
Sbjct: 175 LPVKRQTLLFSATFSKQIKHFAREMLNAPKTIEVSAVNSTVDLVAQTFHPIEQAR-KSAA 233
Query: 310 ICNIYGVITIGQAIIFCHTRKTASWLSEKMSKDGHSVAVLSGELTVEQRIAVLDRFRVGL 369
+ + Q ++F T++TA L ++ G + A + T R L+ F+ G
Sbjct: 234 LIQLIQQHRWSQTLVFIRTKRTADALVTELEDAGIAAASIHANRTQHARTQALNAFKAGE 293
Query: 370 EKVLITTNVLSRGIDVEQVTLVVNFDMPMDMNRKADCETYLHRIGRTGRFGKAGIAINLI 429
+VL+ T++ +RGIDV Q+ VVN+D+P E Y+HRIGRTGR G G AI+L
Sbjct: 294 IQVLVATDIAARGIDVSQLPCVVNYDLPYVP------EDYVHRIGRTGRAGNTGTAISLF 347
Query: 430 DSPQAMEICTDIEAHFGKKIQ 450
SP + +E + + ++
Sbjct: 348 -SPDEISQLQSLERYLDQHLK 367
>UniRef50_Q54TJ4 Cluster: Putative uncharacterized protein; n=1;
Dictyostelium discoideum AX4|Rep: Putative
uncharacterized protein - Dictyostelium discoideum AX4
Length = 783
Score = 165 bits (400), Expect = 3e-39
Identities = 114/359 (31%), Positives = 186/359 (51%), Gaps = 17/359 (4%)
Query: 79 TFEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMIAQSQSGTGKTAAFVLAM 138
TFE LHL LLK V +GF+ P+ IQ A+P LA ++++A + +G+GKTAAF+L +
Sbjct: 191 TFEELHLSRPLLKAVQKLGFSQPTPIQAKAIP--LALNGKDILASASTGSGKTAAFLLPV 248
Query: 139 LSRV---DSNKNYPQVLCLSPTYELAIQTGEVAAKMAKFC--PEIKLKYAVRGEELPRGS 193
L R+ DS +VL L PT ELA+Q V +A+F + + +
Sbjct: 249 LERLLFRDSEYRAIRVLILLPTRELALQCQSVMENLAQFSNITSCLIVGGLSNKAQEVEL 308
Query: 194 KITDHILIGTPGKMFDWGVKFGMFDMGKIKVFVLDEADVMINRQGHQDQCIRIHKCLPST 253
+ + ++I TPG++ D + + +++ +LDEAD +++ G +D+ +I + P+
Sbjct: 309 RKSPDVVIATPGRLIDHLLNAHGIGLDDLEILILDEADRLLD-MGFKDEINKIVESCPTN 367
Query: 254 CQMMFFSATYGTAVMQFAEIIVSNPIIIRLLREEESLDNIKQYYVKCKSAE--DKYRAIC 311
Q M FSAT V A++ + PI +++ + ++Q +VK K D+ +
Sbjct: 368 RQTMLFSATLNDEVKTLAKLSLQQPIRVQVDALMQVTSTLEQEFVKIKPQHLSDRPAILL 427
Query: 312 NIYG-VITIGQAIIFCHTRKTASWLSEKMSKDGHSVAVLSGELTVEQRIAVLDRFRVGLE 370
++ V G IIFC ++K L A L G L+ EQR L +FR G
Sbjct: 428 SLCTRVFNQGGTIIFCRSKKEVHRLRIIFGLSDLKAAELHGNLSQEQRFDSLQQFRDGQV 487
Query: 371 KVLITTNVLSRGIDVEQVTLVVNFDMPMDMNRKADCETYLHRIGRTGRFGKAGIAINLI 429
L+ ++V SRG+D+ V V+N++MP +M Y+HR+GRT R G G + + I
Sbjct: 488 NYLLASDVASRGLDIIGVKTVINYNMPNNM------ANYIHRVGRTARAGMDGKSCSFI 540
>UniRef50_Q87HW1 Cluster: ATP-dependent RNA helicase, DEAD box
family; n=6; Vibrio|Rep: ATP-dependent RNA helicase,
DEAD box family - Vibrio parahaemolyticus
Length = 421
Score = 164 bits (399), Expect = 4e-39
Identities = 112/355 (31%), Positives = 193/355 (54%), Gaps = 17/355 (4%)
Query: 80 FEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMIAQSQSGTGKTAAFVLAML 139
F L ++ L++ + M P+ +QE ++P +L ++++A +Q+GTGKTAAF L ++
Sbjct: 9 FADLGIEQQLVETLNNMNIVTPTPVQEKSIPHVLEG--KDLLAAAQTGTGKTAAFGLPII 66
Query: 140 SRVDSNKNY--PQVLCLSPTYELAIQTGEVAAKMAKFCPEIKLKYAVRGEELP-RGSKIT 196
V K P L L PT ELA Q + + A+ ++++ G + + +K+
Sbjct: 67 QAVQQKKRNGTPHALILVPTRELAQQVFDNLTQYAEHT-DLRIVCVYGGTSIGVQKNKLE 125
Query: 197 D--HILIGTPGKMFDWGVKFGMFDMGKIKVFVLDEADVMINRQGHQDQCIRIHKCLPSTC 254
+ ILI TPG++ D G ++ K V VLDEAD M++ G RI + LP+
Sbjct: 126 EGADILIATPGRLLDHLFN-GNVNISKTGVLVLDEADRMLD-MGFWPDLQRILRRLPNDK 183
Query: 255 QMMFFSATYGTAVMQFAEIIVSNPIIIRLLREEESLDNIKQYYVKCKSAEDKYRAICNIY 314
Q+M FSAT+ + A ++ +P+ + + + + +KQ V + K + +
Sbjct: 184 QIMLFSATFEKRIKTIAYKLMDSPVEVEVSPANTTAETVKQM-VYPVDKKRKRELLAYLI 242
Query: 315 GVITIGQAIIFCHTRKTASWLSEKMSKDGHSVAVLSGELTVEQRIAVLDRFRVGLEKVLI 374
G Q ++F T++ + L++++ DG ++G+ + R LD F+ G + LI
Sbjct: 243 GSRNWQQVLVFTKTKQGSDELAKELKLDGIKAVSINGDKSQGARQRALDEFKQGKVRALI 302
Query: 375 TTNVLSRGIDVEQVTLVVNFDMPMDMNRKADCETYLHRIGRTGRFGKAGIAINLI 429
T+V +RG+D++++ VVNFDMP KA E Y+HRIGRTGR GK+G+A++L+
Sbjct: 303 ATDVAARGLDIQELEQVVNFDMPF----KA--EDYVHRIGRTGRAGKSGLAVSLM 351
>UniRef50_Q81LV0 Cluster: ATP-dependent RNA helicase, DEAD/DEAH box
family; n=20; Bacillales|Rep: ATP-dependent RNA
helicase, DEAD/DEAH box family - Bacillus anthracis
Length = 436
Score = 164 bits (399), Expect = 4e-39
Identities = 110/387 (28%), Positives = 200/387 (51%), Gaps = 18/387 (4%)
Query: 78 KTFEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMIAQSQSGTGKTAAFVLA 137
+TF KP L+ V + F P+ IQ+ P + ++I QSQ+G+GKT A++L
Sbjct: 4 QTFTQYDFKPFLIDAVRELRFTEPTGIQQKIFPVVKKGV--SVIGQSQTGSGKTHAYLLP 61
Query: 138 MLSRVDSNKNYPQVLCLSPTYELAIQTGEVAAKMAKFCPE---IKLKYAVRGEELPRG-- 192
L+R++ + Q++ +PT ELA Q E K+ KFC E I + + G + R
Sbjct: 62 TLNRINPGREEVQLVITAPTRELAQQIYEEIVKLTKFCAEDQMITARCLIGGTDKQRSIE 121
Query: 193 -SKITDHILIGTPGKMFDWGVKFGMFDMGKIKVFVLDEADVMINRQGHQDQCIRIHKCLP 251
K HI++GTPG++ D + +F + K ++DEAD+M++ G +I +P
Sbjct: 122 KLKKQPHIVVGTPGRIKDLVEEQALF-VHKANTIIVDEADLMLD-MGFIHDVDKIAARMP 179
Query: 252 STCQMMFFSATYGTAVMQFAEIIVSNPIIIRLLREEESLDNIKQYYVKCKSAEDKYRAIC 311
QM+ FSAT + F + + NP I + ++ + NI+ Y V K +K +
Sbjct: 180 KNLQMLVFSATIPQKLKPFLKKYMENPEHIHINPKQVAAGNIEHYLVPSKH-RNKIDLVN 238
Query: 312 NIYGVITIGQAIIFCHTRKTASWLSEKMSKDGHSVAVLSGELTVEQRIAVLDRFRVGLEK 371
+ A++F +T+K A +++ + + G V + G+L+ R ++ + R +
Sbjct: 239 KMLLQFKPYLAVVFTNTKKMADQVADGLMERGLKVGRIHGDLSPRDRKKMMKQIRDLEFQ 298
Query: 372 VLITTNVLSRGIDVEQVTLVVNFDMPMDMNRKADCETYLHRIGRTGRFGKAGIAINLIDS 431
++ T++ +RGID+E ++ V+N+++P D+ + ++HR+GRT R G +GIA+ + D
Sbjct: 299 YIVATDLAARGIDIEGISHVINYELPSDL------DFFVHRVGRTARAGHSGIAVTIYD- 351
Query: 432 PQAMEICTDIEAHFGKKIQLLDIEDAE 458
P E +E + + +D+ E
Sbjct: 352 PANEEALDSLEKQRHIEFKHVDLRGDE 378
>UniRef50_Q1Q4V2 Cluster: Similar to ATP-independent RNA helicase
DbpA; n=1; Candidatus Kuenenia stuttgartiensis|Rep:
Similar to ATP-independent RNA helicase DbpA -
Candidatus Kuenenia stuttgartiensis
Length = 407
Score = 164 bits (399), Expect = 4e-39
Identities = 110/355 (30%), Positives = 181/355 (50%), Gaps = 19/355 (5%)
Query: 80 FEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMIAQSQSGTGKTAAFVLAML 139
F L L ++LK + MG+N + IQE P + A ++ A +++G+GKTAA + ++
Sbjct: 3 FSDLELSADILKALDKMGYNEMTPIQEATYPIIFAG--HDLCALAETGSGKTAACAIPLI 60
Query: 140 SRVDSNKNYPQVLCLSPTYELAIQTGEVAAKMAKFCPEIKLKYAVRGEELPRGSKI---- 195
+VD + + Q L + PT EL +Q E K+A I YAV G R ++I
Sbjct: 61 QKVDPSLDAIQGLVIVPTRELCMQYVEEIRKIAAKTDVIP--YAVYGG-FDRAAQIARVK 117
Query: 196 -TDHILIGTPGKMFDWGVKFGMFDMGKIKVFVLDEADVMINRQGHQDQCIRIHKCLPSTC 254
T HIL+ TPG++ D + G+ +IK +LDEAD ++ + G + I C+
Sbjct: 118 QTVHILVATPGRLIDLLYE-GILSFARIKCVILDEADELL-KVGFLEDIEFILSCIRHKH 175
Query: 255 QMMFFSATYGTAVMQFAEIIVSNPIIIRLLREEESLDNIKQYYVKCKSAEDKYRAICNIY 314
Q + FSAT + + + + P I L+ + + ++I+ Y+ + + K+ +
Sbjct: 176 QTLLFSATMPDDIKKLTQDCLHEPQYISLVTKRSAPESIEHYF-SYVNPKQKHEELVKYL 234
Query: 315 GVITIGQAIIFCHTRKTASWLSEKMSKDGHSVAVLSGELTVEQRIAVLDRFRVGLEKVLI 374
+ QA+IFC+ R L + KD H + + L ++R +++ RFR + LI
Sbjct: 235 KGEEVNQALIFCNARHMVDSLFRLLRKDFHDIEYMHAGLAQDKRSSIIRRFRSQKIRYLI 294
Query: 375 TTNVLSRGIDVEQVTLVVNFDMPMDMNRKADCETYLHRIGRTGRFGKAGIAINLI 429
++V RG+D V+ V+N+DMP D E Y HR GR GR G+ GIA L+
Sbjct: 295 ASDVAGRGLDFSHVSHVINWDMP------RDGEQYTHRTGRAGRMGRKGIAFTLV 343
>UniRef50_Q7QQX6 Cluster: GLP_383_7421_6129; n=1; Giardia lamblia
ATCC 50803|Rep: GLP_383_7421_6129 - Giardia lamblia ATCC
50803
Length = 430
Score = 164 bits (399), Expect = 4e-39
Identities = 101/356 (28%), Positives = 191/356 (53%), Gaps = 15/356 (4%)
Query: 80 FEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMIAQSQSGTGKTAAFVLAML 139
F +L LK LL G+ GF + +QE A+P +LA ++++A++++GTGKT +F++ +L
Sbjct: 23 FSSLGLKQELLMGLTQEGFQQLTPVQELAIPHILAR--RDVVARAKNGTGKTGSFLIPIL 80
Query: 140 SRVDSNKNYPQVLCLSPTYELAIQTGEVAAKMAKFCPEI--KLKYAVRGEELPRG---SK 194
V+ K++ Q L L T ELA+QT +VA ++K P++ ++ A+ G + ++
Sbjct: 81 QMVNPAKDHIQALVLLHTRELAMQTAKVAKTLSKNMPDVTGRIMCAIGGVSIAEDRERAR 140
Query: 195 ITDHILIGTPGKMFDWGVKFGMFDMGKIKVFVLDEADVMINRQGHQDQCIRIHKCLPSTC 254
+++ TPG++ + + + + VLDEAD+++++ + + C
Sbjct: 141 EKPLVVLATPGRLQQL-IDEEILNFRDCSIVVLDEADMLLSQNFIRSIENCLAACSNKRR 199
Query: 255 QMMFFSATYGTAVMQFAEIIVSNPIIIRLLREEESLDNIKQYYVKCKSAEDKYRAICNIY 314
Q +FFSAT+ ++ +F + + +P + +++ L + QY K K + + +
Sbjct: 200 QTLFFSATFSNSLKEFCDKHLRDPEYVNAMQDSLLLRGVTQYVCMLKEDRYKLKLLSLLM 259
Query: 315 GVITIGQAIIFCHTRKTASWLSEKMSKDGHSVAVLS-GELTVEQRIAVLDRFRVGLEKVL 373
+ I Q I+F ++ + L + + + + ++ E+R + D F G ++L
Sbjct: 260 KHLKINQCIVFVNSVQRCEALYRSICDEFRVPCLYTHSRMSPEERSRIYDNFIHGQARLL 319
Query: 374 ITTNVLSRGIDVEQVTLVVNFDMPMDMNRKADCETYLHRIGRTGRFGKAGIAINLI 429
I T + +RGID+ V +VVNFD P+ + YLHRIGR+GR+G GIAI ++
Sbjct: 320 IATELFTRGIDIRMVNVVVNFDTPL------SADAYLHRIGRSGRYGHLGIAITMV 369
>UniRef50_UPI0000498D2C Cluster: DEAD/DEAH box helicase; n=3;
Entamoeba histolytica HM-1:IMSS|Rep: DEAD/DEAH box
helicase - Entamoeba histolytica HM-1:IMSS
Length = 419
Score = 164 bits (398), Expect = 5e-39
Identities = 113/410 (27%), Positives = 202/410 (49%), Gaps = 23/410 (5%)
Query: 60 KLDIEIQRKDPNSPLYSVKTFEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQN 119
K+ +E KD +F+ + LK +++ + GF PS++Q +P L Q+
Sbjct: 18 KMQVEPSNKDT---YVGTVSFQEMGLKKEIMQSITDCGFEHPSEVQSQVIPKALLR--QD 72
Query: 120 MIAQSQSGTGKTAAFVLAMLSRVDSNKNYPQVLCLSPTYELAIQTGEVAAKMAKFCPEIK 179
++ Q++SG GKTA FVL++L++ ++ + + T ELA Q +M K E
Sbjct: 73 ILCQAKSGMGKTAVFVLSILNQGLFLGDHVSAIVICHTRELARQVQNEFDRMKKRLVESI 132
Query: 180 LKYAVRGEEL---PRGSKITD------HILIGTPGKMFDWGVKFGMFDMGKIKVFVLDEA 230
K + P + + D I++GTPG++ G D+ K+ FV+DE
Sbjct: 133 GKDIQTASYIGGNPESNDVDDLKNRKPTIIVGTPGRLASLN-NSGALDLSKLDTFVIDEC 191
Query: 231 DVMINRQGHQDQCIRIHKCLPSTCQMMFFSATYGTAVMQFAEIIVSNPIIIRLLREEESL 290
D +++ + D + + Q+M FSAT + NP + + E+
Sbjct: 192 DKILSSKSELD-IMSLFMSSSKNKQVMMFSATISEQNKALCRKYLKNPFEVFIDDGEKLF 250
Query: 291 DNIKQYYVKCKSAEDKYRAICNIYGVITIGQAIIFCHTRKTASWLSEKMSKDGHSVAVLS 350
+ Y K +K + I I QAIIF ++ + +++ K+ + +L
Sbjct: 251 LHGLHLYSKKLQDMEKQDKLGEILDEIDFNQAIIFADRKERCQAIVQRLKKEKYPCGILY 310
Query: 351 GELTVEQRIAVLDRFRVGLEKVLITTNVLSRGIDVEQVTLVVNFDMPMDMNRKADCETYL 410
G + R +RFR G ++L++T++ RGID+E+V LVVNFDM +D ++ +L
Sbjct: 311 GRMEEYLREREFERFRKGESRILVSTDLCGRGIDIEKVNLVVNFDMALDSDQ------FL 364
Query: 411 HRIGRTGRFGKAGIAINLIDSPQAMEICTDIEAHFGKKIQLLDIEDAEEI 460
HR+GR GRFG G+AI+ ID+ + ++ ++++ F +++ L +D +EI
Sbjct: 365 HRVGRAGRFGTKGVAISFIDTEEDEKVLKEVQSRFAVQMKELP-DDLKEI 413
>UniRef50_Q0HYG8 Cluster: DEAD/DEAH box helicase domain protein;
n=62; Proteobacteria|Rep: DEAD/DEAH box helicase domain
protein - Shewanella sp. (strain MR-7)
Length = 549
Score = 164 bits (398), Expect = 5e-39
Identities = 115/384 (29%), Positives = 201/384 (52%), Gaps = 20/384 (5%)
Query: 79 TFEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMIAQSQSGTGKTAAFVLAM 138
+F +L L + K V G++ PS IQ A+P +L ++++A +Q+GTGKTA F L +
Sbjct: 2 SFSSLGLSLPIQKAVTEQGYDTPSPIQAQAIPAVLTG--KDVMAAAQTGTGKTAGFTLPL 59
Query: 139 LSRVDS-NK---NYPQVLCLSPTYELAIQTGEVAAKMAKFCPEIKLKYAVRGEEL-PRGS 193
L + NK + L L+PT ELA Q E K+ P ++ G + P+
Sbjct: 60 LELLSKGNKAKAGQIRALVLTPTRELAAQVSESVETYGKYLP-LRSAVVFGGVPINPQIQ 118
Query: 194 KITD--HILIGTPGKMFDWGVKFGMFDMGKIKVFVLDEADVMINRQGHQDQCIRIHKCLP 251
K+ +L+ TPG++ D V+ + ++++ VLDEAD M++ G +I LP
Sbjct: 119 KLRHGVDVLVATPGRLLDL-VQQNVVKFNQLEILVLDEADRMLD-MGFIRDIKKILALLP 176
Query: 252 STCQMMFFSATYGTAVMQFAEIIVSNPIIIRLLREEESLDNIKQYYVKCKSAEDKYRAIC 311
+ Q + FSAT+ + + A+ +V+ P+ I + + + +KQ+ + K +
Sbjct: 177 AKRQNLMFSATFSDEIRELAKGLVNQPVEISVTPRNAAANTVKQWICPVDKNQ-KSALLI 235
Query: 312 NIYGVITIGQAIIFCHTRKTASWLSEKMSKDGHSVAVLSGELTVEQRIAVLDRFRVGLEK 371
+ Q ++F T+ A+ L++ + + S A + G + R L F+ G +
Sbjct: 236 QLIKQEDWQQVLVFSRTKHGANRLAKSLIQAEISAAAIHGNKSQGARTKALADFKSGEVR 295
Query: 372 VLITTNVLSRGIDVEQVTLVVNFDMPMDMNRKADCETYLHRIGRTGRFGKAGIAINLIDS 431
VL+ T++ +RG+D++Q+ VVNFD+P N D Y+HRIGRTGR G +G A++L+ S
Sbjct: 296 VLVATDIAARGLDIDQLPQVVNFDLP---NVPED---YVHRIGRTGRAGASGQAVSLVSS 349
Query: 432 PQAMEICTDIEAHFGKKIQLLDIE 455
+ ++ DIE + ++ +IE
Sbjct: 350 -EEFKLLRDIERLINRVLERQEIE 372
>UniRef50_A6VTY7 Cluster: DEAD/DEAH box helicase domain protein;
n=48; root|Rep: DEAD/DEAH box helicase domain protein -
Marinomonas sp. MWYL1
Length = 463
Score = 164 bits (398), Expect = 5e-39
Identities = 120/362 (33%), Positives = 191/362 (52%), Gaps = 27/362 (7%)
Query: 79 TFEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMIAQSQSGTGKTAAFVLAM 138
+F L L +LK + G+ PS IQ A+P +L Q+++A +Q+GTGKTA F L +
Sbjct: 6 SFNKLGLSAPILKAIEDQGYTEPSAIQAQAIPAILEG--QDVMAAAQTGTGKTAGFTLPL 63
Query: 139 LSRV----DSNKNYPQVLCLSPTYELAIQTGEVAAKMAKFCPEIKLKYAVRGEEL-PRGS 193
L + ++ N + L L+PT ELA Q E + +K G ++ P+
Sbjct: 64 LEILSKGENAQSNQVRALVLTPTRELAAQVAESVKNYGQHL-SLKSTVVFGGVKINPQMM 122
Query: 194 KITD--HILIGTPGKMFD-WGVKFGMFDMGKIKVFVLDEADVMINRQGHQDQCIRIHKCL 250
+ ILI TPG+M D + K FD K++V VLDEAD M++ G +I L
Sbjct: 123 ALRRGADILIATPGRMMDLYNQKAVRFD--KLEVLVLDEADRMLD-MGFIHDIKKILAIL 179
Query: 251 PSTCQMMFFSATYGTAVMQFAEIIVSNPIIIRLLREEESLDNIKQYYVKCKSAEDKYRAI 310
P Q + FSAT+ + Q A+ +V+NPI I + + +++Q+ DK R
Sbjct: 180 PKKRQNLLFSATFSPEIRQLAKGLVNNPIEISVTPRNATAVSVEQWL----HPVDKKRKT 235
Query: 311 CNIYGVITIG---QAIIFCHTRKTASWLSEKMSKDGHSVAVLSGELTVEQRIAVLDRFRV 367
+ +I G QA++F T+ A+ +++++ G + + G + R L F+
Sbjct: 236 ELLIQLIADGRWDQALVFSRTKHGANKITKQLEDAGIRASAIHGNKSQGARTRALADFKE 295
Query: 368 GLEKVLITTNVLSRGIDVEQVTLVVNFDMPMDMNRKADCETYLHRIGRTGRFGKAGIAIN 427
G ++L+ T++ +RG+D+EQ+ VVNFD+P D+ E Y+HRIGRTGR G G AI+
Sbjct: 296 GRIRILVATDIAARGLDIEQLPHVVNFDLP-DV-----AEDYVHRIGRTGRAGATGKAIS 349
Query: 428 LI 429
L+
Sbjct: 350 LV 351
>UniRef50_Q6CZD9 Cluster: ATP-dependent RNA helicase rhlB; n=2;
