Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001223-TA|BGIBMGA001223-PA|IPR014001|DEAD-like
helicases, N-terminal, IPR001650|Helicase, C-terminal,
IPR014021|Helicase superfamily 1 and 2 ATP-binding, IPR014014|DEAD-box
RNA helicase Q motif, IPR011545|DEAD/DEAH box helicase, N-terminal
(465 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyc... 415 e-117
SPAC1006.07 |||translation initiation factor eIF4A|Schizosacchar... 264 2e-71
SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A related|Schizosa... 262 7e-71
SPBC776.09 |ste13||ATP-dependent RNA helicase Ste13|Schizosaccha... 207 3e-54
SPAC17G6.14c |uap56||ATP-dependent RNA helicase Uap56|Schizosacc... 172 8e-44
SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1 |Schizosacch... 157 4e-39
SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomy... 151 2e-37
SPBP8B7.16c |dbp2||ATP-dependent RNA helicase Dbp2|Schizosacchar... 149 1e-36
SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3 |Schizosaccha... 138 2e-33
SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase Su... 137 4e-33
SPCC63.11 |prp28||U5 snRNP-associated protein Prp28 |Schizosacch... 135 1e-32
SPCC10H11.01 |prp11||ATP-dependent RNA helicase Prp11|Schizosacc... 134 2e-32
SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8 |Schizosaccha... 132 8e-32
SPCC1494.06c |||ATP-dependent RNA helicase Dbp9 |Schizosaccharom... 127 3e-30
SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomy... 121 2e-28
SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1 |Schizosacch... 116 7e-27
SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomy... 115 2e-26
SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10 |Schizosac... 111 2e-25
SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomy... 107 4e-24
SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116 |S... 105 1e-23
SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomy... 94 4e-20
SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyce... 61 3e-10
SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomy... 57 5e-09
SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces pom... 55 2e-08
SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharom... 55 2e-08
SPAC11E3.01c |swr1|SPAC2H10.03c|SNF2 family helicase Swr1|Schizo... 37 0.007
SPAC23A1.19c ||SPAC26H5.01c|RecQ type DNA helicase Hrq1 |Schizos... 36 0.012
SPAC20H4.04 |mfh2||ATP-dependent 3' to 5' DNA helicase |Schizosa... 36 0.016
SPCC188.13c |dcr1|SPCC584.10c|dicer|Schizosaccharomyces pombe|ch... 33 0.064
SPAC1783.05 |hrp1|chd1|ATP-dependent DNA helicase Hrp1|Schizosac... 31 0.26
SPAC20G8.08c |fft1||fun thirty related protein Fft1|Schizosaccha... 29 1.4
SPAC20H4.09 |||ATP-dependent RNA helicase, spliceosomal |Schizos... 29 1.4
SPBC11C11.11c ||SPBC3B8.12|ATP-dependent DNA helicase Irc3 |Schi... 27 4.2
SPBC106.06 |cct4||chaperonin-containing T-complex delta subunit ... 27 5.6
SPAC3H5.06c |pol1|swi7, polA|DNA polymerase alpha catalytic subu... 27 5.6
SPCC320.05 |||sulphate transporter |Schizosaccharomyces pombe|ch... 27 5.6
SPAC25A8.01c ||snf2SR|fun thirty related protein Fft3|Schizosacc... 27 5.6
SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase Snf22... 27 7.4
SPCC553.01c ||SPCC736.01c|meiotic chromosome segregation protein... 27 7.4
SPAC1250.01 |snf21|SPAC29A4.21|ATP-dependent DNA helicase Snf21|... 27 7.4
SPAC26H5.06 |pot1||telomere end-binding protein Pot1 |Schizosacc... 26 9.7
>SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 503
Score = 415 bits (1022), Expect = e-117
Identities = 209/441 (47%), Positives = 294/441 (66%), Gaps = 3/441 (0%)
Query: 23 LDKKHNQETDSDDVPDTPNAADTSLLMKIIRQGLVESKLDIEIQRKDPNSPLYSVKTFEA 82
+D K Q+ ++ + + N + + E ++ + + DPNSPL+SVK+FE
Sbjct: 59 VDAKSEQDKATNTIAEDANTKQSENDESNLIPNKNEVRVKLADLQADPNSPLFSVKSFEE 118
Query: 83 LHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMIAQSQSGTGKTAAFVLAMLSRV 142
L LKP LLKG+Y+M F PSKIQE ALP LL++PP+NMI QSQSGTGKTAAF L MLSRV
Sbjct: 119 LELKPELLKGIYSMKFQKPSKIQEKALPLLLSNPPRNMIGQSQSGTGKTAAFALTMLSRV 178
Query: 143 DSNKNYPQVLCLSPTYELAIQTGEVAAKMAKFCPEIKLKYAVRGEELPRGSKITDHILIG 202
D++ PQ +CL+P+ ELA Q +V +M K+ E+K + ++ + +P+G+KI I+IG
Sbjct: 179 DASVPKPQAICLAPSRELARQIMDVVTEMGKYT-EVKTAFGIK-DSVPKGAKIDAQIVIG 236
Query: 203 TPGKMFDWGVKFGMFDMGKIKVFVLDEADVMINRQGHQDQCIRIHKCLPSTCQMMFFSAT 262
TPG + D +K D IKVFVLDEAD M+++QG DQ +RI LP Q++ FSAT
Sbjct: 237 TPGTVMDL-MKRRQLDARDIKVFVLDEADNMLDQQGLGDQSMRIKHLLPRNTQIVLFSAT 295
Query: 263 YGTAVMQFAEIIVSNPIIIRLLREEESLDNIKQYYVKCKSAEDKYRAICNIYGVITIGQA 322
+ V ++AE N IRL EE S++ IKQ Y+ C+S E KY + +YG++TIGQ+
Sbjct: 296 FSERVEKYAERFAPNANEIRLKTEELSVEGIKQLYMDCQSEEHKYNVLVELYGLLTIGQS 355
Query: 323 IIFCHTRKTASWLSEKMSKDGHSVAVLSGELTVEQRIAVLDRFRVGLEKVLITTNVLSRG 382
IIFC + TA ++ +M+ DGH+VA L+G L QR A++D FRVG KVL+TTNV++RG
Sbjct: 356 IIFCKKKDTAEEIARRMTADGHTVACLTGNLEGAQRDAIMDSFRVGTSKVLVTTNVIARG 415
Query: 383 IDVEQVTLVVNFDMPMDMNRKADCETYLHRIGRTGRFGKAGIAINLIDSPQAMEICTDIE 442
IDV QV LVVN+DMP+D + D +TYLHRIGRTGRFG+ G++IN + ++ E I+
Sbjct: 416 IDVSQVNLVVNYDMPLDQAGRPDPQTYLHRIGRTGRFGRVGVSINFVHDKKSWEEMNAIQ 475
Query: 443 AHFGKKIQLLDIEDAEEIEKI 463
+F + I + +D EE+EK+
Sbjct: 476 EYFQRPITRVPTDDYEELEKV 496
>SPAC1006.07 |||translation initiation factor
eIF4A|Schizosaccharomyces pombe|chr 1|||Manual
Length = 392
Score = 264 bits (647), Expect = 2e-71
Identities = 141/388 (36%), Positives = 241/388 (62%), Gaps = 17/388 (4%)
Query: 77 VKTFEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMIAQSQSGTGKTAAFVL 136
+ TF+ ++LKP LL+G+YA GF PS IQ+ A+ +L + ++++AQ+QSGTGKTA F +
Sbjct: 18 IDTFDDMNLKPELLRGIYAYGFERPSAIQQRAIMPILGE--RDVLAQAQSGTGKTATFSI 75
Query: 137 AMLSRVDSNKNYPQVLCLSPTYELAIQTGEVAAKMAKFCPEIKLKYAVRGEELPRGSKIT 196
++L ++D++ Q L L+PT ELA Q +V + ++ +A G L R
Sbjct: 76 SVLQKIDTSLKQCQALILAPTRELAQQIQKVVVALGDLM-NVEC-HACIGGTLVRDDMAA 133
Query: 197 ----DHILIGTPGKMFDWGVKFGMFDMGKIKVFVLDEADVMINRQGHQDQCIRIHKCLPS 252
H+++GTPG++ D ++ +++FVLDEAD M++R G +DQ I + LP
Sbjct: 134 LQAGVHVVVGTPGRVHDM-IQRRALPTDAVQMFVLDEADEMLSR-GFKDQIYDIFQLLPP 191
