Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001223-TA|BGIBMGA001223-PA|IPR014001|DEAD-like
helicases, N-terminal, IPR001650|Helicase, C-terminal,
IPR014021|Helicase superfamily 1 and 2 ATP-binding, IPR014014|DEAD-box
RNA helicase Q motif, IPR011545|DEAD/DEAH box helicase, N-terminal
(465 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g53110.1 68416.m05853 DEAD/DEAH box helicase, putative RNA he... 263 1e-70
At3g13920.1 68416.m01758 eukaryotic translation initiation facto... 255 5e-68
At1g72730.1 68414.m08410 eukaryotic translation initiation facto... 255 5e-68
At3g19760.1 68416.m02501 eukaryotic translation initiation facto... 254 1e-67
At1g51380.1 68414.m05780 eukaryotic translation initiation facto... 252 4e-67
At1g54270.1 68414.m06187 eukaryotic translation initiation facto... 250 2e-66
At4g00660.2 68417.m00091 DEAD/DEAH box helicase, putative simila... 214 1e-55
At4g00660.1 68417.m00090 DEAD/DEAH box helicase, putative simila... 214 1e-55
At3g61240.2 68416.m06854 DEAD/DEAH box helicase, putative (RH12)... 207 1e-53
At3g61240.1 68416.m06853 DEAD/DEAH box helicase, putative (RH12)... 207 1e-53
At2g45810.1 68415.m05697 DEAD/DEAH box helicase, putative 204 7e-53
At5g11200.1 68418.m01309 DEAD/DEAH box helicase, putative 175 5e-44
At5g11170.1 68418.m01305 DEAD/DEAH box helicase, putative (RH15)... 175 5e-44
At5g60990.1 68418.m07651 DEAD/DEAH box helicase, putative (RH10)... 159 3e-39
At3g06480.1 68416.m00750 DEAD box RNA helicase, putative similar... 158 6e-39
At2g33730.1 68415.m04134 DEAD box RNA helicase, putative similar... 156 3e-38
At5g11170.2 68418.m01306 DEAD/DEAH box helicase, putative (RH15)... 155 4e-38
At3g01540.3 68416.m00084 DEAD box RNA helicase (DRH1) identical ... 154 1e-37
At3g01540.2 68416.m00083 DEAD box RNA helicase (DRH1) identical ... 154 1e-37
At3g01540.1 68416.m00082 DEAD box RNA helicase (DRH1) identical ... 154 1e-37
At1g77050.1 68414.m08971 DEAD/DEAH box helicase, putative simila... 150 2e-36
At1g16280.1 68414.m01949 DEAD/DEAH box helicase, putative simila... 145 5e-35
At1g55150.1 68414.m06298 DEAD box RNA helicase, putative (RH20) ... 144 8e-35
At5g26742.1 68418.m03161 DEAD box RNA helicase (RH3) nearly iden... 144 1e-34
At5g14610.1 68418.m01713 DEAD box RNA helicase, putative similar... 142 3e-34
At3g58570.1 68416.m06528 DEAD box RNA helicase, putative similar... 141 8e-34
At5g08620.1 68418.m01025 DEAD box RNA helicase (RH25) identical ... 141 1e-33
At2g47330.1 68415.m05908 DEAD/DEAH box helicase, putative simila... 141 1e-33
At5g63120.2 68418.m07924 ethylene-responsive DEAD box RNA helica... 140 1e-33
At3g09720.1 68416.m01151 DEAD/DEAH box helicase, putative simila... 140 1e-33
At3g58510.2 68416.m06522 DEAD box RNA helicase, putative (RH11) ... 139 4e-33
At3g58510.1 68416.m06521 DEAD box RNA helicase, putative (RH11) ... 139 4e-33
At3g22310.1 68416.m02818 DEAD box RNA helicase, putative (RH9) s... 138 1e-32
At4g16630.1 68417.m02514 DEAD/DEAH box helicase, putative (RH28)... 136 2e-32
At3g02065.2 68416.m00170 DEAD/DEAH box helicase family protein c... 136 2e-32
At5g08610.1 68418.m01024 DEAD box RNA helicase (RH26) strong sim... 136 4e-32
At2g42520.1 68415.m05262 DEAD box RNA helicase, putative similar... 135 7e-32
At3g22330.1 68416.m02820 DEAD box RNA helicase, putative similar... 134 9e-32
At5g65900.1 68418.m08295 DEAD/DEAH box helicase, putative contai... 131 8e-31
At5g51280.1 68418.m06357 DEAD-box protein abstrakt, putative 130 2e-30
At4g33370.1 68417.m04744 DEAD-box protein abstrakt, putative RNA... 127 2e-29
At4g34910.1 68417.m04950 DEAD/DEAH box helicase, putative (RH16)... 125 5e-29
At1g20920.1 68414.m02619 DEAD box RNA helicase, putative similar... 125 7e-29
At5g63630.1 68418.m07989 DEAD box RNA helicase, putative strong ... 122 5e-28
At1g31970.1 68414.m03931 DEAD/DEAH box helicase, putative simila... 122 7e-28
At1g63250.1 68414.m07150 DEAD box RNA helicase, putative similar... 118 8e-27
At2g07750.1 68415.m01003 DEAD box RNA helicase, putative similar... 116 3e-26
At1g71370.1 68414.m08239 DEAD/DEAH box helicase, putative simila... 116 4e-26
At5g62190.1 68418.m07807 DEAD box RNA helicase (PRH75) nearly id... 114 1e-25
At3g02065.1 68416.m00171 DEAD/DEAH box helicase family protein c... 112 5e-25
At3g18600.1 68416.m02364 DEAD/DEAH box helicase, putative non-co... 110 2e-24
At5g54910.1 68418.m06839 DEAD/DEAH box helicase, putative 109 3e-24
At5g05450.1 68418.m00587 DEAD/DEAH box helicase, putative (RH18) 105 6e-23
At5g63120.1 68418.m07925 ethylene-responsive DEAD box RNA helica... 104 1e-22
At4g09730.1 68417.m01598 DEAD/DEAH box helicase, putative RNA he... 101 1e-21
At3g06980.1 68416.m00829 DEAD/DEAH box helicase, putative contai... 81 1e-15
At1g71280.1 68414.m08226 DEAD/DEAH box helicase, putative contai... 75 8e-14
At3g16840.1 68416.m02150 DEAD/DEAH box helicase, putative (RH13)... 73 3e-13
At1g12770.1 68414.m01482 DEAD/DEAH box helicase family protein /... 68 2e-11
At3g09620.1 68416.m01141 DEAD/DEAH box helicase, putative simila... 66 4e-11
At4g15850.1 68417.m02410 DEAD/DEAH box helicase, putative simila... 59 7e-09
At2g40700.1 68415.m05021 DEAD/DEAH box helicase, putative (RH17)... 58 9e-09
At5g19210.2 68418.m02287 DEAD/DEAH box helicase, putative EUKARY... 54 2e-07
At5g19210.1 68418.m02288 DEAD/DEAH box helicase, putative EUKARY... 53 4e-07
At4g35740.1 68417.m05072 DNA helicase (RECQl3) identical to DNA ... 50 3e-06
At4g35740.2 68417.m05073 DNA helicase (RECQl3) identical to DNA ... 49 6e-06
At1g10930.1 68414.m01255 DNA helicase (RECQl4A) nearly identical... 43 4e-04
At1g35530.1 68414.m04411 DEAD/DEAH box helicase, putative low si... 42 9e-04
At1g27880.1 68414.m03416 ATP-dependent DNA helicase, putative si... 39 0.006
At1g59990.1 68414.m06758 DEAD/DEAH box helicase, putative (RH22)... 38 0.011
At3g03300.1 68416.m00327 DEAD/DEAH box helicase carpel factory-r... 38 0.014
At1g12700.1 68414.m01473 helicase domain-containing protein / pe... 38 0.019
At4g32700.1 68417.m04655 DNA-directed DNA polymerase family prot... 37 0.033
At2g06990.1 68415.m00800 HUA enhancer 2 (HEN2) / DExH-box RNA he... 37 0.033
At1g31360.1 68414.m03838 DNA helicase, putative (RECQl2) nearly ... 36 0.075
At1g60930.1 68414.m06858 DNA helicase, putative strong similarit... 35 0.100
At5g63950.1 68418.m08030 SNF2 domain-containing protein / helica... 35 0.13
At2g01440.1 68415.m00067 ATP-dependent DNA helicase, putative 35 0.13
At3g02060.1 68416.m00169 DEAD/DEAH box helicase, putative simila... 34 0.17
At1g01040.1 68414.m00004 DEAD/DEAH box helicase carpel factory /... 34 0.17
At3g12810.1 68416.m01598 SNF2 domain-containing protein / helica... 32 0.70
At5g27680.1 68418.m03319 DEAD/DEAH box helicase, putative simila... 32 0.93
At4g01020.1 68417.m00137 helicase domain-containing protein / IB... 32 0.93