Gammaproteobacteria|Rep: ATP-dependent RNA helicase rhlB
- Erwinia carotovora subsp. atroseptica (Pectobacterium
atrosepticum)
Length = 430
Score = 164 bits (398), Expect = 5e-39
Identities = 121/385 (31%), Positives = 206/385 (53%), Gaps = 27/385 (7%)
Query: 80 FEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMIAQSQSGTGKTAAFVLA-- 137
F L P +++ + + GF+ + IQ ALP L+ +++ Q+Q+GTGKT AF+ +
Sbjct: 11 FSDFALHPQVIEALESKGFHYCTPIQALALPLTLSG--RDVAGQAQTGTGKTLAFLASTF 68
Query: 138 --MLSR---VDSNKNYPQVLCLSPTYELAIQTGEVAAKMAKFCPEIKLKYAVRGEELPRG 192
+LS + N P+ L ++PT ELA+Q A ++ +KL A G+ +
Sbjct: 69 HYLLSHPANAERQTNQPRALIMAPTRELAVQIHSDAEALSHLTG-LKLGLAYGGDGYDKQ 127
Query: 193 SKITDH---ILIGTPGKMFDWGVKFGMFDMGKIKVFVLDEADVMINRQGHQDQCIR-IHK 248
K+ ++ IL+GT G++ D+ K ++G I+V VLDEAD M + +D IR + +
Sbjct: 128 LKVLENGVDILVGTTGRLIDYA-KQNHINLGAIQVVVLDEADRMYDLGFIKD--IRWLFR 184
Query: 249 CLPSTCQM--MFFSATYGTAVMQFAEIIVSNPIIIRLLREEESLDNIKQYYVKCKSAEDK 306
+P+T Q M FSAT V + A ++N + + E+++ I + S E+K
Sbjct: 185 RMPATSQRLNMLFSATLSYRVRELAFEQMNNAEYVEVEPEQKTGHRITEELFY-PSNEEK 243
Query: 307 YRAICNIYGVITIGQAIIFCHTRKTASWLSEKMSKDGHSVAVLSGELTVEQRIAVLDRFR 366
R + + + IIF +T+ + ++ DGH V +L+G++ ++R+ +L+ F
Sbjct: 244 MRLLQTLLEEEWPDRCIIFANTKHRCEDVWGHLAADGHRVGLLTGDVAQKKRLRILEEFT 303
Query: 367 VGLEKVLITTNVLSRGIDVEQVTLVVNFDMPMDMNRKADCETYLHRIGRTGRFGKAGIAI 426
G +L+ T+V +RG+ + VT V N+D+P DCE Y+HRIGRTGR G++G +I
Sbjct: 304 QGSIDILVATDVAARGLHIPSVTHVFNYDLP------DDCEDYVHRIGRTGRAGQSGFSI 357
Query: 427 NLIDSPQAMEICTDIEAHFGKKIQL 451
+L A+ + IE + G I L
Sbjct: 358 SLACEEYALNL-PAIETYIGHGIPL 381
>UniRef50_A6QYH1 Cluster: 2-isopropylmalate synthase; n=4;
Ascomycota|Rep: 2-isopropylmalate synthase - Ajellomyces
capsulatus NAm1
Length = 1466
Score = 163 bits (397), Expect = 7e-39
Identities = 122/407 (29%), Positives = 201/407 (49%), Gaps = 28/407 (6%)
Query: 66 QRKDPNSPLYSVKTFEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMIAQSQ 125
++ N L S K+F+A L +L+G+ ++GF P+ IQ +P L ++++ +
Sbjct: 293 EKPSANGDLKSAKSFQAFSLSRPILRGLTSVGFTTPTPIQRKTIPVALLG--KDVVGGAV 350
Query: 126 SGTGKTAAFVLAMLSRVDSN-KNYP--QVLCLSPTYELAIQTGEVAAKMAKFCPEIKLKY 182
+G+GKT AF++ +L R+ + P +V L PT ELA+Q VA K+A F +I
Sbjct: 351 TGSGKTGAFIIPILERLLYRPRKVPTSRVAILMPTRELAVQCYNVATKLATFT-DITFCQ 409
Query: 183 AVRGEELPRGSKITDH---ILIGTPGKMFDWGVKFGMFDMGKIKVFVLDEADVMINRQGH 239
V G L I ++I TPG+ D F + +++ VLDEAD M+ G
Sbjct: 410 LVGGFSLREQENILKKRPDVIIATPGRFIDHMRNSASFTVDTLEILVLDEADRMLE-DGF 468
Query: 240 QDQCIRIHKCLPSTCQMMFFSATYGTAVMQFAEIIVSNPIIIRLLREEESLDNIKQYYVK 299
D+ I +P + Q M FSAT V + + +S P+ + + +++++ + Q +V+
Sbjct: 469 ADELNEILTTIPKSRQTMLFSATMTNNVDKLIRVGLSRPVRLMVDAKKQTVGTLIQEFVR 528
Query: 300 CKSAEDKYR-----AIC-NIYGVITIGQAIIFCHTRKTASWLSEKMSKDGHSVAVLSGEL 353
+ ++ R +C NIY + I+F ++K A + G V L G +
Sbjct: 529 LRPGREEKRLGYLIVLCKNIYK----DRVIVFFRSKKEAHRVRIIFGLLGLKVTELHGSM 584
Query: 354 TVEQRIAVLDRFRVGLEKVLITTNVLSRGIDVEQVTLVVNFDMPMDMNRKADCETYLHRI 413
+ EQRI ++ FR G L+ T+V SRG+D++ V V+N++ P YLHR+
Sbjct: 585 SQEQRIKSVESFRDGKVSFLLATDVASRGLDIKGVETVINYEAPQSH------AIYLHRV 638
Query: 414 GRTGRFGKAGIAINLIDSPQAMEICTDIEA--HFGKKIQLLDIEDAE 458
GRT R G++G A L P + ++ G KI IE AE
Sbjct: 639 GRTARAGRSGRACTLAAEPDRKVVKAAVKTGRAQGAKIVSRLIETAE 685
>UniRef50_Q5FNK0 Cluster: ATP-dependent RNA helicase; n=1;
Gluconobacter oxydans|Rep: ATP-dependent RNA helicase -
Gluconobacter oxydans (Gluconobacter suboxydans)
Length = 393
Score = 163 bits (396), Expect = 9e-39
Identities = 121/391 (30%), Positives = 193/391 (49%), Gaps = 22/391 (5%)
Query: 70 PNSPLYSVKT----FEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMIAQSQ 125
P SP+ + T FE L L LL + G PS IQ A+P LL ++++ SQ
Sbjct: 8 PASPIATSATPAPGFEELGLIAPLLATLAQAGHKRPSLIQTQAIPPLLEG--KDVLVGSQ 65
Query: 126 SGTGKTAAFVLAMLSRVDSNKNYP--QVLCLSPTYELAIQTGEVAAKMAKFCPEIKLKYA 183
+G+GKTAAFVL ML ++ P + L L PT ELA QT V ++ + +K +
Sbjct: 66 TGSGKTAAFVLPMLQKLTEAGPAPGPRALILEPTRELAAQTAAVCRQLGRRL-SLKTRVI 124
Query: 184 VRGEELPRG-SKITD--HILIGTPGKMFDWGVKFGMFDMGKIKVFVLDEADVMINRQGHQ 240
G + ++D I++ T G++ D ++ + + + VLDEAD +++
Sbjct: 125 CGGTSREQQVQSVSDGVDIIVATHGRLLDLVMQADLV-LEHLTYLVLDEADRLLDEDFSA 183
Query: 241 DQCIRIHKCLPSTCQMMFFSATYGTAVMQFAEIIVSNPIIIRLLREEESLDNIKQYYVKC 300
Q +F SAT VM A+ + NP+ + + E + NI+Q +
Sbjct: 184 SMTALTPYFPDQPPQTVFCSATLPEPVMDLAKRVTRNPVRVEIAAESFTPKNIRQRAIFV 243
Query: 301 KSAEDKYRAICNIYGVITIGQAIIFCHTRKTASWLSEKMSKDGHSVAVLSGELTVEQRIA 360
+ +DK + + G++I+F T+ T L++ + + V L G+ T R
Sbjct: 244 EK-DDKPETVARLLKHFE-GRSIVFARTKNTVDALAKTLRRHNLRVETLHGDRTQGARNK 301
Query: 361 VLDRFRVGLEKVLITTNVLSRGIDVEQVTLVVNFDMPMDMNRKADCETYLHRIGRTGRFG 420
LD FR G VL+TT++ SRG+D+ V LV+N DMP E Y+HRIGRT R G
Sbjct: 302 ALDLFRQGRIPVLVTTDIASRGLDIPDVDLVINMDMP------ETPEAYVHRIGRTARAG 355
Query: 421 KAGIAINLIDSPQAMEICTDIEAHFGKKIQL 451
+ G+A +LI+ + D+E H G ++++
Sbjct: 356 RKGVAFSLINIDE-RTFLRDVEKHIGYRVRI 385
>UniRef50_Q3AZR1 Cluster: DEAD/DEAH box helicase-like; n=2;
Synechococcus|Rep: DEAD/DEAH box helicase-like -
Synechococcus sp. (strain CC9902)
Length = 458
Score = 163 bits (396), Expect = 9e-39
Identities = 114/388 (29%), Positives = 198/388 (51%), Gaps = 20/388 (5%)
Query: 79 TFEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMIAQSQSGTGKTAAFVLAM 138
TFE L L ++ + G+ +P+ IQ +P +L ++++A +Q+GTGKTAAF+L +
Sbjct: 25 TFEQLELCAETVRSIKESGYLSPTPIQALTIPEVLQG--KDIMASAQTGTGKTAAFILPI 82
Query: 139 LSRV---DSNKNYP-QVLCLSPTYELAIQTGEVAAKMAKFCPEIKLKYAVRGEEL-PRGS 193
+ + D K Y L L+PT ELA Q A K+ ++ G + P+
Sbjct: 83 IELLRAEDKPKRYQVHSLVLTPTRELAAQVEASAKAYTKYLA-LRSDAVFGGVSIRPQVK 141
Query: 194 KITD--HILIGTPGKMFDWGVKFGMFDMGKIKVFVLDEADVMINRQGHQDQCIRIHKCLP 251
++ IL+ TPG++ D + M +KV VLDEAD M++ G ++ + LP
Sbjct: 142 RLQGGVDILVATPGRLLDL-INQKMIRFDNLKVLVLDEADRMLD-MGFIRDIKKVIEYLP 199
Query: 252 STCQMMFFSATYGTAVMQFAEIIVSNPIIIRLLREEESLDNIKQYYVKCKSAEDKYRAIC 311
Q M FSAT+ T + + A ++++P+ I+ + ++ I+ C A K +C
Sbjct: 200 KNRQNMMFSATFSTPIKKLALGLLNDPVEIKASVQNQAAPTIEHLVHPCDMAR-KVDLLC 258
Query: 312 NIYGVITIGQAIIFCHTRKTASWLSEKMSKDGHSVAVLSGELTVEQRIAVLDRFRVGLEK 371
++ Q ++F T+ A + + + + + G + R L+ F+ G K
Sbjct: 259 HLIKTNKWKQVLVFARTKHGADKVVKILCHQHMRASAIHGNKSQGARTRALEGFKNGDIK 318
Query: 372 VLITTNVLSRGIDVEQVTLVVNFDMPMDMNRKADCETYLHRIGRTGRFGKAGIAINLIDS 431
+L+ T++ +RGID+ Q+ V+N D+P E Y+HRIGRTGR G+AG AI+L+ +
Sbjct: 319 ILVATDIAARGIDIHQLPYVINLDLP------NVAEDYVHRIGRTGRAGEAGHAISLVAA 372
Query: 432 PQAMEICTDIEAHFGKKIQLLDIEDAEE 459
+A+ + IE G + +D+ E+
Sbjct: 373 EEAL-LLKAIEKFIGNPLPKVDVVGFEQ 399
>UniRef50_A2ED04 Cluster: DEAD/DEAH box helicase family protein;
n=1; Trichomonas vaginalis G3|Rep: DEAD/DEAH box
helicase family protein - Trichomonas vaginalis G3
Length = 521
Score = 163 bits (396), Expect = 9e-39
Identities = 120/374 (32%), Positives = 194/374 (51%), Gaps = 25/374 (6%)
Query: 64 EIQRKDPNSPLYSVKTFEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMIAQ 123
+I+ N P +V TFE L+L +++ + + P+ IQ ++P L +M+
Sbjct: 72 QIKLLGENIPPVAV-TFEELNLPQEIMEVIKENNWTNPTPIQSLSIPIGLKG--NDMVGI 128
Query: 124 SQSGTGKTAAFVLAMLSRVDSNKNY-----PQVLCLSPTYELAIQTGEVAAKMAKFCPEI 178
+++G+GKTA+F++ L + + + P VL LSPT ELA+QT EVAA+ FC ++
Sbjct: 129 AKTGSGKTASFLIPALMHISAQRKISENDGPIVLVLSPTRELALQTDEVAAQ---FCVKM 185
Query: 179 KLKYAV--RGEELPRG-SKITDH--ILIGTPGKMFDWGVKFGMFDMGKIKVFVLDEADVM 233
K+ GE+ R +K+ H I+ TPG++ D+ ++ G+F+ + VLDEAD M
Sbjct: 186 GYKHVCIYGGEDRHRQINKLRFHPEIVTATPGRLIDF-LQSGVFNPNRANFLVLDEADRM 244
Query: 234 INRQGHQDQCIRIHKCLPSTCQMMFFSATYGTAVMQFAEIIVSNPIIIRLLREEESLDNI 293
++ G + Q I L + FSAT+ + Q A +SNPI + + EE + +
Sbjct: 245 LD-MGFEPQIRAIIASLTKDRETFMFSATWPKEIRQLASDFLSNPIHMHVGGEELATNER 303
Query: 294 KQYYVKCKSAEDKYRAICNIYGVITIGQAIIFCHTRKTASWLSEKMSKDGHSVAVLSGEL 353
Q V +K I + IIF T++T LS+ + + G+
Sbjct: 304 IQQNVLLLQEHEKGEKCVEILKENQSKKIIIFAKTKRTVQQLSDFLKSKSIRCLSIHGDK 363
Query: 354 TVEQRIAVLDRFR-VGLEKVLITTNVLSRGIDVEQVTLVVNFDMPMDMNRKADCETYLHR 412
T ++R+ LD+F+ VL+ T+V +RG+DV + LV+N+D P D E Y+HR
Sbjct: 364 TQQERVVALDKFKNARTGGVLVATDVAARGLDVTDIDLVLNYDFP------GDIEDYVHR 417
Query: 413 IGRTGRFGKAGIAI 426
IGRT R K G+AI
Sbjct: 418 IGRTARGEKTGVAI 431
>UniRef50_Q96GQ7 Cluster: Probable ATP-dependent RNA helicase DDX27;
n=34; Bilateria|Rep: Probable ATP-dependent RNA helicase
DDX27 - Homo sapiens (Human)
Length = 796
Score = 163 bits (396), Expect = 9e-39
Identities = 113/359 (31%), Positives = 183/359 (50%), Gaps = 18/359 (5%)
Query: 79 TFEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMIAQSQSGTGKTAAFVLAM 138
+F+ ++L LLK + AMGF P+ IQ+ +P L +++ A + +GTGKTAAF L +
Sbjct: 219 SFQDMNLSRPLLKAITAMGFKQPTPIQKACIPVGLLG--KDICACAATGTGKTAAFALPV 276
Query: 139 LSR-VDSNKNYP--QVLCLSPTYELAIQTGEVAAKMAKFCPEIKLKYAVRGEELPRGS-- 193
L R + + P +VL L PT EL IQ V ++A+FC I AV G ++
Sbjct: 277 LERLIYKPRQAPVTRVLVLVPTRELGIQVHSVTRQLAQFC-NITTCLAVGGLDVKSQEAA 335
Query: 194 -KITDHILIGTPGKMFDWGVKFGMFDMGKIKVFVLDEADVMINRQGHQDQCIRIHKCLPS 252
+ ILI TPG++ D F + I+V +LDEAD M++ ++Q I +
Sbjct: 336 LRAAPDILIATPGRLIDHLHNCPSFHLSSIEVLILDEADRMLDEY-FEEQMKEIIRMCSH 394
Query: 253 TCQMMFFSATYGTAVMQFAEIIVSNPIIIRLLREEESLDNIKQYYVKCKSAE--DKYRAI 310
Q M FSAT V A + + NP+ I + + ++Q +++ + D+ +
Sbjct: 395 HRQTMLFSATMTDEVKDLASVSLKNPVRIFVNSNTDVAPFLRQEFIRIRPNREGDREAIV 454
Query: 311 CNIYGVITIGQAIIFCHTRKTASWLSEKMSKDGHSVAVLSGELTVEQRIAVLDRFRVGLE 370
+ ++F T+K A + + G V L G L+ QR+ L RF+
Sbjct: 455 AALLTRTFTDHVMLFTQTKKQAHRMHILLGLMGLQVGELHGNLSQTQRLEALRRFKDEQI 514
Query: 371 KVLITTNVLSRGIDVEQVTLVVNFDMPMDMNRKADCETYLHRIGRTGRFGKAGIAINLI 429
+L+ T+V +RG+D+E V V+NF MP + Y+HR+GRT R G+AG +++L+
Sbjct: 515 DILVATDVAARGLDIEGVKTVINFTMPNTIKH------YVHRVGRTARAGRAGRSVSLV 567
>UniRef50_UPI00015B5D7B Cluster: PREDICTED: similar to LD28101p;
n=1; Nasonia vitripennis|Rep: PREDICTED: similar to
LD28101p - Nasonia vitripennis
Length = 782
Score = 163 bits (395), Expect = 1e-38
Identities = 105/387 (27%), Positives = 197/387 (50%), Gaps = 18/387 (4%)
Query: 80 FEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMIAQSQSGTGKTAAFVLAML 139
F+++ L ++++G+ G+ P+ IQ +P L ++++A +++G+GKTA F++ M
Sbjct: 40 FQSMGLSQSVIRGILKRGYKIPTPIQRKTIPIALDG--RDVVAMARTGSGKTACFLIPMF 97
Query: 140 SRVDSN--KNYPQVLCLSPTYELAIQTGEVAAKMAKFCPEIKLKYAVRGEELPRG-SKIT 196
++ + K + L LSPT ELA+QT ++ +F +K + G+ + S I
Sbjct: 98 EKLKTRQAKTGARALILSPTRELALQTQRFIKEIGRFTG-LKSSVILGGDSMDNQFSAIH 156
Query: 197 DH--ILIGTPGKMFDWGVKFGMFDMGKIKVFVLDEADVMINRQGHQDQCIRIHKCLPSTC 254
+ I++ TPG+ ++ M ++ I+ + DEAD + G +Q I LP
Sbjct: 157 GNPDIIVATPGRFLHICIEMDM-NLKSIEFVIFDEADRLFE-MGFGEQIHEIANRLPKNR 214
Query: 255 QMMFFSATYGTAVMQFAEIIVSNPIIIRLLREEESLDNIKQYYVKCKSAEDKYRAICNIY 314
Q + FSAT +++FA + NP+++RL E + D +K ++ C+ E +C +
Sbjct: 215 QTLLFSATLPKVLVEFATAGLRNPVLVRLDVESKLPDELKLCFITCRPEEKLAVLMCLLK 274
Query: 315 GVITIG-QAIIFCHTRKTASWLSEKMSKDGHSVAVLSGELTVEQRIAVLDRFRVGLEKVL 373
VI G Q +IF T ++ + + + G + L R +F+ G KVL
Sbjct: 275 QVIKPGAQTVIFAATMHHVEYIHQILDQAGILNTFIYSNLDPSARKINAAKFQNGKVKVL 334
Query: 374 ITTNVLSRGIDVEQVTLVVNFDMPMDMNRKADCETYLHRIGRTGRFGKAGIAINLIDSPQ 433
+ T+V +RGID+ + V+NF+ P A + ++HR+GR R G++G A N++ +P
Sbjct: 335 VVTDVAARGIDIPHLDNVINFNFP------AKSKLFIHRVGRCARAGRSGTAYNIV-APD 387
Query: 434 AMEICTDIEAHFGKKIQLLDIEDAEEI 460
D+ G+ ++ + +A+ I
Sbjct: 388 EYAYLLDLHLFLGRSFNIVPVSEAKNI 414
>UniRef50_A1USG3 Cluster: DEAD/DEAH box helicase domain/helicase
conserved C-terminal domain protein; n=2;
Rhizobiales|Rep: DEAD/DEAH box helicase domain/helicase
conserved C-terminal domain protein - Bartonella
bacilliformis (strain ATCC 35685 / KC583)
Length = 462
Score = 163 bits (395), Expect = 1e-38
Identities = 116/386 (30%), Positives = 194/386 (50%), Gaps = 21/386 (5%)
Query: 77 VKTFEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMIAQSQSGTGKTAAFVL 136
+ F+ L L ++K V G+ AP+ IQ +P +L ++++ +Q+GTGKTA+FVL
Sbjct: 5 LNNFDNLGLSAKVIKAVQLAGYTAPTPIQSETIPHVLQH--KDVLGIAQTGTGKTASFVL 62
Query: 137 AMLSRVDSNK---NYPQVLCLSPTYELAIQTGEVAAKMAKFCPEIKLKYAVRGEELPRGS 193
ML+ ++ + P+ L L PT ELA Q E K + + + G
Sbjct: 63 PMLTLLEKGRAKARMPRTLILEPTRELAAQVKENFDKYG-INHRLNVALLIGGVSFDHQD 121
Query: 194 KITDH---ILIGTPGKMFDWGVKFGMFDMGKIKVFVLDEADVMINRQGHQDQCIRIHKCL 250
+ + +LI TPG++ D + + MG +++ V+DEAD M++ G RI K
Sbjct: 122 RKLERGADVLIATPGRLLDHFERGTLLLMG-VEILVIDEADRMLD-MGFIPDIERICKLT 179
Query: 251 PSTCQMMFFSATYGTAVMQFAEIIVSNPIIIRLLREEESLDNIKQYYVKCKSAEDKYRAI 310
P T Q +FFSAT +++ E + +P+ + + +E + I Q VK S RA+
Sbjct: 180 PFTRQTLFFSATMAPEIIKLTEQFLHSPVCVEITKESSTARTITQRLVKSGSKAWHKRAV 239
Query: 311 CN--IYGVIT-IGQAIIFCHTRKTASWLSEKMSKDGHSVAVLSGELTVEQRIAVLDRFRV 367
I+ + AI+FC+ +K S L + K SV VL G++ R+ L F+
Sbjct: 240 LRKLIHDENKELKNAIVFCNRKKDISELFRSLVKYNFSVGVLHGDMDQHSRMNTLADFKE 299
Query: 368 GLEKVLITTNVLSRGIDVEQVTLVVNFDMPMDMNRKADCETYLHRIGRTGRFGKAGIAIN 427
+L+ ++V +RG+D+ V+ V N+D+P E Y+HRIGRTGR ++G A
Sbjct: 300 NKLTLLVASDVAARGLDIPDVSHVFNYDVP------THAEDYIHRIGRTGRAKRSGKAFT 353
Query: 428 LIDSPQAMEICTDIEAHFGKKIQLLD 453
++ + + + IE + I+ LD
Sbjct: 354 IV-TKNDQKYISAIEKISKENIEWLD 378
>UniRef50_A2EVI2 Cluster: DEAD/DEAH box helicase family protein;
n=1; Trichomonas vaginalis G3|Rep: DEAD/DEAH box
helicase family protein - Trichomonas vaginalis G3
Length = 598