Query: 253 TCQMMFFSATYGTAVMQFAEIIVSNPIIIRLLREEESLDNIKQYYVKCKSAEDKYRAICN 312
T Q++ SAT V++ + +PI I + ++E +L+ IKQ+YV + E K +C+
Sbjct: 192 TAQVVLLSATMPQDVLEVTTKFMRDPIRILVKKDELTLEGIKQFYVAVEKEEWKLDTLCD 251
Query: 313 IYGVITIGQAIIFCHTRKTASWLSEKMSKDGHSVAVLSGELTVEQRIAVLDRFRVGLEKV 372
+Y +T+ QA+IFC+TR+ WL+E++++ +V+ + G++ QR ++ FR G ++
Sbjct: 252 LYETVTVTQAVIFCNTRRKVDWLTEQLTERDFTVSSMHGDMDQAQRDTLMHEFRTGSSRI 311
Query: 373 LITTNVLSRGIDVEQVTLVVNFDMPMDMNRKADCETYLHRIGRTGRFGKAGIAINLIDSP 432
LITT++L+RGIDV+QV+LV+N+D+P A+ E Y+HRIGR GRFG+ G++IN + +
Sbjct: 312 LITTDLLARGIDVQQVSLVINYDLP------ANRENYIHRIGRGGRFGRKGVSINFVTND 365
Query: 433 QAMEICTDIEAHFGKKIQLLDIEDAEEI 460
+ + +IE + I+ + + A+ I
Sbjct: 366 D-VRMMREIEQFYNTHIEEMPMNIADLI 392
>SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A
related|Schizosaccharomyces pombe|chr 1|||Manual
Length = 394
Score = 262 bits (642), Expect = 7e-71
Identities = 138/377 (36%), Positives = 230/377 (61%), Gaps = 15/377 (3%)
Query: 76 SVKTFEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMIAQSQSGTGKTAAFV 135
+V +FE ++LK +LL+G+YA G+ PS +Q A+ + +++IAQ+QSGTGKTA F
Sbjct: 19 AVSSFEEMNLKEDLLRGIYAYGYETPSAVQSRAIIQICKG--RDVIAQAQSGTGKTATFS 76
Query: 136 LAMLSRVDSNKNYPQVLCLSPTYELAIQTGEVAAKMAKFCPEIKLKYAVRGEELPRGSKI 195
+ +L +D + Q L LSPT ELA+Q V + ++ + G + K
Sbjct: 77 IGILQSIDLSVRDTQALILSPTRELAVQIQNVVLALGDHM-NVQCHACIGGTSVGNDIKK 135
Query: 196 TD---HILIGTPGKMFDWGVKFGMFDMGKIKVFVLDEADVMINRQGHQDQCIRIHKCLPS 252
D H++ GTPG++ D ++ +K+ +LDEAD ++N QG ++Q I++ LP
Sbjct: 136 LDYGQHVVSGTPGRVTDM-IRRRNLRTRNVKMLILDEADELLN-QGFKEQIYDIYRYLPP 193
Query: 253 TCQMMFFSATYGTAVMQFAEIIVSNPIIIRLLREEESLDNIKQYYVKCKSAEDKYRAICN 312
Q++ SAT V++ +NP+ I + R+E +L+ +KQY++ + E K+ +C+
Sbjct: 194 GTQVVVVSATLPQDVLEMTNKFTTNPVRILVKRDELTLEGLKQYFIAVEKEEWKFDTLCD 253
Query: 313 IYGVITIGQAIIFCHTRKTASWLSEKMSKDGHSVAVLSGELTVEQRIAVLDRFRVGLEKV 372
+Y +TI QA+IFC++R+ WL+EKM + +V + GE+ ++R A++ FR G +V
Sbjct: 254 LYDTLTITQAVIFCNSRRKVDWLTEKMREANFTVTSMHGEMPQKERDAIMQDFRQGNSRV 313
Query: 373 LITTNVLSRGIDVEQVTLVVNFDMPMDMNRKADCETYLHRIGRTGRFGKAGIAINLIDSP 432
LI T++ +RGIDV+QV+LV+N+D+P A+ E Y+HRIGR+GRFG+ G+AIN + +
Sbjct: 314 LICTDIWARGIDVQQVSLVINYDLP------ANRENYIHRIGRSGRFGRKGVAINFVTN- 366
Query: 433 QAMEICTDIEAHFGKKI 449
+ + I DIE ++ I
Sbjct: 367 EDVRILRDIEQYYSTVI 383
>SPBC776.09 |ste13||ATP-dependent RNA helicase
Ste13|Schizosaccharomyces pombe|chr 2|||Manual
Length = 485
Score = 207 bits (505), Expect = 3e-54
Identities = 127/374 (33%), Positives = 209/374 (55%), Gaps = 17/374 (4%)
Query: 80 FEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMIAQSQSGTGKTAAFVLAML 139
FE +LK LL G++ GF PS IQE ++P L+ ++++A++++GTGKTAAFV+ L
Sbjct: 46 FEDYYLKRELLMGIFEAGFERPSPIQEESIPIALSG--RDILARAKNGTGKTAAFVIPSL 103
Query: 140 SRVDSNKNYPQVLCLSPTYELAIQTGEVAAKMAKFCPEIKLKYAVRGEELPRGS-KITD- 197
+VD+ K+ Q L L PT ELA+QT +V + K +K+ G L ++ D
Sbjct: 104 EKVDTKKSKIQTLILVPTRELALQTSQVCKTLGKHM-NVKVMVTTGGTTLRDDIIRLNDT 162
Query: 198 -HILIGTPGKMFDWGVKFGMFDMGKIKVFVLDEADVMINRQGHQDQCIRIHKCLPSTCQM 256
HI++GTPG++ D K G+ D + FV+DEAD +++ + ++ P Q+
Sbjct: 163 VHIVVGTPGRVLDLAGK-GVADFSECTTFVMDEADKLLSPE-FTPIIEQLLSYFPKNRQI 220
Query: 257 MFFSATYGTAVMQFAEIIVSNPIIIRLLREEESLDNIKQYYVKCKSAEDKYRAICNIYGV 316
+SAT+ V F + ++ P I L+ +E +L + QYY ++ K + ++
Sbjct: 221 SLYSATFPLIVKNFMDKHLNKPYEINLM-DELTLRGVTQYYAFVDESQ-KVHCLNTLFSK 278
Query: 317 ITIGQAIIFCHTRKTASWLSEKMSKDGHSVAVLSGELTVEQRIAVLDRFRVGLEKVLITT 376
+ I Q+IIFC++ L++K+++ G+S ++ R V FR G+ + L+ +
Sbjct: 279 LQINQSIIFCNSTNRVELLAKKITELGYSCFYSHAKMLQSHRNRVFHNFRNGVCRNLVCS 338
Query: 377 NVLSRGIDVEQVTLVVNFDMPMDMNRKADCETYLHRIGRTGRFGKAGIAINLIDSPQAME 436
++L+RGID++ V +V+NFD P + ETYLHRIGR+GRFG G+AI+ I
Sbjct: 339 DLLTRGIDIQAVNVVINFDFP------KNAETYLHRIGRSGRFGHRGLAISFISWADRFN 392
Query: 437 ICTDIEAHFGKKIQ 450
+ IE G +IQ
Sbjct: 393 LYR-IENELGTEIQ 405
>SPAC17G6.14c |uap56||ATP-dependent RNA helicase
Uap56|Schizosaccharomyces pombe|chr 1|||Manual
Length = 434
Score = 172 bits (419), Expect = 8e-44
Identities = 109/388 (28%), Positives = 197/388 (50%), Gaps = 19/388 (4%)
Query: 80 FEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMIAQSQSGTGKTAAFVLAML 139
F LKP LL+ + GF PS++Q+ +P + +++ Q++SG GKTA FVL+ L
Sbjct: 53 FRDFLLKPELLRAITDSGFEHPSEVQQVCIPQSILGT--DVLCQAKSGMGKTAVFVLSTL 110
Query: 140 SRVDSNKNYPQVLCLSPTYELAIQTGEVAAKMAKFCPEIKLKYAVRGEELPRGSKI---- 195
+++ VL L T ELA Q A+ +K+ P+++ G + + +
Sbjct: 111 QQIEPVDGEVSVLVLCHTRELAFQIKNEYARFSKYLPDVRTAVFYGGINIKQDMEAFKDK 170
Query: 196 --TDHILIGTPGKMFDWGVKFGMFDMGKIKVFVLDEADVMINRQGHQDQCIRIHKCLPST 253
+ HI++ TPG++ + V+ + + +K FVLDE D ++ + + + P
Sbjct: 171 SKSPHIVVATPGRL-NALVREKILKVNSVKHFVLDECDKLLESVDMRRDIQEVFRATPPQ 229
Query: 254 CQMMFFSATYGTAVMQFAEIIVSNPIIIRLLREEE-SLDNIKQYYVKCKSAEDKYRAICN 312
Q+M FSAT + + + NP+ I + E + +L ++Q+YVK + + K R I +
Sbjct: 230 KQVMMFSATLSNEIRPICKKFMQNPLEIYVDDETKLTLHGLQQHYVKLEE-KAKNRKIND 288
Query: 313 IYGVITIGQAIIFCHTRKTASWLSEKMSKDGHSVAVLSGELTVEQRIAVLDRFRVGLEKV 372
+ + Q +IF + A+ L + + + G L E+RI F+ +++
Sbjct: 289 LLDSLEFNQVVIFVKSVSRANELDRLLRECNFPSICIHGGLPQEERIKRYKAFKDFDKRI 348
Query: 373 LITTNVLSRGIDVEQVTLVVNFDMPMDMNRKADCETYLHRIGRTGRFGKAGIAINLIDSP 432
+ T+V RGID+E+V +V+N+DMP ++YLHR+GR GRFG G+AI S
Sbjct: 349 CVATDVFGRGIDIERVNIVINYDMP------DSPDSYLHRVGRAGRFGTKGLAITFSSSE 402
Query: 433 QAMEICTDIEAHFGKKIQLLDIEDAEEI 460
+ +I I+ F ++ + ++ D ++
Sbjct: 403 EDSQILDKIQERF--EVNITELPDEIDV 428
>SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 754
Score = 157 bits (380), Expect = 4e-39
Identities = 110/358 (30%), Positives = 187/358 (52%), Gaps = 18/358 (5%)
Query: 79 TFEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMIAQSQSGTGKTAAFVLAM 138
+F++++L +LKG+ +GF P++IQ+ +P L ++++ + +G+GKTAAF++ +
Sbjct: 260 SFQSMNLSRPILKGLSNLGFEVPTQIQDKTIPLALLG--KDIVGAAVTGSGKTAAFIVPI 317
Query: 139 LSRVDSN-KNYP--QVLCLSPTYELAIQTGEVAAKMAKFCPEIKLKYAVRGEELP---RG 192
L R+ K P +VL L PT ELA+Q VA K+A F +I + + G L +
Sbjct: 318 LERLLYRPKKVPTTRVLILCPTRELAMQCHSVATKIASFT-DIMVCLCIGGLSLKLQEQE 376
Query: 193 SKITDHILIGTPGKMFDWGVKFGMFDMGKIKVFVLDEADVMINRQGHQDQCIRIHKCLPS 252