At5g20320.1 68418.m02418 DEAD/DEAH box helicase, putative simila... 31 1.2
At5g05130.1 68418.m00544 SNF2 domain-containing protein / helica... 31 1.6
At3g60040.1 68416.m06705 F-box family protein contains a novel d... 31 1.6
At1g11100.1 68414.m01271 SNF2 domain-containing protein / helica... 31 1.6
At5g15570.1 68418.m01823 expressed protein hypothetical protein ... 31 2.1
At3g05740.1 68416.m00644 DNA helicase (RECQI1) identical to DNA ... 31 2.1
At2g13370.1 68415.m01476 chromodomain-helicase-DNA-binding famil... 31 2.1
At3g19960.1 68416.m02526 myosin (ATM) nearly identical to myosin... 30 2.8
At4g19710.2 68417.m02895 bifunctional aspartate kinase/homoserin... 30 3.7
At4g19710.1 68417.m02894 bifunctional aspartate kinase/homoserin... 30 3.7
At2g18760.1 68415.m02184 SNF2 domain-containing protein / helica... 30 3.7
At1g50360.1 68414.m05645 myosin family protein contains Pfam pro... 30 3.7
At5g43820.1 68418.m05358 pentatricopeptide (PPR) repeat-containi... 29 6.5
At3g42670.1 68416.m04437 SNF2 domain-containing protein / helica... 29 6.5
At4g30350.1 68417.m04313 heat shock protein-related contains sim... 29 8.7
At2g02090.1 68415.m00145 SNF2 domain-containing protein / helica... 29 8.7
>At3g53110.1 68416.m05853 DEAD/DEAH box helicase, putative RNA
helicase, Mus musculus, PIR:I49731
Length = 496
Score = 263 bits (645), Expect = 1e-70
Identities = 159/448 (35%), Positives = 247/448 (55%), Gaps = 14/448 (3%)
Query: 25 KKHNQETDSDDVPDTPNAADT-SLLMKIIRQGLVESKLDIEIQR-KDPNSPLYSVKTFEA 82
KK D DD + + ++ S+ + ++E D I+ ++P S FE
Sbjct: 36 KKWGDVEDDDDEEEAVSELNSLSIKEEEKPDSILEEPEDSNIKAVTSGDTPYTSASRFED 95
Query: 83 LHLKPNLLKGVYA-MGFNAPSKIQETALPTLLADPPQNMIAQSQSGTGKTAAFVLAMLSR 141
L+L P L+KG+Y M F PSKIQ +LP ++ P +++IAQ+ +G+GKT FVL MLSR
Sbjct: 96 LNLSPELMKGLYVEMKFEKPSKIQAISLPMIMTPPHKHLIAQAHNGSGKTTCFVLGMLSR 155
Query: 142 VDSNKNYPQVLCLSPTYELAIQTGEVAAKMAKF---CPEIKLKYAVRG-EELPRGSKITD 197
VD PQ LC+ PT ELA Q EV KM KF E+ + + RG RG+ ++
Sbjct: 156 VDPTLREPQALCICPTRELANQNMEVLQKMGKFTGITAELAVPDSTRGAPAATRGAPVSA 215
Query: 198 HILIGTPGKMFDWGVKFGMFDMGKIKVFVLDEADVMINRQGHQDQCIRIHKCL---PSTC 254
H++IGTPG + W + F + +K+ V DEAD M+ G +D ++I K +
Sbjct: 216 HVVIGTPGTLKKW-MAFKRLGLNHLKILVFDEADHMLATDGFRDDSLKIMKDIGRVNPNF 274
Query: 255 QMMFFSATYGTAVMQFAEIIVSNPIIIRLLREEESLDNIKQYYVKCKSAEDKYRAICN-I 313
Q++ FSAT+ V F V +P + + RE+ +LD++KQY V C ++K I + I
Sbjct: 275 QVLLFSATFNETVKDFVARTVKDPNQLFVKREDLALDSVKQYKVVCPKEQNKIEVIKDQI 334
Query: 314 YGVITIGQAIIFCHTRKTASWLSEKMSKDGHSVAVLSGELTVEQRIAVLDRFRVGLEKVL 373
+ IGQ IIF T+ +A + + +++ G+ V + G LT R ++ F+ L +VL
Sbjct: 335 MELGDIGQTIIFVKTKASAQKVHKALAEMGYDVTSVHGNLTESDRDKIVKEFKECLTQVL 394
Query: 374 ITTNVLSRGIDVEQVTLVVNFDMPMDMNR-KADCETYLHRIGRTGRFGKAGIAIN-LIDS 431
I T+V++RG D ++V LVVN+++P + D E YLHR+GR GRFG+ G N L+D
Sbjct: 395 IATDVIARGFDQQRVNLVVNYNLPTKYETGEPDYEVYLHRVGRAGRFGRKGAVFNLLLDD 454
Query: 432 PQAMEICTDIEAHFGKKIQLLDIEDAEE 459
E+ IE +F ++ + ++EE
Sbjct: 455 GWDKEVMEKIEKYFEANVKEIKSWNSEE 482
>At3g13920.1 68416.m01758 eukaryotic translation initiation factor
4A-1 / eIF-4A-1 eIF-4A-1 gi:15293046, gi:15450485;
contains Pfam profile PF00270: DEAD/DEAH box helicase;
contains Pfam profile PF00271: Helicase conserved
C-terminal domain
Length = 412
Score = 255 bits (624), Expect = 5e-68
Identities = 139/355 (39%), Positives = 213/355 (60%), Gaps = 14/355 (3%)
Query: 78 KTFEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMIAQSQSGTGKTAAFVLA 137
++F+A+ L+ NLL+G+YA GF PS IQ+ + ++I Q+QSGTGKTA F
Sbjct: 39 ESFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKG--LDVIQQAQSGTGKTATFCSG 96
Query: 138 MLSRVDSNKNYPQVLCLSPTYELAIQTGEVAAKMAKFCPEIKLKYAVRGEELPRGSKITD 197
+L ++D + Q L L+PT ELA Q +V + + +K+ V G + +I
Sbjct: 97 VLQQLDFSLIQCQALVLAPTRELAQQIEKVMRALGDYLG-VKVHACVGGTSVREDQRILQ 155
Query: 198 ---HILIGTPGKMFDWGVKFGMFDMGKIKVFVLDEADVMINRQGHQDQCIRIHKCLPSTC 254
H+++GTPG++FD +K IK+FVLDEAD M++R G +DQ I + LP
Sbjct: 156 AGVHVVVGTPGRVFDM-LKRQSLRADNIKMFVLDEADEMLSR-GFKDQIYDIFQLLPPKI 213
Query: 255 QMMFFSATYGTAVMQFAEIIVSNPIIIRLLREEESLDNIKQYYVKCKSAEDKYRAICNIY 314
Q+ FSAT ++ +S P+ I + R+E +L+ IKQ+YV + E K +C++Y
Sbjct: 214 QVGVFSATMPPEALEITRKFMSKPVRILVKRDELTLEGIKQFYVNVEKEEWKLETLCDLY 273
Query: 315 GVITIGQAIIFCHTRKTASWLSEKMSKDGHSVAVLSGELTVEQRIAVLDRFRVGLEKVLI 374
+ I Q++IF +TR+ WL++KM H+V+ G++ R ++ FR G +VLI
Sbjct: 274 ETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLI 333
Query: 375 TTNVLSRGIDVEQVTLVVNFDMPMDMNRKADCETYLHRIGRTGRFGKAGIAINLI 429
TT++L+RGIDV+QV+LV+NFD+P E YLHRIGR+GRFG+ G+AIN +
Sbjct: 334 TTDLLARGIDVQQVSLVINFDLP------TQPENYLHRIGRSGRFGRKGVAINFV 382
>At1g72730.1 68414.m08410 eukaryotic translation initiation factor
4A, putative / eIF-4A, putative similar to Eukaryotic
initiation factor 4A-10 GB:P41382 [Nicotiana tabacum];
identical to (putative) RNA helicase GB:CAA09211
[Arabidopsis thaliana] (Nucleic Acids Res. 27 (2),
628-636 (1999))
Length = 414
Score = 255 bits (624), Expect = 5e-68
Identities = 141/377 (37%), Positives = 223/377 (59%), Gaps = 15/377 (3%)
Query: 79 TFEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMIAQSQSGTGKTAAFVLAM 138
+F+A+ L+P+LL+G+YA GF PS IQ+ + ++I Q+QSGTGKTA F +
Sbjct: 42 SFDAMELQPDLLRGIYAYGFEKPSAIQQRGIIPFCKG--LDVIQQAQSGTGKTATFCSGV 99
Query: 139 LSRVDSNKNYPQVLCLSPTYELAIQTGEVAAKMAKFCPEIKLKYAVRGEELPRGSKITD- 197
L ++D + Q L L+PT ELA Q +V + + +K + V G + ++
Sbjct: 100 LQQLDISLVQCQALVLAPTRELAQQIEKVMRALGDYLG-VKAQACVGGTSVREDQRVLQS 158
Query: 198 --HILIGTPGKMFDWGVKFGMFDMGKIKVFVLDEADVMINRQGHQDQCIRIHKCLPSTCQ 255
H+++GTPG++FD ++ IK+FVLDEAD M++R G +DQ I + LPS Q
Sbjct: 159 GVHVVVGTPGRVFDL-LRRQSLRADAIKMFVLDEADEMLSR-GFKDQIYDIFQLLPSKVQ 216
Query: 256 MMFFSATYGTAVMQFAEIIVSNPIIIRLLREEESLDNIKQYYVKCKSAEDKYRAICNIYG 315
+ FSAT ++ ++ P+ I + R+E +L+ IKQ+YV E K +C++Y
Sbjct: 217 VGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVDKEEWKLETLCDLYE 276
Query: 316 VITIGQAIIFCHTRKTASWLSEKMSKDGHSVAVLSGELTVEQRIAVLDRFRVGLEKVLIT 375
+ I Q++IF +TR+ WL++KM H+V+ G++ R ++ FR G +VLIT
Sbjct: 277 TLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLIT 336
Query: 376 TNVLSRGIDVEQVTLVVNFDMPMDMNRKADCETYLHRIGRTGRFGKAGIAINLIDSPQAM 435
T++L+RGIDV+QV+LV+NFD+P E YLHRIGR+GRFG+ G+AIN + S +
Sbjct: 337 TDLLARGIDVQQVSLVINFDLP------TQPENYLHRIGRSGRFGRKGVAINFMTS-EDE 389
Query: 436 EICTDIEAHFGKKIQLL 452
+ DI+ + ++ L
Sbjct: 390 RMMADIQRFYNVVVEEL 406
>At3g19760.1 68416.m02501 eukaryotic translation initiation factor
4A, putative / eIF-4A, putative / DEAD box RNA helicase,
putative contains DEAD/DEAH helicase domain; similar to
RNA helicase GB:CAA09195 from [Arabidopsis thaliana];
identical to cDNA DEAD box RNA helicase, RH2 GI:3775984
Length = 408
Score = 254 bits (621), Expect = 1e-67
Identities = 141/387 (36%), Positives = 235/387 (60%), Gaps = 15/387 (3%)
Query: 77 VKTFEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMIAQSQSGTGKTAAFVL 136
+ +F + +K ++L+GVY GF PS IQ+ A+ +L +++IAQ+QSGTGKT+ L
Sbjct: 34 ITSFNDMGIKEDVLRGVYEYGFEKPSAIQQRAVMPILQG--RDVIAQAQSGTGKTSMIAL 91
Query: 137 AMLSRVDSNKNYPQVLCLSPTYELAIQTGEVAAKMAKFCPEIKLKYAVRGEELPRGSKIT 196
++ VD++ Q L LSPT ELA QT E + I+ + G + +
Sbjct: 92 SVCQVVDTSSREVQALILSPTRELATQT-EKTIQAIGLHANIQAHACIGGNSVGEDIRKL 150
Query: 197 DH---ILIGTPGKMFDWGVKFGMFDMGKIKVFVLDEADVMINRQGHQDQCIRIHKCLPST 253
+H ++ GTPG++ D +K IK+ +LDE+D M++R G +DQ +++ LP
Sbjct: 151 EHGVHVVSGTPGRVCDM-IKRRSLRTRAIKLLILDESDEMLSR-GFKDQIYDVYRYLPPD 208
Query: 254 CQMMFFSATYGTAVMQFAEIIVSNPIIIRLLREEESLDNIKQYYVKCKSAEDKYRAICNI 313
Q+ SAT +++ ++ P+ I + R+E +L+ IKQ++V + E K+ +C++
Sbjct: 209 LQVCLVSATLPHEILEMTSKFMTEPVKILVKRDELTLEGIKQFFVAVEKEEWKFDTLCDL 268
Query: 314 YGVITIGQAIIFCHTRKTASWLSEKMSKDGHSVAVLSGELTVEQRIAVLDRFRVGLEKVL 373
Y +TI QA+IFC+T++ +LSEKM +V+ + G++ ++R A+++ FR G +VL
Sbjct: 269 YDTLTITQAVIFCNTKRKVDYLSEKMRSHNFTVSSMHGDMPQKERDAIMNEFRSGDSRVL 328
Query: 374 ITTNVLSRGIDVEQVTLVVNFDMPMDMNRKADCETYLHRIGRTGRFGKAGIAINLIDSPQ 433
ITT+V +RGIDV+QV+LV+N+D+P NR E Y+HRIGR+GRFG+ G+AIN + S
Sbjct: 329 ITTDVWARGIDVQQVSLVINYDLP--NNR----ELYIHRIGRSGRFGRKGVAINFVKSDD 382
Query: 434 AMEICTDIEAHFGKKIQLLDIEDAEEI 460
++I DIE ++ +I + + A+ I
Sbjct: 383 -IKILRDIEQYYSTQIDEMPMNVADLI 408
>At1g51380.1 68414.m05780 eukaryotic translation initiation factor
4A, putative / eIF-4A, putative
Length = 392
Score = 252 bits (617), Expect = 4e-67
Identities = 141/397 (35%), Positives = 234/397 (58%), Gaps = 15/397 (3%)
Query: 57 VESKLDIEIQRKDPNSPLYSVKTFEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLADP 116
+E LD E + + +K+F+ + + +L+GVY G+ PS+IQ+ AL +L
Sbjct: 1 MEGTLDEENLVFETTKGIKPIKSFDDMGMNDKVLRGVYDYGYKKPSEIQQRALVPILKG- 59
Query: 117 PQNMIAQSQSGTGKTAAFVLAMLSRVDSNKNYPQVLCLSPTYELAIQTGEVAAKMAKFCP 176
+++IAQ+QSGTGKT+ +++ V+ + QVL LSP+ ELA QT + +
Sbjct: 60 -RDVIAQAQSGTGKTSMIAISVCQIVNISSRKVQVLVLSPSRELASQTEKTIQAIGAHT- 117
Query: 177 EIKLKYAVRGEELPRGSKITD---HILIGTPGKMFDWGVKFGMFDMGKIKVFVLDEADVM 233
I+ + G+ + K + H + GTPG+++D +K G +K+ VLDE+D M
Sbjct: 118 NIQAHACIGGKSIGEDIKKLERGVHAVSGTPGRVYDM-IKRGSLQTKAVKLLVLDESDEM 176
Query: 234 INRQGHQDQCIRIHKCLPSTCQMMFFSATYGTAVMQFAEIIVSNPIIIRLLREEESLDNI 293
+++ G +DQ +++ LP Q+ SAT +++ E +++P+ I + +E +L+ I
Sbjct: 177 LSK-GLKDQIYDVYRALPHDIQVCLISATLPQEILEMTEKFMTDPVRILVKPDELTLEGI 235
Query: 294 KQYYVKCKSAEDKYRAICNIYGVITIGQAIIFCHTRKTASWLSEKMSKDGHSVAVLSGEL 353
KQYYV E K+ +C++YG +TI QAIIFC+TR+ WL+EKM V+ + G+
Sbjct: 236 KQYYVDVDKEEWKFDTLCDLYGRLTINQAIIFCNTRQKVDWLTEKMRSSNFIVSSMHGDK 295
Query: 354 TVEQRIAVLDRFRVGLEKVLITTNVLSRGIDVEQVTLVVNFDMPMDMNRKADCETYLHRI 413
++R ++++FR +VLI ++V +RGIDV+ V+ V+N+D+P + E Y+HRI
Sbjct: 296 RQKERDDIMNQFRSFKSRVLIASDVWARGIDVQTVSHVINYDIPNNP------ELYIHRI 349
Query: 414 GRTGRFGKAGIAINLIDSPQAMEICTDIEAHFGKKIQ 450
GR GRFG+ G+AIN + S M+ DIE H+G KI+
Sbjct: 350 GRAGRFGREGVAINFVKSSD-MKDLKDIERHYGTKIR 385
>At1g54270.1 68414.m06187 eukaryotic translation initiation factor
4A-2 / eIF-4A-2 similar to eukaryotic translation
initiation factor 4A GI:19696 from [Nicotiana
plumbaginifolia]
Length = 412
Score = 250 bits (611), Expect = 2e-66
Identities = 137/355 (38%), Positives = 212/355 (59%), Gaps = 14/355 (3%)
Query: 78 KTFEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMIAQSQSGTGKTAAFVLA 137
++F+A+ L+ NLL+G+YA GF PS IQ+ + ++I Q+QSGTGKTA F
Sbjct: 39 ESFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKG--LDVIQQAQSGTGKTATFCSG 96
Query: 138 MLSRVDSNKNYPQVLCLSPTYELAIQTGEVAAKMAKFCPEIKLKYAVRGEELPRGSKITD 197
+L ++D Q L L+PT ELA Q +V + + +K+ V G + +I
Sbjct: 97 VLQQLDYALLQCQALVLAPTRELAQQIEKVMRALGDY-QGVKVHACVGGTSVREDQRILQ 155
Query: 198 ---HILIGTPGKMFDWGVKFGMFDMGKIKVFVLDEADVMINRQGHQDQCIRIHKCLPSTC 254
H+++GTPG++FD ++ IK+FVLDEAD M++R G +DQ I + LP
Sbjct: 156 AGVHVVVGTPGRVFDM-LRRQSLRPDCIKMFVLDEADEMLSR-GFKDQIYDIFQLLPPKI 213
Query: 255 QMMFFSATYGTAVMQFAEIIVSNPIIIRLLREEESLDNIKQYYVKCKSAEDKYRAICNIY 314
Q+ FSAT ++ +S P+ I + R+E +L+ IKQ+YV + + K +C++Y
Sbjct: 214 QVGVFSATMPPEALEITRKFMSKPVRILVKRDELTLEGIKQFYVNVEKEDWKLETLCDLY 273
Query: 315 GVITIGQAIIFCHTRKTASWLSEKMSKDGHSVAVLSGELTVEQRIAVLDRFRVGLEKVLI 374
+ I Q++IF +TR+ WL++KM H+V+ G++ R ++ FR G +VLI
Sbjct: 274 ETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLI 333
Query: 375 TTNVLSRGIDVEQVTLVVNFDMPMDMNRKADCETYLHRIGRTGRFGKAGIAINLI 429
TT++L+RGIDV+QV+LV+NFD+P E YLHRIGR+GRFG+ G+AIN +
Sbjct: 334 TTDLLARGIDVQQVSLVINFDLP------TQPENYLHRIGRSGRFGRKGVAINFV 382
>At4g00660.2 68417.m00091 DEAD/DEAH box helicase, putative similar
to ATP-dependent RNA helicases
Length = 505
Score = 214 bits (522), Expect = 1e-55
Identities = 125/374 (33%), Positives = 213/374 (56%), Gaps = 17/374 (4%)
Query: 80 FEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMIAQSQSGTGKTAAFVLAML 139
FE LK LL G+Y GF PS IQE ++P L ++++A++++GTGKTAAF + +L
Sbjct: 133 FEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTG--RDILARAKNGTGKTAAFCIPVL 190
Query: 140 SRVDSNKNYPQVLCLSPTYELAIQTGEVAAKMAKFCPEIKLKYAVRGEELPRG-SKITD- 197
++D + N Q + + PT ELA+QT +V ++ K +I++ G L ++
Sbjct: 191 EKIDQDNNVIQAVIIVPTRELALQTSQVCKELGKHL-KIQVMVTTGGTSLKDDIMRLYQP 249
Query: 198 -HILIGTPGKMFDWGVKFGMFDMGKIKVFVLDEADVMINRQGHQDQCIRIHKCLPSTCQM 256
H+L+GTPG++ D K G+ + V V+DEAD +++++ Q + LP + Q+
Sbjct: 250 VHLLVGTPGRILDL-TKKGVCVLKDCSVLVMDEADKLLSQE-FQPSVEHLISFLPESRQI 307
Query: 257 MFFSATYGTAVMQFAEIIVSNPIIIRLLREEESLDNIKQYYVKCKSAEDKYRAICNIYGV 316
+ FSAT+ V F + ++NP +I L+ +E +L I Q+Y + + K + ++
Sbjct: 308 LMFSATFPVTVKDFKDRFLTNPYVINLM-DELTLKGITQFYAFVEERQ-KIHCLNTLFSK 365
Query: 317 ITIGQAIIFCHTRKTASWLSEKMSKDGHSVAVLSGELTVEQRIAVLDRFRVGLEKVLITT 376
+ I Q+IIFC++ L++K+++ G+S + ++ + R V FR G + L+ T
Sbjct: 366 LQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCT 425
Query: 377 NVLSRGIDVEQVTLVVNFDMPMDMNRKADCETYLHRIGRTGRFGKAGIAINLIDSPQAME 436
++ +RGID++ V +V+NFD P + ETYLHR+GR+GRFG G+A+NLI
Sbjct: 426 DLFTRGIDIQAVNVVINFDFP------KNAETYLHRVGRSGRFGHLGLAVNLITYEDRFN 479
Query: 437 ICTDIEAHFGKKIQ 450
+ IE G +I+
Sbjct: 480 LYR-IEQELGTEIK 492
>At4g00660.1 68417.m00090 DEAD/DEAH box helicase, putative similar
to ATP-dependent RNA helicases
Length = 505
Score = 214 bits (522), Expect = 1e-55
Identities = 125/374 (33%), Positives = 213/374 (56%), Gaps = 17/374 (4%)
Query: 80 FEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMIAQSQSGTGKTAAFVLAML 139
FE LK LL G+Y GF PS IQE ++P L ++++A++++GTGKTAAF + +L
Sbjct: 133 FEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTG--RDILARAKNGTGKTAAFCIPVL 190
Query: 140 SRVDSNKNYPQVLCLSPTYELAIQTGEVAAKMAKFCPEIKLKYAVRGEELPRG-SKITD- 197
++D + N Q + + PT ELA+QT +V ++ K +I++ G L ++
Sbjct: 191 EKIDQDNNVIQAVIIVPTRELALQTSQVCKELGKHL-KIQVMVTTGGTSLKDDIMRLYQP 249
Query: 198 -HILIGTPGKMFDWGVKFGMFDMGKIKVFVLDEADVMINRQGHQDQCIRIHKCLPSTCQM 256
H+L+GTPG++ D K G+ + V V+DEAD +++++ Q + LP + Q+
Sbjct: 250 VHLLVGTPGRILDL-TKKGVCVLKDCSVLVMDEADKLLSQE-FQPSVEHLISFLPESRQI 307