Score = 163 bits (395), Expect = 1e-38
Identities = 112/359 (31%), Positives = 183/359 (50%), Gaps = 25/359 (6%)
Query: 79 TFEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMIAQSQSGTGKTAAFVLAM 138
TFE L+L + K + + P+ IQ ++P L ++I +++G+GKTAAF++
Sbjct: 126 TFEELNLPDTITKTITDNKWEKPTPIQSVSIPVALKG--HDLIGIAKTGSGKTAAFLIPA 183
Query: 139 LSRVDSNK-----NYPQVLCLSPTYELAIQTGEVAAKMAKFCPEIKLKYAVRGEELPRGS 193
+ + + + P VL LSPT ELA Q EVA FC + ++ RG
Sbjct: 184 MVHIGLQEPMYRGDGPIVLVLSPTRELAQQIAEVAKG---FCDNLMIRQTCLFGGAGRGP 240
Query: 194 KITD-----HILIGTPGKMFDWGVKFGMFDMGKIKVFVLDEADVMINRQGHQDQCIRIHK 248
+ D +++ TPG++ D+ ++ G M ++ VLDEAD M++ G + Q +I
Sbjct: 241 QANDLRHLPSLVVATPGRLIDF-IEGGQCPMNRVNFLVLDEADQMLD-MGFEPQIRKIIG 298
Query: 249 CLPSTCQMMFFSATYGTAVMQFAEIIVSNPIIIRLLREEESLD-NIKQYYVKCKSAEDKY 307
+ Q M FSAT+ + Q A + +P+ + + ++ + + NIKQ KC+ E K
Sbjct: 299 HISKDRQTMMFSATWPKEIQQLAADFLVDPVHMIIGNKDLTTNSNIKQVITKCEEFE-KL 357
Query: 308 RAICNIYGVITIGQAIIFCHTRKTASWLSEKMSKDGHSVAVLSGELTVEQRIAVLDRFRV 367
+ + IIF T++T L E ++ G L G+ QR VL +FR
Sbjct: 358 SKCLEVLNEHKDDKIIIFTKTKRTTDDLQENLNMKGFQAYSLHGDKAQNQRDFVLGKFRS 417
Query: 368 GLEKVLITTNVLSRGIDVEQVTLVVNFDMPMDMNRKADCETYLHRIGRTGRFGKAGIAI 426
+ +L+ T+V +RG+DV + +V+N+D P D ETY+HRIGRT R K G+A+
Sbjct: 418 CKKGILVATDVAARGLDVNDIDIVINYDFP------GDIETYVHRIGRTARGNKEGLAV 470
>UniRef50_UPI00003C8469 Cluster: hypothetical protein Faci_03001730;
n=1; Ferroplasma acidarmanus fer1|Rep: hypothetical
protein Faci_03001730 - Ferroplasma acidarmanus fer1
Length = 430
Score = 162 bits (394), Expect = 2e-38
Identities = 114/377 (30%), Positives = 194/377 (51%), Gaps = 18/377 (4%)
Query: 83 LHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMIAQSQSGTGKTAAFVLAMLSRV 142
+ + NL K + M F P++IQE A+P +L +++I +S++G+GKTAA++L +L+ V
Sbjct: 1 MDISENLKKSLGLMKFTEPTEIQEKAIPVVLTG--KDVIIRSKTGSGKTAAYLLPVLNSV 58
Query: 143 DSNKNYP-QVLCLSPTYELAIQTGEVAAKMAKFCPEIKLKYAVRGEELPRGSKIT--DHI 199
+ K + + + PT ELA+QT VA+++ K IK G + R + I
Sbjct: 59 EKLKGKSVKAIIILPTRELALQTHRVASRLGKISG-IKSTIVYGGASIIRQVEELPGSDI 117
Query: 200 LIGTPGKMFD-WGVKFGMFDMGKIKVFVLDEADVMINRQGHQDQCIRIHKCLPSTCQMMF 258
+IGTPG++ D + K+ D +K VLDEAD+M++ G D +I P Q +
Sbjct: 118 VIGTPGRILDLYNQKYLKLD--HVKYLVLDEADLMLD-MGFIDDIKKIISFTPEGRQTIL 174
Query: 259 FSATYGTAVMQFAEIIVSNPIIIRLLREEESLDNIKQYYVKCKSAEDKYRAICNIYGVIT 318
SAT V A ++NP + +E +IK Y + DK+ + +
Sbjct: 175 LSATLPAEVKTIANHFMNNPEFVDAGGDEAIPSSIKHLYTVSEKF-DKFSTLMSYIHSYN 233
Query: 319 IGQAIIFCHTRKTASWLSEKMSKDGHSVAVLSGELTVEQRIAVLDRFRVGLEKVLITTNV 378
+AI+F T+++ L+ +S+ G + ++ G + R + FR +L+ TNV
Sbjct: 234 SRKAIVFVKTQRSGDLLNLILSRSGFNNVLIHGGMKQHARERSIADFRHIDSGILVATNV 293
Query: 379 LSRGIDVEQVTLVVNFDMPMDMNRKADCETYLHRIGRTGRFGKAGIAINLIDSPQAMEIC 438
+RG+D+ +T ++NFD P ETY HR+GR+GR GK G A+ + D P +
Sbjct: 294 AARGLDIPNITDIINFDAP------DSTETYAHRVGRSGRMGKDGRAMTIFD-PSQKSLI 346
Query: 439 TDIEAHFGKKIQLLDIE 455
I+ K++ ++I+
Sbjct: 347 QSIQRRNRIKMEKINID 363
>UniRef50_A6TX49 Cluster: DEAD/DEAH box helicase domain protein;
n=2; Firmicutes|Rep: DEAD/DEAH box helicase domain
protein - Alkaliphilus metalliredigens QYMF
Length = 387
Score = 162 bits (394), Expect = 2e-38
Identities = 107/354 (30%), Positives = 187/354 (52%), Gaps = 19/354 (5%)
Query: 83 LHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMIAQSQSGTGKTAAFVLAMLSRV 142
L +KP L + +GF AP+ IQE A+P +L +++IA+S +GTGKT A+++ +L R+
Sbjct: 15 LKMKPFLQETWNRVGFTAPTPIQEEAIPLILEG--KDLIAESPTGTGKTLAYLIPILHRI 72
Query: 143 DSNKNYPQVLCLSPTYELAIQTGEVAAKMAKFCPEIKLKYAVRGEELPR---GSKITDHI 199
D Q + L+P++ELA+Q + K K I + + G + R K I
Sbjct: 73 DPESKAVQAVILAPSHELAMQIHQTIEKWTKD-NNISSEPLIGGANIKRQIENLKKRPQI 131
Query: 200 LIGTPGKMFDWGVKFGMFDMGKIKVFVLDEADVMINRQGHQDQCIRIHKCLPSTCQMMFF 259
++ T G++ + +K M ++K V+DE D++I + H + I K Q++ F
Sbjct: 132 IVATTGRLLEV-IKLKKIKMHEVKTIVVDEFDILIAEE-HAENLKHIIKTTLKERQIVCF 189
Query: 260 SATYGTAVMQFAEIIVSNPIIIRLLREEESLD---NIKQYYVKCKSAEDKYRAICNIYGV 316
SAT Q ++ P II++ + + SL NI+ Y+ C+ E K+ + I
Sbjct: 190 SATISENTEQIGMELMKEPKIIQIQKGQSSLSTLSNIQHTYIICEHRE-KFEVLRKIIRS 248
Query: 317 ITIGQAIIFCHTRKTASWLSEKMSKDGHSVAVLSGELTVEQRIAVLDRFRVGLEKVLITT 376
+ +A++F + + + K+S +G + VL G QR L+ FR+G +L+ T
Sbjct: 249 GNV-KALVFTNDVRKIEEIQVKLSYNGIDLGVLMGGSNKTQRKEALNGFRMGKFPLLVAT 307
Query: 377 NVLSRGIDVEQVTLVVNFDMPMDMNRKADCETYLHRIGRTGRFGKAGIAINLID 430
+V +RG+D+E +T V+N+D+P+ + Y HR GRTGR G G +++++
Sbjct: 308 DVAARGLDIEGLTHVINWDVPL------TADQYTHRSGRTGRMGALGTVVSIVN 355
>UniRef50_UPI0000585111 Cluster: PREDICTED: hypothetical protein;
n=1; Strongylocentrotus purpuratus|Rep: PREDICTED:
hypothetical protein - Strongylocentrotus purpuratus
Length = 1117
Score = 162 bits (393), Expect = 2e-38
Identities = 106/336 (31%), Positives = 175/336 (52%), Gaps = 17/336 (5%)
Query: 116 PPQNMIAQSQSGTGKTAAFVLAMLSRVDSNKNYPQVLCLSPTYELAIQTGEVAAKMAKFC 175
P Q++I Q++SGTGKT F + L +D QVL L+PT E+A+Q + +
Sbjct: 2 PVQDLIVQAKSGTGKTCVFSVIALEGIDLTNPSTQVLILAPTREIAVQIQDTIRAIGCEM 61
Query: 176 PEIKLKYAVRGEEL-PRGSKITD-HILIGTPGKMFDWGVKFGMFDMGKIKVFVLDEADVM 233
++ + G P K+ HI +GTPG++ +++ + G I++FVLDEAD +
Sbjct: 62 EGLRSHVFIGGTLFGPDRQKLKKCHIAVGTPGRIKQL-IEYEVLKTGTIRLFVLDEADKL 120
Query: 234 INRQGHQDQCIRIHKCLPSTCQMMFFSATYGTAVMQFAEIIVSNPIIIRLLREEESLDNI 293
++ Q+Q I+ L QM+ SATY + + + P+ +RL ++ +L I
Sbjct: 121 LD-DTFQEQVNWIYNHLSDNKQMLALSATYPEYLAKHLTKYMREPMFVRLNPKDLALRGI 179
Query: 294 KQYYVKC-------KSAEDKYRAICNIYGVITIGQAIIFCHTRKTASWLSEKMSKDGHSV 346
KQ YV+ K+ E K + I ++ Q +IF + + A L + + G
Sbjct: 180 KQLYVELPGHSLPNKAFEIKVIKLLKILTQVSFNQCLIFSNLQTRAQNLCDILCDSGWPS 239
Query: 347 AVLSGELTVEQRIAVLDRFRVGLEKVLITTNVLSRGIDVEQVTLVVNFDMPMDMNRKADC 406
+SG QR++ + + + ++LI+T++ +RGID E V L++N D+P D
Sbjct: 240 ECISGAQEQSQRLSAMAKLKKFQCRILISTDLTARGIDAENVNLIINLDIP------TDT 293
Query: 407 ETYLHRIGRTGRFGKAGIAINLIDSPQAMEICTDIE 442
+TYLHRIGR GRFG G AI+L + ME+ +I+
Sbjct: 294 KTYLHRIGRAGRFGTHGAAISLASKGREMELLRNIQ 329
>UniRef50_Q12QV2 Cluster: DEAD/DEAH box helicase-like protein; n=16;
Gammaproteobacteria|Rep: DEAD/DEAH box helicase-like
protein - Shewanella denitrificans (strain OS217 / ATCC
BAA-1090 / DSM 15013)
Length = 433
Score = 162 bits (393), Expect = 2e-38
Identities = 115/390 (29%), Positives = 193/390 (49%), Gaps = 27/390 (6%)
Query: 80 FEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMIAQSQSGTGKTAAFVLAML 139
FE+ P +L+ + G+ + +Q+ A+P + ++++A +Q+GTGKTAAF L +L
Sbjct: 3 FESFSFAPEILRAIAECGYQNMTPVQQQAIPAIRRG--EDVLASAQTGTGKTAAFALPIL 60
Query: 140 SRVDSNKNYPQ-----VLCLSPTYELAIQTGEVAAKMAKFCPEIKL------KYAVRGEE 188
++ Q L L+PT ELA Q + + +K L K A + ++
Sbjct: 61 QKMHERPMTVQHSNARALILTPTRELAAQVADNISAYSKHMNISVLTIYGGMKMATQAQK 120
Query: 189 LPRGSKITDHILIGTPGKMFDWGVKFGMFDMGKIKVFVLDEADVMINRQGHQDQCIRIHK 248
L +G+ I ++ TPG++ + V + + ++ VLDEAD M++ G +I +
Sbjct: 121 LKQGADI----IVATPGRLLEHIVACNL-SLSNVEFLVLDEADRMLD-MGFSTDIQKILQ 174
Query: 249 CLPSTCQMMFFSATYGTAVMQFAEIIVSNPIIIRLLREEESLDNIKQYYVKCKSAEDKYR 308
+ Q + FSAT+ TAV + A ++ P II ++ + + Q + K
Sbjct: 175 AVNKKRQNLLFSATFSTAVKKLANDMLDKPKIISADKQNTTAATVSQVVYPVEQRR-KRE 233
Query: 309 AICNIYGVITIGQAIIFCHTRKTASWLSEKMSKDGHSVAVLSGELTVEQRIAVLDRFRVG 368
+ + G Q ++F TR A L +++ DG AV+ GE R L F G
Sbjct: 234 LLSELIGTKNWQQVLVFTATRADADKLVTELNLDGIPSAVVHGEKAQGSRRRALREFIEG 293
Query: 369 LEKVLITTNVLSRGIDVEQVTLVVNFDMPMDMNRKADCETYLHRIGRTGRFGKAGIAINL 428
+VL+ T V +RG+D++ + VVN+D+P E Y+HRIGRTGR GK G+AI+
Sbjct: 294 KVRVLVATEVAARGLDIQGLEYVVNYDLPF------LAEDYVHRIGRTGRAGKTGVAISF 347
Query: 429 IDSPQAMEICTDIEAHFGKKIQLLDIEDAE 458
+ S + DIE G+KI+ + + E
Sbjct: 348 V-SREEERTLADIEKLIGQKIRRITVPGYE 376
>UniRef50_Q0HKH0 Cluster: DEAD/DEAH box helicase domain protein;
n=37; Gammaproteobacteria|Rep: DEAD/DEAH box helicase
domain protein - Shewanella sp. (strain MR-4)
Length = 427
Score = 162 bits (393), Expect = 2e-38
Identities = 115/364 (31%), Positives = 194/364 (53%), Gaps = 23/364 (6%)
Query: 76 SVKTFEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMIAQSQSGTGKTAAFV 135
SV +F L + L + + + AP+ IQ +P +L+ ++++A + +G+GKTAAF
Sbjct: 7 SVASFAELGIIAPLCNRLTELTYAAPTPIQAATIPAVLSG--RDVLAGANTGSGKTAAFA 64
Query: 136 LAMLSRV----DSNKNYPQVLCLS--PTYELAIQTGEVAAKMAK-FCPEIKLKYAVRGEE 188
+ +L R+ + K+ QV CL PT ELA Q + A F ++K+ A G
Sbjct: 65 VPLLQRLFEAKTAEKSAGQVRCLVLVPTRELAQQVADSFLSYASHFNGQLKIVAAFGGVS 124
Query: 189 LP---RGSKITDHILIGTPGKMFDWGVKFGMFDMGKIKVFVLDEADVMINRQGHQDQCIR 245
+ + + +L+ TPG++ D + + ++ VLDEAD M++ G D+ +
Sbjct: 125 VNLQMQSLRAGADVLVATPGRLLDL-LASNALKLNRVLALVLDEADRMLSL-GFTDELNQ 182
Query: 246 IHKCLPSTCQMMFFSATYGTAVMQFAEIIVSNPIIIRLLREEESLDNIKQYYVKCKSAED 305
+ + LP+ Q + +SAT+ V ++ P+ L E+ES I+Q + + E
Sbjct: 183 VLEALPAKKQTLLYSATFPEEVRALTAKLLHQPLEYHLQSEQES--TIEQRVITV-NREQ 239
Query: 306 KYRAICNIYGVITIGQAIIFCHTRKTASWLSEKMSKDGHSVAVLSGELTVEQRIAVLDRF 365
K + ++ QA+IF + T + L++K+SK G S V G+ R VLD F
Sbjct: 240 KTALLAHLIKQHQWSQALIFVSAKNTCNHLAQKLSKRGISAEVFHGDKAQGARTRVLDGF 299
Query: 366 RVGLEKVLITTNVLSRGIDVEQVTLVVNFDMPMDMNRKADCETYLHRIGRTGRFGKAGIA 425
+ G VLI T++ +RGID++++ +V+NFD+P AD Y+HRIGR+GR G+AG+A
Sbjct: 300 KSGDISVLIATDIAARGIDIDKLPVVINFDLP---RSPAD---YMHRIGRSGRAGEAGLA 353
Query: 426 INLI 429
+ LI
Sbjct: 354 VTLI 357
>UniRef50_Q1I3W1 Cluster: ATP-dependent RNA helicase RhlE, DEAD box
family; n=21; Pseudomonadaceae|Rep: ATP-dependent RNA
helicase RhlE, DEAD box family - Pseudomonas entomophila
(strain L48)
Length = 634
Score = 161 bits (392), Expect = 3e-38
Identities = 118/401 (29%), Positives = 214/401 (53%), Gaps = 34/401 (8%)
Query: 79 TFEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMIAQSQSGTGKTAAFVLAM 138
+F +L L L++ + A G+ P+ +Q+ A+P +L ++++ +Q+GTGKT F L +
Sbjct: 2 SFASLGLSEALVRAIEAAGYTQPTPVQQRAIPAVLQG--RDLMVAAQTGTGKTGGFALPI 59
Query: 139 LSRV------DSNKNY----PQVLCLSPTYELAIQTGE---VAAKMAKFCPEIKLKYAVR 185
L R+ D ++ + P+VL L+PT ELA Q + V A+ F
Sbjct: 60 LERLFPGGHPDKSQRHGPRQPRVLVLTPTRELAAQVHDSFKVYARDLNFISACIFGGVGM 119
Query: 186 GEELPRGSKITDHILIGTPGKMFDWGVKFGMFDMGKIKVFVLDEADVMINRQGHQDQCIR 245
++ +K D +L+ PG++ D + G D+ ++++ VLDEAD M++ G +
Sbjct: 120 NPQVQAMAKGVD-VLVACPGRLLDLAGQ-GSVDLSRVEILVLDEADRMLD-MGFIHDVKK 176
Query: 246 IHKCLPSTCQMMFFSATYGTAVMQFAEIIVSNPIIIRLLREEESLDNIKQYYVKCKSAED 305
+ LP+ Q + FSAT+ + A+ ++ NP I + +++ I+Q + ++
Sbjct: 177 VLARLPAKRQNLLFSATFSKDITDLADKLLHNPERIEVTPPNTTVERIEQRVYRLPASHK 236
Query: 306 KYRAICNIYGVITIG---QAIIFCHTRKTASWLSEKMSKDGHSVAVLSGELTVEQRIAVL 362
RA+ + +IT+G Q ++F T+ A+ L+E + K G + A + G + R L
Sbjct: 237 --RAL--LAHLITLGAWEQVLVFTRTKHGANRLAEYLEKHGLTAAAIHGNKSQNARTKAL 292
Query: 363 DRFRVGLEKVLITTNVLSRGIDVEQVTLVVNFDMPMDMNRKADCETYLHRIGRTGRFGKA 422
F+ +VL+ T++ +RG+D++Q+ VVNF++P N + D Y+HRIGRTGR G++
Sbjct: 293 ADFKANTVRVLVATDIAARGLDIDQLPHVVNFELP---NVEED---YVHRIGRTGRAGRS 346
Query: 423 GIAINLIDSPQAMEICTDIEAHFGKKIQLLDIE--DAEEIE 461
G AI+++ +P ++ IE +KI D+ DA +E
Sbjct: 347 GEAISMV-APDEEKLLKSIERVTKQKIPDGDLMGFDASTVE 386
>UniRef50_Q4FSS4 Cluster: Possible ATP-dependent DEAD/DEAH box
RNA-helicase; n=4; Gammaproteobacteria|Rep: Possible
ATP-dependent DEAD/DEAH box RNA-helicase - Psychrobacter
arcticum
Length = 567
Score = 161 bits (391), Expect = 4e-38
Identities = 114/388 (29%), Positives = 196/388 (50%), Gaps = 24/388 (6%)
Query: 79 TFEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMIAQSQSGTGKTAAFVLAM 138
TF L++ +L + G+ P+ IQ A+P L ++++ +Q+G+GKTAAFV+ +
Sbjct: 45 TFTDLNIAKPILSALERSGYTHPTPIQAEAIPFALQG--RDLLLSAQTGSGKTAAFVIPV 102
Query: 139 LSRVDSNKNYPQV---LCLSPTYELAIQTGEVAAKMAKFCPEIKLKYAVRGEELPRGSKI 195
L R+ ++ ++ L L+PT ELA Q + +K + V G P +I
Sbjct: 103 LDRLSRATSFDKLTKALILTPTRELAQQVHDSVRTYSKDMRGLFCVPLVGGA--PYNGQI 160
Query: 196 TD-----HILIGTPGKMFDWGVKFGMFDMGKIKVFVLDEADVMINRQGHQDQCIRIHKCL 250
T +++ TPG++ D + G D+ +++ VLDEAD M++ G D I +
Sbjct: 161 TALKKGVQVIVATPGRLLDH-INAGRVDLSSLEILVLDEADRMLD-MGFADDISDILRAA 218
Query: 251 PSTCQMMFFSATYGTAVMQFAEIIVSNPIIIRLLREEESLDNIKQYYVKCKSAEDKYRAI 310
P Q + SAT+ V + A NP + + E ++ K YY C + K R +
Sbjct: 219 PIDRQTIMCSATWDGPVGKIAASFTKNPERVSIKVESAHIEE-KVYY--CDDFDHKNRLL 275
Query: 311 CNIYGVITIGQAIIFCHTRKTASWLSEKMSKDGHSVAVLSGELTVEQRIAVLDRFRVGLE 370
I + Q IIF T+++ L++++ + GH + L G+L +R ++ R G
Sbjct: 276 DKIVCHKDMEQIIIFAATKRSTEKLAKQLQEAGHKASFLHGDLPQSKRNRIVQDLRNGKC 335
Query: 371 KVLITTNVLSRGIDVEQVTLVVNFDMPMDMNRKADCETYLHRIGRTGRFGKAGIAINLID 430
K+L+ T+V +RG+DV ++ V+N+D+P E Y+HRIGR GR G+ G+AI+L
Sbjct: 336 KILVATDVAARGLDVPALSHVINYDLP------RQTEDYVHRIGRCGRAGRTGVAISLCS 389
Query: 431 SPQAMEICTDIEAHFGKKIQLLDIEDAE 458
++ I + +K++ IE E
Sbjct: 390 MDDRPQL-NAINRYLDRKMEASVIEGME 416
>UniRef50_A3I1F5 Cluster: DEAD/DEAH box helicase-like protein; n=1;
Algoriphagus sp. PR1|Rep: DEAD/DEAH box helicase-like
protein - Algoriphagus sp. PR1
Length = 399
Score = 161 bits (391), Expect = 4e-38
Identities = 101/380 (26%), Positives = 199/380 (52%), Gaps = 18/380 (4%)
Query: 58 ESKLD--IEIQRKDPNSP--LYSVKTFEALHLKPNLLKGVYAMGFNAPSKIQETALPTLL 113
ES LD + +++ P+ S +F +L L +++ + G+ + IQE ++ LL
Sbjct: 31 ESTLDPNLLVKKAKPSGQEGFQSKTSFASLSLDSVMMRNLSEKGYENMTNIQEQSIEALL 90
Query: 114 ADPPQNMIAQSQSGTGKTAAFVLAMLSRVDSNKNYPQVLCLSPTYELAIQTGEVAAKMAK 173
++++ S +G+GKT AF++ ++ N L ++PT ELA+Q + ++K
Sbjct: 91 EG--RDLLGISNTGSGKTGAFLIPIIEHALKNPGQFTALIVTPTRELALQIDQEFKSLSK 148