+ I+I TPG+ D F + I++ V+DEAD M+ G D+ I + P
Sbjct: 377 LRKRPDIVIATPGRFIDHMRNSQGFTVENIEIMVMDEADRMLE-DGFADELNEIIQACPK 435
Query: 253 TCQMMFFSATYGTAVMQFAEIIVSNPIIIRLLREEESLDNIKQYYVKCKSAEDKYRAICN 312
+ Q M FSAT V + ++ P+ + + ++ + + Q +V+ + + R
Sbjct: 436 SRQTMLFSATMTDKVDDLIRLSLNRPVRVFVDNKKTTAKLLTQEFVRVRPQRELLRPAML 495
Query: 313 IYGVITI--GQAIIFCHTRKTASWLSEKMSKDGHSVAVLSGELTVEQRIAVLDRFRVGLE 370
IY + + IIF ++ A + + + G L+ EQR+ L+ FR G
Sbjct: 496 IYLCKELFHRRTIIFFRSKAFAHKMRVIFGLLSLNATEIHGSLSQEQRVRALEDFRDGKC 555
Query: 371 KVLITTNVLSRGIDVEQVTLVVNFDMPMDMNRKADCETYLHRIGRTGRFGKAGIAINL 428
L+ T+V SRGID++ + +V+N++ P A E YLHR+GRT R G++G AI L
Sbjct: 556 NYLLATDVASRGIDIKGIEVVINYEAP------ATHEVYLHRVGRTARAGRSGRAITL 607
>SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 465
Score = 151 bits (367), Expect = 2e-37
Identities = 107/382 (28%), Positives = 192/382 (50%), Gaps = 17/382 (4%)
Query: 78 KTFEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMIAQSQSGTGKTAAFVLA 137
KTF+ L + L + +GF P+ IQ+ A+P +L +++I +Q+G+GKTAAF L
Sbjct: 46 KTFKELGVIDELCEACEKLGFKTPTPIQQEAIPVVLNK--RDVIGLAQTGSGKTAAFALP 103
Query: 138 MLSRVDSNKNYPQVLCLSPTYELAIQTGEVAAKMAKFCPEIKLKYAVRGEELPRGSKITD 197
++ + +N + + L+PT ELA Q E + ++ V G ++ +
Sbjct: 104 VIQELWNNPSPFFAVVLAPTRELAYQISEQFEAIGGSIG-VRSVVIVGGMDMVTQAVALS 162
Query: 198 ---HILIGTPGKMFDWGVKFGMFDMGKIKVFVLDEADVMINRQGHQDQCIRIHKCLPSTC 254
H+L+ TPG++ D F + +K ++DEAD +++ +I K +P
Sbjct: 163 KKPHVLVCTPGRLMDHLENTKGFSLKNLKYLIMDEADRLLDMD-FGPIIDKILKIIPHER 221
Query: 255 QMMFFSATYGTAVMQFAEIIVSNPIIIRLLREEESLDNIKQYYVKCK-SAEDKYRAICNI 313
+ + FSAT + V + + P+ + + + ++D + Q Y+ +D Y + +
Sbjct: 222 RTLLFSATMTSKVEKLQRASLHQPVRVAVSSKFSTVDTLIQRYLFFPFKHKDTY--LVYL 279
Query: 314 YGVITIGQAIIFCHTRKTASWLSEKMSKDGHSVAVLSGELTVEQRIAVLDRFRVGLEKVL 373
+ IIF T L+ + G S L G+L+ R+ L++F+ G L
Sbjct: 280 VNELAGNSIIIFARTVNDTQRLAILLRTLGFSAIPLHGQLSQSNRLGALNKFKSGARSTL 339
Query: 374 ITTNVLSRGIDVEQVTLVVNFDMPMDMNRKADCETYLHRIGRTGRFGKAGIAINLIDSPQ 433
+ T+V +RG+D+ V +V+N+D+P D + Y+HR+GRT R G+AG +I L+ +
Sbjct: 340 VATDVAARGLDIPLVDVVINYDIP------TDSKAYIHRVGRTARAGRAGKSIALV-TQY 392
Query: 434 AMEICTDIEAHFGKKIQLLDIE 455
+E IEA GKK+Q +I+
Sbjct: 393 DLEPFLRIEATIGKKMQEYEID 414
>SPBP8B7.16c |dbp2||ATP-dependent RNA helicase
Dbp2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 550
Score = 149 bits (360), Expect = 1e-36
Identities = 114/373 (30%), Positives = 188/373 (50%), Gaps = 26/373 (6%)
Query: 77 VKTFEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMIAQSQSGTGKTAAFVL 136
V TFE +LK V +GF AP+ IQ+ A P ++ ++M+ S +G+GKT ++ L
Sbjct: 121 VTTFEEAGFPNYVLKEVKQLGFEAPTPIQQQAWPMAMSG--RDMVGISATGSGKTLSYCL 178
Query: 137 AMLSRVDSNK-----NYPQVLCLSPTYELAIQTGEVAAKMAKFCPEIKLKYAVRGEELPR 191
+ +++ + P VL L+PT ELA+Q + K K I+ G +PR
Sbjct: 179 PAIVHINAQPLLSPGDGPIVLVLAPTRELAVQIQQECTKFGK-SSRIRNTCVYGG--VPR 235
Query: 192 GSKITD-----HILIGTPGKMFDWGVKFGMFDMGKIKVFVLDEADVMINRQGHQDQCIRI 246
G +I D I I TPG++ D + ++ ++ VLDEAD M++ G + Q +I
Sbjct: 236 GPQIRDLIRGVEICIATPGRLLDM-LDSNKTNLRRVTYLVLDEADRMLD-MGFEPQIRKI 293
Query: 247 HKCLPSTCQMMFFSATYGTAVMQFAEIIVSNPIIIRL-LREEESLDNIKQYYVKCKSAED 305
+ Q + FSAT+ V + A +++ I + + + + NIKQ +A+
Sbjct: 294 VDQIRPDRQTVMFSATWPKEVQRLARDYLNDYIQVTVGSLDLAASHNIKQIVEVVDNADK 353
Query: 306 KYRAICNIYGVITI--GQAIIFCHTRKTASWLSEKMSKDGHSVAVLSGELTVEQRIAVLD 363
+ R +I V+ + +IF T++ A ++ + +DG + G+ ++R VL+
Sbjct: 354 RARLGKDIEEVLKDRDNKVLIFTGTKRVADDITRFLRQDGWPALAIHGDKAQDERDWVLN 413
Query: 364 RFRVGLEKVLITTNVLSRGIDVEQVTLVVNFDMPMDMNRKADCETYLHRIGRTGRFGKAG 423
FR G +++ T+V SRGIDV+ +T V N+D P + E Y+HRIGRTGR G G
Sbjct: 414 EFRTGKSPIMVATDVASRGIDVKGITHVFNYDFP------GNTEDYVHRIGRTGRAGAKG 467
Query: 424 IAINLIDSPQAME 436
A S A +
Sbjct: 468 TAYTYFTSDNAKQ 480
>SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 578
Score = 138 bits (333), Expect = 2e-33
Identities = 118/383 (30%), Positives = 195/383 (50%), Gaps = 33/383 (8%)
Query: 69 DPNSP--LYSVKTFEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMIAQSQS 126
DP S L + F+ L + L +G+ + P+ IQ P LLA ++++ +++
Sbjct: 156 DPKSSENLLPILQFDELDVSAKLREGL--KNYKEPTPIQAATWPYLLAG--RDVVGIAET 211
Query: 127 GTGKTAAF---VLAMLSRVDSNKNYPQVLCLSPTYELAIQTGEVAAKMAKFCPEIKLKYA 183
G+GKT AF L L+ + NK+ P+VL +SPT ELAIQT E + + +K
Sbjct: 212 GSGKTVAFGIPALQYLNGLSDNKSVPRVLVVSPTRELAIQTYENLNSLIQGT-NLKAVVV 270
Query: 184 VRG---EELPRGSKITDHILIGTPGKMFDWGVKFGMFDMGKIKVFVLDEADVMINRQGHQ 240
G E R +K ++IGTPG++ D + G D ++ VLDEAD M++ Q
Sbjct: 271 YGGAPKSEQARAAKNAS-VIIGTPGRLLDL-INDGSIDCSQVGYLVLDEADRMLDTGFEQ 328
Query: 241 D-QCIRIHKCLPS---TCQMMFFSATYGTAVMQFAEIIVSNPIIIRLLREE-ESLDNIKQ 295
D + I H P+ + Q +FFSAT+ +V A + +P+ I + +E + NI Q
Sbjct: 329 DIRNIISHTPDPTRNGSRQTVFFSATWPESVRALAATFLKDPVKITIGSDELAASQNITQ 388
Query: 296 YYVKCKSAEDKYRAICNIYGV-ITIG----QAIIFCHTRKTASWLSEKMSKDGHSVAVLS 350
K R + N+ ++ G + +IF +K A+ + +++ ++V +
Sbjct: 389 IVEILDDPRSKERMLDNLLRKHLSSGGKDDKILIFVLYKKEAARVEGTLARK-YNVVGIH 447
Query: 351 GELTVEQRIAVLDRFRVGLEKVLITTNVLSRGIDVEQVTLVVNFDMPMDMNRKADCETYL 410
G+++ R+ L+ F+ G VL+ T+V +RG+D+ +V LV+N P+ + E Y+
Sbjct: 448 GDMSQGARLQALNDFKSGKCPVLVATDVAARGLDIPKVQLVINVTFPLTI------EDYV 501
Query: 411 HRIGRTGRFGKAGIAINLIDSPQ 433
HRIGRTGR G AI +PQ
Sbjct: 502 HRIGRTGRANTKGTAITFF-TPQ 523
>SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase
Sum3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 636
Score = 137 bits (331), Expect = 4e-33
Identities = 104/375 (27%), Positives = 182/375 (48%), Gaps = 36/375 (9%)
Query: 77 VKTFEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMIAQSQSGTGKTAAFVL 136
V F + L +LL+ + G+ P+ +Q+ ++P + + ++++A +Q+G+GKTA F+
Sbjct: 168 VNEFTSPPLNSHLLQNIKLSGYTQPTPVQKNSIPIVTSG--RDLMACAQTGSGKTAGFLF 225
Query: 137 AMLSR----------VDSN--------KNYPQVLCLSPTYELAIQTGEVAAKMAKFCPEI 178
+LS VD + K YP L L+PT EL Q E + K + +
Sbjct: 226 PILSLAFDKGPAAVPVDQDAGMGYRPRKAYPTTLILAPTRELVCQIHEESRKFC-YRSWV 284
Query: 179 KLKYAVRGEELPRGSKITDH---ILIGTPGKMFDWGVKFGMFDMGKIKVFVLDEADVMIN 235
+ G ++ + D +L TPG++ D + G + IK VLDEAD M++
Sbjct: 285 RPCAVYGGADIRAQIRQIDQGCDLLSATPGRLVDL-IDRGRISLANIKFLVLDEADRMLD 343