Query: 257 MFFSATYGTAVMQFAEIIVSNPIIIRLLREEESLDNIKQYYVKCKSAEDKYRAICNIYGV 316
+ FSAT+ V F + ++NP +I L+ +E +L I Q+Y + + K + ++
Sbjct: 308 LMFSATFPVTVKDFKDRFLTNPYVINLM-DELTLKGITQFYAFVEERQ-KIHCLNTLFSK 365
Query: 317 ITIGQAIIFCHTRKTASWLSEKMSKDGHSVAVLSGELTVEQRIAVLDRFRVGLEKVLITT 376
+ I Q+IIFC++ L++K+++ G+S + ++ + R V FR G + L+ T
Sbjct: 366 LQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCT 425
Query: 377 NVLSRGIDVEQVTLVVNFDMPMDMNRKADCETYLHRIGRTGRFGKAGIAINLIDSPQAME 436
++ +RGID++ V +V+NFD P + ETYLHR+GR+GRFG G+A+NLI
Sbjct: 426 DLFTRGIDIQAVNVVINFDFP------KNAETYLHRVGRSGRFGHLGLAVNLITYEDRFN 479
Query: 437 ICTDIEAHFGKKIQ 450
+ IE G +I+
Sbjct: 480 LYR-IEQELGTEIK 492
>At3g61240.2 68416.m06854 DEAD/DEAH box helicase, putative (RH12)
identical to cDNA DEAD box RNA helicase, RH12 GI:3776000
Length = 498
Score = 207 bits (506), Expect = 1e-53
Identities = 118/353 (33%), Positives = 200/353 (56%), Gaps = 16/353 (4%)
Query: 80 FEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMIAQSQSGTGKTAAFVLAML 139
FE LK +LLKG+Y GF PS IQE ++P L +++A++++GTGKT AF + +L
Sbjct: 126 FEDYFLKRDLLKGIYEKGFEKPSPIQEESIPIALTG--SDILARAKNGTGKTGAFCIPVL 183
Query: 140 SRVDSNKNYPQVLCLSPTYELAIQTGEVAAKMAKFCPEIKLKYAVRGEELPRGSKITD-- 197
++D N N Q + L PT ELA+QT +V +++K+ I++ G L
Sbjct: 184 EKIDPNNNVIQAMILVPTRELALQTSQVCKELSKYL-NIQVMVTTGGTSLRDDIMRLHQP 242
Query: 198 -HILIGTPGKMFDWGVKFGMFDMGKIKVFVLDEADVMINRQGHQDQCIRIHKCLPSTCQM 256
H+L+GTPG++ D K G+ + + V+DEAD +++ + Q + + LP Q
Sbjct: 243 VHLLVGTPGRILDL-TKKGVCVLKDCAMLVMDEADKLLSAE-FQPSLEELIQFLPQNRQF 300
Query: 257 MFFSATYGTAVMQFAEIIVSNPIIIRLLREEESLDNIKQYYVKCKSAEDKYRAICNIYGV 316
+ FSAT+ V F + + P +I L+ ++ +L + QYY + + K + ++
Sbjct: 301 LMFSATFPVTVKAFKDRHLRKPYVINLM-DQLTLMGVTQYYAFVEERQ-KVHCLNTLFSK 358
Query: 317 ITIGQAIIFCHTRKTASWLSEKMSKDGHSVAVLSGELTVEQRIAVLDRFRVGLEKVLITT 376
+ I Q+IIFC++ L++K+++ G+S + ++ + R V FR G + L+ T
Sbjct: 359 LQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMVQDHRNRVFHEFRNGACRNLVCT 418
Query: 377 NVLSRGIDVEQVTLVVNFDMPMDMNRKADCETYLHRIGRTGRFGKAGIAINLI 429
++ +RGID++ V +V+NFD P E+YLHR+GR+GRFG G+A+NL+
Sbjct: 419 DLFTRGIDIQAVNVVINFDFP------RTSESYLHRVGRSGRFGHLGLAVNLV 465
>At3g61240.1 68416.m06853 DEAD/DEAH box helicase, putative (RH12)
identical to cDNA DEAD box RNA helicase, RH12 GI:3776000
Length = 498
Score = 207 bits (506), Expect = 1e-53
Identities = 118/353 (33%), Positives = 200/353 (56%), Gaps = 16/353 (4%)
Query: 80 FEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMIAQSQSGTGKTAAFVLAML 139
FE LK +LLKG+Y GF PS IQE ++P L +++A++++GTGKT AF + +L
Sbjct: 126 FEDYFLKRDLLKGIYEKGFEKPSPIQEESIPIALTG--SDILARAKNGTGKTGAFCIPVL 183
Query: 140 SRVDSNKNYPQVLCLSPTYELAIQTGEVAAKMAKFCPEIKLKYAVRGEELPRGSKITD-- 197
++D N N Q + L PT ELA+QT +V +++K+ I++ G L
Sbjct: 184 EKIDPNNNVIQAMILVPTRELALQTSQVCKELSKYL-NIQVMVTTGGTSLRDDIMRLHQP 242
Query: 198 -HILIGTPGKMFDWGVKFGMFDMGKIKVFVLDEADVMINRQGHQDQCIRIHKCLPSTCQM 256
H+L+GTPG++ D K G+ + + V+DEAD +++ + Q + + LP Q
Sbjct: 243 VHLLVGTPGRILDL-TKKGVCVLKDCAMLVMDEADKLLSAE-FQPSLEELIQFLPQNRQF 300
Query: 257 MFFSATYGTAVMQFAEIIVSNPIIIRLLREEESLDNIKQYYVKCKSAEDKYRAICNIYGV 316
+ FSAT+ V F + + P +I L+ ++ +L + QYY + + K + ++
Sbjct: 301 LMFSATFPVTVKAFKDRHLRKPYVINLM-DQLTLMGVTQYYAFVEERQ-KVHCLNTLFSK 358
Query: 317 ITIGQAIIFCHTRKTASWLSEKMSKDGHSVAVLSGELTVEQRIAVLDRFRVGLEKVLITT 376
+ I Q+IIFC++ L++K+++ G+S + ++ + R V FR G + L+ T
Sbjct: 359 LQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMVQDHRNRVFHEFRNGACRNLVCT 418
Query: 377 NVLSRGIDVEQVTLVVNFDMPMDMNRKADCETYLHRIGRTGRFGKAGIAINLI 429
++ +RGID++ V +V+NFD P E+YLHR+GR+GRFG G+A+NL+
Sbjct: 419 DLFTRGIDIQAVNVVINFDFP------RTSESYLHRVGRSGRFGHLGLAVNLV 465
>At2g45810.1 68415.m05697 DEAD/DEAH box helicase, putative
Length = 528
Score = 204 bits (499), Expect = 7e-53
Identities = 117/353 (33%), Positives = 203/353 (57%), Gaps = 16/353 (4%)
Query: 80 FEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMIAQSQSGTGKTAAFVLAML 139
FE LK +LL+G+Y GF PS IQE ++P L +++A++++GTGKT AF + L
Sbjct: 156 FEDYFLKRDLLRGIYEKGFEKPSPIQEESIPIALTG--SDILARAKNGTGKTGAFCIPTL 213
Query: 140 SRVDSNKNYPQVLCLSPTYELAIQTGEVAAKMAKFCPEIKLKYAVRGEELPRG-SKITD- 197
++D N Q + L PT ELA+QT +V +++K+ +I++ G L ++
Sbjct: 214 EKIDPENNVIQAVILVPTRELALQTSQVCKELSKYL-KIEVMVTTGGTSLRDDIMRLYQP 272
Query: 198 -HILIGTPGKMFDWGVKFGMFDMGKIKVFVLDEADVMINRQGHQDQCIRIHKCLPSTCQM 256
H+L+GTPG++ D K G+ + + V+DEAD +++ + Q + + LP + Q+
Sbjct: 273 VHLLVGTPGRILDLAKK-GVCVLKDCAMLVMDEADKLLSVE-FQPSIEELIQFLPESRQI 330
Query: 257 MFFSATYGTAVMQFAEIIVSNPIIIRLLREEESLDNIKQYYVKCKSAEDKYRAICNIYGV 316
+ FSAT+ V F + + P II L+ ++ +L + QYY + + K + ++
Sbjct: 331 LMFSATFPVTVKSFKDRYLKKPYIINLM-DQLTLMGVTQYYAFVEERQ-KVHCLNTLFSK 388
Query: 317 ITIGQAIIFCHTRKTASWLSEKMSKDGHSVAVLSGELTVEQRIAVLDRFRVGLEKVLITT 376
+ I Q+IIFC++ L++K+++ G+S + ++ + R V FR G + L+ T
Sbjct: 389 LQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMVQDHRNRVFHDFRNGACRNLVCT 448
Query: 377 NVLSRGIDVEQVTLVVNFDMPMDMNRKADCETYLHRIGRTGRFGKAGIAINLI 429
++ +RGID++ V +V+NFD P E+YLHR+GR+GRFG G+A+NL+
Sbjct: 449 DLFTRGIDIQAVNVVINFDFP------RTSESYLHRVGRSGRFGHLGLAVNLV 495
>At5g11200.1 68418.m01309 DEAD/DEAH box helicase, putative
Length = 427
Score = 175 bits (426), Expect = 5e-44
Identities = 109/379 (28%), Positives = 193/379 (50%), Gaps = 17/379 (4%)
Query: 80 FEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMIAQSQSGTGKTAAFVLAML 139
F LKP LL+ + GF PS++Q +P + ++I Q++SG GKTA FVL+ L
Sbjct: 48 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILG--MDVICQAKSGMGKTAVFVLSTL 105
Query: 140 SRVDSNKNYPQVLCLSPTYELAIQTGEVAAKMAKFCPEIKLKYAVRGEELPRGSKITD-- 197
+++ + L L T ELA Q + + + P+ K+ G + +
Sbjct: 106 QQIEPSPGQVSALVLCHTRELAYQICNEFVRFSTYLPDTKVSVFYGGVNIKIHKDLLKNE 165
Query: 198 --HILIGTPGKMFDWGVKFGMFDMGKIKVFVLDEADVMINRQGHQDQCIRIHKCLPSTCQ 255
HI++GTPG++ + + + ++ F+LDE D M+ + I K P Q
Sbjct: 166 CPHIVVGTPGRVLALAREKDL-SLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQ 224
Query: 256 MMFFSATYGTAVMQFAEIIVSNPIIIRLLREEE-SLDNIKQYYVKCKSAEDKYRAICNIY 314
+M FSAT + + + +P+ I + E + +L + Q+Y+K E K R + ++
Sbjct: 225 VMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSEME-KNRKLNDLL 283
Query: 315 GVITIGQAIIFCHTRKTASWLSEKMSKDGH-SVAVLSGELTVEQRIAVLDRFRVGLEKVL 373
+ Q +IF + A+ L++ + + S+ + SG ++ E+R+ F+ G +++L
Sbjct: 284 DALDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSG-MSQEERLTRYKSFKEGHKRIL 342
Query: 374 ITTNVLSRGIDVEQVTLVVNFDMPMDMNRKADCETYLHRIGRTGRFGKAGIAINLIDSPQ 433
+ T+++ RGID+E+V +V+N+DMP +TYLHR+GR GRFG G+AI + S
Sbjct: 343 VATDLVGRGIDIERVNIVINYDMP------DSADTYLHRVGRAGRFGTKGLAITFVASAS 396
Query: 434 AMEICTDIEAHFGKKIQLL 452
E+ ++ F I+ L
Sbjct: 397 DSEVLNQVQERFEVDIKEL 415
>At5g11170.1 68418.m01305 DEAD/DEAH box helicase, putative (RH15)
DEAD BOX RNA helicase RH15, Arabidopsis thaliana,
EMBL:ATH010466
Length = 427
Score = 175 bits (426), Expect = 5e-44