Query: 174 FCPEIKLKYAVRGEELPRGSKITD---HILIGTPGKMFDWGVKFGMFDMGKIKVFVLDEA 230
+ + G + K+ H+++GTPG++ D + + + ++K VLDE
Sbjct: 149 GM-RLHSATFIGGTNINTDMKVLSRKLHVIVGTPGRLLDLTNR-KLLKLNQVKTLVLDEF 206
Query: 231 DVMINRQGHQDQCIRIHKCLPSTCQMMFFSATYGTAVMQFAEIIVSNPIIIRLLREEESL 290
D M++ G + ++ + Q M FSAT + ++ NP+ +++ +
Sbjct: 207 DRMLD-MGFVNDVKKLVGGMTQREQTMLFSATLEPNQKNLIQSLLKNPVEVKINTGVSTN 265
Query: 291 DNIKQYYVKCKSAEDKYRAICNIYGVITIGQAIIFCHTRKTASWLSEKMSKDGHSVAVLS 350
+NI+Q ++ +DK+ + +++ + + I+F T++ A LS+K+++ G ++
Sbjct: 266 ENIEQGIIRVPEGKDKFGMLADLFQNRAMDKVIVFTETKRLADRLSKKLNQAGVKSGLIH 325
Query: 351 GELTVEQRIAVLDRFRVGLEKVLITTNVLSRGIDVEQVTLVVNFDMPMDMNRKADCETYL 410
G + R +++F+ G +VL+ T+V +RGIDV V+ V+N+ +PM M ++Y+
Sbjct: 326 GNKSQNFRNKTIEQFKSGETRVLVATDVAARGIDVADVSHVINYQLPMTM------DSYI 379
Query: 411 HRIGRTGRFGKAGIAINLID 430
HRIGRTGR GK G AI ++
Sbjct: 380 HRIGRTGRAGKTGHAITFVN 399
>UniRef50_A0KTC9 Cluster: DEAD/DEAH box helicase domain protein;
n=132; Bacteria|Rep: DEAD/DEAH box helicase domain
protein - Shewanella sp. (strain ANA-3)
Length = 578
Score = 161 bits (391), Expect = 4e-38
Identities = 114/384 (29%), Positives = 199/384 (51%), Gaps = 20/384 (5%)
Query: 79 TFEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMIAQSQSGTGKTAAFVLAM 138
+F +L L + K V G++ PS IQ A+P +L ++++A +Q+GTGKTA F L +
Sbjct: 2 SFSSLGLSAPIQKAVTEQGYDTPSPIQAQAIPAVLTG--KDVMAAAQTGTGKTAGFTLPL 59
Query: 139 LSRVDS-NK---NYPQVLCLSPTYELAIQTGEVAAKMAKFCPEIKLKYAVRGEEL-PRGS 193
L + NK + L L+PT ELA Q E K+ P ++ G + P+
Sbjct: 60 LELLSKGNKAKAGQIRALVLTPTRELAAQVSESVETYGKYLP-LRSAVVFGGVPINPQIQ 118
Query: 194 KITD--HILIGTPGKMFDWGVKFGMFDMGKIKVFVLDEADVMINRQGHQDQCIRIHKCLP 251
K+ +L+ TPG++ D + + +++V VLDEAD M++ G +I LP
Sbjct: 119 KLRHGVDVLVATPGRLLDLEQQKAV-KFNQLEVLVLDEADRMLD-MGFIRDIKKILAMLP 176
Query: 252 STCQMMFFSATYGTAVMQFAEIIVSNPIIIRLLREEESLDNIKQYYVKCKSAEDKYRAIC 311
+ Q + FSAT+ + + A+ +V+ P+ I + + + +KQ+ + K +
Sbjct: 177 AKRQNLMFSATFSDEIRELAKGLVNQPVEISVTPRNAAANTVKQWICPVDKNQ-KSALLI 235
Query: 312 NIYGVITIGQAIIFCHTRKTASWLSEKMSKDGHSVAVLSGELTVEQRIAVLDRFRVGLEK 371
+ Q ++F T+ A+ L++ + + S A + G + R L F+ G +
Sbjct: 236 QLIKQEDWQQVLVFSRTKHGANRLAKSLIQAEISAAAIHGNKSQGARTKALADFKSGEVR 295
Query: 372 VLITTNVLSRGIDVEQVTLVVNFDMPMDMNRKADCETYLHRIGRTGRFGKAGIAINLIDS 431
VL+ T++ +RG+D++Q+ VVNFD+P N D Y+HRIGRTGR G G A++L+ S
Sbjct: 296 VLVATDIAARGLDIDQLPQVVNFDLP---NVPED---YVHRIGRTGRAGALGQAVSLVSS 349
Query: 432 PQAMEICTDIEAHFGKKIQLLDIE 455
+ ++ DIE + ++ ++E
Sbjct: 350 EET-KLLRDIERLINRVLERQEVE 372
>UniRef50_Q5T1V6 Cluster: Probable ATP-dependent RNA helicase DDX59;
n=34; Euteleostomi|Rep: Probable ATP-dependent RNA
helicase DDX59 - Homo sapiens (Human)
Length = 619
Score = 161 bits (391), Expect = 4e-38
Identities = 119/383 (31%), Positives = 200/383 (52%), Gaps = 24/383 (6%)
Query: 57 VESKLDIEIQRKDPNSPLYSVKTFEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLADP 116
++ +L I +Q ++ P+ FE L L + G+ P+ IQ +P L
Sbjct: 185 LKQQLGILVQGQEVTRPIID---FEHCSLPEVLNHNLKKSGYEVPTPIQMQMIPVGLLG- 240
Query: 117 PQNMIAQSQSGTGKTAAFVLAMLSRVDSNKNYPQVLCLSPTYELAIQTGEVAAKMAKFCP 176
++++A + +G+GKTAAF+L ++ R P L L+PT ELAIQ A ++ P
Sbjct: 241 -RDILASADTGSGKTAAFLLPVIMRALFESKTPSALILTPTRELAIQIERQAKELMSGLP 299
Query: 177 EIKLKYAVRGEEL-PRGSKITDH--ILIGTPGKMFDWGVKFGMFDMGKIKVFVLDEADVM 233
+K V G L P+ ++ H ++I TPG++ D +K ++ +K+ V+DEAD M
Sbjct: 300 RMKTVLLVGGLPLPPQLYRLQQHVKVIIATPGRLLDI-IKQSSVELCGVKIVVVDEADTM 358
Query: 234 INRQGHQDQCIRIHKCLPSTCQMMFFSATYGTAVMQFAEIIVSNPIIIRLLREEESLD-- 291
+ + G Q Q + I + +P+ CQ + SAT T++ Q A ++ NP +R++ E++L
Sbjct: 359 L-KMGFQQQVLDILENIPNDCQTILVSATIPTSIEQLASQLLHNP--VRIITGEKNLPCA 415
Query: 292 NIKQ--YYVKCKSAEDKYRAICNIYGVITIGQAIIFCHTRKTASWLSEKMSK-DGHSVAV 348
N++Q +V+ + + K I N + ++F + A LSE + K G
Sbjct: 416 NVRQIILWVEDPAKKKKLFEILNDKKLFK-PPVLVFVDCKLGADLLSEAVQKITGLKSIS 474
Query: 349 LSGELTVEQRIAVLDRFRVGLEKVLITTNVLSRGIDVEQVTLVVNFDMPMDMNRKADCET 408
+ E + +R +L G +V+++T VL RG+D+ V LVVNFDMP M +
Sbjct: 475 IHSEKSQIERKNILKGLLEGDYEVVVSTGVLGRGLDLISVRLVVNFDMPSSM------DE 528
Query: 409 YLHRIGRTGRFGKAGIAINLIDS 431
Y+H+IGR GR G+ G AI I++
Sbjct: 529 YVHQIGRVGRLGQNGTAITFINN 551
>UniRef50_UPI0000D55AB0 Cluster: PREDICTED: similar to Probable
ATP-dependent RNA helicase DDX20 (DEAD box protein 20)
(DEAD box protein DP 103) (Component of gems 3)
(Gemin-3) (Regulator of steroidogenic factor 1)
(ROSF-1); n=1; Tribolium castaneum|Rep: PREDICTED:
similar to Probable ATP-dependent RNA helicase DDX20
(DEAD box protein 20) (DEAD box protein DP 103)
(Component of gems 3) (Gemin-3) (Regulator of
steroidogenic factor 1) (ROSF-1) - Tribolium castaneum
Length = 688
Score = 161 bits (390), Expect = 5e-38
Identities = 109/386 (28%), Positives = 190/386 (49%), Gaps = 20/386 (5%)
Query: 62 DIEIQRKDPNSPLYSVKTFEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMI 121
D++ + + + L +F +L L ++ +G+ GF PS IQ A+P L ++I
Sbjct: 8 DLDAKERTKDVILDENISFASLLLPDDIKQGLSVSGFKKPSPIQFKAIP--LGRCGFDLI 65
Query: 122 AQSQSGTGKTAAFVLAMLSRVDSNKNYPQVLCLSPTYELAIQTGEVAAKMAKFCPEIKLK 181
+S+SGTGKT F L V++ K++ QVL L PT E+A+Q +V + +K++
Sbjct: 66 VKSKSGTGKTLVFSTIALETVNTAKDHLQVLILVPTREIAVQIEDVLRSVGCHVNGLKIE 125
Query: 182 YAVRGEELPRGSKITD--HILIGTPGKMFDWGVKFGMFDMGKIKVFVLDEADVMINRQGH 239
+ G L K + HI +G PG++ +K G +K+FVLDEAD ++ +
Sbjct: 126 SFIGGRPLEDDLKKSSKCHIAVGAPGRVKHL-LKMGALTTNLVKLFVLDEADKLME-ESF 183
Query: 240 QDQCIRIHKCLPSTCQMMFFSATYGTAVMQFAEIIVSNPIIIRLLREEESLDNIKQYYVK 299
Q I+ LP QM+ SATY + F + +P + E L +KQ+
Sbjct: 184 QSDINEIYNSLPPRKQMIVSSATYPQELDTFLANYMQSPTHVTSENETPLLLGLKQFAAM 243
Query: 300 CKSAED-------KYRAICNIYGVITIGQAIIFCHTRKTASWLSEKMSKDGHSVAVLSGE 352
+ + K + I ++ Q ++F + + +S +++ G +S
Sbjct: 244 LRPGLNSVQQMKIKNDLLITILTKVSFVQCLVFTNYQSRTETVSNYLNQKGWDSVFISAA 303
Query: 353 LTVEQRIAVLDRFRVGLEKVLITTNVLSRGIDVEQVTLVVNFDMPMDMNRKADCETYLHR 412
+R+ +D + ++L++T++ SRGID V LV+N+D+P D TYLHR
Sbjct: 304 QKQTERLEAIDNLKKFKNRILLSTDLTSRGIDAPNVDLVINYDLP------CDAVTYLHR 357
Query: 413 IGRTGRFGKAGIAINLI-DSPQAMEI 437
+GR GR+G G+ IN + + P+ ++
Sbjct: 358 MGRAGRYGSGGLCINFVSEGPEVTKL 383
>UniRef50_Q8YH70 Cluster: ATP-DEPENDENT RNA HELICASE RHLE; n=10;
Rhizobiales|Rep: ATP-DEPENDENT RNA HELICASE RHLE -
Brucella melitensis
Length = 535
Score = 161 bits (390), Expect = 5e-38
Identities = 116/359 (32%), Positives = 188/359 (52%), Gaps = 20/359 (5%)
Query: 80 FEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMIAQSQSGTGKTAAFVLAML 139
F AL + LLKGV A G P IQ A+P+ L Q+++ +Q+G+GKTAAF L +L
Sbjct: 89 FAALGITGVLLKGVEAAGMTEPKPIQTQAIPSQLEG--QDILGIAQTGSGKTAAFSLPIL 146
Query: 140 SRVDS--NKNYPQV---LCLSPTYELAIQTGEVAAKMAKFCPEIKLKYAVRG-EELPRGS 193
++ +K P+ L L+PT ELA+Q + ++K I + G +L +
Sbjct: 147 QKIIGLGDKRRPKTARALILAPTRELAVQIEQTIRNVSKSA-HISTALVLGGVSKLSQIK 205
Query: 194 KITDHI--LIGTPGKMFDWGVKFGMFDMGKIKVFVLDEADVMINRQGHQDQCIRIHKCLP 251
+I I LI TPG++ D ++ G+ D+ + + VLDEAD M++ G + RI K
Sbjct: 206 RIAPGIDVLIATPGRLTDL-MRDGLVDLSQTRWLVLDEADRMLD-MGFINDVKRIAKATH 263
Query: 252 STCQMMFFSATYGTAVMQFAEIIVSNPIIIRLLREEESLDNIKQYYVKCKSAEDKYRAIC 311
+ Q FSAT + AE ++ +P+ + + + + I Q V ++K R +
Sbjct: 264 AERQTALFSATMPKEIASLAERLLRDPVRVEVAPQGATASEITQV-VHPVPTKEKRRLLS 322
Query: 312 NIYGVITIGQAIIFCHTRKTASWLSEKMSKDGHSVAVLSGELTVEQRIAVLDRFRVGLEK 371
+ + I+F T+ A + + +D + VA + G + R L+ FR G +
Sbjct: 323 AMLTDADMRSVIVFTRTKHGADAVVRHLERDRYDVAAIHGNKSQNARQRALNGFRDGTLR 382
Query: 372 VLITTNVLSRGIDVEQVTLVVNFDMPMDMNRKADCETYLHRIGRTGRFGKAGIAINLID 430
+L+ T++ +RGIDV ++ VVN+D+P + ETY+HRIGRTGR G +G +I L D
Sbjct: 383 ILVATDIAARGIDVPGISHVVNYDLP------DEPETYVHRIGRTGRNGASGASITLYD 435
>UniRef50_Q5NML9 Cluster: DNA and RNA helicase; n=28;
Alphaproteobacteria|Rep: DNA and RNA helicase -
Zymomonas mobilis
Length = 458
Score = 161 bits (390), Expect = 5e-38
Identities = 114/392 (29%), Positives = 198/392 (50%), Gaps = 20/392 (5%)
Query: 79 TFEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMIAQSQSGTGKTAAFVLAM 138
+F+ L L +L++ + +G++ P+ IQ A+P LL +++ +Q+GTGKTAAF L
Sbjct: 7 SFKTLGLDSSLVQALDGLGYSKPTPIQAQAIPHLLEG--KDLCGIAQTGTGKTAAFALPS 64
Query: 139 LSRVDSNKNY-PQ----VLCLSPTYELAIQTGEVAAKMAKFCPEIKLKYAVRGEELPRGS 193
+ + +N PQ +L LSPT ELA Q + + + G + R
Sbjct: 65 IHYLATNPQARPQRGCRMLILSPTRELASQIARACNDYTRHL-RMSVNAVFGGVPIGRQM 123
Query: 194 KITDH---ILIGTPGKMFDWGVKFGMFDMGKIKVFVLDEADVMINRQGHQDQCIRIHKCL 250
++ D IL+ TPG++ D + + ++VFVLDEAD M++ G RI K L
Sbjct: 124 RMLDRGTDILVATPGRLLDL-IDQRALVLKDVEVFVLDEADQMLDL-GFIHALRRIDKLL 181
Query: 251 PSTCQMMFFSATYGTAVMQFAEIIVSNPIIIRLLREEESLDNIKQYYVKCKSAEDKYRAI 310
P Q +FFSAT + + + +S+P+ + + + + + ++Q+ + +E +
Sbjct: 182 PKNRQTLFFSATMPKTIQELSSQFLSDPVTVSVAPQSSTAERVEQFGIFVNQSEKQALLT 241
Query: 311 CNIYGVITIGQAIIFCHTRKTASWLSEKMSKDGHSVAVLSGELTVEQRIAVLDRFRVGLE 370
+ + +A++F T+ A + + G A + G + QR L+ FR G
Sbjct: 242 ITLKNTPGLDRALVFTRTKHGADRVVRHLEAAGLPAAAIHGNKSQPQRERALNAFRNGRL 301
Query: 371 KVLITTNVLSRGIDVEQVTLVVNFDMPMDMNRKADCETYLHRIGRTGRFGKAGIAINLID 430
K+L+ T++ +RGIDV V+ V N+++P E Y+HRIGRT R G+ G AI+ I
Sbjct: 302 KILVATDIAARGIDVPGVSHVFNYELP------NVAEQYVHRIGRTARAGRDGQAISFIA 355
Query: 431 SPQAMEICTDIEAHFGKKIQLLDIEDAEEIEK 462
+ + + IE K+Q+L + + +EK
Sbjct: 356 NDERSYL-RSIERLTRVKLQILPLPENFVMEK 386
>UniRef50_Q39MK8 Cluster: DEAD/DEAH box helicase; n=10;
Proteobacteria|Rep: DEAD/DEAH box helicase -
Burkholderia sp. (strain 383) (Burkholderia cepacia
(strain ATCC 17760/ NCIB 9086 / R18194))
Length = 481
Score = 160 bits (389), Expect = 6e-38
Identities = 108/373 (28%), Positives = 195/373 (52%), Gaps = 21/373 (5%)
Query: 79 TFEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMIAQSQSGTGKTAAFVLAM 138
+F +L L LL+ + + + AP+ +Q A+P +L ++++A +Q+GTGKTA F L +
Sbjct: 2 SFASLGLIDPLLRNLQDLNYQAPTPVQAKAIPAVLGG--KDVMAGAQTGTGKTAGFALPL 59
Query: 139 LSRVDSN-----KNYPQVLCLSPTYELAIQTGEVAAKMAKFCPEIKLKYAVRGEEL-PRG 192
L R+ + N +VL L PT ELA Q + K +++ A G + P+
Sbjct: 60 LQRLVQHGPAVSSNRARVLVLVPTRELAEQVLQSFIAYGKGL-DLRFLAAYGGVSINPQM 118
Query: 193 SKITD--HILIGTPGKMFDWGVKFGMFDMGKIKVFVLDEADVMINRQGHQDQCIRIHKCL 250
K+ +L+ TPG++ D + +++ VLDEAD M++ G + + L
Sbjct: 119 MKLRKGVDVLVATPGRLLDLN-RQNAVQFDQVQTLVLDEADRMLDL-GFARELNAVFAAL 176
Query: 251 PSTCQMMFFSATYGTAVMQFAEIIVSNPIIIRLLREEESLDNIKQYYVKCKSAEDKYRAI 310
P+ Q + FSAT+ + A I+ P+ I + + IKQ+ V +K
Sbjct: 177 PAQRQTLLFSATFSDDIRAMAATILRGPVNISVSPPNATASKIKQWVVTVDK-RNKPDLF 235
Query: 311 CNIYGVITIGQAIIFCHTRKTASWLSEKMSKDGHSVAVLSGELTVEQRIAVLDRFRVGLE 370
++ A++F TR +L+ + + G++V + G+ R+ L+RF+ G
Sbjct: 236 MHLVAENKWEHALVFVKTRNGVDYLAAMLDEAGYAVDTIHGDKPQPARLRALERFKTGEV 295
Query: 371 KVLITTNVLSRGIDVEQVTLVVNFDMPMDMNRKADCETYLHRIGRTGRFGKAGIAINLID 430
++L+ T+V +RG+D++ + LV+N D+P+ + Y+HRIGRTGR G +G+A++L+
Sbjct: 296 QMLVATDVAARGLDIDDLPLVINVDLPI------VAQDYVHRIGRTGRAGASGVAVSLVC 349
Query: 431 SPQAMEICTDIEA 443
+ +A ++ IEA
Sbjct: 350 ADEAPQLAA-IEA 361
>UniRef50_UPI0000DB7226 Cluster: PREDICTED: similar to Probable
ATP-dependent RNA helicase DDX20 (DEAD box protein 20)
(DEAD box protein DP 103) (Component of gems 3)
(Gemin-3); n=1; Apis mellifera|Rep: PREDICTED: similar
to Probable ATP-dependent RNA helicase DDX20 (DEAD box
protein 20) (DEAD box protein DP 103) (Component of gems
3) (Gemin-3) - Apis mellifera
Length = 648
Score = 160 bits (388), Expect = 8e-38
Identities = 100/350 (28%), Positives = 183/350 (52%), Gaps = 19/350 (5%)
Query: 89 LLKGVYAMGFNAPSKIQETALPTLLADPPQNMIAQSQSGTGKTAAFVLAMLSRVDSNKNY 148
+L G+ GF PS IQ A+P L ++I +++SGTGKT F + L +D + +
Sbjct: 7 ILDGLSVCGFQRPSPIQLKAIP--LGRCGFDLIMRAKSGTGKTLVFCIISLEMIDIDISS 64
Query: 149 PQVLCLSPTYELAIQTGEVAAKMAKFCPEIKLKYAVRGEELPRGSKITDH--ILIGTPGK 206
QVL L+PT E+A+Q +V + + ++K++ + G + K ++ I +G PG+
Sbjct: 65 VQVLILAPTREIAVQIAQVFSSVGCEIKDLKVEVFIGGLAIENDKKKVNNCQIAVGAPGR 124
Query: 207 MFDWGVKFGMFDMGKIKVFVLDEADVMINRQGHQDQCIRIHKCLPSTCQMMFFSATYGTA 266
+ + G + +++FVLDEAD ++ +D K LP + Q++ SATY
Sbjct: 125 IRHL-IDKGFLKVENVRLFVLDEADKLMETSFQKDINYIFSK-LPLSKQVIASSATYPGD 182
Query: 267 VMQFAEIIVSNPIIIRLLREEESLDNIKQYYV-------KCKSAEDKYRAICNIYGVITI 319
+ F + + +P+++ E L ++Q+ K + K + I+ +
Sbjct: 183 LEIFLQTYMCSPVLVSPNNNEPILIGLRQFVTIVPSHPNAMKQVQIKVDELIKIFNKVPF 242
Query: 320 GQAIIFCHTRKTASWLSEKMSKDGHSVAVLSGELTVEQRIAVLDRFRVGLEKVLITTNVL 379
Q+++F + + A + K++ G + ++G + +R+ +++ + K+++TT++
Sbjct: 243 KQSLVFSNYQSRAQSVCNKINSIGFTATFIAGNQNMNKRLEAINKLKTFKCKIMLTTDLT 302
Query: 380 SRGIDVEQVTLVVNFDMPMDMNRKADCETYLHRIGRTGRFGKAGIAINLI 429
+RGID + V LVVN D+P D TYLHRIGR GR+G GI+I +I
Sbjct: 303 ARGIDADNVNLVVNLDLP------TDAPTYLHRIGRAGRYGSYGISITII 346
>UniRef50_UPI00004987FF Cluster: DEAD/DEAH box helicase; n=5;
Entamoeba histolytica HM-1:IMSS|Rep: DEAD/DEAH box
helicase - Entamoeba histolytica HM-1:IMSS
Length = 432
Score = 160 bits (388), Expect = 8e-38
Identities = 117/395 (29%), Positives = 208/395 (52%), Gaps = 26/395 (6%)
Query: 78 KTFEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMIAQSQSGTGKTAAFVLA 137
KTF+ L L P +LK V +G+ P++IQE ++P L +++I +Q+G+GKTA+F+L
Sbjct: 9 KTFKDLGLIPEVLKVVEYLGYKKPTRIQENSIPVALQK--KDIIGIAQTGSGKTASFLLP 66
Query: 138 MLSRV----DSNKNYPQVLCLSPTYELAIQTGEVAAKMAKFCPEIKLKYAVRGEELPRGS 193
M+ + + N+ + ++ + PT ELA Q EV +M K P + V G ++ + S