Query: 236 RQGHQDQCIRIHKCLPSTC----QMMFFSATYGTAVMQFAEIIVSNPIIIRLLREEESLD 291
G + Q I + T Q + FSAT+ + A + + + + + R + +
Sbjct: 344 -MGFEPQIRHIVEGADMTSVEERQTLMFSATFPRDIQLLARDFLKDYVFLSVGRVGSTSE 402
Query: 292 NIKQYYVKCKSAEDKYRAICNIYGVITIGQAIIFCHTRKTASWLSEKMSKDGHSVAVLSG 351
NI Q V + +E + + ++ + G +IF T++ A L++ + + G
Sbjct: 403 NITQKVVHVEDSEKRSYLLDILHTLPPEGLTLIFVETKRMADTLTDYLLNSNFPATSIHG 462
Query: 352 ELTVEQRIAVLDRFRVGLEKVLITTNVLSRGIDVEQVTLVVNFDMPMDMNRKADCETYLH 411
+ T +R L+ FR G +++ T V SRG+D+ VT V+N+D+P D+ + Y+H
Sbjct: 463 DRTQRERERALELFRSGRTSIMVATAVASRGLDIPNVTHVINYDLPTDI------DDYVH 516
Query: 412 RIGRTGRFGKAGIAI 426
RIGRTGR G G A+
Sbjct: 517 RIGRTGRAGNTGQAV 531
>SPCC63.11 |prp28||U5 snRNP-associated protein Prp28
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 135 bits (326), Expect = 1e-32
Identities = 116/451 (25%), Positives = 214/451 (47%), Gaps = 51/451 (11%)
Query: 23 LDKKHNQETDSDDVPDTPNAADTSLLMKIIRQGLVESKLDIEIQRKDPNSPLYSVKTFEA 82
L +K ++ D DDVP + MK +++ +I I+ D +PL + +E
Sbjct: 200 LQEKRAKKIDWDDVPWREKPLEA---MKPRDWRILKEDYNISIKGDDLPNPL---RNWEE 253
Query: 83 LHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMIAQSQSGTGKTAAFVLAMLSRV 142
L +LK + + + PS IQ A+P LL +++I +++G+GKTAAF++ ++ +
Sbjct: 254 AGLPSEMLKVLKKVNYKEPSSIQRAAIPVLLQR--KDLIGIAETGSGKTAAFIIPLIIAI 311
Query: 143 -------DSNKNY-PQVLCLSPTYELA----IQTGEVAAKMAKFCPEIKLKYAVRGEELP 190
+SN + P + L+PT ELA ++ + A + C + +A +
Sbjct: 312 SKLPPLTESNMHLGPYAVVLAPTRELAQQIQVEGNKFAEPLGFRCVSVVGGHAFEEQSFQ 371
Query: 191 RGSKITDHILIGTPGKMFDWGVKFGMFDMGKIKVFVLDEADVMINRQGHQDQCIRIHKCL 250
HI++ TPG++ D ++ +F + + V+DEAD M++ G +D +I L
Sbjct: 372 MSQGA--HIVVATPGRLLDC-LERRLFVLSQCTYVVMDEADRMLD-MGFEDDVNKILSSL 427
Query: 251 PSTC-------------------QMMFFSATYGTAVMQFAEIIVSNPIIIRLLREEESLD 291
PS+ Q + FSAT V A+ + P+++ + +++D
Sbjct: 428 PSSNASEKDGSILATANSSSSRRQTIMFSATLPPRVANLAKSYLIEPVMLTIGNIGQAVD 487
Query: 292 NIKQYYVKCKSAEDKYRAICNIYGVITIGQAII-FCHTRKTASWLSEKMSKDGHSVAVLS 350
++Q K+R + I II F + ++ ++++++ G L
Sbjct: 488 RVEQRVEMISDDSKKWRRVEEILESNRFSPPIIIFVNLKRNIEAIAKQLNAIGWHAVTLH 547
Query: 351 GELTVEQRIAVLDRFRVGLEKVLITTNVLSRGIDVEQVTLVVNFDMPMDMNRKADCETYL 410
G + EQR +++ R +L+ T++ RGID+ V+LV+N++M + E Y
Sbjct: 548 GSKSQEQRERAIEQLRNKTADILVATDIAGRGIDIPNVSLVLNYNMAKSI------EDYT 601
Query: 411 HRIGRTGRFGKAGIAINLIDSPQAMEICTDI 441
HRIGRTGR GK+G AI + P+ ++ D+
Sbjct: 602 HRIGRTGRAGKSGTAITFL-GPEDTDVYYDL 631
>SPCC10H11.01 |prp11||ATP-dependent RNA helicase
Prp11|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1014
Score = 134 bits (325), Expect = 2e-32
Identities = 101/381 (26%), Positives = 186/381 (48%), Gaps = 30/381 (7%)
Query: 77 VKTFEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMIAQSQSGTGKTAAFVL 136
V ++ L + + ++G+ P+ IQ A+P + + +++I +++G+GKT AF+L
Sbjct: 417 VTSWSQCGLSAQTISVINSLGYEKPTSIQAQAIPAITSG--RDVIGVAKTGSGKTIAFLL 474
Query: 137 AMLSRVDSNKNY-----PQVLCLSPTYELAIQTGEVAAKMAKFCPEIKLKYAVRGEELPR 191
M + + P + ++PT ELA+Q + + F + ++ P
Sbjct: 475 PMFRHIKDQRPLKTGEGPIAIIMTPTRELAVQ---IFRECKPFLKLLNIRACCAYGGAPI 531
Query: 192 GSKITD-----HILIGTPGKMFD-WGVKFG-MFDMGKIKVFVLDEADVMINRQGHQDQCI 244
+I D I++ TPG+M D G + ++ + VLDEAD M + G + Q +
Sbjct: 532 KDQIADLKRGAEIVVCTPGRMIDVLSANAGRVTNLHRCTYLVLDEADRMFDL-GFEPQVM 590
Query: 245 RIHKCLPSTCQMMFFSATYGTAVMQFAEIIVSNPIIIRLLREEESLDNIKQYYVKCKSAE 304
RI + Q + FSAT+ A+ A ++ P+ I + ++Q V+ + E
Sbjct: 591 RIINNIRPDRQTVLFSATFPRAMEALARKVLKKPVEITVGGRSVVASEVEQI-VEVRPEE 649
Query: 305 DKYRAICNIYGVITIGQ----AIIFCHTRKTASWLSEKMSKDGHSVAVLSGELTVEQRIA 360
K+ + + G + Q ++F +++A L + K G++ + G R +
Sbjct: 650 SKFSRLLELLGELYNNQLDVRTLVFVDRQESADALLSDLMKRGYTSNSIHGGKDQHDRDS 709
Query: 361 VLDRFRVGLEKVLITTNVLSRGIDVEQVTLVVNFDMPMDMNRKADCETYLHRIGRTGRFG 420
+ ++ G+ VLI T+V++RG+DV+ + LVVN+D P M E Y+HR+GRTGR G
Sbjct: 710 TISDYKAGVFDVLIATSVVARGLDVKSLQLVVNYDCPNHM------EDYVHRVGRTGRAG 763
Query: 421 KAGIAINLIDSPQAMEICTDI 441
G+A+ I +P+ + DI
Sbjct: 764 HTGVAVTFI-TPEQEKYAVDI 783
>SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 453
Score = 132 bits (320), Expect = 8e-32
Identities = 118/391 (30%), Positives = 192/391 (49%), Gaps = 35/391 (8%)
Query: 78 KTFEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMIAQSQSGTGKTAAFVLA 137
K+F L + P L+ + A+ P+ IQE + +L +N I +++G+GKTAAF L
Sbjct: 7 KSFSDLGISPWLIDTLKALAIYEPTDIQEGVIAQILEG--RNCIGGAKTGSGKTAAFALP 64
Query: 138 MLSRVDSNKNYPQVLCLSPTYELAIQTGEVAAKMAKFCPEIKLKYA--VRGEELPRGS-- 193
++ + + + L L+PT ELAIQ E A + + LK+A V G ++ R S
Sbjct: 65 IIEKWSKDPSGIFALILTPTRELAIQIDEQFAALGA---NLNLKHALIVGGMDMIRQSID 121
Query: 194 -KITDHILIGTPGKMFDWGVKFG---MFDMGKIKVFVLDEADVMINRQ--GHQDQCIRIH 247
H+++ TPG++ D G + + +IK V+DEAD +++ D C +
Sbjct: 122 LSKRPHVVVATPGRLADLIRSNGEETIAGLRRIKFLVMDEADRLLSPTFADDLDDCFSV- 180
Query: 248 KCLPST--CQMMFFSATYGTAVMQFAEIIVSNPIIIRLLREEESLDNI------KQYYVK 299
LP++ Q + F+AT A+ Q N L E E+ DNI +Q Y+
Sbjct: 181 --LPASEDRQTLLFTATVTDAIRQLKYQPQKNNKPPLWLYEVET-DNISVPSTLQQSYIF 237
Query: 300 CKS-AEDKYRAICNIYGVITIGQAIIFCHTRKTASWLSEKMSKDGHSVAVLSGELTVEQR 358
S + Y AIIF + +TA + + V L E+ +R
Sbjct: 238 VSSQVREAYLVHLLTIPENAKKSAIIFVNRTRTAELIYSILRLLELRVTELHSEMVQRER 297
Query: 359 IAVLDRFRVGLEKVLITTNVLSRGIDVEQVTLVVNFDMPMDMNRKADCETYLHRIGRTGR 418
I L RFR K+L+ T+V SRG+D+ V LV+NFD+P D + Y+HR+GRT R
Sbjct: 298 INSLGRFRAEAAKILVATDVASRGLDIPSVQLVINFDLPRDP------DDYIHRVGRTAR 351
Query: 419 FGKAGIAINLIDSPQAMEICTDIEAHFGKKI 449
G++G +I+++ + + +++ IE G K+
Sbjct: 352 AGRSGESISIV-TERDVDLVHAIEDRVGTKL 381
>SPCC1494.06c |||ATP-dependent RNA helicase Dbp9
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 595
Score = 127 bits (307), Expect = 3e-30
Identities = 92/330 (27%), Positives = 169/330 (51%), Gaps = 17/330 (5%)
Query: 76 SVKTFEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMIAQSQSGTGKTAAFV 135
S KTF +L P L + ++ F P+ +Q +P LA ++++AQ+++G+GKTAA++
Sbjct: 12 SEKTFSDFNLDPRLQRAIHKCEFEKPTSVQSETIP--LALEGKDLVAQARTGSGKTAAYL 69
Query: 136 LAML------SRVDSNKNYPQVLCLSPTYELAIQTGEVAAKMAKFCPE-IK-LKYAVRGE 187
+ +L ++D N+ L L PT ELA Q V K+ FC + I+ + A
Sbjct: 70 IPILELLLKQKQIDENQRGIFALLLVPTRELAQQVYNVLEKLTAFCSKHIRFINVATNSS 129