Identities = 109/379 (28%), Positives = 193/379 (50%), Gaps = 17/379 (4%)
Query: 80 FEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMIAQSQSGTGKTAAFVLAML 139
F LKP LL+ + GF PS++Q +P + ++I Q++SG GKTA FVL+ L
Sbjct: 48 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILG--MDVICQAKSGMGKTAVFVLSTL 105
Query: 140 SRVDSNKNYPQVLCLSPTYELAIQTGEVAAKMAKFCPEIKLKYAVRGEELPRGSKITD-- 197
+++ + L L T ELA Q + + + P+ K+ G + +
Sbjct: 106 QQIEPSPGQVSALVLCHTRELAYQICNEFVRFSTYLPDTKVSVFYGGVNIKIHKDLLKNE 165
Query: 198 --HILIGTPGKMFDWGVKFGMFDMGKIKVFVLDEADVMINRQGHQDQCIRIHKCLPSTCQ 255
HI++GTPG++ + + + ++ F+LDE D M+ + I K P Q
Sbjct: 166 CPHIVVGTPGRVLALAREKDL-SLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQ 224
Query: 256 MMFFSATYGTAVMQFAEIIVSNPIIIRLLREEE-SLDNIKQYYVKCKSAEDKYRAICNIY 314
+M FSAT + + + +P+ I + E + +L + Q+Y+K E K R + ++
Sbjct: 225 VMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSEME-KTRKLNDLL 283
Query: 315 GVITIGQAIIFCHTRKTASWLSEKMSKDGH-SVAVLSGELTVEQRIAVLDRFRVGLEKVL 373
+ Q +IF + A+ L++ + + S+ + SG ++ E+R+ F+ G +++L
Sbjct: 284 DALDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSG-MSQEERLTRYKSFKEGHKRIL 342
Query: 374 ITTNVLSRGIDVEQVTLVVNFDMPMDMNRKADCETYLHRIGRTGRFGKAGIAINLIDSPQ 433
+ T+++ RGID+E+V +V+N+DMP +TYLHR+GR GRFG G+AI + S
Sbjct: 343 VATDLVGRGIDIERVNIVINYDMP------DSADTYLHRVGRAGRFGTKGLAITFVASAS 396
Query: 434 AMEICTDIEAHFGKKIQLL 452
E+ ++ F I+ L
Sbjct: 397 DSEVLNQVQERFEVDIKEL 415
>At5g60990.1 68418.m07651 DEAD/DEAH box helicase, putative (RH10)
probable replication protein A1, Oryza sativa,
EMBL:AF009179
Length = 456
Score = 159 bits (387), Expect = 3e-39
Identities = 117/399 (29%), Positives = 202/399 (50%), Gaps = 31/399 (7%)
Query: 77 VKTFEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMIAQSQSGTGKTAAFVL 136
VKTF L ++ L+K +G+ PSKIQ ALP L +++I +Q+G+GKT AF +
Sbjct: 8 VKTFAELGVREELVKACERLGWKNPSKIQAEALPFALEG--KDVIGLAQTGSGKTGAFAI 65
Query: 137 AMLSRV-----DSNKNYPQ-------VLCLSPTYELAIQTGEVAAKMAKFCPEIKLKYAV 184
+L + DS + LSPT ELAIQ +A + +I L+ AV
Sbjct: 66 PILQALLEYVYDSEPKKGRRPDPAFFACVLSPTRELAIQ---IAEQFEALGADISLRCAV 122
Query: 185 RGEELPRGSKIT-----DHILIGTPGKMFDWGVKFGMFDMGKIKVFVLDEADVMINRQGH 239
+ R + H+++ TPG+++D F + +K VLDEAD ++N +
Sbjct: 123 LVGGIDRMQQTIALGKRPHVIVATPGRLWDHMSDTKGFSLKSLKYLVLDEADRLLN-EDF 181
Query: 240 QDQCIRIHKCLPSTCQMMFFSATYGTAVMQFAEIIVSNPIIIRLLREEESLDNIKQYYVK 299
+ +I + +P + FSAT V + + NP+ I + ++D +KQ Y +
Sbjct: 182 EKSLNQILEEIPLERKTFLFSATMTKKVRKLQRACLRNPVKIEAASKYSTVDTLKQQY-R 240
Query: 300 CKSAEDKYRAICNIYGVITIGQAIIFCHTRKTASWLSEKMSKDGHSVAVLSGELTVEQRI 359
+A+ K + I + ++IF T +L+ + G +SG++T +R+
Sbjct: 241 FVAAKYKDCYLVYILSEMPESTSMIFTRTCDGTRFLALVLRSLGFRAIPISGQMTQSKRL 300
Query: 360 AVLDRFRVGLEKVLITTNVLSRGIDVEQVTLVVNFDMPMDMNRKADCETYLHRIGRTGRF 419
L++F+ G +L+ T+V SRG+D+ V +V+N+D+P + + Y+HR+GRT R
Sbjct: 301 GALNKFKAGECNILVCTDVASRGLDIPSVDVVINYDIP------TNSKDYIHRVGRTARA 354
Query: 420 GKAGIAINLIDSPQAMEICTDIEAHFGKKIQLLDIEDAE 458
G++G+ I+L++ + +E IE GKK+ E+ E
Sbjct: 355 GRSGVGISLVNQYE-LEWYIQIEKLIGKKLPEYPAEEDE 392
>At3g06480.1 68416.m00750 DEAD box RNA helicase, putative similar to
RNA helicase DRH1 [Arabidopsis thaliana] GI:3149952;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain, PF00397:
WW domain
Length = 1088
Score = 158 bits (384), Expect = 6e-39
Identities = 118/358 (32%), Positives = 194/358 (54%), Gaps = 25/358 (6%)
Query: 79 TFEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMIAQSQSGTGKTA-----A 133
TFE+ L P +L+ + + GF +P+ IQ P L ++++A +++G+GKT A
Sbjct: 436 TFESSGLPPEILRELLSAGFPSPTPIQAQTWPIALQS--RDIVAIAKTGSGKTLGYLIPA 493
Query: 134 FVLAMLSRVDSNKNYPQVLCLSPTYELAIQTGEVAAKMAKFCP-EIKLKY--AVRGEELP 190
F+L R DS +N P VL L+PT ELA Q + A + + Y A +G +L
Sbjct: 494 FILLRHCRNDS-RNGPTVLILAPTRELATQIQDEALRFGRSSRISCTCLYGGAPKGPQLK 552
Query: 191 RGSKITDHILIGTPGKMFDWGVKFGMFDMGKIKVFVLDEADVMINRQGHQDQCIRIHKCL 250
+ D I++ TPG++ D ++ M D ++ + VLDEAD M++ G + Q +I +
Sbjct: 553 ELERGAD-IVVATPGRLNDI-LEMKMIDFQQVSLLVLDEADRMLD-MGFEPQIRKIVNEI 609
Query: 251 PSTCQMMFFSATYGTAVMQFAEIIVSNPIIIRLLREEESLDN--IKQYYVKCKSAEDKYR 308
P Q + ++AT+ V + A ++ NP+ + + R +E N I QY V+ +K R
Sbjct: 610 PPRRQTLMYTATWPKEVRKIASDLLVNPVQVNIGRVDELAANKAITQY-VEVVPQMEKER 668
Query: 309 AICNIYGVITIG-QAIIFCHTRKTASWLSEKMSKDGHSVAVLSGELTVEQRIAVLDRFRV 367
+ I G + IIFC T++ L+ + + +V V+ G+ T +R VL++FR
Sbjct: 669 RLEQILRSQERGSKVIIFCSTKRLCDHLARSVGRHFGAV-VIHGDKTQGERDWVLNQFRS 727
Query: 368 GLEKVLITTNVLSRGIDVEQVTLVVNFDMPMDMNRKADCETYLHRIGRTGRFGKAGIA 425
G VLI T+V +RG+D++ + +V+N+D P + E Y+HRIGRTGR G G+A
Sbjct: 728 GKSCVLIATDVAARGLDIKDIRVVINYDFPTGV------EDYVHRIGRTGRAGATGVA 779
>At2g33730.1 68415.m04134 DEAD box RNA helicase, putative similar to
SP|P23394 Pre-mRNA splicing factor RNA helicase PRP28
{Saccharomyces cerevisiae}; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain
Length = 733
Score = 156 bits (379), Expect = 3e-38
Identities = 124/396 (31%), Positives = 197/396 (49%), Gaps = 41/396 (10%)
Query: 62 DIEIQRKDPNSPLYSVKTFEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMI 121
D I K P ++++E L LLK V G+ PS IQ A+P L +++I
Sbjct: 298 DFNISYKGSRIPR-PMRSWEESKLTSELLKAVERAGYKKPSPIQMAAIPLGLQQ--RDVI 354
Query: 122 AQSQSGTGKTAAFVLAMLSRVD-----SNKNY---PQVLCLSPTYELAIQTGEVAAKMAK 173
+++G+GKTAAFVL ML+ + S +N P + ++PT ELA Q E K A
Sbjct: 355 GIAETGSGKTAAFVLPMLAYISRLPPMSEENETEGPYAVVMAPTRELAQQIEEETVKFAH 414
Query: 174 FCPEIKLKYAVRGEELP-RGSKITD--HILIGTPGKMFDWGVKFGMFDMGKIKVFVLDEA 230
+ ++ V G+ + +G KIT I+I TPG++ D ++ + + VLDEA
Sbjct: 415 YLG-FRVTSIVGGQSIEEQGLKITQGCEIVIATPGRLIDC-LERRYAVLNQCNYVVLDEA 472
Query: 231 DVMINRQGHQDQCIRIHKCLPSTC-----------------QMMFFSATYGTAVMQFAEI 273
D MI+ G + Q + +PS+ FSAT V + A
Sbjct: 473 DRMID-MGFEPQVAGVLDAMPSSNLKPENEEEELDEKKIYRTTYMFSATMPPGVERLARK 531
Query: 274 IVSNPIIIRLLREEESLDNIKQYYVKCKSAEDKYRAICNIYGVITIGQAIIFCHTRKTAS 333
+ NP+++ + ++ D I Q+ + K +E +R + + + AI+F +T+K
Sbjct: 532 YLRNPVVVTIGTAGKTTDLISQHVIMMKESEKFFR-LQKLLDELGEKTAIVFVNTKKNCD 590
Query: 334 WLSEKMSKDGHSVAVLSGELTVEQRIAVLDRFRVGLEKVLITTNVLSRGIDVEQVTLVVN 393
+++ + K G+ V L G + EQR L+ FR VL+ T+V+ RGID+ V V+N
Sbjct: 591 SIAKNLDKAGYRVTTLHGGKSQEQREISLEGFRAKRYNVLVATDVVGRGIDIPDVAHVIN 650
Query: 394 FDMPMDMNRKADCETYLHRIGRTGRFGKAGIAINLI 429
+DMP + E Y HRIGRTGR GK+G+A + +
Sbjct: 651 YDMPKHI------EMYTHRIGRTGRAGKSGVATSFL 680
>At5g11170.2 68418.m01306 DEAD/DEAH box helicase, putative (RH15)
DEAD BOX RNA helicase RH15, Arabidopsis thaliana,
EMBL:ATH010466
Length = 344
Score = 155 bits (377), Expect = 4e-38
Identities = 97/340 (28%), Positives = 175/340 (51%), Gaps = 15/340 (4%)
Query: 119 NMIAQSQSGTGKTAAFVLAMLSRVDSNKNYPQVLCLSPTYELAIQTGEVAAKMAKFCPEI 178
++I Q++SG GKTA FVL+ L +++ + L L T ELA Q + + + P+
Sbjct: 2 DVICQAKSGMGKTAVFVLSTLQQIEPSPGQVSALVLCHTRELAYQICNEFVRFSTYLPDT 61
Query: 179 KLKYAVRGEELPRGSKITD----HILIGTPGKMFDWGVKFGMFDMGKIKVFVLDEADVMI 234
K+ G + + HI++GTPG++ + + + ++ F+LDE D M+