Sbjct: 67 MVQHLLNVKEKNRGFYCII-IEPTRELAAQVVEVIDEMGKALPGLTSCLLVGGMDVMKQS 125
Query: 194 ---KITDHILIGTPGKMFDW--GVKFGMFDMGKIKVFVLDEADVMINRQGHQDQCIRIHK 248
+++GTPG++ K + K+K V+DEAD ++ + I K
Sbjct: 126 VQLAKRPQVIVGTPGRIVYHIKNTKGVEESIEKVKFLVIDEADKLLEMDFANEIDYLIEK 185
Query: 249 CLPSTCQMMFFSATYGTAVMQFAEIIVSNPIIIRLLREE-ESLDNIKQYYVKCKSAEDKY 307
LP M FSAT T V + +++P+ I+ ++ +++D ++Q Y C KY
Sbjct: 186 -LPKQRTTMLFSATMSTKVEKLQRASLTHPVKIKEEEQKYQTVDTLRQEY--C-FIPFKY 241
Query: 308 RA--ICNIYGVITIGQAIIFCHTRKTASWLSEKMSKDGHSVAVLSGELTVEQRIAVLDRF 365
R + +I IIF + L + + G++ L G+++ ++R+ L++F
Sbjct: 242 RDGYLISILKETEGKTIIIFTMKCSGCTKLVMMLRQMGYAAIPLHGKMSQQKRLIALEKF 301
Query: 366 RVGLEKVLITTNVLSRGIDVEQVTLVVNFDMPMDMNRKADCETYLHRIGRTGRFGKAGIA 425
+ G +L+ T+V SRG+D+ V +V+N+D P++ + Y+HR+GRT R GK+G A
Sbjct: 302 KSGKRGILVATDVASRGLDIPNVDIVINYDCPLEP------KDYVHRVGRTARAGKSGYA 355
Query: 426 INLIDSPQAMEICTDIEAHFGKKIQLLDIEDAEEI 460
I L+ + ++E+ IE KK+ + + E I
Sbjct: 356 ITLV-TQYSIELYQRIETMIEKKLNEYKVNEKEAI 389
>UniRef50_A6DL95 Cluster: Probable ATP-dependent RNA helicase; n=1;
Lentisphaera araneosa HTCC2155|Rep: Probable
ATP-dependent RNA helicase - Lentisphaera araneosa
HTCC2155
Length = 482
Score = 160 bits (388), Expect = 8e-38
Identities = 105/351 (29%), Positives = 179/351 (50%), Gaps = 15/351 (4%)
Query: 80 FEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMIAQSQSGTGKTAAFVLAML 139
F+ L LK +L +Y G+ P+ IQ +L +L Q+ + ++++GTGKTAAF + L
Sbjct: 7 FQDLGLKKTILSAIYTAGYKKPTPIQNKSLKIILQG--QDALVRAKTGTGKTAAFAIPAL 64
Query: 140 SRVDSNKNYPQVLCLSPTYELAIQTGEVAAKMAKFCPEIKLKYAVRGEELPRGSKITDH- 198
+ + +PQVL L+P EL Q + K+ K ++ G +L G K + H
Sbjct: 65 QHLRAEVQHPQVLILTPGRELCKQISQEFIKLGKGLENFRVAEVTGGGKLS-GVKKSLHG 123
Query: 199 --ILIGTPGKMFDWGVKFGMFDMGKIKVFVLDEADVMINRQGHQDQCIRIHKCLPSTCQM 256
++ TPG++ D + G+ + I + V+DEAD + + G ++ I K LP + Q
Sbjct: 124 AQVISATPGRLIDIKEQ-GLLNSNCINMLVIDEADRLFD-MGFREAVTSILKDLPKSVQT 181
Query: 257 MFFSATYGTAVMQFAEIIVSNPIIIRLLREEESLDNIKQYYVKCKSAEDKYRAICNIYGV 316
+ SAT+ + F++ ++ P+II S +N++++ V E+ + +
Sbjct: 182 VLCSATFTDDIKNFSKTLLKKPVIIEDRSNIGSEENLEEWAVSVYP-ENHLKLTEKLLKK 240
Query: 317 ITIGQAIIFCHTRKTASWLSEKMSKDGHSVAVLSGELTVEQRIAVLDRFRVGLEKVLITT 376
Q I+FC+ ++ ++EK+ G V L + R L FR ++L+ T
Sbjct: 241 HKNDQVIVFCNHKERVDEVAEKLDDMGFDVHPLHSGMEKNVRNQALKLFRDKQVRILVAT 300
Query: 377 NVLSRGIDVEQVTLVVNFDMPMDMNRKADCETYLHRIGRTGRFGKAGIAIN 427
+V SRGID+ + LVVN+D+P D Y+HR GRT R GK+G+ I+
Sbjct: 301 DVASRGIDIPGLPLVVNYDLPYDF------PDYVHRAGRTARAGKSGLVIS 345
>UniRef50_P38712 Cluster: ATP-dependent rRNA helicase RRP3; n=6;
Ascomycota|Rep: ATP-dependent rRNA helicase RRP3 -
Saccharomyces cerevisiae (Baker's yeast)
Length = 501
Score = 160 bits (388), Expect = 8e-38
Identities = 121/445 (27%), Positives = 220/445 (49%), Gaps = 20/445 (4%)
Query: 10 EELEISNKVAGLGLD-KKHNQETDSDDVPDTPNAADTSLLMKIIRQGLVESKLDIEIQRK 68
E ++ K+ L+ +K E + + ++ + D + K + + +SK + Q +
Sbjct: 15 ELTSLAEKIRAKALENQKKLIEAEKEGGSESDSEEDATAEKKKVLKS--KSKSTVSTQNE 72
Query: 69 DPNSPLYSVKTFEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMIAQSQSGT 128
+ N S ++F L+L P L++ + ++ P+ IQ A+P L ++I +Q+G+
Sbjct: 73 NTNED-ESFESFSELNLVPELIQACKNLNYSKPTPIQSKAIPPALEG--HDIIGLAQTGS 129
Query: 129 GKTAAFVLAMLSRVDSNKNYPQVLCLSPTYELAIQTGEVAAKMAKFCPEIKLKYAVRGEE 188
GKTAAF + +L+R+ ++ L+PT ELA Q E + ++ V G
Sbjct: 130 GKTAAFAIPILNRLWHDQEPYYACILAPTRELAQQIKETFDSLGSLMG-VRSTCIVGGMN 188
Query: 189 L---PRGSKITDHILIGTPGKMFDWGVKFGMFDMGKIKVFVLDEADVMINRQGHQDQCIR 245
+ R HI+I TPG++ D F + K+K V+DEAD +++ + R
Sbjct: 189 MMDQARDLMRKPHIIIATPGRLMDHLENTKGFSLRKLKFLVMDEADRLLDME-FGPVLDR 247
Query: 246 IHKCLPSTCQMMF-FSATYGTAVMQFAEIIVSNPIIIRLLREEESLDNIKQYYVKCKSAE 304
I K +P+ + + FSAT + + + ++NP+ + + +++D + Q +
Sbjct: 248 ILKIIPTQERTTYLFSATMTSKIDKLQRASLTNPVKCAVSNKYQTVDTLVQTLMVVPGGL 307
Query: 305 DKYRAICNIYGVITIGQAIIFCHTRKTASWLSEKMSKDGHSVAVLSGELTVEQRIAVLDR 364
K + + IIF T+ A LS + S L G+L QR+ LD
Sbjct: 308 -KNTYLIYLLNEFIGKTMIIFTRTKANAERLSGLCNLLEFSATALHGDLNQNQRMGSLDL 366
Query: 365 FRVGLEKVLITTNVLSRGIDVEQVTLVVNFDMPMDMNRKADCETYLHRIGRTGRFGKAGI 424
F+ G +L+ T+V +RG+D+ V +VVN+D+P+ D ++Y+HR+GRT R G++G
Sbjct: 367 FKAGKRSILVATDVAARGLDIPSVDIVVNYDIPV------DSKSYIHRVGRTARAGRSGK 420
Query: 425 AINLIDSPQAMEICTDIEAHFGKKI 449
+I+L+ S +E+ IE GKK+
Sbjct: 421 SISLV-SQYDLELILRIEEVLGKKL 444
>UniRef50_Q8D3Y6 Cluster: ATP-dependent RNA helicase, DEAD box
family; n=8; Gammaproteobacteria|Rep: ATP-dependent RNA
helicase, DEAD box family - Vibrio vulnificus
Length = 447
Score = 159 bits (387), Expect = 1e-37
Identities = 126/387 (32%), Positives = 190/387 (49%), Gaps = 23/387 (5%)
Query: 80 FEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMIAQSQSGTGKTAAFVLAML 139
F+ L L LLK + + F +KIQ+ A+P +A ++++A S++G+GKT AFVL ML
Sbjct: 7 FKDLGLDNRLLKNLKHLDFQKATKIQQQAIPVAIAG--KDLLASSKTGSGKTLAFVLPML 64
Query: 140 SRVDSNKNY----PQVLCLSPTYELAIQT-GEVAAKMAKFCPEIKLKYAVRGEELPRGSK 194
+ K P+ + L+PT ELA Q GE+ + + L V GE K
Sbjct: 65 HKSLKTKALSARDPRGVILAPTRELAKQVYGELRTMLGGLSYDATL--IVGGENFNDQVK 122
Query: 195 ITDH---ILIGTPGKMFDWGVKFGMFDMGKIKVFVLDEADVMINRQGHQDQCIRIHKCLP 251
++ TPG++ D +F G ++ VLDEAD M++ G + RIH
Sbjct: 123 ALARYPKFIVATPGRLADHLEHKSVFLEG-LETLVLDEADRMLDL-GFAPELRRIHNAAK 180
Query: 252 STC-QMMFFSATYGTA-VMQFAEIIVSNPIIIRLLREEESLDNIKQYYVKCKSAEDKYRA 309
Q + FSAT A V A ++ P I + E +I Q + C + K
Sbjct: 181 HRRRQTLMFSATLDHAEVNDIASEMLDAPKRIAIGVSNEEHKDITQRFYLCDHLDHKEAL 240
Query: 310 ICNIYGVITIGQAIIFCHTRKTASWLSEKMSKDGHSVAVLSGELTVEQRIAVLDRFRVGL 369
+ + Q IIF TR L+EK+++ LSG L QR ++ +F +
Sbjct: 241 LERVLSEAEYRQVIIFTATRSDTDRLTEKLNEKKLKAIALSGSLNQNQRNTIMSQFERTV 300
Query: 370 EKVLITTNVLSRGIDVEQVTLVVNFDMPMDMNRKADCETYLHRIGRTGRFGKAGIAINLI 429
K+L+TT+V SRG+D+ VT V+NFDMP E Y+HRIGRTGR G G AI+L+
Sbjct: 301 FKILVTTDVASRGLDISTVTHVINFDMP------KHTEEYVHRIGRTGRAGNKGDAISLV 354
Query: 430 DSPQAMEICTDIEAHFGKKIQLLDIED 456
P+ + +EA+ + I + +D
Sbjct: 355 -GPKDWDSFKRVEAYLQQDIAFSEFDD 380
>UniRef50_Q8GY84 Cluster: DEAD-box ATP-dependent RNA helicase 10;
n=34; Eukaryota|Rep: DEAD-box ATP-dependent RNA helicase
10 - Arabidopsis thaliana (Mouse-ear cress)
Length = 456
Score = 159 bits (387), Expect = 1e-37
Identities = 117/399 (29%), Positives = 202/399 (50%), Gaps = 31/399 (7%)
Query: 77 VKTFEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMIAQSQSGTGKTAAFVL 136
VKTF L ++ L+K +G+ PSKIQ ALP L +++I +Q+G+GKT AF +
Sbjct: 8 VKTFAELGVREELVKACERLGWKNPSKIQAEALPFALEG--KDVIGLAQTGSGKTGAFAI 65
Query: 137 AMLSRV-----DSNKNYPQ-------VLCLSPTYELAIQTGEVAAKMAKFCPEIKLKYAV 184
+L + DS + LSPT ELAIQ +A + +I L+ AV
Sbjct: 66 PILQALLEYVYDSEPKKGRRPDPAFFACVLSPTRELAIQ---IAEQFEALGADISLRCAV 122
Query: 185 RGEELPRGSKIT-----DHILIGTPGKMFDWGVKFGMFDMGKIKVFVLDEADVMINRQGH 239
+ R + H+++ TPG+++D F + +K VLDEAD ++N +
Sbjct: 123 LVGGIDRMQQTIALGKRPHVIVATPGRLWDHMSDTKGFSLKSLKYLVLDEADRLLN-EDF 181
Query: 240 QDQCIRIHKCLPSTCQMMFFSATYGTAVMQFAEIIVSNPIIIRLLREEESLDNIKQYYVK 299
+ +I + +P + FSAT V + + NP+ I + ++D +KQ Y +
Sbjct: 182 EKSLNQILEEIPLERKTFLFSATMTKKVRKLQRACLRNPVKIEAASKYSTVDTLKQQY-R 240
Query: 300 CKSAEDKYRAICNIYGVITIGQAIIFCHTRKTASWLSEKMSKDGHSVAVLSGELTVEQRI 359
+A+ K + I + ++IF T +L+ + G +SG++T +R+
Sbjct: 241 FVAAKYKDCYLVYILSEMPESTSMIFTRTCDGTRFLALVLRSLGFRAIPISGQMTQSKRL 300
Query: 360 AVLDRFRVGLEKVLITTNVLSRGIDVEQVTLVVNFDMPMDMNRKADCETYLHRIGRTGRF 419
L++F+ G +L+ T+V SRG+D+ V +V+N+D+P + + Y+HR+GRT R
Sbjct: 301 GALNKFKAGECNILVCTDVASRGLDIPSVDVVINYDIP------TNSKDYIHRVGRTARA 354
Query: 420 GKAGIAINLIDSPQAMEICTDIEAHFGKKIQLLDIEDAE 458
G++G+ I+L++ + +E IE GKK+ E+ E
Sbjct: 355 GRSGVGISLVNQYE-LEWYIQIEKLIGKKLPEYPAEEDE 392
>UniRef50_Q5CHB7 Cluster: Putative uncharacterized protein; n=2;
Cryptosporidium|Rep: Putative uncharacterized protein -
Cryptosporidium hominis
Length = 868
Score = 159 bits (386), Expect = 1e-37
Identities = 105/371 (28%), Positives = 196/371 (52%), Gaps = 23/371 (6%)
Query: 79 TFEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMIAQSQSGTGKTAAFVLAM 138
TF++ P LL+ + +G++ P+ IQ P++LA ++++A +++G+GKTA FVL M
Sbjct: 5 TFQSFGFSPKLLESIKIIGYSLPTPIQRKCFPSILAG--RDVVAMARTGSGKTAGFVLPM 62
Query: 139 LSRVDSNKNYP---QVLCLSPTYELAIQTGEVAAKMAKFCPEIKLKYAVRG-EELPRGSK 194
+ R+ + + + + LSPT ELA+QT V K+A C + A+ G L R +
Sbjct: 63 IERLGCSHSQIVGIRGVVLSPTRELALQTYRVVRKLA--CKTNLVVCALTGGSSLDRQFE 120
Query: 195 ITD---HILIGTPGKMFDWGVKFGMFDMGKIKVFVLDEADVMINRQGHQDQCIRIHKCLP 251
I++ TPG++F ++ G+ + +K+ +LDEAD + G Q +I + +P
Sbjct: 121 SLSGNPDIVVATPGRLFHHIIEAGL-SLIAVKIIILDEADRLFE-MGLASQIEKILESIP 178
Query: 252 STCQMMFFSATYGTAVMQFAEIIVSNPIIIRLLREEESLDNIKQYYVKCKSAEDKYRAIC 311
Q + SAT TA+ F++++++ P +I++ + + +K ++ + E +
Sbjct: 179 KNRQCVLVSATMPTALASFSKVMLNEPEVIQIDSDYILSETLKLTFLFVREDEKLASLLY 238
Query: 312 NIYGVITIGQ-AIIFCHTRKTASWLSEKMSKDGHSVAVLSGELTVEQRIAVLDRFRVGLE 370
+ I + AIIFC T+ ++ + + + V+ + G + E R L FR
Sbjct: 239 LLRNTIPSHERAIIFCATKHHVDYIVKILESNNIIVSYIYGNMDQEARTMHLSTFRKNKS 298
Query: 371 KVLITTNVLSRGIDVEQVTLVVNFDMPMDMNRKADCETYLHRIGRTGRFGKAGIAINLI- 429
+ L+ T++ +RG+D+ + V+NFD P+ + ++HR GRT R G+ G A +LI
Sbjct: 299 RALVVTDIAARGVDIPMIKYVINFDFPLSP------KLFVHRTGRTARAGQHGRAFSLIT 352
Query: 430 --DSPQAMEIC 438
D P +++C
Sbjct: 353 SRDLPYTIDLC 363
>UniRef50_A2DES1 Cluster: DEAD/DEAH box helicase family protein;
n=1; Trichomonas vaginalis G3|Rep: DEAD/DEAH box
helicase family protein - Trichomonas vaginalis G3
Length = 640
Score = 159 bits (386), Expect = 1e-37
Identities = 113/349 (32%), Positives = 185/349 (53%), Gaps = 20/349 (5%)
Query: 89 LLKGVYAMGFNAPSKIQETALPTLLADPPQNMIAQSQSGTGKTAAFV----LAMLSRVDS 144
L+ + GF P+ IQ A+P +L+ +++I + +G+GKT AF+ L +L++ +
Sbjct: 112 LMSHLRLRGFKQPTSIQCQAIPCILSG--RDIIGCAVTGSGKTLAFIIPCLLHVLAQPPT 169
Query: 145 NKNYPQVLCLSPTYELAIQTGEVAAKMAKFCPEIKLKYAVRGEELP---RGSKITDHILI 201
+ + LSPT ELA QT K+ + K V G ++ R K +++I
Sbjct: 170 GQYEAAAVILSPTRELAYQTHIECQKIFSLMDK-KSACLVGGNDIENQLRAIKNGSNVII 228
Query: 202 GTPGKMFDWGVKFGMFDMGKIKVFVLDEADVMINRQGHQDQCIRIHKCLPSTCQMMFFSA 261
TPG+ D + F++ K+ V+DEAD M + G + Q IRI + + Q + FSA
Sbjct: 229 ATPGRFIDL-LSSSAFNIKKVSYLVIDEADRMFDL-GFEPQVIRIAERMRKDRQTLMFSA 286
Query: 262 TYGTAVMQFAEIIVSNPIIIRLLREEESLDNIKQYYVKCKSAEDKYRAICNIYGVITI-G 320
T+ V + A ++ N I I + NI Q + + ++K+ ++ I G T G
Sbjct: 287 TFPHTVERIARKLLQNSIEIVVGLRNVVTPNINQS-ILVTNEDNKFNSLLKILGDYTTQG 345
Query: 321 QAIIFCHTRKTASWLSEKMSKDGHSVAVLSGELTVEQRIAVLDRFRVGLEKVLITTNVLS 380
QA++F +T+ A L K++K G+SV +L G + R ++L FR G VL+ T+V +
Sbjct: 346 QALVFTNTQDRAEDLFGKLNKSGYSVGLLHGSMDSPDRNSILHDFREGRFSVLVLTSVGA 405
Query: 381 RGIDVEQVTLVVNFDMPMDMNRKADCETYLHRIGRTGRFGKAGIAINLI 429
RGID+ + V+N+D P + +AD Y+HR+GRTGR GK G A +
Sbjct: 406 RGIDIASIICVINYDAP---DHEAD---YVHRVGRTGRAGKKGYAFTFV 448
>UniRef50_Q5KIK3 Cluster: ATP-dependent RNA helicase DRS1; n=1;
Filobasidiella neoformans|Rep: ATP-dependent RNA
helicase DRS1 - Cryptococcus neoformans (Filobasidiella
neoformans)
Length = 808
Score = 159 bits (386), Expect = 1e-37
Identities = 125/439 (28%), Positives = 215/439 (48%), Gaps = 31/439 (7%)
Query: 6 GQKAEELEISNKVAGLGLDKKHNQETDSDD------VPDTPNAADTSLLMKIIRQGLVES 59
G + +E EI + D++ +E D D V D+ + ++ +I R+ S
Sbjct: 151 GDEEDENEIESLKREDESDEEEEEEEDDYDEEGENEVVDSDSESEEETAAEIARKDAFFS 210
Query: 60 KLDIEIQRKDPNSPLYSVKTFEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQN 119
+ DP P +F A++L LL+ + ++ F AP+ IQ A+P L ++
Sbjct: 211 S---DPTTTDPTLP----SSFTAMNLSRPLLRALTSLQFTAPTPIQARAIPLALLG--RD 261
Query: 120 MIAQSQSGTGKTAAFVLAMLSRV---DSNKNYP--QVLCLSPTYELAIQTGEVAAKMA-K 173
++ + +G+GKTAAF++ +L R+ D K +VL L PT ELA+Q V +A K
Sbjct: 262 ILGSAVTGSGKTAAFMVPILERLCYRDRGKGGAACRVLVLCPTRELAVQCEAVGKALAEK 321
Query: 174 FCPEIKLKYAVRGEELPRGS---KITDHILIGTPGKMFDWGVKFGMFDMGKIKVFVLDEA 230
+++ V G L + + ILI TPG++ D F + + V V+DEA
Sbjct: 322 GGLDVRFALLVGGLSLNAQAHTLRTLPDILIATPGRLIDHLTNTPSFTLSALDVLVIDEA 381
Query: 231 DVMINRQGHQDQCIRIHKCLPSTCQMMFFSATYGTAVMQFAEIIVSNPIIIRLLREEESL 290
D M+ G D+ I K P + Q M FSAT +V + ++ + PI + + + +
Sbjct: 382 DRMLEA-GFTDELEEIIKACPRSRQTMLFSATMTDSVDELVKLSLDKPIRVFVDPKRNTA 440
Query: 291 DNIKQYYVKCKSAEDKYRAICNIYGVITIGQAIIFCHTRKTASWLSEKMSKDGHSVAVLS 350
+ Q +V+ +S + + ++ + + IIF ++ A + G A L
Sbjct: 441 RGLTQEFVRIRSDDSRSPSLLALCKRTIREKCIIFFRSKALAHQMRIVFGLFGLKAAELH 500
Query: 351 GELTVEQRIAVLDRFRVGLEKVLITTNVLSRGIDVEQVTLVVNFDMPMDMNRKADCETYL 410
G LT EQR+ L+ F+ G L+ T++ SRG+D++ V V+N+DMP + + Y
Sbjct: 501 GNLTQEQRLQALNDFKAGTVDYLLATDLASRGLDIKGVETVINYDMPGQLAQ------YT 554
Query: 411 HRIGRTGRFGKAGIAINLI 429
HR+GRT R G+ G +++L+
Sbjct: 555 HRVGRTARAGRKGRSVSLV 573
>UniRef50_Q4SP80 Cluster: Chromosome 15 SCAF14542, whole genome
shotgun sequence; n=5; Euteleostomi|Rep: Chromosome 15
SCAF14542, whole genome shotgun sequence - Tetraodon
nigroviridis (Green puffer)
Length = 366
Score = 159 bits (385), Expect = 2e-37
Identities = 79/211 (37%), Positives = 133/211 (63%), Gaps = 7/211 (3%)
Query: 250 LPSTCQMMFFSATYGTAVMQFAEIIVSNPIIIRLLREEESLDNIKQYYVKCKSAEDKYRA 309
L + Q++ SAT V++ + + +P+ I + +EE +L+ IKQ+Y+ + E K
Sbjct: 163 LSTNIQVVLLSATMPAEVLEVTKKFMRDPVRILVKKEELTLEGIKQFYINVEREEWKLDT 222
Query: 310 ICNIYGVITIGQAIIFCHTRKTASWLSEKMSKDGHSVAVLSGELTVEQRIAVLDRFRVGL 369
+C++Y +TI QA+IF +TR+ WL+EKM +V+ L G++ ++R ++ FR G