Query: 188 ELPRGSKITD--HILIGTPGKMFDWGVKFGMFDMGKIKVFVLDEADVMINRQGHQDQCIR 245
+ + + D I+I TP + V G+ + K+K V+DEAD+M++ G+ +
Sbjct: 130 DTVQRPLLLDLPDIVIATPSRCV-VHVASGVLPLDKLKFLVIDEADLMLS-FGYNEDMKT 187
Query: 246 IHKCLPSTCQMMFFSATYGTAVMQFAEIIVSNPIIIRLLREEESLDNIKQYYVKCKSAED 305
+ + LP Q SAT + +++ NP I+ ++++E+ + QY VKC S +D
Sbjct: 188 LSRSLPRGTQSFLMSATLSKNIASLQKLVCRNPFIL-AVKDKEASGKLTQYVVKC-SEQD 245
Query: 306 KYRAICNIYGVITI-GQAIIFCHTRKTASWLSEKMSKDGHSVAVLSGELTVEQRIAVLDR 364
K+ + + I G+ +IF + L + + G VL+ EL V R+ +L++
Sbjct: 246 KFLLAYILLKLRLIKGKILIFVNEINRCYRLKLFLEQFGLKSLVLNSELPVNSRLHILEQ 305
Query: 365 FRVGLEKVLITTNVLSRGIDVEQVTLVVNF 394
+ GL +++I T+ ++E++ V+F
Sbjct: 306 YNKGLYQIIIATDESGMMGEIEELENNVDF 335
Score = 50.0 bits (114), Expect = 7e-07
Identities = 23/51 (45%), Positives = 35/51 (68%), Gaps = 6/51 (11%)
Query: 379 LSRGIDVEQVTLVVNFDMPMDMNRKADCETYLHRIGRTGRFGKAGIAINLI 429
++RG+D E V V+NFDMP ++ ++Y+HRIGRT R GK G A++ +
Sbjct: 386 VARGLDFENVACVLNFDMP------SNTKSYIHRIGRTARAGKPGTAMSFV 430
>SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 578
Score = 121 bits (292), Expect = 2e-28
Identities = 109/414 (26%), Positives = 205/414 (49%), Gaps = 25/414 (6%)
Query: 29 QETDSDDVPDTPNAADTSLLMKIIRQGLVESKLDIEIQRK-DPNSPLYS-VKTFEALHLK 86
Q+ D + + AD + ++ + L D +Q+ + N+ S ++ F L L
Sbjct: 38 QDEDDYEQEEENEDADQNTSVESESEELDNENEDERVQKSVNLNASSTSDIEKFSDLQLS 97
Query: 87 PNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMIAQSQSGTGKTAAFVLAMLSRVDSNK 146
N+ K + MGF ++IQ+ ++P LLA ++++ +++G+GKT AF++ + + + K
Sbjct: 98 ENIQKAIKEMGFETMTEIQKRSIPPLLAG--RDVLGAAKTGSGKTLAFLIPTIEMLYALK 155
Query: 147 NYPQ----VLCLSPTYELAIQTGEVAAKMAKFCPE---IKLKYAVRGEELPRGSKITDHI 199
P+ V+ +SPT ELA+Q VA ++ K+ + I + A R E + K + +
Sbjct: 156 FKPRNGTGVIIISPTRELALQIFGVAKELLKYHHQTFGIVIGGANRRAEADKLVKGVN-L 214
Query: 200 LIGTPGKMFDWGVKFGMFDMGKIKVFVLDEADVMINRQGHQDQCIRIHKCLPS-TCQMMF 258
L+ TPG++ D F ++ V+DEAD ++ G +D+ +I K LPS Q +
Sbjct: 215 LVATPGRLLDHLQNTKGFVFRNLRSLVIDEADRILEI-GFEDEMRQIMKILPSENRQTLL 273
Query: 259 FSATYGTAVMQFAEIIVS-NPIIIRLL--REEESLDNIKQYYVKCKSAEDKYRAICNIYG 315
FSAT T V A I + P+ + + + +++ ++Q YV S + ++ + +
Sbjct: 274 FSATQTTKVEDLARISLKPGPLYVNVDSGKPTSTVEGLEQGYVVVDS-DKRFLLLFSFLK 332
Query: 316 VITIGQAIIFCHTRKTASWLSEKMSKDGHSVAVLSGELTVEQRIAVLDRFRVGLEKVLIT 375
+ I+F + + +++E ++ V L G+ ++R F + +L+
Sbjct: 333 RNLKKKVIVFMSSCASVKYMAELLNYIDLPVLDLHGKQKQQRRTNTFFEFCNAEKGILLC 392
Query: 376 TNVLSRGIDVEQVTLVVNFDMPMDMNRKADCETYLHRIGRTGRFGKAGIAINLI 429
TNV +RG+D+ V +V +D P D Y+HR+GRT R G G +L+
Sbjct: 393 TNVAARGLDIPAVDWIVQYDPP------DDPRDYIHRVGRTAR-GTKGTGKSLM 439
>SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 481
Score = 116 bits (279), Expect = 7e-27
Identities = 106/366 (28%), Positives = 182/366 (49%), Gaps = 29/366 (7%)
Query: 71 NSPLYSVKTFEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMIAQSQSGTGK 130
N+P+ ++ F L NL K + IQ A+PT+ ++++A + +G+GK
Sbjct: 43 NNPVDPIEEFPEGILCENLKK----QNITECTTIQRYAIPTI--GSKRDLLACAPTGSGK 96
Query: 131 TAAFVLAMLSRVDSN-KNYPQVLCLSPTYELAIQTGEVAAKMAKFCPEIKLKYAVRGEEL 189
T A++ +L ++ + + + ++PT EL Q A K++ F +K+ + E
Sbjct: 97 TIAYLFPILQKLQLHVPGGYRAIIVAPTRELCEQIYRQAEKLS-FGTSLKIIELSKSNEK 155
Query: 190 --PRGSKITDH--ILIGTPGKMFDWGVKFGMFDMGKIKVFVLDEADVMINRQGHQDQCIR 245
+ K+ + + IGTP ++ ++ G+ K++ FV+DEAD + G +Q
Sbjct: 156 IQEKAPKLREKYDMCIGTPMRLVQ-AIQTGL-SFEKVEFFVMDEADRLFE-PGFIEQTDH 212
Query: 246 I-HKCLPSTCQMMFFSATYGTAVMQFAEIIVSNPIIIRLLREEESLDNIKQYYVKCKSAE 304
I C S FSAT + V + A+++ +PI I + ++ + D+I Q + S
Sbjct: 213 ILSACTSSNICKSLFSATIPSRVEELAKVVTVDPIRIIVGLKDAATDSIDQRLLFVGSDT 272
Query: 305 DKYRAICNIYGVITIGQ----AIIFCHTRKTASWLSEKMSKDGHSVAVLSGELTVEQRIA 360
K I + +I+ G+ +IF + A L ++ D V V+ GEL +R
Sbjct: 273 SK---IVILRQMISNGELKPRVVIFVQDIERAKALYTELLFDEIHVGVIHGELPQAKREE 329
Query: 361 VLDRFRVGLEKVLITTNVLSRGIDVEQVTLVVNFDMPMDMNRKADCETYLHRIGRTGRFG 420
L +FR G VLI T++L+RGID V +V+NFD P ++ +Y+HRIGRTGR G
Sbjct: 330 ALAKFRKGEIWVLIATDLLARGIDFHGVKMVINFDFPQSVH------SYIHRIGRTGRAG 383
Query: 421 KAGIAI 426
G A+
Sbjct: 384 NTGQAV 389
>SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 735
Score = 115 bits (276), Expect = 2e-26
Identities = 94/339 (27%), Positives = 167/339 (49%), Gaps = 23/339 (6%)
Query: 102 SKIQETALPTLLADPPQNMIAQSQSGTGKTAAFVLAMLSRVDSNK----NYPQVLCLSPT 157
++IQ+ +P+ L ++++ +++G+GKT AF++ ++ + K + L +SPT
Sbjct: 63 TEIQKQCIPSALKG--RDILGAAKTGSGKTLAFIVPLIENLYRKKWTSLDGLGALVISPT 120
Query: 158 YELAIQTGEVAAKMAK---FCPEIKLKYAVRGEELPRGSKITDHILIGTPGKMFDWGVKF 214
ELAIQT E K+ + F + + EE R S++ +IL+ TPG++ +
Sbjct: 121 RELAIQTFETLVKIGRLHSFSAGLIIGGNNYKEEKERLSRM--NILVCTPGRLLQHIDQA 178
Query: 215 GMFDMGKIKVFVLDEADVMINRQGHQDQCIRIHKCLPSTCQMMFFSATYGTAVMQFAEII 274
FD +++ +LDEAD +++ G + I LP Q M FSAT +V A +
Sbjct: 179 VNFDTSGLQMLILDEADRILD-MGFRTTLDAIVSSLPVHRQTMLFSATQTKSVKDLARLS 237
Query: 275 VSNPIIIRLLREEESL--DNIKQYYVKCKSAEDKYRAICNIYGVITIGQAIIFCHTRKTA 332
+ NP I + + S N+ Q+Y+ E K + + I+F + K
Sbjct: 238 LQNPDFISVHENDTSSTPSNLNQFYLTVPLTE-KLDILFGFIRTHLKFKTIVFLSSCKQV 296
Query: 333 SWLSE--KMSKDGHSVAVLSGELTVEQRIAVLDRFRVGLEKVLITTNVLSRGIDVEQVTL 390
++ E + + G S+ L G+ R V +F VL T++++RG+D V
Sbjct: 297 RFVYETFRRMRPGISLLHLHGKQKQTTRTEVTAKFTSSRHVVLFCTDIVARGLDFPAVDW 356
Query: 391 VVNFDMPMDMNRKADCETYLHRIGRTGRFGKAGIAINLI 429
V+ D P D+ +TY+HR+GRT R+ ++G A+ L+
Sbjct: 357 VIQLDAPEDV------DTYIHRVGRTARYNRSGNALLLL 389
>SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 848
Score = 111 bits (268), Expect = 2e-25
Identities = 85/319 (26%), Positives = 157/319 (49%), Gaps = 19/319 (5%)
Query: 7 QKAEELEISNKVAGLGLD-KKHNQETDSDDVPDTPNAADTSLLMKIIRQGLVESKLDIEI 65
Q ++E++ISN + +D NQ+ ++V + + D I L+ES
Sbjct: 5 QTSDEVDISNSLKAFPVDIATDNQKDKHENVGENVSDEDDG---NYIASKLLESNR--RT 59
Query: 66 QRKDPNSPLYSVKTFEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMIAQSQ 125
+ K N F+++ L LL+ ++ GF AP+ IQ +P LL ++++ ++
Sbjct: 60 KGKKGNG---KASNFQSMGLNQTLLRAIFKKGFKAPTPIQRKTIPLLLEG--RDVVGMAR 114
Query: 126 SGTGKTAAFVLAMLSRVDSN--KNYPQVLCLSPTYELAIQTGEVAAKMAKFCPEIKLKYA 183
+G+GKTAAFV+ M+ + S + + L LSP ELA+QT +V +K +++