Sbjct: 62 KVSVFYGGVNIKIHKDLLKNECPHIVVGTPGRVLALAREKDL-SLKNVRHFILDECDKML 120
Query: 235 NRQGHQDQCIRIHKCLPSTCQMMFFSATYGTAVMQFAEIIVSNPIIIRLLREEE-SLDNI 293
+ I K P Q+M FSAT + + + +P+ I + E + +L +
Sbjct: 121 ESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGL 180
Query: 294 KQYYVKCKSAEDKYRAICNIYGVITIGQAIIFCHTRKTASWLSEKMSKDGH-SVAVLSGE 352
Q+Y+K E K R + ++ + Q +IF + A+ L++ + + S+ + SG
Sbjct: 181 VQHYIKLSEME-KTRKLNDLLDALDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSG- 238
Query: 353 LTVEQRIAVLDRFRVGLEKVLITTNVLSRGIDVEQVTLVVNFDMPMDMNRKADCETYLHR 412
++ E+R+ F+ G +++L+ T+++ RGID+E+V +V+N+DMP +TYLHR
Sbjct: 239 MSQEERLTRYKSFKEGHKRILVATDLVGRGIDIERVNIVINYDMP------DSADTYLHR 292
Query: 413 IGRTGRFGKAGIAINLIDSPQAMEICTDIEAHFGKKIQLL 452
+GR GRFG G+AI + S E+ ++ F I+ L
Sbjct: 293 VGRAGRFGTKGLAITFVASASDSEVLNQVQERFEVDIKEL 332
>At3g01540.3 68416.m00084 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 619
Score = 154 bits (373), Expect = 1e-37
Identities = 115/378 (30%), Positives = 197/378 (52%), Gaps = 28/378 (7%)
Query: 79 TFEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMIAQSQSGTGKTAAFVLA- 137
+FEA P LL+ V + GF+AP+ IQ + P +A ++++A +++G+GKT +++
Sbjct: 159 SFEATGFPPELLREVLSAGFSAPTPIQAQSWP--IAMQGRDIVAIAKTGSGKTLGYLIPG 216
Query: 138 --MLSRVDSNKNY-PQVLCLSPTYELAIQTGEVAAKMAKFCPEIKLKYAVRGEELPRGSK 194
L R+ ++ P +L LSPT ELA Q E A K + I G P+G +
Sbjct: 217 FLHLQRIRNDSRMGPTILVLSPTRELATQIQEEAVKFGR-SSRISCTCLYGGA--PKGPQ 273
Query: 195 ITD-----HILIGTPGKMFDWGVKFGMFDMGKIKVFVLDEADVMINRQGHQDQCIRIHKC 249
+ D I++ TPG++ D ++ + +I VLDEAD M++ G + Q +I K
Sbjct: 274 LRDLERGADIVVATPGRLNDI-LEMRRISLRQISYLVLDEADRMLD-MGFEPQIRKIVKE 331
Query: 250 LPSTCQMMFFSATYGTAVMQFAEIIVSNPIIIRLLREEESLDNIK-QYYVKCKSAEDKYR 308
+P+ Q + ++AT+ V + A ++ NP + + +E + N +++ + +K R
Sbjct: 332 IPTKRQTLMYTATWPKGVRKIAADLLVNPAQVNIGNVDELVANKSITQHIEVVAPMEKQR 391
Query: 309 AICNIYGVITIG-QAIIFCHTRKTASWLSEKMSKDGHSVAVLSGELTVEQRIAVLDRFRV 367
+ I G + IIFC T++ L+ +++ A + G+ + +R VL++FR
Sbjct: 392 RLEQILRSQEPGSKVIIFCSTKRMCDQLTRNLTRQ-FGAAAIHGDKSQPERDNVLNQFRS 450
Query: 368 GLEKVLITTNVLSRGIDVEQVTLVVNFDMPMDMNRKADCETYLHRIGRTGRFGKAGIAIN 427
G VL+ T+V +RG+DV+ + VVN+D P + E Y+HRIGRTGR G G A
Sbjct: 451 GRTPVLVATDVAARGLDVKDIRAVVNYDFPNGV------EDYVHRIGRTGRAGATGQAFT 504
Query: 428 LI---DSPQAMEICTDIE 442
DS A ++ +E
Sbjct: 505 FFGDQDSKHASDLIKILE 522
>At3g01540.2 68416.m00083 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 619
Score = 154 bits (373), Expect = 1e-37
Identities = 115/378 (30%), Positives = 197/378 (52%), Gaps = 28/378 (7%)
Query: 79 TFEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMIAQSQSGTGKTAAFVLA- 137
+FEA P LL+ V + GF+AP+ IQ + P +A ++++A +++G+GKT +++
Sbjct: 159 SFEATGFPPELLREVLSAGFSAPTPIQAQSWP--IAMQGRDIVAIAKTGSGKTLGYLIPG 216
Query: 138 --MLSRVDSNKNY-PQVLCLSPTYELAIQTGEVAAKMAKFCPEIKLKYAVRGEELPRGSK 194
L R+ ++ P +L LSPT ELA Q E A K + I G P+G +
Sbjct: 217 FLHLQRIRNDSRMGPTILVLSPTRELATQIQEEAVKFGR-SSRISCTCLYGGA--PKGPQ 273
Query: 195 ITD-----HILIGTPGKMFDWGVKFGMFDMGKIKVFVLDEADVMINRQGHQDQCIRIHKC 249
+ D I++ TPG++ D ++ + +I VLDEAD M++ G + Q +I K
Sbjct: 274 LRDLERGADIVVATPGRLNDI-LEMRRISLRQISYLVLDEADRMLD-MGFEPQIRKIVKE 331
Query: 250 LPSTCQMMFFSATYGTAVMQFAEIIVSNPIIIRLLREEESLDNIK-QYYVKCKSAEDKYR 308
+P+ Q + ++AT+ V + A ++ NP + + +E + N +++ + +K R
Sbjct: 332 IPTKRQTLMYTATWPKGVRKIAADLLVNPAQVNIGNVDELVANKSITQHIEVVAPMEKQR 391
Query: 309 AICNIYGVITIG-QAIIFCHTRKTASWLSEKMSKDGHSVAVLSGELTVEQRIAVLDRFRV 367
+ I G + IIFC T++ L+ +++ A + G+ + +R VL++FR
Sbjct: 392 RLEQILRSQEPGSKVIIFCSTKRMCDQLTRNLTRQ-FGAAAIHGDKSQPERDNVLNQFRS 450
Query: 368 GLEKVLITTNVLSRGIDVEQVTLVVNFDMPMDMNRKADCETYLHRIGRTGRFGKAGIAIN 427
G VL+ T+V +RG+DV+ + VVN+D P + E Y+HRIGRTGR G G A
Sbjct: 451 GRTPVLVATDVAARGLDVKDIRAVVNYDFPNGV------EDYVHRIGRTGRAGATGQAFT 504
Query: 428 LI---DSPQAMEICTDIE 442
DS A ++ +E
Sbjct: 505 FFGDQDSKHASDLIKILE 522
>At3g01540.1 68416.m00082 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 618
Score = 154 bits (373), Expect = 1e-37
Identities = 115/378 (30%), Positives = 197/378 (52%), Gaps = 28/378 (7%)
Query: 79 TFEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMIAQSQSGTGKTAAFVLA- 137
+FEA P LL+ V + GF+AP+ IQ + P +A ++++A +++G+GKT +++
Sbjct: 159 SFEATGFPPELLREVLSAGFSAPTPIQAQSWP--IAMQGRDIVAIAKTGSGKTLGYLIPG 216
Query: 138 --MLSRVDSNKNY-PQVLCLSPTYELAIQTGEVAAKMAKFCPEIKLKYAVRGEELPRGSK 194
L R+ ++ P +L LSPT ELA Q E A K + I G P+G +
Sbjct: 217 FLHLQRIRNDSRMGPTILVLSPTRELATQIQEEAVKFGR-SSRISCTCLYGGA--PKGPQ 273
Query: 195 ITD-----HILIGTPGKMFDWGVKFGMFDMGKIKVFVLDEADVMINRQGHQDQCIRIHKC 249
+ D I++ TPG++ D ++ + +I VLDEAD M++ G + Q +I K
Sbjct: 274 LRDLERGADIVVATPGRLNDI-LEMRRISLRQISYLVLDEADRMLD-MGFEPQIRKIVKE 331
Query: 250 LPSTCQMMFFSATYGTAVMQFAEIIVSNPIIIRLLREEESLDNIK-QYYVKCKSAEDKYR 308
+P+ Q + ++AT+ V + A ++ NP + + +E + N +++ + +K R
Sbjct: 332 IPTKRQTLMYTATWPKGVRKIAADLLVNPAQVNIGNVDELVANKSITQHIEVVAPMEKQR 391
Query: 309 AICNIYGVITIG-QAIIFCHTRKTASWLSEKMSKDGHSVAVLSGELTVEQRIAVLDRFRV 367
+ I G + IIFC T++ L+ +++ A + G+ + +R VL++FR
Sbjct: 392 RLEQILRSQEPGSKVIIFCSTKRMCDQLTRNLTRQ-FGAAAIHGDKSQPERDNVLNQFRS 450
Query: 368 GLEKVLITTNVLSRGIDVEQVTLVVNFDMPMDMNRKADCETYLHRIGRTGRFGKAGIAIN 427
G VL+ T+V +RG+DV+ + VVN+D P + E Y+HRIGRTGR G G A
Sbjct: 451 GRTPVLVATDVAARGLDVKDIRAVVNYDFPNGV------EDYVHRIGRTGRAGATGQAFT 504
Query: 428 LI---DSPQAMEICTDIE 442
DS A ++ +E
Sbjct: 505 FFGDQDSKHASDLIKILE 522
>At1g77050.1 68414.m08971 DEAD/DEAH box helicase, putative similar
to RNA helicase GI:3776027 from [Arabidopsis thaliana]
Length = 513
Score = 150 bits (364), Expect = 2e-36
Identities = 104/400 (26%), Positives = 203/400 (50%), Gaps = 19/400 (4%)
Query: 64 EIQRKDPNSPLYSVKTFEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMIAQ 123
E+ RK+ FE+L+L PN+ + G+ P+ IQ +P +L+ +++A
Sbjct: 14 ELHRKEKQKKKGKSGGFESLNLGPNVFNAIKKKGYKVPTPIQRKTMPLILSGV--DVVAM 71
Query: 124 SQSGTGKTAAFVLAMLSRVDSN--KNYPQVLCLSPTYELAIQTGEVAAKMAKFCPEIKLK 181
+++G+GKTAAF++ ML ++ + + + L LSPT +LA QT + ++ KF ++++
Sbjct: 72 ARTGSGKTAAFLIPMLEKLKQHVPQGGVRALILSPTRDLAEQTLKFTKELGKFT-DLRVS 130
Query: 182 YAVRGEELP-RGSKITD--HILIGTPGKMFDWGVKFGMFDMGKIKVFVLDEADVMINRQG 238
V G+ + + ++T ++I TPG++ + + ++ V DEAD + G
Sbjct: 131 LLVGGDSMEDQFEELTKGPDVIIATPGRLMHLLSEVDDMTLRTVEYVVFDEADSLFG-MG 189
Query: 239 HQDQCIRIHKCLPSTCQMMFFSATYGTAVMQFAEIIVSNPIIIRLLREEESLDNIKQYYV 298
+Q +I L Q + FSAT +A+ +FA+ + P ++RL E + ++K ++
Sbjct: 190 FAEQLHQILTQLSENRQTLLFSATLPSALAEFAKAGLREPQLVRLDVENKISPDLKLSFL 249
Query: 299 KCKSAEDKYRAICNIYG--VITIGQAIIFCHTRKTASWLSEKMSKDGHSVAVLSGELTVE 356
+ E+KY A+ + + + Q +IF T+ +++ + +V G++ +
Sbjct: 250 TVRP-EEKYSALLYLVREHISSDQQTLIFVSTKHHVEFVNSLFKLENIEPSVCYGDMDQD 308
Query: 357 QRIAVLDRFRVGLEKVLITTNVLSRGIDVEQVTLVVNFDMPMDMNRKADCETYLHRIGRT 416
R + RFR +LI T++ +RGID+ + V+N+D P + ++HR+GR
Sbjct: 309 ARKIHVSRFRARKTMLLIVTDIAARGIDIPLLDNVINWDFP------PRPKIFVHRVGRA 362