Sbjct: 223 LCDLYETLTITQAVIFLNTRRKVDWLTEKMHARDFTVSALHGDMDQKERDVIMREFRSGS 282
Query: 370 EKVLITTNVLSRGIDVEQVTLVVNFDMPMDMNRKADCETYLHRIGRTGRFGKAGIAINLI 429
+VLITT++L+RGIDV+QV+LV+N+D+P NR E Y+HRIGR GRFG+ G+AIN +
Sbjct: 283 SRVLITTDLLARGIDVQQVSLVINYDLP--TNR----ENYIHRIGRGGRFGRKGVAINFV 336
Query: 430 DSPQAMEICTDIEAHFGKKIQLLDIEDAEEI 460
+ + + DIE + ++ + + A+ I
Sbjct: 337 -TEEDKRVLRDIETFYNTTVEEMPMNVADLI 366
Score = 74.1 bits (174), Expect = 7e-12
Identities = 37/84 (44%), Positives = 58/84 (69%), Gaps = 2/84 (2%)
Query: 80 FEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMIAQSQSGTGKTAAFVLAML 139
F+ ++LK +LL+G+YA GF PS IQ+ A+ + ++IAQ+QSGTGKTA F +++L
Sbjct: 37 FDDMNLKESLLRGIYAYGFEKPSAIQQRAIIPCIKG--YDVIAQAQSGTGKTATFAISIL 94
Query: 140 SRVDSNKNYPQVLCLSPTYELAIQ 163
+++ ++ Q L L+PT ELA Q
Sbjct: 95 QQLEIDQKETQALVLAPTRELAQQ 118
>UniRef50_Q9KNA4 Cluster: ATP-dependent RNA helicase, DEAD box
family; n=48; Gammaproteobacteria|Rep: ATP-dependent RNA
helicase, DEAD box family - Vibrio cholerae
Length = 452
Score = 159 bits (385), Expect = 2e-37
Identities = 126/387 (32%), Positives = 194/387 (50%), Gaps = 27/387 (6%)
Query: 76 SVKTFEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMIAQSQSGTGKTAAFV 135
S F+ L L LLK + F ++IQ+ A+P +A ++++A S++G+GKT AFV
Sbjct: 3 STLQFKDLGLDNRLLKNLAHYNFKQATEIQQQAIPLTIAG--RDLLASSKTGSGKTLAFV 60
Query: 136 LAMLSRVDSNKNY----PQVLCLSPTYELAIQT-GEVAAKMAKFCPEIKL-----KYAVR 185
L ML + K + P+ L L PT ELA Q GE+ + + L + +
Sbjct: 61 LPMLHKSLKTKAFSAKDPRGLILVPTRELAKQVYGELRSMLGGLSYTATLITGGENFNDQ 120
Query: 186 GEELPRGSKITDHILIGTPGKMFDWGVKFGMFDMGKIKVFVLDEADVMINRQGHQDQCIR 245
+ L RG + ++ TPG++ D +F G ++ VLDEAD M++ G + R
Sbjct: 121 VKALARGPRF----IVATPGRLADHLDHRSLFLEG-LETLVLDEADRMLDL-GFAKELRR 174
Query: 246 IHKCLPSTC-QMMFFSATYGTA-VMQFAEIIVSNPIIIRLLREEESLDNIKQYYVKCKSA 303
IH Q + FSAT A V A +++ P I + E +I Q++ C
Sbjct: 175 IHNAAKHRRRQTLMFSATLDHADVNDMAMELLNEPKRIAIGVGSEEHKDITQHFYLCDHL 234
Query: 304 EDKYRAICNIYGVITIGQAIIFCHTRKTASWLSEKMSKDGHSVAVLSGELTVEQRIAVLD 363
+ K + I Q IIF TR L+EK++++ LSG L QR ++
Sbjct: 235 DHKEALLDRILADAEYRQVIIFTATRADTDRLTEKLNQNNLKAVALSGNLNQTQRNTIMG 294
Query: 364 RFRVGLEKVLITTNVLSRGIDVEQVTLVVNFDMPMDMNRKADCETYLHRIGRTGRFGKAG 423
+F + K+L+TT+V SRG+D+ VT V+NFDMP E Y+HR+GRTGR G G
Sbjct: 295 QFERAVFKILVTTDVASRGLDIPAVTHVINFDMP------KHTEEYVHRVGRTGRAGNKG 348
Query: 424 IAINLIDSPQAMEICTDIEAHFGKKIQ 450
A++L+ P+ E +EA ++IQ
Sbjct: 349 DAMSLV-GPKDWESFKRVEAFLQQEIQ 374
>UniRef50_A6GSW1 Cluster: Putative ATP-dependent RNA helicase; n=1;
Limnobacter sp. MED105|Rep: Putative ATP-dependent RNA
helicase - Limnobacter sp. MED105
Length = 617
Score = 158 bits (384), Expect = 3e-37
Identities = 110/391 (28%), Positives = 198/391 (50%), Gaps = 24/391 (6%)
Query: 79 TFEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMIAQSQSGTGKTAAFVLAM 138
+F+ + L LL+ + A+ AP+ +Q+ +P L +++ SQ+G+GKT F+L +
Sbjct: 2 SFDDMGLAAPLLQALNALNITAPTLVQQEVVP--LGKDGGDLMVSSQTGSGKTFGFLLPV 59
Query: 139 LSRVDSNKNYP-------QVLCLSPTYELAIQTGEVAAKMAKFCPEIKLKYAVRGEELPR 191
+ R+ + + P + L L PT ELA Q + A + KF +++ V G +P
Sbjct: 60 MHRMMTGEQSPMEMLAGPECLVLCPTRELAQQVSQDAINLVKFTKGVRVATVVGG--MPY 117
Query: 192 GSKITD----HILIGTPGKMFDWGVKFGMFDMGKIKVFVLDEADVMINRQGHQDQCIRIH 247
G ++ I++GTPG++ D + G ++ + ++DEAD M++ G + I
Sbjct: 118 GKQMASLRGARIVVGTPGRLLDLAQQ-GKLNLSTVTTLIVDEADRMLDL-GFSEDLEAID 175
Query: 248 KCLPSTCQMMFFSATYGTAVMQFAEIIVSNPIIIRLLREEESLDNIKQYYVKCKSAEDKY 307
+ + Q + FSAT+ ++ AE I++NP I + + E+ +I Q + + K
Sbjct: 176 QLCGNRIQTLMFSATFAKRIIGLAENIMNNPKRIEMAAQNEANTDIAQKLMWADNRGHKR 235
Query: 308 RAICNIYGVITIGQAIIFCHTRKTASWLSEKMSKDGHSVAVLSGELTVEQRIAVLDRFRV 367
+ + + + QA++F T+ A L+ ++ +G L G + R L R
Sbjct: 236 KLLNHWLEHPDMVQAVVFTSTQIDAENLARDLADEGVRACALHGGMPQVVRNRRLASVRK 295
Query: 368 GLEKVLITTNVLSRGIDVEQVTLVVNFDMPMDMNRKADCETYLHRIGRTGRFGKAGIAIN 427
G KVL+ T+V +RG+DV ++ V+N+ MPM E Y+HRIGRTGR G++G+A+
Sbjct: 296 GDIKVLVATDVAARGLDVPAISHVINYGMPM------KSEDYVHRIGRTGRAGRSGVAVT 349
Query: 428 LIDSPQAMEICTDIEAHFGKKIQLLDIEDAE 458
L ++ + + IE +I +E E
Sbjct: 350 LAEACDIISV-RGIERFINSRIPEEQVEGLE 379
>UniRef50_Q9SQV1 Cluster: Probable DEAD-box ATP-dependent RNA
helicase 40; n=2; core eudicotyledons|Rep: Probable
DEAD-box ATP-dependent RNA helicase 40 - Arabidopsis
thaliana (Mouse-ear cress)
Length = 1088
Score = 158 bits (384), Expect = 3e-37
Identities = 118/358 (32%), Positives = 194/358 (54%), Gaps = 25/358 (6%)
Query: 79 TFEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMIAQSQSGTGKTA-----A 133
TFE+ L P +L+ + + GF +P+ IQ P L ++++A +++G+GKT A
Sbjct: 436 TFESSGLPPEILRELLSAGFPSPTPIQAQTWPIALQS--RDIVAIAKTGSGKTLGYLIPA 493
Query: 134 FVLAMLSRVDSNKNYPQVLCLSPTYELAIQTGEVAAKMAKFCP-EIKLKY--AVRGEELP 190
F+L R DS +N P VL L+PT ELA Q + A + + Y A +G +L
Sbjct: 494 FILLRHCRNDS-RNGPTVLILAPTRELATQIQDEALRFGRSSRISCTCLYGGAPKGPQLK 552
Query: 191 RGSKITDHILIGTPGKMFDWGVKFGMFDMGKIKVFVLDEADVMINRQGHQDQCIRIHKCL 250
+ D I++ TPG++ D ++ M D ++ + VLDEAD M++ G + Q +I +
Sbjct: 553 ELERGAD-IVVATPGRLNDI-LEMKMIDFQQVSLLVLDEADRMLD-MGFEPQIRKIVNEI 609
Query: 251 PSTCQMMFFSATYGTAVMQFAEIIVSNPIIIRLLREEESLDN--IKQYYVKCKSAEDKYR 308
P Q + ++AT+ V + A ++ NP+ + + R +E N I QY V+ +K R
Sbjct: 610 PPRRQTLMYTATWPKEVRKIASDLLVNPVQVNIGRVDELAANKAITQY-VEVVPQMEKER 668
Query: 309 AICNIYGVITIG-QAIIFCHTRKTASWLSEKMSKDGHSVAVLSGELTVEQRIAVLDRFRV 367
+ I G + IIFC T++ L+ + + +V V+ G+ T +R VL++FR
Sbjct: 669 RLEQILRSQERGSKVIIFCSTKRLCDHLARSVGRHFGAV-VIHGDKTQGERDWVLNQFRS 727
Query: 368 GLEKVLITTNVLSRGIDVEQVTLVVNFDMPMDMNRKADCETYLHRIGRTGRFGKAGIA 425
G VLI T+V +RG+D++ + +V+N+D P + E Y+HRIGRTGR G G+A
Sbjct: 728 GKSCVLIATDVAARGLDIKDIRVVINYDFPTGV------EDYVHRIGRTGRAGATGVA 779
>UniRef50_UPI00015BD198 Cluster: UPI00015BD198 related cluster; n=1;
unknown|Rep: UPI00015BD198 UniRef100 entry - unknown
Length = 364
Score = 158 bits (383), Expect = 3e-37
Identities = 109/349 (31%), Positives = 176/349 (50%), Gaps = 15/349 (4%)
Query: 85 LKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMIAQSQSGTGKTAAFVLAMLSRVDS 144
L L K + G+ P+ IQ A+P LA +++ Q+ +GTGKT AF + ++ ++
Sbjct: 7 LSLELQKALEDAGYKEPTPIQRDAIP--LALEGYDILGQAATGTGKTGAFAIPIVEKLQK 64
Query: 145 NKNYPQVLCLSPTYELAIQTGEVAAKMAKFCPEIKLKYAVRGEELPRGSKITDH----IL 200
K + L L+PT ELAIQ E + K+ + G + + I + IL
Sbjct: 65 GKPDVKALVLTPTRELAIQVKEQIYMLTKY-KRLSSYVFYGGTSVKQNLDILQNKNVDIL 123
Query: 201 IGTPGKMFDWGVKFGMFDMGKIKVFVLDEADVMINRQGHQDQCIRIHKCLPSTCQMMFFS 260
IGTPG++ D + ++ K++ VLDE D M++ G + I LP FS
Sbjct: 124 IGTPGRIKDL-IDRKALNLSKVEYLVLDEFDQMLD-MGFIEDIEYIISFLPKERTTYMFS 181
Query: 261 ATYGTAVMQFAEIIVSNPIIIRLLREEESLDNIKQYYVKCKSAEDKYRAICNIYGVITIG 320
AT + + A+ + + ++ E NI++ +K S +K + +I +
Sbjct: 182 ATVPSRIELLAKRFLKSDFKFVKVQSVELKPNIEEKMIKLSSPGEKIHELMHIIDTHPME 241
Query: 321 QAIIFCHTRKTASWLSEKMSKDGHSVAVLSGELTVEQRIAVLDRFRVGLEKVLITTNVLS 380
+ +IF T+K A L ++K G L G+LT QR L F+ G +LI T+V +
Sbjct: 242 KMLIFVKTKKDAKDLFFLLTKKGIRAQALHGDLTQRQREKALSAFKSGAVSILIATDVAA 301
Query: 381 RGIDVEQVTLVVNFDMPMDMNRKADCETYLHRIGRTGRFGKAGIAINLI 429
RG+D++ V +V+N+++P D E Y+HRIGRTGR GK+G A +LI
Sbjct: 302 RGLDIKDVGVVINYNIP------EDPELYIHRIGRTGRIGKSGKAFSLI 344
>UniRef50_Q835K0 Cluster: ATP-dependent RNA helicase, DEAD/DEAH box
family; n=55; Lactobacillales|Rep: ATP-dependent RNA
helicase, DEAD/DEAH box family - Enterococcus faecalis
(Streptococcus faecalis)
Length = 449
Score = 158 bits (383), Expect = 3e-37
Identities = 112/391 (28%), Positives = 207/391 (52%), Gaps = 24/391 (6%)
Query: 79 TFEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMIAQSQSGTGKTAAFVLAM 138
+F+ +P + + + GF P+++QE +P + +++I QSQ+G+GKT F+L +
Sbjct: 3 SFKQFQFQPFINEALAEKGFEEPTEVQEKLIPIIKKG--KSVIGQSQTGSGKTHTFLLPL 60
Query: 139 LSRVDSNKNYPQVLCLSPTYELAIQTGEVAAKMAKFC-PEIKLKYAVRGEELPRG-SKIT 196
+ +V + Q++ +P+ ELA Q + A ++A+F PEI++ V G + R +K+
Sbjct: 61 MDKVKPTIDEVQIVITAPSRELANQIYQEAQQLARFSQPEIRVSNFVGGTDKQRQLNKLK 120
Query: 197 D---HILIGTPGKMFDWGVKFGMFDMGKIKVFVLDEADVMINRQGHQDQCIRIHKCLPST 253
H++IGTPG++ D + + FV+DEAD+ ++ G + +I LP
Sbjct: 121 HQQPHVVIGTPGRILDM-MNEQALKVHTAFAFVVDEADMTLD-MGFLAEVDQIAGRLPEK 178
Query: 254 CQMMFFSATYGTAVMQFAEIIVSNPIIIRLLREEESLDNIKQYYVKCKSAEDKYRAICNI 313
QM+ FSAT + F + + NP+I + + + I + + K I
Sbjct: 179 LQMLVFSATIPEKLRPFLKKYLENPVIEHIKPKAVISETIDNWLISTKGKNSNKI----I 234
Query: 314 YGVITIGQ---AIIFCHTRKTASWLSEKMSKDGHSVAVLSGELTVEQRIAVLDRFRVGLE 370
Y ++TIG AI+F +T++ +++ + G VA + G++T +R V+ + +
Sbjct: 235 YQLLTIGHPYLAIVFANTKQRVDEITDYLKDQGLKVAKIHGDITPRERKRVMRQVQNLDY 294
Query: 371 KVLITTNVLSRGIDVEQVTLVVNFDMPMDMNRKADCETYLHRIGRTGRFGKAGIAINLID 430
+ ++ T++ +RGID+E V+ V+N ++P ++ + ++HR+GRTGR G G AI L
Sbjct: 295 QYVVATDLAARGIDIEGVSHVINAEVPHEL------DFFIHRVGRTGRNGLNGTAITLY- 347
Query: 431 SPQAMEICTDIEAHFGKKIQLLDIEDAEEIE 461
SP E T IE G + +I++ E +E
Sbjct: 348 SPADDEAITQIE-QLGVSFKPKEIKNGEIVE 377
>UniRef50_Q5FLW7 Cluster: RNA helicase; n=9; Lactobacillus|Rep: RNA
helicase - Lactobacillus acidophilus
Length = 453
Score = 158 bits (383), Expect = 3e-37
Identities = 108/391 (27%), Positives = 204/391 (52%), Gaps = 24/391 (6%)
Query: 80 FEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMIAQSQSGTGKTAAFVLAML 139
FE + P L +G+ + F P+K+QE +P +L+D +++ Q+ +G+GKT A+++ +
Sbjct: 5 FEDSRINPALQEGLKKINFVKPTKVQEKVIPAMLSD--LSVVVQAATGSGKTHAYLVPIF 62
Query: 140 SRVDSNKNYPQVLCLSPTYELAIQTGEVAAKMAKFCP-EIKLKYAVRG----EELPRGSK 194
+ +D +Y Q + P+ ELA Q +VA K+ + + G +L +
Sbjct: 63 NEIDEAAHYVQAIVTLPSRELADQLYQVARKLRDAAGMHFSIAHLAGGTDRERQLEKYQN 122
Query: 195 ITDHILIGTPGKMFDWGVKFGMFDMGKIKVFVLDEADVMINRQGHQDQCIRIHKCLPSTC 254
T ++I TPG++ D+ V+ +F + ++K FV+DEAD+ ++ G ++ +P
Sbjct: 123 NTPQLVIATPGRLLDF-VQKKVFAVDQVKTFVIDEADMTLD-MGFLSDIDQVASKMPKDV 180
Query: 255 QMMFFSATYGTAVMQFAEIIVSNPIIIRLLREEESLDNIKQYYVKCKSAEDKYRAICNIY 314
Q+ FSAT + F +++P I + IK + S + K +Y
Sbjct: 181 QIAAFSATIPVKLSNFLRKYMAHPDQIVIDNPSIIAPTIKNDLIDIGSKDRKNV----LY 236
Query: 315 GVITIGQ---AIIFCHTRKTASWLSEKMSKDGHSVAVLSGELTVEQRIAVLDRFRVGLEK 371
V+T+GQ A++F +T++ L++ + G VA + G +T +R L + G +
Sbjct: 237 KVLTMGQPYLALVFANTKQKVDELTKFLQDQGLKVAKIHGGVTERERKRTLRQVEQGQYQ 296
Query: 372 VLITTNVLSRGIDVEQVTLVVNFDMPMDMNRKADCETYLHRIGRTGRFGKAGIAINLIDS 431
++ +++ +RG+D++ V+LVVN+++P D+ E +HRIGRTGR G +G A+ LI
Sbjct: 297 YVVASDLAARGLDIDGVSLVVNYEIPRDI------EFVIHRIGRTGRNGLSGHAVTLI-R 349
Query: 432 PQAMEICTDIEAHFGKKIQLLDIEDAEEIEK 462
+ M D+E G ++I++ E + +
Sbjct: 350 EEEMNRIEDLE-KMGVHFDFVEIKNGELVPR 379
>UniRef50_Q480Z7 Cluster: ATP-dependent RNA helicase, DEAD box
family; n=2; Alteromonadales|Rep: ATP-dependent RNA
helicase, DEAD box family - Colwellia psychrerythraea
(strain 34H / ATCC BAA-681) (Vibriopsychroerythus)
Length = 399
Score = 158 bits (383), Expect = 3e-37
Identities = 116/380 (30%), Positives = 196/380 (51%), Gaps = 19/380 (5%)
Query: 80 FEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMIAQSQSGTGKTAAFVLAML 139
F+A L +++ V G+ P+ IQ+ +P L+ +++ +Q+GTGKTAAF L ++
Sbjct: 4 FKAFSLLESIIDRVNLKGYKQPTPIQKECIPALING--NDLLGIAQTGTGKTAAFSLPII 61
Query: 140 SRVDSNK-----NYPQVLCLSPTYELAIQTGEVAAKMAKFCP-EIKLKYAVRGEELPRGS 193
++ NK + L L+PT ELA Q + + + K+ Y G + S
Sbjct: 62 NKFGRNKIDIKAKSTRSLILTPTRELASQIMQNIDDYSDGLGLKTKVVYGGVGRQAQVDS 121
Query: 194 -KITDHILIGTPGKMFDWGVKFGMFDMGKIKVFVLDEADVMINRQGHQDQCIRIHKCLPS 252
++ IL+ TPG++ D ++ G + ++VFVLDEAD M++ +D I K LP
Sbjct: 122 IELGLDILVATPGRLLDL-IETGDINFKALEVFVLDEADTMLDMGFFKDVQSIISK-LPK 179
Query: 253 TCQMMFFSATYGTAVMQFAEIIVSNPIIIRLLREEESLDNIKQYYVKCKSAEDKYRAICN 312
+ Q + FSAT + AE I+++P I++ E ++D + Q + +K + N
Sbjct: 180 SRQTLLFSATMPAEIEILAEAILTDPTKIQITAETVTIDLVNQSVYHLDKS-NKVPLLFN 238
Query: 313 IYGVITIGQAIIFCHTRKTASWLSEKMSKDGHSVAVLSGELTVEQRIAVLDRFRVGLEKV 372
I + +IFC T+ A + + + K + A L T R L F+ +V
Sbjct: 239 ILTKADYEKVLIFCKTKYGADIIVKALEKASITAASLHSGKTQAVREEALQNFKDSTLRV 298
Query: 373 LITTNVLSRGIDVEQVTLVVNFDMPMDMNRKADCETYLHRIGRTGRFGKAGIAINLIDSP 432
L+ T+V +RGIDV+ +TLV+N+++P D Y+HRIGRT R GK+G+AI+
Sbjct: 299 LVATDVAARGIDVDNITLVINYNLP------EDPRNYIHRIGRTARAGKSGMAISFAVEN 352
Query: 433 QAMEICTDIEAHFGKKIQLL 452
++ T+IE G+ I ++
Sbjct: 353 DIRQL-TNIENSIGQVIPVV 371
>UniRef50_A1FEC3 Cluster: DEAD/DEAH box helicase-like; n=21;
Gammaproteobacteria|Rep: DEAD/DEAH box helicase-like -
Pseudomonas putida W619
Length = 621
Score = 158 bits (383), Expect = 3e-37
Identities = 118/358 (32%), Positives = 185/358 (51%), Gaps = 20/358 (5%)
Query: 80 FEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMIAQSQSGTGKTAAFVLAML 139
F L LLK V + F P+ +Q A+P LA +++ +Q+G+GKTAAFVL +L
Sbjct: 184 FSQFALHERLLKAVAELKFVEPTPVQAAAIP--LALQGRDLRVTAQTGSGKTAAFVLPLL 241
Query: 140 SRVDSNKNYP---QVLCLSPTYELAIQTGEVAAKMAKFCPEIKLKYAVRGEELPRGS--- 193
+R+ K + L L PT ELA QT + ++F IK GE+ +
Sbjct: 242 NRLVDLKGARVEIRALILLPTRELAQQTLKQVQLFSQFT-YIKAGLVTGGEDFKEQAAML 300
Query: 194 -KITDHILIGTPGKMFDWGVKFGMFDMGKIKVFVLDEADVMINRQGHQDQCIRIHKCLPS 252
K+ D +LIGTPG++ + + G D+ ++V +LDEAD M++ G + R+ K +
Sbjct: 301 RKVPD-VLIGTPGRLLEQ-LNAGNLDLSHVQVMILDEADRMLD-MGFAEDMERLCKECEN 357
Query: 253 TCQMMFFSATYGTAVMQ-FAEIIVSNPIIIRLLREEESLDNIKQYYVKCKSAEDKYRAIC 311
Q + FSAT G A ++ ++ +P + L + + +Q + + K +
Sbjct: 358 REQTLLFSATTGGAALRDIIGKVLKDPEHLMLNSVSQLAEGTRQQVITADHDQHKEAIVQ 417