Sbjct: 115 TGSGKTAAFVIPMIEHLKSTLANSNTRALILSPNRELALQTVKVVKDFSKGT-DLRSVAI 173
Query: 184 VRGEELPRGSKITD---HILIGTPGKMFDWGVKFGMFDMGKIKVFVLDEADVMINRQGHQ 240
V G L + I++ TPG+ V+ + ++ I+ V DEAD + G
Sbjct: 174 VGGVSLEEQFSLLSGKPDIVVATPGRFLHLKVEMKL-ELSSIEYVVFDEADRLFE-MGFA 231
Query: 241 DQCIRIHKCLPSTCQMMFFSATYGTAVMQFAEIIVSNPIIIRLLREEESLDNIKQYYVKC 300
Q I LP++ Q + FSAT ++ FA+ + +P+++RL E + +++ +
Sbjct: 232 AQLTEILHALPTSRQTLLFSATLPRTLVDFAKAGLQDPVLVRLDVESKVSADLQSAFFSV 291
Query: 301 KSAEDKYRAICNIYGVITI 319
K+AE + +C + +I +
Sbjct: 292 KTAEREAALLCILQDIIKL 310
Score = 74.9 bits (176), Expect = 2e-14
Identities = 37/112 (33%), Positives = 66/112 (58%), Gaps = 6/112 (5%)
Query: 323 IIFCHTRKTASWLSEKMSKDGHSVAVLSGELTVEQRIAVLDRFRVGLEKVLITTNVLSRG 382
++F T+ ++SE + + G+SV+ + G L E R+ ++ FR+G +L+ T+V SRG
Sbjct: 350 LVFVPTKHHVEYVSELLVQAGYSVSKIYGSLDQEARLNEINNFRLGKTNLLVVTDVASRG 409
Query: 383 IDVEQVTLVVNFDMPMDMNRKADCETYLHRIGRTGRFGKAGIAINLIDSPQA 434
ID+ + V+N+D P + ++HR+GRT R G+ G A +L+ + A
Sbjct: 410 IDIPLLANVINYDFP------PQPKVFVHRVGRTARAGRTGWAYSLVRAEDA 455
>SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 606
Score = 107 bits (256), Expect = 4e-24
Identities = 95/381 (24%), Positives = 180/381 (47%), Gaps = 35/381 (9%)
Query: 79 TFEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMIAQSQSGTGKTAAFVLAM 138
+F+++++ L V A GF + +Q A+P L + ++++ ++ +G+GKT A++L
Sbjct: 2 SFQSINIDKWLKNAVAAQGFKKMTPVQANAIPLFLKN--KDLVVEAVTGSGKTLAYLLPC 59
Query: 139 LSRV---DSNKNYPQVLCLSPTYELAIQTGEVAAKMAKFCPE-------IKLKYAVRGE- 187
+V D+++ L ++PT ELA Q V ++ + P+ + + G+
Sbjct: 60 FDKVTRRDTDETGLGALIVAPTRELATQIFNVTKELLAYQPDSLDGGKKLVADMYIGGKG 119
Query: 188 ----ELPRGSKITDHILIGTPGKMFDWGVKFGMFDMGKIKVFVLDEADVMINRQGHQDQC 243
+L + ++IGTPG++ + +++ +LDEAD +I+ G Q
Sbjct: 120 TLTNDLASFREKNPSVVIGTPGRLNEM---LSHISSKHLEILILDEADTLID-MGFQRTL 175
Query: 244 IRIHKCLPSTCQMMFFSATYGTAVMQFAEII-VSNPIIIRLLREEESLDNIKQYYVKCKS 302
I LP + FSAT V F +I + N + + + + +D + +S
Sbjct: 176 QSIISQLPKQRRTGLFSATMNDTVSSFLKIAGLRNSVRVSVTVTSKKIDTRTPSSLAIQS 235
Query: 303 A--EDKYRAICNIYGVITIG--QAIIFCHTRKTASWLSEKMS--KDGHSVAVLSGELTVE 356
Y+ C I+ + TI +AI+F + + + + K + L G+
Sbjct: 236 LVIPPIYKVQCMIHLLCTIEYEKAIVFFSSCASVEYFNSLFLTYKLPFEIVALHGQQVQS 295
Query: 357 QRIAVLDRFRVGLEK-VLITTNVLSRGIDVEQVTLVVNFDMPMDMNRKADCETYLHRIGR 415
R ++F+ +K VL TT++ SRG+D+ V V+ D P+D +++ HR GR
Sbjct: 296 NRSRNFEKFKKSNKKTVLFTTDIASRGLDIPNVDFVLQLDPPLDP------KSFSHRCGR 349
Query: 416 TGRFGKAGIAINLIDSPQAME 436
GR G+AG+AI L++ + E
Sbjct: 350 AGRAGRAGVAIVLLNDGREEE 370
>SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 535
Score = 105 bits (253), Expect = 1e-23
Identities = 97/363 (26%), Positives = 170/363 (46%), Gaps = 28/363 (7%)
Query: 81 EALHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMIAQSQSGTGKTAAFVLAMLS 140
E L + GF + +Q+ L + + +N + Q+++GTGKT AF+L
Sbjct: 41 EVASLSSTFKNSLSRAGFEKMTPVQQRVLNEVFPNE-ENAVVQAKTGTGKTLAFLLVAFK 99
Query: 141 RVDSNK---NYPQV--LCLSPTYELAIQTGEVAAKMAKFCPEIKLKYAVRGEELPRGSKI 195
V K N ++ + LSPT ELA+Q E A K+ + I++ YA+ G R
Sbjct: 100 DVLKGKPRLNSSKIHSVILSPTRELALQIFEEARKLT-YGTGIRVSYAIGGNSKMREENA 158
Query: 196 ----TDHILIGTPGKMFDWGVKFGMFDMGKIKVFVLDEADVMINRQGHQDQCIRIHKCLP 251
++LI TPG++ D + + F+LDEAD +++ G + + IH+ +
Sbjct: 159 IRRGNANLLIATPGRLEDHLQNPRILESLSTDSFILDEADRLMD-MGFAESILNIHEAVT 217
Query: 252 ST-CQMMFFSATYGTAVMQ-FAEIIVSNPIIIRLL--REEESLDNIKQYYVKCKSAEDKY 307
+T + + FSAT V F I+ ++ +I L E + + + Q+ ++ K + +
Sbjct: 218 TTKTRKLCFSATMPPKVSNVFRGILGTDFKLINCLDPNEPPTHERVPQFVIETK-LDKVF 276
Query: 308 RAICNIYGVITIG----QAIIFCHTRKTASWLSEKMSKDGHSVA-VLSGELTVEQRIAVL 362
+ ++ +T + I+F T ++ + +L LT QR ++
Sbjct: 277 SSSLSLLQQLTSSNPSSRIIVFLPTISMVDFVGGVLENHLKIPCFILHSGLTTAQRRSIT 336
Query: 363 DRFRVGLEKVLITTNVLSRGIDVEQVTLVVNFDMPMDMNRKADCETYLHRIGRTGRFGKA 422
+ FR +L T+V++RG+D +T VV P ++ + Y+HRIGRTGR GK
Sbjct: 337 ESFRKCQSGILFATDVVARGMDFPNITQVVQITGP------SNTDDYIHRIGRTGRAGKT 390
Query: 423 GIA 425
G A
Sbjct: 391 GEA 393
>SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 648
Score = 93.9 bits (223), Expect = 4e-20
Identities = 113/458 (24%), Positives = 208/458 (45%), Gaps = 45/458 (9%)
Query: 24 DKKHNQETDSDDVPDTPNAADTSLLMKIIRQGLVE-SKLDIEIQRKDPNSPLYSVKTFEA 82
D+K E +P TSL K+ + E S L+ E + NS V +
Sbjct: 70 DQKEASEKKKKGKRTSPTIEMTSLGSKVTSKNYNEFSTLEEEDEH---NSHGVDVSAWAH 126
Query: 83 LHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMIAQSQSGTGKTAAFVLAMLSRV 142
L P +L + GF+ P IQ +P A ++I ++ +G+GKT AF + +L
Sbjct: 127 FSLSPEMLGSLSKAGFSKPMPIQSLVIPE--ASIGFDIIGKADTGSGKTLAFGIPILEHC 184
Query: 143 DSN--KNYPQVLCLSPTYELAIQTGEVAAKMAKFCPEIKLKYAVRGEELPRGSKITD--- 197
N Y Q L ++PT ELA Q + ++ K P I++ G + + ++ +
Sbjct: 185 LRNVDAKYVQALVVAPTRELAHQICQ-HFELIKPSPNIRVMSITGGLAVQKQQRLLNKHP 243
Query: 198 HILIGTPGKMFDWGVKFGMF-DMGKIKVFVLDEADVMINRQGHQDQCIRIHKCLPSTC-- 254
H+++ TPG+++ + + + KIK VLDEAD ++ ++ H ++ ++ + L +
Sbjct: 244 HVVVATPGRLWSVINENNLTGNFKKIKCLVLDEADRLL-QKSHFEELSKLLEILGNPMHT 302
Query: 255 --QMMFFSATYGTAVMQFAEIIVSNPII-------------IRLLREEESLDNIKQYYVK 299
Q FSAT+ + Q + + I +R + + LD Q V
Sbjct: 303 QRQTFIFSATFDEGLQQRLKKNMKGNITEKYNSPMENMLKEVRFFGKPKFLDANPQSAVA 362
Query: 300 CKSAEDKYR---AICNIYGVITI----GQAIIFCHTRKTASWLSEKMSKDGHSVAVLSGE 352
+ E A ++Y I G+ ++F + + ++ +++ L +
Sbjct: 363 SRVLEGLIECAPAEKDLYLYYLIMRYPGKTMVFANGIEDIKRITPFLNELKVPSYPLHAQ 422
Query: 353 LTVEQRIAVLDRFRVGLEKVLITTNVLSRGIDVEQVTLVVNFDMPMDMNRKADCETYLHR 412
L ++R+ L++F+ + VL+ T+V +RGID+ VT V+++ +P AD Y+HR
Sbjct: 423 LDQKKRLQSLEKFKNNPKGVLVCTDVAARGIDIPSVTHVIHYHVP----HTAD--MYVHR 476
Query: 413 IGRTGRFGKAGIAINLIDSPQAMEICTDIEAHFGKKIQ 450
GRT R + G++I L+ P+ + + KKI+
Sbjct: 477 SGRTARANEDGVSI-LMCGPKELSQLKRLCYRLKKKIE 513
>SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 604
Score = 61.3 bits (142), Expect = 3e-10
Identities = 48/204 (23%), Positives = 95/204 (46%), Gaps = 30/204 (14%)
Query: 250 LPSTCQMMFFSATYGTAVMQFAEIIVSNPIIIRLLREEESLDN----------------I 293
LPS Q + FSAT + A + + NP ++ + ++ +D+ +
Sbjct: 348 LPSPLQKLVFSATLTRDPSKIASLKLHNPRLVLVQNKDMEVDDGGEIEDDAIVFSVPPTL 407
Query: 294 KQYYVKCKSAEDKYRAICNIYGVITIGQAIIFCHTRKTASWLSEKMS------KDGHSVA 347