Query: 417 GRFGKAGIAINLIDSPQAMEICTDIEAHFGKKIQLLDIED 456
R G+ G A + + +P+ M D+ K ++ ED
Sbjct: 363 ARAGRTGCAYSFV-TPEDMPYMLDLHLFLSKPVRPAPTED 401
>At1g16280.1 68414.m01949 DEAD/DEAH box helicase, putative similar
to gb|L13612 DEAD-box protein (dbp45A) from Drosophila
melanogaster and is a member of PF|00270 DEAD/DEAH box
helicase family
Length = 491
Score = 145 bits (352), Expect = 5e-35
Identities = 116/407 (28%), Positives = 205/407 (50%), Gaps = 25/407 (6%)
Query: 69 DPNSPLYSVKTFEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMIAQSQSGT 128
+P+S S FE L L ++ +G P+ +Q +P +LA ++++ +Q+G+
Sbjct: 49 NPSSDTTSATNFEGLGLAEWAVETCKELGMRKPTPVQTHCVPKILAG--RDVLGLAQTGS 106
Query: 129 GKTAAFVLAMLSRVDSNKNYPQVLCLSPTYELAIQTGEVAAKMAKFCPEIKLKYAVRGEE 188
GKTAAF L +L R+ + L ++PT ELA Q E + C ++ V G +
Sbjct: 107 GKTAAFALPILHRLAEDPYGVFALVVTPTRELAFQLAEQFKALGS-CLNLRCSVIVGGMD 165
Query: 189 -LPRGSKITD--HILIGTPGK---MFDWGVKFGMFDMGKIKVFVLDEADVMINRQGHQDQ 242
L + + HI+I TPG+ + + + K VLDEAD +++ G QD+
Sbjct: 166 MLTQTMSLVSRPHIVITTPGRIKVLLENNPDVPPV-FSRTKFLVLDEADRVLD-VGFQDE 223
Query: 243 CIRIHKCLPSTCQMMFFSATYGTAVMQFAEIIVSNPIIIRLLREEESLDNIKQYYV-KCK 301
I +CLP + Q + FSAT + + E + +++D + Q ++ + K
Sbjct: 224 LRTIFQCLPKSRQTLLFSATMTSNLQALLEHSSNKAYFYEAYEGLKTVDTLTQQFIFEDK 283
Query: 302 SAEDKYRA-ICNIYGVITIGQAIIFCHTRKTASWLSEKMSK-DGHSVAVLSGELTVEQRI 359
A++ Y I + I A+IF T +T LS + + + ++A+ S + R+
Sbjct: 284 DAKELYLVHILSQMEDKGIRSAMIFVSTCRTCQRLSLMLDELEVENIAMHSLN-SQSMRL 342
Query: 360 AVLDRFRVGLEKVLITTNVLSRGIDVEQVTLVVNFDMPMDMNRKADCETYLHRIGRTGRF 419
+ L +F+ G +L+ T+V SRG+D+ V LV+N+D+P D Y+HR+GRT R
Sbjct: 343 SALSKFKSGKVPILLATDVASRGLDIPTVDLVINYDIPRDP------RDYVHRVGRTARA 396
Query: 420 GKAGIAINLIDSPQAMEICTDIEAHFGKKIQLLD---IEDAEEIEKI 463
G+ G+A+++I +++ IE GKK++ + I D+ E+ K+
Sbjct: 397 GRGGLAVSIITETD-VKLIHKIEEEVGKKMEPYNKKVITDSLEVTKV 442
>At1g55150.1 68414.m06298 DEAD box RNA helicase, putative (RH20)
similar to ethylene-responsive RNA helicase GI:5669638
from [Lycopersicon esculentum]; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain
Length = 501
Score = 144 bits (350), Expect = 8e-35
Identities = 112/401 (27%), Positives = 197/401 (49%), Gaps = 29/401 (7%)
Query: 62 DIEIQRKDPNSPLYSVKTFEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMI 121
+I ++ KD P VK+F + +L+ V GF P+ IQ P +A +++I
Sbjct: 86 EITVEGKDIPKP---VKSFRDVGFPDYVLEEVKKAGFTEPTPIQSQGWP--MAMKGRDLI 140
Query: 122 AQSQSGTGKTAAFVLAMLSRVDSNK-----NYPQVLCLSPTYELAIQTGEVAAKMAKFCP 176
+++G+GKT +++L + V++ + P VL L+PT ELA+Q + A+K F
Sbjct: 141 GIAETGSGKTLSYLLPAIVHVNAQPMLAHGDGPIVLVLAPTRELAVQIQQEASK---FGS 197
Query: 177 EIKLKYAVRGEELPRGSKITD-----HILIGTPGKMFDWGVKFGMFDMGKIKVFVLDEAD 231
K+K +P+G ++ D I+I TPG++ D ++ ++ ++ VLDEAD
Sbjct: 198 SSKIKTTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDM-MESNNTNLRRVTYLVLDEAD 256
Query: 232 VMINRQGHQDQCIRIHKCLPSTCQMMFFSATYGTAVMQFAEIIVSNPIIIRLLREEESLD 291
M++ G Q +I + Q +++SAT+ V Q ++ + NP + + + +
Sbjct: 257 RMLD-MGFDPQIRKIVSHIRPDRQTLYWSATWPKEVEQLSKKFLYNPYKVIIGSSDLKAN 315
Query: 292 NIKQYYVKCKSAEDKYRAICNIYGVITIGQAI-IFCHTRKTASWLSEKMSKDGHSVAVLS 350
+ V S KY + + I G I +F T+K ++ ++ DG +
Sbjct: 316 RAIRQIVDVISESQKYNKLVKLLEDIMDGSRILVFLDTKKGCDQITRQLRMDGWPALSIH 375
Query: 351 GELTVEQRIAVLDRFRVGLEKVLITTNVLSRGIDVEQVTLVVNFDMPMDMNRKADCETYL 410
G+ + +R VL FR G ++ T+V +RG+DV+ V V+N+D P E Y+
Sbjct: 376 GDKSQAERDWVLSEFRSGKSPIMTATDVAARGLDVKDVKYVINYDFP------GSLEDYV 429
Query: 411 HRIGRTGRFGKAGIAINL--IDSPQAMEICTDIEAHFGKKI 449
HRIGRTGR G G A + + + + T+I G+K+
Sbjct: 430 HRIGRTGRAGAKGTAYTFFTVANARFAKELTNILQEAGQKV 470
>At5g26742.1 68418.m03161 DEAD box RNA helicase (RH3) nearly
identical to RNA helicase [Arabidopsis thaliana]
GI:3775987; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain, PF00098: Zinc knuckle
Length = 747
Score = 144 bits (349), Expect = 1e-34
Identities = 110/348 (31%), Positives = 183/348 (52%), Gaps = 34/348 (9%)
Query: 118 QNMIAQSQSGTGKTAAFVLAMLSRVDSNKN----------YPQVLCLSPTYELAIQTG-- 165
+++IA++++GTGKT AF + ++ R+ P+ L L+PT ELA Q
Sbjct: 140 RDIIARAKTGTGKTLAFGIPIIKRLTEEAGDYTAFRRSGRLPKFLVLAPTRELAKQVEKE 199
Query: 166 --EVAAKMAKFCPEIKLKYAVRGEELPRGSKITDHILIGTPGKMFDWGVKFGMFDMGKIK 223
E A ++ C + Y ++ L RG + ++GTPG++ D ++ +G+++
Sbjct: 200 IKESAPYLSTVCVYGGVSYTIQQSALTRGVDV----VVGTPGRIIDL-IEGRSLKLGEVE 254
Query: 224 VFVLDEADVMINRQGHQDQCIRIHKCLPSTCQMMFFSATYGTAVMQFAEIIVSNPIIIRL 283
VLDEAD M+ G ++ I + LP+ Q M FSAT T V + A + NP+ I L
Sbjct: 255 YLVLDEADQML-AVGFEEAVESILENLPTKRQSMLFSATMPTWVKKLARKYLDNPLNIDL 313
Query: 284 L--REEESLDNIKQYYVKCKSAEDKYRAICNIYGVITIG-QAIIFCHTRKTASWLSEKMS 340
+ ++E+ + IK Y + S K + ++ V G + I+F T++ A +S +S
Sbjct: 314 VGDQDEKLAEGIKLYAIATTSTS-KRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALS 372
Query: 341 KDGHSVAVLSGELTVEQRIAVLDRFRVGLEKVLITTNVLSRGIDVEQVTLVVNFDMPMDM 400
+ + L G+++ QR L+ FR G VL+ T+V SRG+D+ V LV+++++P D
Sbjct: 373 -NSIATEALHGDISQHQRERTLNAFRQGKFTVLVATDVASRGLDIPNVDLVIHYELPNDP 431
Query: 401 NRKADCETYLHRIGRTGRFGKAGIAINLIDSPQAMEICT---DIEAHF 445
ET++HR GRTGR GK G AI + S Q + + D+ HF
Sbjct: 432 ------ETFVHRSGRTGRAGKEGSAILMHTSSQKRTVRSLERDVGCHF 473
>At5g14610.1 68418.m01713 DEAD box RNA helicase, putative similar to
RNA helicase DRH1 [Arabidopsis thaliana] GI:3149952;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain, PF00397:
WW domain
Length = 713
Score = 142 bits (345), Expect = 3e-34
Identities = 102/353 (28%), Positives = 185/353 (52%), Gaps = 25/353 (7%)
Query: 93 VYAMGFNAPSKIQETALPTLLADPPQNMIAQSQSGTGKTAAFVLA---MLSRVDSNKNY- 148
VY+ GF+APS IQ + P + + ++++A +++G+GKT +++ L R+ ++
Sbjct: 244 VYSAGFSAPSPIQAQSWPIAMQN--RDIVAIAKTGSGKTLGYLIPGFMHLQRIHNDSRMG 301
Query: 149 PQVLCLSPTYELAIQTGEVAAKMAKFCPEIKLKYAVRGEELPRGSKITD-----HILIGT 203
P +L LSPT ELA Q + + KF K+ A P+G ++ + I++ T
Sbjct: 302 PTILVLSPTRELATQ---IQVEALKFGKSSKISCACLYGGAPKGPQLKEIERGVDIVVAT 358
Query: 204 PGKMFDWGVKFGMFDMGKIKVFVLDEADVMINRQGHQDQCIRIHKCLPSTCQMMFFSATY 263
PG++ D ++ + ++ VLDEAD M++ G + Q +I +P+ Q + ++AT+
Sbjct: 359 PGRLNDI-LEMKRISLHQVSYLVLDEADRMLD-MGFEPQIRKIVNEVPTKRQTLMYTATW 416
Query: 264 GTAVMQFAEIIVSNPIIIRLLREEESLDNIK-QYYVKCKSAEDKYRAICNIYGVITIG-Q 321
V + A ++ NP + + +E + N ++ + +K+ + I G +
Sbjct: 417 PKEVRKIAADLLVNPAQVNIGNVDELVANKSITQTIEVLAPMEKHSRLEQILRSQEPGSK 476
Query: 322 AIIFCHTRKTASWLSEKMSKDGHSVAVLSGELTVEQRIAVLDRFRVGLEKVLITTNVLSR 381
IIFC T++ L+ +++ A + G+ + +R VL++FR G VL+ T+V +R
Sbjct: 477 IIIFCSTKRMCDQLARNLTRT-FGAAAIHGDKSQAERDDVLNQFRSGRTPVLVATDVAAR 535
Query: 382 GIDVEQVTLVVNFDMPMDMNRKADCETYLHRIGRTGRFGKAGIAINLIDSPQA 434
G+DV+ + +VVN+D P + E Y+HRIGRTGR G G+A A
Sbjct: 536 GLDVKDIRVVVNYDFPNGV------EDYVHRIGRTGRAGATGLAYTFFGDQDA 582
>At3g58570.1 68416.m06528 DEAD box RNA helicase, putative similar to
SP|O00571 DEAD-box protein 3 (Helicase-like protein 2)
{Homo sapiens}, DEAD box RNA helicase DDX3 [Homo
sapiens] GI:3523150; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 646