Query: 312 NIYGVITIGQAIIFCHTRKTASWLSEKMSKDGHSVAVLSGELTVEQRIAVLDRFRVGLEK 371
+ +AIIF +TR A + + VL GE + R ++RF+ G K
Sbjct: 418 WLLANEKFDKAIIFTNTRVLADRIYGHLVAKDVKAFVLHGEKDQKDRKLAIERFKQGSSK 477
Query: 372 VLITTNVLSRGIDVEQVTLVVNFDMPMDMNRKADCETYLHRIGRTGRFGKAGIAINLI 429
VL+ T+V +RG+D++ + LV+NFDMP R D Y+HRIGRTGR G G+AI+LI
Sbjct: 478 VLVATDVAARGLDIDGLDLVINFDMP----RSGD--EYVHRIGRTGRAGGEGLAISLI 529
>UniRef50_UPI0000498CE0 Cluster: DEAD/DEAH box helicase; n=1;
Entamoeba histolytica HM-1:IMSS|Rep: DEAD/DEAH box
helicase - Entamoeba histolytica HM-1:IMSS
Length = 440
Score = 157 bits (382), Expect = 4e-37
Identities = 113/382 (29%), Positives = 195/382 (51%), Gaps = 35/382 (9%)
Query: 79 TFEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMIAQSQSGTGKTAAFVLAM 138
+F+ L ++L G+ MG+ PS+IQ A+P +L +N++ QSQSG+GKT AF+L+
Sbjct: 26 SFQECKLNEDILDGINGMGYITPSQIQSYAIPIILKG--KNLVMQSQSGSGKTMAFLLST 83
Query: 139 LSRVDSNKNYPQVLCLSPTYELAIQTGEVAAKMAKFCPEIKLKYAVRGEELPRGSKITDH 198
L ++ + QV+ + T ELA QT + ++ + ++ + G E I
Sbjct: 84 LQLINRKDPFCQVIIIVNTRELARQTASIFDELTELMDDVTRLLCLPGYE----GDIKSQ 139
Query: 199 ILIGTPG---KMFDWGVKFGMFDMGKIKVFVLDEADVMINRQ---------GHQDQCIRI 246
LIGT K + G++ F +K V+DEAD ++N + +Q C I
Sbjct: 140 YLIGTASSIYKTIEIGLQTNEFKPENVKFLVIDEADAILNTKLSPGSNGLSVYQSVC-EI 198
Query: 247 HKCLPSTCQMMFFSATYGTAVMQFAEIIVSNPIIIRLLREEESLDNIKQYYVKCKSAEDK 306
K +P Q + SATY + + + N L+R+ E I Q Y+ S++ +
Sbjct: 199 KKIIPLNVQTILVSATYPDQMSKLETQFIGNNASHILIRQNEVPLTICQLYMNIPSSQ-R 257
Query: 307 YRAICNIYGVITI-----------GQAIIFCHTRKTASWLSEKMSKDG-HSVAVLSGELT 354
+ I +I+ I + GQA++F + + A L ++K+ ++ +++G
Sbjct: 258 PKVILDIFKQIILSSQDESVLSGCGQAVVFTNRKTEAIDLMNYLNKNNIQTLVLMAGNND 317
Query: 355 VEQRIAVLDRFRVGLEKVLITTNVLSRGIDVEQVTLVVNFDMPMDM-NRKADCETYLHRI 413
+ R V+D FR LITT+V++RGID+ V V+N ++P+ ++ D TY+HRI
Sbjct: 318 I--RDEVIDAFRNHKINFLITTDVMARGIDILDVNFVINLELPLIYPSQNIDITTYIHRI 375
Query: 414 GRTGRFGKAGIAINLIDSPQAM 435
GRTGR G G+A+ +++ Q +
Sbjct: 376 GRTGRIGYKGLALTFLEANQEL 397
>UniRef50_A2AAP7 Cluster: DEAD (Asp-Glu-Ala-Asp) box polypeptide 48;
n=5; Fungi/Metazoa group|Rep: DEAD (Asp-Glu-Ala-Asp) box
polypeptide 48 - Mus musculus (Mouse)
Length = 299
Score = 157 bits (382), Expect = 4e-37
Identities = 93/284 (32%), Positives = 164/284 (57%), Gaps = 23/284 (8%)
Query: 79 TFEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMIAQSQSGTGKTAAFVLAM 138
TF+ + L+ +LL+G+YA GF PS IQ+ A+ ++ +++IAQSQSGTGKTA F +++
Sbjct: 39 TFDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKG--RDVIAQSQSGTGKTATFSVSV 96
Query: 139 LSRVDSNKNYPQVLCLSPTYELAIQTGEVAAKMAKFCPEIKLKYAVRGEELPRGSKITDH 198
L CL LA+ G+ C + GE++ R H
Sbjct: 97 LQ------------CLDIQGLLAL--GDYMNVQCHAC----IGGTNVGEDI-RKLDYGQH 137
Query: 199 ILIGTPGKMFDWGVKFGMFDMGKIKVFVLDEADVMINRQGHQDQCIRIHKCLPSTCQMMF 258
++ GTPG++FD ++ IK+ VLDEAD M+N+ G ++Q +++ LP Q++
Sbjct: 138 VVAGTPGRVFDM-IRRRSLRTRAIKMLVLDEADEMLNK-GFKEQIYDVYRYLPPATQVVL 195
Query: 259 FSATYGTAVMQFAEIIVSNPIIIRLLREEESLDNIKQYYVKCKSAEDKYRAICNIYGVIT 318
SAT +++ +++PI I + R+E +L+ IKQ++V + E K+ +C++Y +T
Sbjct: 196 ISATLPHEILEMTNKFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLT 255
Query: 319 IGQAIIFCHTRKTASWLSEKMSKDGHSVAVLSGELTVEQRIAVL 362
I QA+IFC+T++ WL+EKM + +V+ + G++ ++R +++
Sbjct: 256 ITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIM 299
>UniRef50_Q6F0U0 Cluster: ATP-dependent RNA helicase; n=1;
Mesoplasma florum|Rep: ATP-dependent RNA helicase -
Mesoplasma florum (Acholeplasma florum)
Length = 666
Score = 157 bits (382), Expect = 4e-37
Identities = 106/386 (27%), Positives = 193/386 (50%), Gaps = 13/386 (3%)
Query: 79 TFEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMIAQSQSGTGKTAAFVLAM 138
TF+ L L +L + FN ++IQ A+P L +N+ +S +GTGKTA+FVL +
Sbjct: 2 TFKELQLSDKVLVALEKANFNEATEIQARAIPLFLEG--KNIFGKSSTGTGKTASFVLPI 59
Query: 139 LSRVDSNKNYPQVLCLSPTYELAIQTGEVAAKMAKFCPEIKLKYAVRGEEL-PRGSKITD 197
L +++ NK Q + ++PT ELA+Q + + + G ++ + ++ D
Sbjct: 60 LEKIEPNKRRVQAVIMAPTRELAMQIVNQIRIFGSRIENLVIAPLIGGADMRDQIKRLKD 119
Query: 198 -HILIGTPGKMFDWGVKFGMFDMGKIKVFVLDEADVMINRQGHQDQCIRIHKCLPSTCQM 256
I++GTPG++ D + + ++ +LDEAD M+ + G +++ + + + Q+
Sbjct: 120 SQIVVGTPGRVNDH-LNRKTLKLDDVRTIILDEADEML-KMGFKNEIDALFERVSPDVQI 177
Query: 257 MFFSATYGTAVMQFAEIIVSNPIIIRLLREEESLDNIKQYYVKCKSAEDKYRAICNIYGV 316
FSAT VMQ A ++ +I + + E NI ++ K K I ++
Sbjct: 178 GLFSATTSPKVMQIANDYMNEYDVIEIENQIEVNANITNTFIFTKGFS-KEDLIVKVFKK 236
Query: 317 ITIGQAIIFCHTRKTASWLSEKMSKDGHSVAVLSGELTVEQRIAVLDRFRVGLEKVLITT 376
+AI+F +T+ +++ + G V++G+ QR + +FR VL+ T
Sbjct: 237 HKPKRAIVFSNTKNHTDKIADNLEAAGIRAIVINGDKRQSQRSRAIAKFRNNEISVLVAT 296
Query: 377 NVLSRGIDVEQVTLVVNFDMPMDMNRKADCETYLHRIGRTGRFGKAGIAINLIDSPQAME 436
+V++RGID+ V V+N+D+ M + E ++HRIGRTGR G +I + + +
Sbjct: 297 DVVARGIDITGVDYVINYDVSM------EDEHFVHRIGRTGRNNTKGDSITFVQNQNVLR 350
Query: 437 ICTDIEAHFGKKIQLLDIEDAEEIEK 462
IE +F I + I + E++K
Sbjct: 351 QIKGIEKNFNLIIDEMQISEYGEVDK 376
>UniRef50_Q30P62 Cluster: DEAD/DEAH box helicase-like; n=1;
Thiomicrospira denitrificans ATCC 33889|Rep: DEAD/DEAH
box helicase-like - Thiomicrospira denitrificans (strain
ATCC 33889 / DSM 1351)
Length = 411
Score = 157 bits (382), Expect = 4e-37
Identities = 118/360 (32%), Positives = 188/360 (52%), Gaps = 21/360 (5%)
Query: 80 FEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMIAQSQSGTGKTAAFVLAML 139
F L L N+L+ + GF P+ IQE +P +L +++A++Q+G+GK+A+F+L +L
Sbjct: 3 FSKLGLSQNILQALKQNGFTKPTPIQERVIPLVLER--HDIMAKAQTGSGKSASFILPIL 60
Query: 140 SRV--DS--NKNYPQVLCLSPTYELAIQTGEVAAKMAKFCPEIKLKYAVRG-----EELP 190
+ DS K +VL L+PT EL Q E F + V G E+L
Sbjct: 61 ELLSRDSYEGKAKIKVLVLTPTRELTQQIVEAFNTFGAFMSKKPKVVGVIGGEGIGEQLF 120
Query: 191 RGSKITDHILIGTPGKMFDWGVKFGMFDMGKIKVFVLDEADVMINRQGHQDQCIRIHKCL 250
K D IL+ T G+ D K M + + FVLDEAD M++ G ++ I + L
Sbjct: 121 NIQKGCD-ILVATSGRFLDILSKKQMI-LSHVDFFVLDEADKMLDF-GFAEELELILEAL 177
Query: 251 PSTCQMMFFSATYGTAVMQFAEIIVSNPIIIRLLREEESLDNIKQYYVKCKSAEDKYRAI 310
Q + FSATY ++ A I+ NPI + + EE +++++ Q + S E++ +
Sbjct: 178 GQKRQNLLFSATYPPKMLFIASKIMQNPIEVSVEDEEPTVESVVQRAILV-SRENRAPLL 236
Query: 311 CNIYGVITIGQAIIFCHTRKTASWLSEKMSKDGHSVAVLSGELTVEQRIAVLDRFRVGLE 370
++ I+F +++ A ++ K K G S G+L E R L+ F+
Sbjct: 237 RHLLKSEKYELVIVFMSSKRAADNIAAKFRKHGFSADSFHGDLHQEDRNYTLEEFKTKKL 296
Query: 371 KVLITTNVLSRGIDVEQVTLVVNFDMPMDMNRKADCETYLHRIGRTGRFGKAGIAINLID 430
++L T+++SRG+D+ +T V+NFD+P AD Y+HRIGRT R GKAG+AI+ ID
Sbjct: 297 QILFATDLVSRGLDINDITCVINFDLP---RSSAD---YIHRIGRTARAGKAGMAISFID 350
>UniRef50_Q2S6I0 Cluster: ATP-dependent RNA helicase; n=1;
Salinibacter ruber DSM 13855|Rep: ATP-dependent RNA
helicase - Salinibacter ruber (strain DSM 13855)
Length = 478
Score = 157 bits (382), Expect = 4e-37
Identities = 119/375 (31%), Positives = 195/375 (52%), Gaps = 24/375 (6%)
Query: 62 DIEIQRKDPNSPLYSVKTFEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMI 121
++ + ++P+ PL V E L ++ + V+A G+ +Q A+P L +++I
Sbjct: 28 EVGSELREPDPPLDEVTVDE---LSGHMEQAVHAAGWTELMDVQRKAIPYTLDG--RDLI 82
Query: 122 AQSQSGTGKTAAFVLAMLSRVDSNKNYPQVLCLSPTYELAIQTGEVAAKMAKFCP----- 176
QSQ+G+GKT AF+L + V+ +K QVL L+PT ELA Q E +M P
Sbjct: 83 VQSQTGSGKTGAFLLPLFDLVNPDKEEQQVLILTPTRELARQIHEEFEQMKIATPRTNRM 142
Query: 177 EIKLKYAVRGEELPR--GSKITDHILIGTPGKMFDWGVKFGMFDMGKIKVFVLDEADVMI 234
E L Y G + P+ G K ++IGTPG++ D +K FD +++ VLDEAD M+
Sbjct: 143 EAVLIYGGVGYQ-PQIDGLKNGAQVVIGTPGRILDH-IKKDNFDASTLRMLVLDEADEML 200
Query: 235 NRQGHQDQCIRIHKCLPSTCQMMFFSATYGTAVMQFAEIIVSNPIIIRLLREEESLD-NI 293
+ G I + +P +SAT V A + +P + L ++ S++ N
Sbjct: 201 S-MGFYPDMKDIVEHVPGDRVSYMYSATMPPKVRSVAREFLDDPGFLSLSTDKVSVEENE 259
Query: 294 KQYYVKCKSAEDKYRAICNIYGVITIGQAIIFCHTRKTASWLSEKMSKDGHSVAVLSGEL 353
+YY+ + DK R + + + A+IF +T++ S+L++ +S G+ + +SG+L
Sbjct: 260 YRYYLV--NPMDKDRVMAQLLELEEPESALIFANTKREVSYLNKFLSNKGYDIDEMSGDL 317
Query: 354 TVEQRIAVLDRFRVGLEKVLITTNVLSRGIDVEQVTLVVNFDMPMDMNRKADCETYLHRI 413
+ R LDR R G ++L+ T+V +RGIDV ++ V +D+P D E +HR
Sbjct: 318 SQRDREEALDRLREGKLRLLVATDVAARGIDVSDLSHVFIYDVPQDH------EYIIHRS 371
Query: 414 GRTGRFGKAGIAINL 428
GRT R G+ G I L
Sbjct: 372 GRTARAGEEGTTIVL 386
>UniRef50_Q17BP5 Cluster: DEAD box ATP-dependent RNA helicase; n=2;
Culicidae|Rep: DEAD box ATP-dependent RNA helicase -
Aedes aegypti (Yellowfever mosquito)
Length = 1061
Score = 157 bits (382), Expect = 4e-37
Identities = 115/394 (29%), Positives = 192/394 (48%), Gaps = 20/394 (5%)
Query: 80 FEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMIAQSQSGTGKTAAFVLAML 139
F + L +L+G+ F PS IQ A+P LA +++ Q++SGTGKT F + +
Sbjct: 24 FSKMFLSEPVLRGLTRNNFTHPSPIQARAIP--LAKLGLDLLVQAKSGTGKTLVFTVLIT 81
Query: 140 SRVDSNKNYPQVLCLSPTYELAIQTGEVAAKMAKFCPEIKLKYAVRGEELPRGSKITDHI 199
+ + +PQ L + PT E+A+Q +V ++ P + K + G ++ + K
Sbjct: 82 ENHNPDVMFPQSLTVVPTREIAVQIEDVLNRIGYSVPNFRAKSFIGGLDISQDRKNLQSC 141
Query: 200 --LIGTPGKMFDWGVKFGMFDMGKIKVFVLDEADVMINRQGHQDQCIRIHKCLPSTCQMM 257
++GTPG++ + +K + + +IK+ VLDEAD +I + + +I K LP+ Q +
Sbjct: 142 SAVVGTPGRI-NHLIKSNVLNTSQIKILVLDEADSLITGS-LKPEVDQIVKMLPTKRQTV 199
Query: 258 FFSATY-GTAVMQFAEIIVSNPIIIRLLREEESLDNIKQYYVKCKSAED-------KYRA 309
SATY + + + I + +E L I+Q+ + A+D K
Sbjct: 200 VCSATYYNNRDRELLKYLNDKFIGVTPKKEVPVLHGIRQFVQELPEAKDNIKEMMAKIAE 259
Query: 310 ICNIYGVITIGQAIIFCHTRKTASWLSEKMSKDGHSVAVLSGELTVEQRIAVLDRFRVGL 369
+ I + GQ ++F +T+ A + + G V+ G R+ ++ +
Sbjct: 260 LNRILKKVPYGQCLVFANTQTKADTYCSYLGRAGWPTEVIRGGQEQRVRLKTVENLKEFR 319
Query: 370 EKVLITTNVLSRGIDVEQVTLVVNFDMPMDMNRKADCETYLHRIGRTGRFGKAGIAINLI 429
+VL T+V+SRGID E V LV+N D+P D + YLHRIGR GRFG IAI L+
Sbjct: 320 CRVLTATDVISRGIDAENVNLVINVDVPRDNS------VYLHRIGRAGRFGTQAIAITLV 373
Query: 430 DSPQAMEICTDIEAHFGKKIQLLDIEDAEEIEKI 463
S + M+ I G + AE++E+I
Sbjct: 374 SSSKEMDRFRKILQDIGGNDMFVYRLPAEKMEEI 407
>UniRef50_A6NSW7 Cluster: Putative uncharacterized protein; n=1;
Bacteroides capillosus ATCC 29799|Rep: Putative
uncharacterized protein - Bacteroides capillosus ATCC
29799
Length = 400
Score = 157 bits (381), Expect = 6e-37
Identities = 103/356 (28%), Positives = 183/356 (51%), Gaps = 13/356 (3%)
Query: 77 VKTFEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMIAQSQSGTGKTAAFVL 136
V + L L ++K + G+ + +Q A+P + +++IA++ +GTGKT AF +
Sbjct: 11 VVNYADLGLSAEVMKAIDKKGYVRATPVQAGAIPYFMEW--KDVIAKAPTGTGKTFAFGI 68
Query: 137 AMLSRVDSNKNYPQVLCLSPTYELAIQTGEVAAKMAKFCPEIKLKYAVRGEELPRG-SKI 195
M+ +D + Q L L+PT ELA+Q + + +F ++ G + + + +
Sbjct: 69 PMVEHIDPESDAVQALVLAPTRELALQIQDELRDLCEFKEGVRSVCLYGGAPIEKQITTL 128
Query: 196 TDH--ILIGTPGKMFDWGVKFGMFDMGKIKVFVLDEADVMINRQGHQDQCIRIHKCLPST 253
H I++ TPG++ D +K + K++ VLDEAD M++ G RI + S
Sbjct: 129 KKHPQIVVATPGRLMDH-MKRRTVKLDKVETVVLDEADRMLD-MGFIHDVTRILDQIKSR 186
Query: 254 CQMMFFSATYGTAVMQFAEIIVSNPIIIRLLREEESLDNIKQYYVKCKSAEDKYRAICNI 313
+ FSAT VM + + +P+ I + +EE+ +I+QY + + DK + +
Sbjct: 187 KNLGLFSATISREVMDISWVYQRDPVEIVVRPDEENKPDIQQYRIDLEGRGDKLETMVAL 246
Query: 314 YGVITIGQAIIFCHTRKTASWLSEKMSKDGHSVAVLSGELTVEQRIAVLDRFRVGLEKVL 373
+AI FC+T+ LS + G + + G++ R L FR G +VL
Sbjct: 247 LTHGGYERAIAFCNTKNMTDRLSGLLQMRGITAQAIHGDIQQRIREKTLQAFREGKMRVL 306
Query: 374 ITTNVLSRGIDVEQVTLVVNFDMPMDMNRKADCETYLHRIGRTGRFGKAGIAINLI 429
+ T+V +RG+D++ V +V N+D+P ++ E Y+HRIGRTGR + G+A +L+
Sbjct: 307 VATDVAARGLDIDDVDVVFNYDVPDEI------EYYIHRIGRTGRAKRHGVAYSLV 356
>UniRef50_P21507 Cluster: ATP-dependent RNA helicase srmB; n=82;
Proteobacteria|Rep: ATP-dependent RNA helicase srmB -
Escherichia coli (strain K12)
Length = 444
Score = 157 bits (381), Expect = 6e-37
Identities = 110/364 (30%), Positives = 181/364 (49%), Gaps = 19/364 (5%)
Query: 76 SVKTFEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMIAQSQSGTGKTAAFV 135
+V TF L L +LL+ + GF P+ IQ A+P L ++++ + +GTGKTAA++
Sbjct: 2 TVTTFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDG--RDVLGSAPTGTGKTAAYL 59
Query: 136 LAMLSRV----DSNKNYPQVLCLSPTYELAIQTGEVAAKMAKFCPEIKLKYAVRGEELPR 191
L L + P++L L+PT ELA+Q + A ++AK + + G
Sbjct: 60 LPALQHLLDFPRKKSGPPRILILTPTRELAMQVSDHARELAKHT-HLDIATITGGVAYMN 118
Query: 192 GSKI---TDHILIGTPGKMFDWGVKFGMFDMGKIKVFVLDEADVMINRQGHQDQCIRIHK 248
+++ I++ T G++ + +K FD ++ +LDEAD M++ G I
Sbjct: 119 HAEVFSENQDIVVATTGRLLQY-IKEENFDCRAVETLILDEADRMLD-MGFAQDIEHIAG 176
Query: 249 CLPSTCQMMFFSATY-GTAVMQFAEIIVSNPIIIRLLREEESLDNIKQYYVKCKSAEDKY 307
Q + FSAT G A+ FAE ++ +P+ + I Q+Y + E K
Sbjct: 177 ETRWRKQTLLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKT 236
Query: 308 RAICNIYGVITIGQAIIFCHTRKTASWLSEKMSKDGHSVAVLSGELTVEQRIAVLDRFRV 367
+ ++ ++I+F R+ L+ + + G + L GE+ +R + R
Sbjct: 237 ALLVHLLKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTE 296
Query: 368 GLEKVLITTNVLSRGIDVEQVTLVVNFDMPMDMNRKADCETYLHRIGRTGRFGKAGIAIN 427
G VL+ T+V +RGID+ V+ V NFDMP R D TYLHRIGRT R G+ G AI+
Sbjct: 297 GRVNVLVATDVAARGIDIPDVSHVFNFDMP----RSGD--TYLHRIGRTARAGRKGTAIS 350
Query: 428 LIDS 431
L+++
Sbjct: 351 LVEA 354
>UniRef50_Q01PH0 Cluster: DEAD/DEAH box helicase domain protein;
n=1; Solibacter usitatus Ellin6076|Rep: DEAD/DEAH box
helicase domain protein - Solibacter usitatus (strain
Ellin6076)
Length = 422
Score = 157 bits (380), Expect = 8e-37
Identities = 111/365 (30%), Positives = 188/365 (51%), Gaps = 22/365 (6%)
Query: 80 FEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMIAQSQSGTGKTAAFVLAML 139