++Y+V S +K + ++ + + F + + A+ L + S
Sbjct: 408 QEYHVSVSS--EKPILLYHLIHSKNLTNILCFVKSNEAAARLHRLLELIHESLNQSFSCG 465
Query: 348 VLSGELTVEQRIAVLDRFRVGLEKVLITTNVLSRGIDVEQVTLVVNFDMPMDMNRKADCE 407
+ + L+ ++R ++ RF G +L+ +++++RGIDV V+N+D P+ +
Sbjct: 466 LFTSSLSRDERKKIISRFATGDLNLLVCSDLMARGIDVANTQNVINYDPPLSV------R 519
Query: 408 TYLHRIGRTGRFGKAGIAINLIDS 431
+Y+HRIGRT R G+ G A L+ S
Sbjct: 520 SYVHRIGRTARAGREGFAWTLVQS 543
Score = 43.2 bits (97), Expect = 8e-05
Identities = 43/194 (22%), Positives = 90/194 (46%), Gaps = 31/194 (15%)
Query: 69 DPNSPLYSVKTFEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQ--------NM 120
DPN+ + F +L++ L++ + +Q LP LL D ++
Sbjct: 121 DPNTTV----EFSSLNISSKLVERLQKQNITRGFAVQAAVLPLLLQDGRHGPMYSYGGDV 176
Query: 121 IAQSQSGTGKTAAFVLAMLSRVDSNKNYPQVLC--LSPTYELAIQTGEV--------AAK 170
+ +G+GKT ++V+ ++ + S++ P++ C + PT EL +Q + +
Sbjct: 177 CVSAATGSGKTLSYVIPIVQCL-SHRTVPRLRCVVIVPTRELTVQVAKTFEYYMSGAGLQ 235
Query: 171 MAKFCPEIKLK---YAVRGEELPRGSKITDHILIGTPGKMFDWGVKFGMFDMGKIKVFVL 227
+ + + L+ Y + G+E ++ +L+ TPG++ D F + ++ V+
Sbjct: 236 VCAWTGQKSLRHETYQLNGDE----NECRIDVLVSTPGRLVDHIRNDESFSLQHLRYMVI 291
Query: 228 DEADVMINRQGHQD 241
DEAD +++ Q QD
Sbjct: 292 DEADRLLD-QSFQD 304
>SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 709
Score = 57.2 bits (132), Expect = 5e-09
Identities = 58/223 (26%), Positives = 105/223 (47%), Gaps = 16/223 (7%)
Query: 44 DTSLLMKIIRQGLVESKL-DIEIQRKDPNSPLYSVKTFEALHLKPNLLKGVY-AMGFNAP 101
D+ + + Q L ++++ +I ++ N+P+ + F + L L + M +AP
Sbjct: 104 DSEHFSQDVGQNLEDNQISNIGTTKEASNAPIKTTN-FAGVQLDTQLADHLNNKMNISAP 162
Query: 102 SKIQETALPTLLADPPQNMIAQSQSGTGKTAAFVLAMLSR-VDSNKNYP------QVLCL 154
+ IQ LP LL ++ ++Q+G+GKT A++L ++ R + KN + +
Sbjct: 163 TAIQSCCLPALLNTDDKDAFIEAQTGSGKTLAYLLPIVQRLIRLPKNLHTRTSGIYAVIM 222
Query: 155 SPTYELAIQTGEVAAKMAKF-CPEIKLKYAVRGEELPRGSKIT----DHILIGTPGKMFD 209
+PT EL Q VA K+ + V G E + K +ILIGTPG++ D
Sbjct: 223 APTRELCQQIYNVANKLNNNPLSHWIVSCNVIGGEKKKSEKARIRKGVNILIGTPGRLAD 282
Query: 210 WGVKFGMFDMGKIKVFVLDEADVMINRQGHQDQCIRIHKCLPS 252
D+ +++ VLDE D +++ G ++ +I L S
Sbjct: 283 HLENTEALDVSQVRWVVLDEGDRLMD-MGFEETLTKILSYLES 324
Score = 51.6 bits (118), Expect = 2e-07
Identities = 35/89 (39%), Positives = 48/89 (53%), Gaps = 10/89 (11%)
Query: 342 DGHS-VAVLSGELTVEQRIAVLDRFRVGLEK---VLITTNVLSRGIDVEQVTLVVNFDMP 397
DG S V L G L+ + R + L+ F + +L+ T+V +RG+D+ V LVV +D P
Sbjct: 465 DGKSNVYRLHGSLSQQIRTSTLNLFSSSEDSGSHILLCTDVAARGLDLPNVDLVVQYDAP 524
Query: 398 MDMNRKADCETYLHRIGRTGRFGKAGIAI 426
+ YLHRIGRT R G G AI
Sbjct: 525 FST------DDYLHRIGRTARAGHNGAAI 547
>SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces
pombe|chr 1||Partial|Manual
Length = 1887
Score = 54.8 bits (126), Expect = 2e-08
Identities = 36/112 (32%), Positives = 58/112 (51%), Gaps = 12/112 (10%)
Query: 320 GQAIIFCHTRKTASWLSEKMSKD---GHS-VAVLSGELTVEQRIAVLDRFR--VGLEKVL 373
G+AIIFC T+K ++ ++ + H+ V + +G+++ E+R D FR G +++
Sbjct: 1416 GRAIIFCRTKKDVEYIHRRLHQSDLFAHTHVTIYTGDVSDEERQMNFDAFRNANGKTRIM 1475
Query: 374 ITTNVLSRGIDVEQVTLVVNFDMPMDMNRKADCETYLHRIGRTGRFGKAGIA 425
I T GI+ V LVV++ +P A Y+ GR GR GK IA
Sbjct: 1476 IATKAFGLGINYMGVRLVVHYGLP------ASSMDYVQETGRAGRDGKYAIA 1521
>SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1919
Score = 54.8 bits (126), Expect = 2e-08
Identities = 36/112 (32%), Positives = 58/112 (51%), Gaps = 12/112 (10%)
Query: 320 GQAIIFCHTRKTASWLSEKMSKD---GHS-VAVLSGELTVEQRIAVLDRFR--VGLEKVL 373
G+AIIFC T+K ++ ++ + H+ V + +G+++ E+R D FR G +++
Sbjct: 1416 GRAIIFCRTKKDVEYIHRRLHQSDLFAHTHVTIYTGDVSDEERQMNFDAFRNANGKTRIM 1475
Query: 374 ITTNVLSRGIDVEQVTLVVNFDMPMDMNRKADCETYLHRIGRTGRFGKAGIA 425
I T GI+ V LVV++ +P A Y+ GR GR GK IA
Sbjct: 1476 IATKAFGLGINYMGVRLVVHYGLP------ASSMDYVQETGRAGRDGKYAIA 1521
>SPAC11E3.01c |swr1|SPAC2H10.03c|SNF2 family helicase
Swr1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1288
Score = 36.7 bits (81), Expect = 0.007
Identities = 24/98 (24%), Positives = 43/98 (43%), Gaps = 2/98 (2%)
Query: 321 QAIIFCHTRKTASWLSEKMSKDGHSVAVLSGELTVEQRIAVLDRFRVG--LEKVLITTNV 378
+ +IF K L + ++ GH L G +EQR + +RF + +++T
Sbjct: 1009 RVLIFTQMTKVLDILEQFLNIHGHRYLRLDGATKIEQRQILTERFNNDDKIPVFILSTRS 1068
Query: 379 LSRGIDVEQVTLVVNFDMPMDMNRKADCETYLHRIGRT 416
GI++ V+ +D + A + HRIG+T
Sbjct: 1069 GGLGINLTGADTVIFYDSDWNPQLDAQAQDRSHRIGQT 1106
>SPAC23A1.19c ||SPAC26H5.01c|RecQ type DNA helicase Hrq1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1063
Score = 35.9 bits (79), Expect = 0.012
Identities = 28/120 (23%), Positives = 51/120 (42%), Gaps = 15/120 (12%)
Query: 321 QAIIFCHTRKTASWLSE------KMSKDGHSVAVLSGE---LTVEQRIAVLDRFRVGLEK 371
+ I+FC RKT L K + G ++ + TV++R + G
Sbjct: 553 RTIVFCRVRKTCESLMRLVRQELKTKQKGDLLSKIQSYRAGYTVQERRKIESEMFNGKLY 612
Query: 372 VLITTNVLSRGIDVEQVTLVVNFDMPMDMNRKADCETYLHRIGRTGRFGKAGIAINLIDS 431
+I TN L GID+ + V+ P ++ + GR GR K+ +A+ ++++
Sbjct: 613 GIIATNALELGIDIGSLDAVITIGFPYSLS------NLRQQFGRAGRRNKSSLAVYIVET 666
>SPAC20H4.04 |mfh2||ATP-dependent 3' to 5' DNA helicase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 783
Score = 35.5 bits (78), Expect = 0.016
Identities = 19/76 (25%), Positives = 37/76 (48%), Gaps = 6/76 (7%)
Query: 343 GHSVAVLSGELTVEQRIAVLDRFRVGLEKVLITTNVLSRGIDVEQVTLVVNFDMPMDMNR 402
G + + S + Q+ +D+FR G+ L+ T++ G+D+ +++ +D R
Sbjct: 505 GQANSAYSTGMNQMQQKETIDQFRAGVINTLVATSIGEEGLDIGDTDMIICYDASSSPIR 564
Query: 403 KADCETYLHRIGRTGR 418
+ R+GRTGR
Sbjct: 565 T------IQRMGRTGR 574
>SPCC188.13c |dcr1|SPCC584.10c|dicer|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1374
Score = 33.5 bits (73), Expect = 0.064
Identities = 16/44 (36%), Positives = 24/44 (54%)
Query: 353 LTVEQRIAVLDRFRVGLEKVLITTNVLSRGIDVEQVTLVVNFDM 396
+T ++ L +F+ G VLI T V GIDV LV+ F++
Sbjct: 407 MTFRRQKDTLHKFKTGKYNVLIATAVAEEGIDVPSCNLVIRFNI 450
>SPAC1783.05 |hrp1|chd1|ATP-dependent DNA helicase
Hrp1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1373
Score = 31.5 bits (68), Expect = 0.26
Identities = 27/100 (27%), Positives = 43/100 (43%), Gaps = 7/100 (7%)
Query: 321 QAIIFCHTRKTASWLSEKMSKDGHSVAVLSGELTVEQRIAVLDRFRVGLEK---VLITTN 377
