GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001223-TA|BGIBMGA001223-PA|IPR014001|DEAD-like
helicases, N-terminal, IPR001650|Helicase, C-terminal,
IPR014021|Helicase superfamily 1 and 2 ATP-binding, IPR014014|DEAD-box
RNA helicase Q motif, IPR011545|DEAD/DEAH box helicase, N-terminal
         (465 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.      143   3e-36
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    27   0.25 
AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase pro...    23   4.1  
AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    22   9.5  

>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score =  143 bits (346), Expect = 3e-36
 Identities = 116/424 (27%), Positives = 208/424 (49%), Gaps = 31/424 (7%)

Query: 37  PDTPNAADTSLLMKIIRQGLVESKLD-IEIQRKDPNSPLYSVKTFEALHLKPNLLKGVYA 95
           P+ PN  + SL    +  G+   K D I++     N P   +++FEA  L+  +L  +  
Sbjct: 156 PELPND-EKSLFENGVEIGINFDKYDNIQVNVSGDNVP-QPIESFEAAGLRNIVLDNIKK 213

Query: 96  MGFNAPSKIQETALPTLLADPPQNMIAQSQSGTGKTAAFVLAMLSR---------VDSNK 146
            G+  P+ +Q+ ALP ++    ++++A +Q+G+GKTAAF + +++          V S  
Sbjct: 214 SGYKKPTPVQKHALPIIMNG--RDLMACAQTGSGKTAAFAVPIINTLLERSVDLVVTSTY 271

Query: 147 NYPQVLCLSPTYELAIQTGEVAAKMAKFCPEIKLKYAVRGEEL--PRGSKITD-HILIGT 203
             PQV+ +SPT EL IQ  +   K +     +K   A  G  +   RG      HIL+ T
Sbjct: 272 CEPQVVIVSPTRELTIQIWQQIVKFS-LNSILKTVVAYGGTSVMHQRGKLSAGCHILVAT 330

Query: 204 PGKMFDWGVKFGMFDMGKIKVFVLDEADVMINRQ--GHQDQCIRIHKCLP-STCQMMFFS 260
           PG++ D+ V+ G      ++  VLDEAD M++       ++ +     +P    Q + FS
Sbjct: 331 PGRLLDF-VEKGRVKFSSVQFLVLDEADRMLDMGFLPSIEKMVDHETMVPLGERQTLMFS 389

Query: 261 ATYGTAVMQFAEIIVSNPIIIRLLREEESLDNIKQ--YYVKCKSAEDKYRAICNIYGVI- 317
           AT+   V   A   ++N + + +     +  +++Q  Y V     +D  + I        
Sbjct: 390 ATFPDEVQHLARRFLNNYLFLAVGIVGGACSDVEQNFYEVARNKKKDLLKEILERENDSG 449

Query: 318 TIGQAIIFCHTRKTASWLSEKMSKDGHSVAVLSGELTVEQRIAVLDRFRVGLEKVLITTN 377
           T+G  ++F   +K A +++  +S++ +    + G+    QR   L  F+ G   +L+ T 
Sbjct: 450 TLGGTLVFVEMKKKADFIAVFLSENNYPTTSIHGDRLQRQREEALADFKSGRMSILVATA 509

Query: 378 VLSRGIDVEQVTLVVNFDMPMDMNRKADCETYLHRIGRTGRFGKAGIAINLIDSPQAMEI 437
           V +RG+D++ V+ V+N+D+P  +      + Y+HRIGRTGR G  G A +  D  +   +
Sbjct: 510 VAARGLDIKNVSHVINYDLPKGI------DEYVHRIGRTGRVGNRGRATSFFDPEEDAPL 563

Query: 438 CTDI 441
             D+
Sbjct: 564 RGDL 567


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 27.5 bits (58), Expect = 0.25
 Identities = 21/59 (35%), Positives = 30/59 (50%), Gaps = 4/59 (6%)

Query: 32  DSDDVPDTPNAADTSLLMKIIRQGLVESKLDIEIQRKDPNSPLYSVKTFEALHLKPNLL 90
           DSDD  D  N  D S     IR  +++   + EI R   NSPL  ++  + LHL+ N +
Sbjct: 195 DSDDGSDG-NDGDESSCRADIR--ILDLSRN-EITRLQENSPLLDLRQLQELHLQRNAI 249


>AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase
           protein.
          Length = 588

 Score = 23.4 bits (48), Expect = 4.1
 Identities = 19/68 (27%), Positives = 31/68 (45%)

Query: 327 HTRKTASWLSEKMSKDGHSVAVLSGELTVEQRIAVLDRFRVGLEKVLITTNVLSRGIDVE 386
           HT   +    E+  KD  S   L   LT  ++  VL +    +E +  T   + R  + E
Sbjct: 442 HTSYKSGLNLEQEKKDSISHYHLYTNLTALRKRDVLKKGNFTIEILNKTVLAVVRQSEEE 501

Query: 387 QVTLVVNF 394
            V+L++NF
Sbjct: 502 AVSLLINF 509


>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 22.2 bits (45), Expect = 9.5
 Identities = 18/69 (26%), Positives = 29/69 (42%), Gaps = 1/69 (1%)

Query: 11  ELEISNKVAGLGLDKKHNQ-ETDSDDVPDTPNAADTSLLMKIIRQGLVESKLDIEIQRKD 69
           E+EIS      G DK++++ E  +D+V    N           R+   +S L     R  
Sbjct: 299 EIEISQNSVSTGSDKENHKTEEPNDEVATYDNTPRDFPYYMYSREQYSQSHLISNENRDF 358

Query: 70  PNSPLYSVK 78
             +P  SV+
Sbjct: 359 QTTPTVSVE 367


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.319    0.135    0.390 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 121,964
Number of Sequences: 429
Number of extensions: 4919
Number of successful extensions: 12
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 3
Number of HSP's gapped (non-prelim): 4
length of query: 465
length of database: 140,377
effective HSP length: 60
effective length of query: 405
effective length of database: 114,637
effective search space: 46427985
effective search space used: 46427985
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 45 (22.2 bits)