F L L L + F P+ IQ A+ LA ++++A +Q+GTGKT AF+L +
Sbjct: 4 FSELPLSAQLKSNLAKNNFTEPTPIQSLAIEPALAG--KDIVATAQTGTGKTLAFLLPTI 61
Query: 140 SRVDSNKNYPQV--LCLSPTYELAIQTGEVAAKMAKFCPEIKLKYAVRGEELPRGSKITD 197
+ + P V L L+PT ELA+Q E ++A+ I+ AV G L S++ D
Sbjct: 62 QLLSTEPRQPGVRALILTPTRELALQINEALLQIARGTG-IRAAVAVGG--LNERSQLRD 118
Query: 198 -----HILIGTPGKMFDWGVKFGMFDMGKIKVFVLDEADVMINRQGHQDQCIRIHKCLPS 252
+I++ TPG+++D+ + G+ ++ +++ +LDE+D M++ G RI +P+
Sbjct: 119 IRGGANIVVATPGRLYDF-MSRGLINLTTVRMLILDESDRMLD-MGFLPTIKRIIAAMPA 176
Query: 253 TCQMMFFSATYGTAVMQFAEIIVSNPIIIRLLREEESLDNIKQYYVKCKSAEDKYRAICN 312
Q + FSAT ++V Q E V N + I L + + + + + +D+ +
Sbjct: 177 ERQTLLFSATLESSVKQLVETHVRNAVRIELGSISKPSEQVDLHLYEVD--QDRKFGLLE 234
Query: 313 IYGVITIGQAIIFCHTRKTASWLSEKMSKDGHSVAVLSGELTVEQRIAVLDRFRVGLEKV 372
+ G ++F T+ A L++K+++ G A + G+ + QRI L F+ G +V
Sbjct: 235 MMLREEQGSFLVFARTKHGADKLAKKLAQSGFKSAAIHGDRSQNQRIQALKGFQEGYYRV 294
Query: 373 LITTNVLSRGIDVEQVTLVVNFDMPMDMNRKADCETYLHRIGRTGRFGKAGIAINLIDSP 432
L+ T+V +RGI VE ++ VVNFD+P E ++HR+GRTGR G G A
Sbjct: 295 LVATDVAARGIHVEGISHVVNFDLPQVP------EDFIHRVGRTGRAGAKGTASTFATRS 348
Query: 433 QAMEI 437
+ EI
Sbjct: 349 ERSEI 353
>UniRef50_A3WD13 Cluster: DNA and RNA helicase; n=2;
Alphaproteobacteria|Rep: DNA and RNA helicase -
Erythrobacter sp. NAP1
Length = 484
Score = 157 bits (380), Expect = 8e-37
Identities = 119/390 (30%), Positives = 202/390 (51%), Gaps = 26/390 (6%)
Query: 80 FEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMIAQSQSGTGKTAAFVLAML 139
F L L +L+ + G++ P+ IQE A+P +L ++++ +Q+GTGKTAAF+L +
Sbjct: 4 FSDLGLSQPVLQALDLKGYSTPTPIQEQAIPPVLEG--RDLLGIAQTGTGKTAAFMLPSI 61
Query: 140 SRV-DSNKNYP----QVLCLSPTYELAIQTGEVAAKMAKFCPEIKLKYAVRGEELPRG-S 193
R+ +++ P ++L L+PT EL Q +AK +K++ V G + + +
Sbjct: 62 DRLREADNRIPFKSCRMLVLAPTRELVSQIA-ASAKDYGALAGLKVQSIVGGTSVNKDRN 120
Query: 194 KI---TDHILIGTPGKMFDWGVKFGMFDMGKIKVFVLDEADVMINRQGHQDQCIRIHKCL 250
K+ TD ILI TPG++ D + F++G ++V VLDEAD M++ G RI + +
Sbjct: 121 KLHRGTD-ILIATPGRLLDL-IDQKAFNLGSVEVLVLDEADQMLDL-GFVHALRRISQLV 177
Query: 251 PSTCQMMFFSATYGTAVMQFAEIIVSNPIIIRLLREEESLDNIKQYYVKCKSAEDKYRAI 310
P Q +FFSAT A+ + +NP+ + + E + + I QY + E +
Sbjct: 178 PKERQTLFFSATMPKAIKELVSGYCNNPVQVSVTPESTTAERIDQYLFMVQQDEKQSLLE 237
Query: 311 CNIYGVITIG----QAIIFCHTRKTASWLSEKMSKDGHSVAVLSGELTVEQRIAVLDRFR 366
+ G + + +IF T+ A + +K+S+ G + G + QR LD FR
Sbjct: 238 LILSGRHKVPGEFERILIFTRTKHGADRVVKKLSRAGIPANAIHGNKSQPQRQRALDEFR 297
Query: 367 VGLEKVLITTNVLSRGIDVEQVTLVVNFDMPMDMNRKADCETYLHRIGRTGRFGKAGIAI 426
G +L+ T+V +RGID+ V+ V+N+++P E Y+HRIGRT R GK G+AI
Sbjct: 298 RGKTMILVATDVAARGIDIPGVSHVLNYELPNVP------EQYVHRIGRTARAGKDGVAI 351
Query: 427 NLIDSPQAMEICTDIEAHFGKKIQLLDIED 456
+ + DI G ++ L++ +
Sbjct: 352 AFCAEDERAYL-KDIRKTTGAELDRLNLPE 380
>UniRef50_Q5BF42 Cluster: Putative uncharacterized protein; n=1;
Emericella nidulans|Rep: Putative uncharacterized protein
- Emericella nidulans (Aspergillus nidulans)
Length = 1676
Score = 157 bits (380), Expect = 8e-37
Identities = 108/387 (27%), Positives = 195/387 (50%), Gaps = 19/387 (4%)
Query: 66 QRKDPNSPLYSVK-TFEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMIAQS 124
++ D ++ S K +F+ +L +L+G+ A+ F P+ IQ+ +P L ++++ +
Sbjct: 777 EKTDEDAATNSAKRSFQEFNLSRPILRGLAAVNFTNPTPIQQKTIPVALLG--KDIVGSA 834
Query: 125 QSGTGKTAAFVLAMLSRVDSN-KNYP--QVLCLSPTYELAIQTGEVAAKMAKFCPEIKLK 181
+G+GKTAAFV+ +L R+ + P +V L PT ELA+Q VA K+A + +I
Sbjct: 835 VTGSGKTAAFVVPILERLLFRPRKVPTSRVAILMPTRELAVQCYNVATKLATYT-DITFC 893
Query: 182 YAVRGEELPRGSKITDH---ILIGTPGKMFDWGVKFGMFDMGKIKVFVLDEADVMINRQG 238
V G L + ++I TPG+ D F + +++ VLDEAD M+ G
Sbjct: 894 QLVGGFSLREQENVLKKRPDVIIATPGRFIDHMRNSASFTVDTLEILVLDEADRMLE-DG 952
Query: 239 HQDQCIRIHKCLPSTCQMMFFSATYGTAVMQFAEIIVSNPIIIRLLREEESLDNIKQYYV 298
D+ I +P + Q M FSAT +V + + ++ P+ + + ++ + + Q +V
Sbjct: 953 FADELNEILTTIPKSRQTMLFSATMTDSVDKLIRVGLNRPVRLMVDTKKNTAVTLVQEFV 1012
Query: 299 KCKSAEDKYRA--ICNIYGVITIGQAIIFCHTRKTASWLSEKMSKDGHSVAVLSGELTVE 356
+ + + R + ++ + G+ I+F +K A + G A L G ++ E
Sbjct: 1013 RLRPGREDKRLGYLLHLCKEVYTGRVIVFFRQKKEAHRVRIVFGLLGLKAAELHGSMSQE 1072
Query: 357 QRIAVLDRFRVGLEKVLITTNVLSRGIDVEQVTLVVNFDMPMDMNRKADCETYLHRIGRT 416
QRI ++ FR G L+ T++ SRG+D++ V V+N++ P E Y+HR+GRT
Sbjct: 1073 QRIKSVESFRDGNVNFLLATDLASRGLDIKGVETVINYEAPQSH------EIYVHRVGRT 1126
Query: 417 GRFGKAGIAINLIDSPQAMEICTDIEA 443
R G++G A + P + ++A
Sbjct: 1127 ARAGRSGRACTIAAEPDRKVVKAAVKA 1153
>UniRef50_Q9PA24 Cluster: ATP-dependent RNA helicase rhlB; n=87;
Proteobacteria|Rep: ATP-dependent RNA helicase rhlB -
Xylella fastidiosa
Length = 543
Score = 157 bits (380), Expect = 8e-37
Identities = 122/395 (30%), Positives = 209/395 (52%), Gaps = 33/395 (8%)
Query: 71 NSPLYSVKTFEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMIAQSQSGTGK 130
+ PL ++ F +L L P LL G+ GF + IQ LP LA +++ Q+Q+GTGK
Sbjct: 3 DKPLTNLN-FSSLDLHPALLTGLTRAGFTLCTPIQALTLPVALAG--RDIAGQAQTGTGK 59
Query: 131 TAAFVLAMLSR-------VDSNKNYPQVLCLSPTYELAIQTGEVAAKMAKFCPEIKLKYA 183
T AF++ +++R V+ N P+ L L+PT ELAIQ A K F + L++A
Sbjct: 60 TLAFLVVVVNRLLSRPGLVNRNPEDPRALILAPTRELAIQIYNDAVK---FGGNLGLRFA 116
Query: 184 V--RGEELPRGSKITDH---ILIGTPGKMFDWGVKFGMFDMGKIKVFVLDEADVMINRQG 238
+ G + + ++ ++I TPG++ D+ + + + ++ VLDEAD M +
Sbjct: 117 LIYGGVDYDKQREMLRKGADVVIATPGRLIDYLKQHEVVSLRVCEICVLDEADRMFDLGF 176
Query: 239 HQDQCIR-IHKCLPSTC--QMMFFSATYGTAVMQFAEIIVSNPIIIRLLREEESLDNIK- 294
+D IR I + LP C Q + FSAT V++ A ++ P +L+ E E++ +
Sbjct: 177 IKD--IRFILRRLPERCSRQTLLFSATLSHRVLELAYEYMNEPE--KLVAETETVTTTRV 232
Query: 295 QYYVKCKSAEDKYRAICNIYGVITIGQAIIFCHTRKTASWLSEKMSKDGHSVAVLSGELT 354
+ + + E+K + + + ++F +T+ ++ + + G+ V VLSG++
Sbjct: 233 RQRIYFPAEEEKIPLLLGLLSRSEGMRTMVFVNTKVFVEGVARALDEAGYRVGVLSGDVP 292
Query: 355 VEQRIAVLDRFRVGLEKVLITTNVLSRGIDVEQVTLVVNFDMPMDMNRKADCETYLHRIG 414
+R +L+RF+ G ++L+ T+V +RG+ ++ V V N+D+P D E Y+HRIG
Sbjct: 293 QRKRETLLNRFQKGQLEILVATDVAARGLHIDGVNYVYNYDLPF------DAEDYVHRIG 346
Query: 415 RTGRFGKAGIAINLIDSPQAMEICTDIEAHFGKKI 449
RT R G G AI+ AM + DIEA+ +KI
Sbjct: 347 RTARLGADGDAISFACERYAMSL-PDIEAYIEQKI 380
>UniRef50_Q09903 Cluster: ATP-dependent RNA helicase drs1; n=1;
Schizosaccharomyces pombe|Rep: ATP-dependent RNA
helicase drs1 - Schizosaccharomyces pombe (Fission
yeast)
Length = 754
Score = 157 bits (380), Expect = 8e-37
Identities = 110/358 (30%), Positives = 187/358 (52%), Gaps = 18/358 (5%)
Query: 79 TFEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMIAQSQSGTGKTAAFVLAM 138
+F++++L +LKG+ +GF P++IQ+ +P L ++++ + +G+GKTAAF++ +
Sbjct: 260 SFQSMNLSRPILKGLSNLGFEVPTQIQDKTIPLALLG--KDIVGAAVTGSGKTAAFIVPI 317
Query: 139 LSRVDSN-KNYP--QVLCLSPTYELAIQTGEVAAKMAKFCPEIKLKYAVRGEELP---RG 192
L R+ K P +VL L PT ELA+Q VA K+A F +I + + G L +
Sbjct: 318 LERLLYRPKKVPTTRVLILCPTRELAMQCHSVATKIASFT-DIMVCLCIGGLSLKLQEQE 376
Query: 193 SKITDHILIGTPGKMFDWGVKFGMFDMGKIKVFVLDEADVMINRQGHQDQCIRIHKCLPS 252
+ I+I TPG+ D F + I++ V+DEAD M+ G D+ I + P
Sbjct: 377 LRKRPDIVIATPGRFIDHMRNSQGFTVENIEIMVMDEADRMLE-DGFADELNEIIQACPK 435
Query: 253 TCQMMFFSATYGTAVMQFAEIIVSNPIIIRLLREEESLDNIKQYYVKCKSAEDKYRAICN 312
+ Q M FSAT V + ++ P+ + + ++ + + Q +V+ + + R
Sbjct: 436 SRQTMLFSATMTDKVDDLIRLSLNRPVRVFVDNKKTTAKLLTQEFVRVRPQRELLRPAML 495
Query: 313 IYGVITI--GQAIIFCHTRKTASWLSEKMSKDGHSVAVLSGELTVEQRIAVLDRFRVGLE 370
IY + + IIF ++ A + + + G L+ EQR+ L+ FR G
Sbjct: 496 IYLCKELFHRRTIIFFRSKAFAHKMRVIFGLLSLNATEIHGSLSQEQRVRALEDFRDGKC 555
Query: 371 KVLITTNVLSRGIDVEQVTLVVNFDMPMDMNRKADCETYLHRIGRTGRFGKAGIAINL 428
L+ T+V SRGID++ + +V+N++ P A E YLHR+GRT R G++G AI L
Sbjct: 556 NYLLATDVASRGIDIKGIEVVINYEAP------ATHEVYLHRVGRTARAGRSGRAITL 607
>UniRef50_Q4V836 Cluster: MGC114699 protein; n=9; Deuterostomia|Rep:
MGC114699 protein - Xenopus laevis (African clawed frog)
Length = 758
Score = 156 bits (379), Expect = 1e-36
Identities = 111/359 (30%), Positives = 182/359 (50%), Gaps = 18/359 (5%)
Query: 79 TFEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMIAQSQSGTGKTAAFVLAM 138
TF+ ++L LLK + AM F P+ IQ+ +P L +++ A + +GTGKTAAF+L +
Sbjct: 182 TFQDMNLSRPLLKAISAMSFTQPTPIQKACIPVGLLG--KDICACAATGTGKTAAFMLPV 239
Query: 139 LSR-VDSNKNYP--QVLCLSPTYELAIQTGEVAAKMAKFCPEIKLKYAVRGEELPRGS-- 193
L R + + P +VL L PT EL IQ V ++A+F E+ AV G ++
Sbjct: 240 LERLIYKPREAPVTRVLVLVPTRELGIQVHAVTRQLAQFT-EVTTCLAVGGLDVKTQEAA 298
Query: 194 -KITDHILIGTPGKMFDWGVKFGMFDMGKIKVFVLDEADVMINRQGHQDQCIRIHKCLPS 252
+ +LI TPG++ D F + I+V +LDEAD M++ ++Q I +
Sbjct: 299 LRSGPDVLIATPGRLIDHLHNCPSFSLNCIEVLILDEADRMLDEY-FEEQMKEIIRLCSH 357
Query: 253 TCQMMFFSATYGTAVMQFAEIIVSNPIIIRLLREEESLDNIKQYYVKCKSAE--DKYRAI 310
Q + FSAT V A + + NP+ I + + ++Q +V+ + D+
Sbjct: 358 QRQTLLFSATMSEEVKDLASVSLRNPVRIFVNSNTDVAPFLRQEFVRIRPNREGDREAVA 417
Query: 311 CNIYGVITIGQAIIFCHTRKTASWLSEKMSKDGHSVAVLSGELTVEQRIAVLDRFRVGLE 370
C + ++F T+K A + + G V L G L+ QR+ L RF+
Sbjct: 418 CALLTRTFQDHVMLFTQTKKQAHRMHILLGLMGLQVGELHGNLSQTQRLEALRRFKDEQI 477
Query: 371 KVLITTNVLSRGIDVEQVTLVVNFDMPMDMNRKADCETYLHRIGRTGRFGKAGIAINLI 429
+L+ T+V +RG+D++ V V+N MP + Y+HR+GRT R GKAG +++L+
Sbjct: 478 DILVATDVAARGLDIDGVKTVINLTMP------GTVKHYVHRVGRTARAGKAGRSVSLV 530
>UniRef50_Q2YZZ9 Cluster: Putative uncharacterized protein; n=1;
uncultured candidate division OP8 bacterium|Rep:
Putative uncharacterized protein - uncultured candidate
division OP8 bacterium
Length = 453
Score = 156 bits (379), Expect = 1e-36
Identities = 118/381 (30%), Positives = 191/381 (50%), Gaps = 17/381 (4%)
Query: 80 FEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMIAQSQSGTGKTAAFVLAML 139
F +LHL P LLK + +GF P+ IQ A+P ++ ++++A + +G+GKTAAF+L +L
Sbjct: 3 FSSLHLHPTLLKALKELGFPRPTPIQADAIPPAMSG--RDVMASAVTGSGKTAAFLLPIL 60
Query: 140 SR-VDSNKNYPQVLCLSPTYELAIQTGEVAAKMAKFCPEIKLKYAVRGEEL-PRGSKITD 197
+ +D + + L ++PT ELA Q E +A P I G + P+
Sbjct: 61 HQLIDRPRGTTRALVITPTRELAAQILEDLNDLAVHTP-ISAAAVFGGVSIRPQEHAFRR 119
Query: 198 --HILIGTPGKMFDWGVKFGMFDMGKIKVFVLDEADVMINRQGHQDQCIRIHKCLPSTCQ 255
+LIGTPG++ D + + ++ VLDEAD M++ G RI K +P+ Q
Sbjct: 120 GVDVLIGTPGRLLDH-FRAPYAKLAGLEHLVLDEADRMLD-MGFLPDIRRILKHIPARRQ 177
Query: 256 MMFFSATYGTAVMQFAEIIVSNPIIIRLLREEESLDNIKQYYVKCKSAEDKYRAICNIYG 315
+FFSAT + A ++ NP + + R I Q V + E K + +
Sbjct: 178 TLFFSATMPAPIGVLAREMLRNPATVNINRIAAPAAGITQA-VYPVAQELKAALLVALLK 236
Query: 316 VITIGQAIIFCHTRKTASWLSEKMSKDGHSVAVLSGELTVEQRIAVLDRFRVGLEKVLIT 375
I A++F T+ A+ L+E + + G + G + +R L F+ G +VL+
Sbjct: 237 RDDIRDALVFTRTKHRANRLAEHLVRQGIKAERIHGNRSQGRRTEALAGFKAGKYRVLVA 296
Query: 376 TNVLSRGIDVEQVTLVVNFDMPMDMNRKADCETYLHRIGRTGRFGKAGIAINLIDSPQAM 435
T++ +RGIDV ++ VVNFD+P+ + Y+HR+GRT R G A + SPQ
Sbjct: 297 TDIAARGIDVTELGHVVNFDVPLVP------DDYIHRVGRTARAEATGDAFTFV-SPQEQ 349
Query: 436 EICTDIEAHFGKKIQLLDIED 456
T IE GK++ + + D
Sbjct: 350 GDLTRIERVIGKQLPRITVPD 370
>UniRef50_Q1MYS3 Cluster: Probable ATP-dependent RNA helicase; n=1;
Oceanobacter sp. RED65|Rep: Probable ATP-dependent RNA
helicase - Oceanobacter sp. RED65
Length = 449
Score = 156 bits (379), Expect = 1e-36
Identities = 117/361 (32%), Positives = 192/361 (53%), Gaps = 22/361 (6%)
Query: 80 FEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMIAQSQSGTGKTAAFVLAML 139
F++ L +LKG+ A+GF + +Q+ +P L Q+++ +++G+GKTAAFV+ ML
Sbjct: 2 FQSFSLDQRILKGIEALGFTKATDVQQQTIPEALKQ--QDLMVCARTGSGKTAAFVVPML 59
Query: 140 SRVDSNK---NYPQVLCLSPTYELAIQTGEVAAKMAKFCPEIKLKYAVRGEELPRGSKI- 195
+ ++K + + L L PT ELA Q + +AKF I+ G+E + +
Sbjct: 60 QHLLTHKAPNSGTRALILVPTRELAKQLLKQCQALAKFTG-IQSGMITGGQEFKFQAALF 118
Query: 196 --TDHILIGTPGKMFDWGVKFGMFDMGKIKVFVLDEADVMINRQGHQDQCIRIHKCL-PS 252
I+I TPG++ D +K M ++ F+LDEAD M++ +D + C +
Sbjct: 119 RKNPEIIIATPGRLIDH-LKQKKDLMEDVEYFILDEADRMLDMGFEEDVLTIANACSGKA 177
Query: 253 TCQMMFFSATYGTAVMQFA-EIIVSNP--IIIRLLREEESLDNIKQYYVKCKSAEDKYRA 309
Q + FSAT ++ + I ++P I++ R E S NI+Q+Y+ + K R
Sbjct: 178 KPQTLLFSATLQQRGLKHVIKQIQNDPEEIVVDSFRGEHS--NIEQHYMLADDDKHKQRI 235
Query: 310 ICNIYGVITIGQAIIFCHTRKTASWLSEKMSKDGHSVAVLSGELTVEQRIAVLDRFRVGL 369
+ + QAIIF +T++ +S V L G++T ++R V+ + R G
Sbjct: 236 LTWLLSNEEYRQAIIFTNTKEKTEQTYHFLSYHNVEVGYLHGDMTQDERNHVMTQMRNGR 295
Query: 370 EKVLITTNVLSRGIDVEQVTLVVNFDMPMDMNRKADCETYLHRIGRTGRFGKAGIAINLI 429
KVL+ T+V +RG+D++ + LV+NFDM R D Y+HRIGRTGR +G AI+LI
Sbjct: 296 FKVLVATDVAARGLDIQSIDLVINFDMA----RSGD--DYVHRIGRTGRAEASGSAISLI 349
Query: 430 D 430
D
Sbjct: 350 D 350
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.319 0.135 0.390
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 495,758,156
Number of Sequences: 1657284
Number of extensions: 20092720
Number of successful extensions: 54494
Number of sequences better than 10.0: 500
Number of HSP's better than 10.0 without gapping: 1334
Number of HSP's successfully gapped in prelim test: 578
Number of HSP's that attempted gapping in prelim test: 48640
Number of HSP's gapped (non-prelim): 2608
length of query: 465
length of database: 575,637,011
effective HSP length: 103
effective length of query: 362
effective length of database: 404,936,759
effective search space: 146587106758
effective search space used: 146587106758
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 74 (33.9 bits)
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