+ +IF + + L E MS G++ L G + R +D F L++T
Sbjct: 722 RVLIFSQMVRMLNILGEYMSLRGYNYQRLDGTIPASVRRVSIDHFNAPDSPDFVFLLSTR 781
Query: 378 VLSRGIDVEQVTLVVNFDMPMDMNRKADCETYL--HRIGR 415
GI++ V+ FD D N +AD + HRIG+
Sbjct: 782 AGGLGINLNTADTVIIFDS--DWNPQADLQAMARAHRIGQ 819
>SPAC20G8.08c |fft1||fun thirty related protein
Fft1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 944
Score = 29.1 bits (62), Expect = 1.4
Identities = 21/70 (30%), Positives = 32/70 (45%), Gaps = 2/70 (2%)
Query: 349 LSGELTVEQRIAVLDRFRVGLE-KV-LITTNVLSRGIDVEQVTLVVNFDMPMDMNRKADC 406
L G VE R ++D F KV L++T GI++ +V+ FD +
Sbjct: 810 LDGSTPVETRQQLIDDFHTNENYKVFLLSTKSGGFGINLTCANIVILFDCSFNPFDDMQA 869
Query: 407 ETYLHRIGRT 416
E HR+G+T
Sbjct: 870 EDRAHRVGQT 879
>SPAC20H4.09 |||ATP-dependent RNA helicase, spliceosomal
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 647
Score = 29.1 bits (62), Expect = 1.4
Identities = 21/93 (22%), Positives = 43/93 (46%), Gaps = 9/93 (9%)
Query: 310 ICNIYGVITIGQAIIFCHTRKTASWLSEKM-------SKDGHSVAVLS--GELTVEQRIA 360
+ NI G ++F RK + +K+ S+D ++ L LTV++++
Sbjct: 227 VININSTYPPGDILVFLSGRKEIEYCIKKIEDSLIHASEDCQTLVPLPLHAGLTVDEQMR 286
Query: 361 VLDRFRVGLEKVLITTNVLSRGIDVEQVTLVVN 393
V + + KV+ +TN+ I ++ + VV+
Sbjct: 287 VFNIYDGDFRKVIFSTNIAETSITIDGIVYVVD 319
>SPBC11C11.11c ||SPBC3B8.12|ATP-dependent DNA helicase Irc3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 606
Score = 27.5 bits (58), Expect = 4.2
Identities = 16/66 (24%), Positives = 28/66 (42%)
Query: 323 IIFCHTRKTASWLSEKMSKDGHSVAVLSGELTVEQRIAVLDRFRVGLEKVLITTNVLSRG 382
++FC + + + K G L GE +R ++ FR VL+ VL+ G
Sbjct: 269 LVFCINVEHSLKVCNAFRKLGIDARALFGETNDSERETLIQDFRKKKFPVLVNCMVLTEG 328
Query: 383 IDVEQV 388
D+ +
Sbjct: 329 TDIPNI 334
>SPBC106.06 |cct4||chaperonin-containing T-complex delta subunit
Cct4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 527
Score = 27.1 bits (57), Expect = 5.6
Identities = 21/72 (29%), Positives = 34/72 (47%), Gaps = 3/72 (4%)
Query: 390 LVVNFDMPMDMNRKADCETYLHRIGRTGRFGKAGIAINLIDSPQAMEICTDIEAHFGKKI 449
+VVN MD K + + YL + + KAG + LI + D+ HF K+
Sbjct: 253 VVVNDYRQMDKILKEERQ-YL--LNMCKKIKKAGANVILIQKSILRDAVNDLALHFLAKL 309
Query: 450 QLLDIEDAEEIE 461
+++ I+D E E
Sbjct: 310 KIMVIKDIERDE 321
>SPAC3H5.06c |pol1|swi7, polA|DNA polymerase alpha catalytic subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1405
Score = 27.1 bits (57), Expect = 5.6
Identities = 13/47 (27%), Positives = 23/47 (48%)
Query: 23 LDKKHNQETDSDDVPDTPNAADTSLLMKIIRQGLVESKLDIEIQRKD 69
+D+ + D +PDTP+A+ + + LVE + I+ KD
Sbjct: 865 VDRSPSNSDSDDQIPDTPSASANQGIFPRLIANLVERRRQIKGLLKD 911
>SPCC320.05 |||sulphate transporter |Schizosaccharomyces pombe|chr
3|||Manual
Length = 667
Score = 27.1 bits (57), Expect = 5.6
Identities = 18/57 (31%), Positives = 28/57 (49%), Gaps = 7/57 (12%)
Query: 175 CPEIKLKYAVRGEELPRGSKITDHILIGTPG----KMFDWGVKFGMFDMGKIKVFVL 227
C +K K + + PR I D ++I G K FDW +G+ +G+IK +L
Sbjct: 261 CRNLKSKLSAK---YPRIVSIPDAVIILLLGSFLSKKFDWHSNYGIAILGEIKTTIL 314
>SPAC25A8.01c ||snf2SR|fun thirty related protein
Fft3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 922
Score = 27.1 bits (57), Expect = 5.6
Identities = 18/61 (29%), Positives = 28/61 (45%), Gaps = 5/61 (8%)
Query: 121 IAQSQSGTGKTAAFVLAMLSRVDSNKNYPQVLCLSPTYELAIQTGEVAAKMAKFCPEIKL 180
I + G GKT + +D N N P L ++P + E AKFCP++K+
Sbjct: 409 ILADEMGLGKTCQTIAFFSLLMDKNINGPH-LVIAPASTMENWLRE----FAKFCPKLKI 463
Query: 181 K 181
+
Sbjct: 464 E 464
>SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase
Snf22|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1680
Score = 26.6 bits (56), Expect = 7.4
Identities = 16/71 (22%), Positives = 33/71 (46%), Gaps = 3/71 (4%)
Query: 349 LSGELTVEQRIAVLDRFRVGLEKV---LITTNVLSRGIDVEQVTLVVNFDMPMDMNRKAD 405
L G + R ++L +F V +++T G++++ V+ FD + ++
Sbjct: 1233 LDGSTKSDDRCSLLAQFNDPKSDVYIFMLSTRAGGLGLNLQTADTVIIFDTDWNPHQDLQ 1292
Query: 406 CETYLHRIGRT 416
+ HRIG+T
Sbjct: 1293 AQDRAHRIGQT 1303
>SPCC553.01c ||SPCC736.01c|meiotic chromosome segregation
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 715
Score = 26.6 bits (56), Expect = 7.4
Identities = 20/67 (29%), Positives = 32/67 (47%), Gaps = 2/67 (2%)
Query: 15 SNKVAGLGLDKKHNQETDSDDVPDTPNAADTSLLMKIIRQGLVESKLDIEIQRKDPNSPL 74
SNK GL D + + ++ P + T L + ++R+ + + I I DP+ L
Sbjct: 322 SNKNDGLNDDHQRQDSSVAEPSPTSKRLRLTRLPLPLLRKPTGKRQNFINITVTDPSKNL 381
Query: 75 Y--SVKT 79
Y SVKT
Sbjct: 382 YERSVKT 388
>SPAC1250.01 |snf21|SPAC29A4.21|ATP-dependent DNA helicase
Snf21|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1199
Score = 26.6 bits (56), Expect = 7.4
Identities = 17/71 (23%), Positives = 32/71 (45%), Gaps = 3/71 (4%)
Query: 349 LSGELTVEQRIAVLDRFRVGLEKV---LITTNVLSRGIDVEQVTLVVNFDMPMDMNRKAD 405
L G + R +L F +V L++T G++++ V+ FD + ++
Sbjct: 782 LDGSTKADDRSKLLGVFNDPTAEVNLFLLSTRAGGLGLNLQTADTVIIFDSDWNPHQDLQ 841
Query: 406 CETYLHRIGRT 416
+ HRIG+T
Sbjct: 842 AQDRAHRIGQT 852
>SPAC26H5.06 |pot1||telomere end-binding protein Pot1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 555
Score = 26.2 bits (55), Expect = 9.7
Identities = 14/46 (30%), Positives = 23/46 (50%)
Query: 76 SVKTFEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMI 121
S F A LK + + A N P+ ++ T + T+L P QN++
Sbjct: 357 SENPFIAHELKQTSVNEITAHVINEPASLKLTTISTILHAPLQNLL 402
Database: spombe
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.319 0.135 0.390
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,036,594
Number of Sequences: 5004
Number of extensions: 83713
Number of successful extensions: 364
Number of sequences better than 10.0: 41
Number of HSP's better than 10.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 230
Number of HSP's gapped (non-prelim): 54
length of query: 465
length of database: 2,362,478
effective HSP length: 75
effective length of query: 390
effective length of database: 1,987,178
effective search space: 774999420
effective search space used: 774999420
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 55 (26.2 bits)
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