GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001223-TA|BGIBMGA001223-PA|IPR014001|DEAD-like
helicases, N-terminal, IPR001650|Helicase, C-terminal,
IPR014021|Helicase superfamily 1 and 2 ATP-binding, IPR014014|DEAD-box
RNA helicase Q motif, IPR011545|DEAD/DEAH box helicase, N-terminal
         (465 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicas...   175   5e-46
DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulati...    22   8.0  

>AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicase
           protein.
          Length = 580

 Score =  175 bits (426), Expect = 5e-46
 Identities = 130/421 (30%), Positives = 219/421 (52%), Gaps = 30/421 (7%)

Query: 37  PDTPNAADTSLLMKIIRQGLVESKLD-IEIQRKDPNSPLYSVKTFEALHLKPNLLKGVYA 95
           P+  N  D  L    I  G+   KLD IE++    ++P   + +FE   L+P+LL+ V  
Sbjct: 119 PEVENVED--LFTSGITTGVNFMKLDEIEVKVTGNDAPP-PITSFETSGLRPHLLENVKK 175

Query: 96  MGFNAPSKIQETALPTLLADPPQNMIAQSQSGTGKTAAFVLAMLSRVDSNKNYPQ----- 150
            G+  P+ IQ+ A+P +L+   +++++ +Q+G+GKTAAF+L ++  + S+KN P      
Sbjct: 176 SGYTKPTAIQKYAIPVILSG--RDLMSCAQTGSGKTAAFMLPIIHNLLSDKNPPNTENNC 233

Query: 151 ----VLCLSPTYELAIQTGEVAAKMA-KFCPEIKLKYAVRGEELPRGSKITD-HILIGTP 204
               V+ +SPT ELAIQ  +   K A     ++ + Y        RG  +   HIL+ TP
Sbjct: 234 AQPVVVIMSPTRELAIQIADQGKKFAYNSTVKVAVIYGGTSTNHQRGRILGGCHILVATP 293

Query: 205 GKMFDWGVKFGMFDMGKIKVFVLDEADVMINRQ--GHQDQCIRIHKCLPSTC--QMMFFS 260
           G++ D+ V  G      +K FVLDEAD M++    G  ++ +  H+ +P+T   Q + FS
Sbjct: 294 GRLKDF-VNRGNVSFNSLKYFVLDEADRMLDMGFLGDVEEMLS-HQSMPATGERQTLMFS 351

Query: 261 ATYGTAVMQFAEIIVSNPIIIRLLREEESLDNIKQYYVKCKSAEDKYRAICNIYGVITIG 320
           AT+   V Q A   + N I I +     +  +++Q + +  S  DK   + +I       
Sbjct: 352 ATFPEEVQQLAGKFLLNYIFIAVGIVGSACTDVEQKFFQV-SKFDKRSKLVSILEKAPNE 410

Query: 321 QAIIFCHTRKTASWLSEKMSKDGHSVAVLSGELTVEQRIAVLDRFRVGLEKVLITTNVLS 380
           + +IF  T++ A +L+  +S+       + G+    +R   L  F+ G  KVL+ T V +
Sbjct: 411 RTLIFVETKRNADFLATFLSEQNIQSTSIHGDRYQSEREKALLDFKTGHRKVLVATGVAA 470

Query: 381 RGIDVEQVTLVVNFDMPMDMNRKADCETYLHRIGRTGRFGKAGIAINLIDSPQAMEICTD 440
           RG+D++ V  V+N+D+P  +      + Y+HRIGRTGR G  G A +  D  Q   + +D
Sbjct: 471 RGLDIKDVQHVINYDLPKSI------DEYVHRIGRTGRVGNKGKATSFFDEDQDRNLASD 524

Query: 441 I 441
           +
Sbjct: 525 L 525


>DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulation
           protein.
          Length = 947

 Score = 22.2 bits (45), Expect = 8.0
 Identities = 12/34 (35%), Positives = 18/34 (52%), Gaps = 2/34 (5%)

Query: 117 PQNMIAQSQSGTGKTAAFVLAMLSRVDSNKNYPQ 150
           P NM  + +   G+  A  +   S V+SN+N PQ
Sbjct: 716 PDNM--KLEKVPGECCAICVNATSLVESNRNVPQ 747


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.319    0.135    0.390 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 102,279
Number of Sequences: 317
Number of extensions: 4152
Number of successful extensions: 14
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 7
Number of HSP's gapped (non-prelim): 2
length of query: 465
length of database: 114,650
effective HSP length: 59
effective length of query: 406
effective length of database: 95,947
effective search space: 38954482
effective search space used: 38954482
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 45 (22.2 bits)