Score = 141 bits (342), Expect = 8e-34
Identities = 112/391 (28%), Positives = 192/391 (49%), Gaps = 35/391 (8%)
Query: 58 ESKLDIEIQRKDPNSPLYSVKTFEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPP 117
E+ DI I+ N P V TF + L L + + P+ +Q A+P L A
Sbjct: 127 EAYEDIPIETSGDNVPP-PVNTFAEIDLGEALNLNIQRCKYVKPTPVQRNAIPILAAG-- 183
Query: 118 QNMIAQSQSGTGKTAAFVLAMLSRVDSNKN----------YPQVLCLSPTYELAIQTGEV 167
++++A +Q+G+GKTAAF ++S + +++ YP + LSPT ELA Q +
Sbjct: 184 RDLMACAQTGSGKTAAFCFPIISGIMKDQHIERPRGVRGVYPLAVILSPTRELACQIHDE 243
Query: 168 AAKMAKFCPEIKLKYAVRGEELPRGSKITDH---ILIGTPGKMFDWGVKFGMFDMGKIKV 224
A K + + +K+ A G + + + + IL+ TPG++ D ++ G + ++
Sbjct: 244 ARKFS-YQTGVKVVVAYGGTPVNQQIRELERGVDILVATPGRLNDL-LERGRVSLQMVRF 301
Query: 225 FVLDEADVMINRQGHQDQCIRIHKCL----PSTCQMMFFSATYGTAVMQFAEIIVSNPII 280
LDEAD M++ G + Q +I + + P Q M FSAT+ + + A +SN I
Sbjct: 302 LALDEADRMLD-MGFEPQIRKIVQQMDMPPPGVRQTMLFSATFPREIQRLASDFLSNYIF 360
Query: 281 IRLLREEESLDNIKQYYVKCKSAEDKYRAICNIYGVITIGQ------AIIFCHTRKTASW 334
+ + R S D I Q ++ + + ++ G ++F T+K A
Sbjct: 361 LAVGRVGSSTDLIVQRVEFVHDSDKRSHLMDLLHAQRENGNQGKQALTLVFVETKKGADS 420
Query: 335 LSEKMSKDGHSVAVLSGELTVEQRIAVLDRFRVGLEKVLITTNVLSRGIDVEQVTLVVNF 394
L + +G + G+ + ++R L F+ G +L+ T+V +RG+D+ V VVNF
Sbjct: 421 LENWLCINGFPATTIHGDRSQQEREVALRSFKTGRTPILVATDVAARGLDIPHVAHVVNF 480
Query: 395 DMPMDMNRKADCETYLHRIGRTGRFGKAGIA 425
D+P D+ + Y+HRIGRTGR G +G+A
Sbjct: 481 DLPNDI------DDYVHRIGRTGRAGNSGLA 505
>At5g08620.1 68418.m01025 DEAD box RNA helicase (RH25) identical to
RNA helicase [Arabidopsis thaliana] GI:3776023; contains
Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 563
Score = 141 bits (341), Expect = 1e-33
Identities = 119/384 (30%), Positives = 191/384 (49%), Gaps = 40/384 (10%)
Query: 72 SPLYSVKT-FEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMIAQSQSGTGK 130
S Y KT F+ L P LKG+ GF + +QE LP +L ++++A++++GTGK
Sbjct: 73 SDSYLSKTRFDQFPLSPLTLKGIEDAGFKTMTVVQEATLPLILQG--KDILAKAKTGTGK 130
Query: 131 TAAFVLAMLSRV-------DSNKNYPQ-VLCLSPTYELAIQTGEVAAKMAKFCPEIKLKY 182
T AF+L + V N++ P VL + PT ELA Q A + K+ P I ++
Sbjct: 131 TVAFLLPSIEAVIKAPPASRDNRHPPIIVLVVCPTRELACQAAAEANILLKYHPSIGVQV 190
Query: 183 AVRGEELP----RGSKITDHILIGTPGKM---FDWGVKFGMFDMGKIKVFVLDEADVMIN 235
+ G +LP R K IL+ TPG++ D F MG +KV VLDEAD +++
Sbjct: 191 VIGGTKLPTEQRRLQKSPCQILVATPGRLKDHIDNTSGFATRLMG-VKVLVLDEADHLLD 249
Query: 236 RQGHQDQCIRIHKCLPSTCQMMFFSATYGTAVMQFAEIIVSNPI-IIRLLREE--ESLDN 292
G + + RI +P Q FSAT V Q + + + ++E E+
Sbjct: 250 -MGFRREIERIIAAVPKQRQTFLFSATVSDEVRQICHVALKRDHEFVNCVQEGAGETHQK 308
Query: 293 IKQYYVKCKSAEDKYRAICNIYGVI------TIG-QAIIFCHTRKTASWLSEKMSKDGHS 345
+ Q Y+ ++ D++ ++ +YG++ +G + IIFC T +++ + K +
Sbjct: 309 VSQMYMI--ASLDRHFSL--LYGLLKKHITDNVGYKVIIFCTTAMVTRLVADLLGKLSLN 364
Query: 346 VAVLSGELTVEQRIAVLDRFRVGLEKVLITTNVLSRGIDVEQVTLVVNFDMPMDMNRKAD 405
V + R V D FR +L+T++V +RG+D V+LVV +P +D
Sbjct: 365 VREIHSRKPQSYRTRVSDEFRKSKSIILVTSDVSARGVDYPDVSLVVQMGLP------SD 418
Query: 406 CETYLHRIGRTGRFGKAGIAINLI 429
E Y+HR+GRTGR GK G + L+
Sbjct: 419 REQYIHRLGRTGRKGKEGEGVLLL 442
>At2g47330.1 68415.m05908 DEAD/DEAH box helicase, putative similar
to RNA helicase [Rattus norvegicus] GI:897915; contains
Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 760
Score = 141 bits (341), Expect = 1e-33
Identities = 113/385 (29%), Positives = 190/385 (49%), Gaps = 24/385 (6%)
Query: 60 KLDIEIQRKDPNSPLYSVKTFEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQN 119
+L I + D + P VKTFE ++ + + P+ IQ ALP +L+ ++
Sbjct: 213 RLGIRVSGFDVHRP---VKTFEDCGFSSQIMSAIKKQAYEKPTAIQCQALPIVLSG--RD 267
Query: 120 MIAQSQSGTGKTAAFVLAMLSRVDSNKNYPQ------VLCLSPTYELAIQTGEVAAKMAK 173
+I +++G+GKTAAFVL M+ + + V+C +PT ELA Q A K +K
Sbjct: 268 VIGIAKTGSGKTAAFVLPMIVHIMDQPELQRDEGPIGVIC-APTRELAHQIFLEAKKFSK 326
Query: 174 -FCPEIKLKYA-VRGEELPRGSKITDHILIGTPGKMFDWGVKFGMFDMGKIKVFVLDEAD 231
+ + Y + E + K I++ TPG++ D +K M + VLDEAD
Sbjct: 327 AYGLRVSAVYGGMSKHEQFKELKAGCEIVVATPGRLIDM-LKMKALTMMRASYLVLDEAD 385
Query: 232 VMINRQGHQDQCIRIHKCLPSTCQMMFFSATYGTAVMQFAEIIVSNPIIIRLLREEESLD 291
M + G + Q I + Q + FSAT V + A I+S+PI + + + +
Sbjct: 386 RMFDL-GFEPQVRSIVGQIRPDRQTLLFSATMPWKVEKLAREILSDPIRVTVGEVGMANE 444
Query: 292 NIKQYYVKCKSAEDKYRAICN-IYGVITIGQAIIFCHTRKTASWLSEKMSKDGHSVAVLS 350
+I Q S +K + + G+I G ++F + T + +++ + VA L
Sbjct: 445 DITQVVNVIPSDAEKLPWLLEKLPGMIDEGDVLVFASKKATVDEIEAQLTLNSFKVAALH 504
Query: 351 GELTVEQRIAVLDRFRVGLEKVLITTNVLSRGIDVEQVTLVVNFDMPMDMNRKADCETYL 410
G+ R+ L +F+ G+ VLI T+V +RG+D++ + VVN+D+ DM + ++
Sbjct: 505 GDKDQASRMETLQKFKSGVHHVLIATDVAARGLDIKSLKTVVNYDIAKDM------DMHV 558
Query: 411 HRIGRTGRFG-KAGIAINLIDSPQA 434
HRIGRTGR G + G+A L+ +A
Sbjct: 559 HRIGRTGRAGDRDGVAYTLVTQREA 583
>At5g63120.2 68418.m07924 ethylene-responsive DEAD box RNA helicase,
putative (RH30) strong similarity to ethylene-responsive
RNA helicase [Lycopersicon esculentum] GI:5669638;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 591
Score = 140 bits (340), Expect = 1e-33
Identities = 105/390 (26%), Positives = 185/390 (47%), Gaps = 27/390 (6%)
Query: 56 LVESKLDIEIQRKDPNSPLYSVKTFEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLAD 115
+ ++ DI ++ +D P+ K F+ + N+L+ + +GF P+ IQ P L
Sbjct: 146 MYRTERDISVEGRDVPKPM---KMFQDANFPDNILEAIAKLGFTEPTPIQAQGWPMALKG 202
Query: 116 PPQNMIAQSQSGTGKTAAFVLAMLSRVDSNKNY-----PQVLCLSPTYELAIQTGEVAAK 170
+++I +++G+GKT A++L L V + P VL L+PT ELA+Q E + K
Sbjct: 203 --RDLIGIAETGSGKTLAYLLPALVHVSAQPRLGQDDGPIVLILAPTRELAVQIQEESRK 260
Query: 171 MAKFCPEIKLKYAVRGEELPRGSKITD-----HILIGTPGKMFDWGVKFGMFDMGKIKVF 225
++ G P+G +I D I+I TPG++ D ++ ++ ++
Sbjct: 261 FG-LRSGVRSTCIYGGA--PKGPQIRDLRRGVEIVIATPGRLIDM-LECQHTNLKRVTYL 316
Query: 226 VLDEADVMINRQGHQDQCIRIHKCLPSTCQMMFFSATYGTAVMQFAEIIVSNPIIIRLLR 285
VLDEAD M++ G + Q +I + Q + +SAT+ V A + +P +
Sbjct: 317 VLDEADRMLD-MGFEPQIRKIVSQIRPDRQTLLWSATWPREVETLARQFLRDPYKAIIGS 375
Query: 286 EEESLDNIKQYYVKCKSAEDKYRAICNIYGVITIGQAI-IFCHTRKTASWLSEKMSKDGH 344
+ + ++ +KY + + + G I IF T++ ++ ++ DG
Sbjct: 376 TDLKANQSINQVIEIVPTPEKYNRLLTLLKQLMDGSKILIFVETKRGCDQVTRQLRMDGW 435
Query: 345 SVAVLSGELTVEQRIAVLDRFRVGLEKVLITTNVLSRGIDVEQVTLVVNFDMPMDMNRKA 404
+ G+ T +R VL F+ G ++ T+V +RG+DV+ + VVN+D P +
Sbjct: 436 PALAIHGDKTQSERDRVLAEFKSGRSPIMTATDVAARGLDVKDIKCVVNYDFPNTL---- 491
Query: 405 DCETYLHRIGRTGRFGKAGIAINLIDSPQA 434
E Y+HRIGRTGR G G+A A
Sbjct: 492 --EDYIHRIGRTGRAGAKGMAFTFFTHDNA 519
>At3g09720.1 68416.m01151 DEAD/DEAH box helicase, putative similar
to RNA helicase involved in rRNA processing GB:6321267
from [Saccharomyces cerevisiae]c, ontains DEAD and DEAH
box domain
Length = 541
Score = 140 bits (340), Expect = 1e-33
Identities = 108/407 (26%), Positives = 197/407 (48%), Gaps = 22/407 (5%)
Query: 26 KHNQETDSDDVPDTPNAADTSLLMKIIRQGLVESKLDIEIQRKDPNSPLYSVKTFEALH- 84
K ++ +++ + P L ++ R L + I + + PL S + +
Sbjct: 91 KAEEQITKNEIVENPKK---ELNRQMERDALSRKQYSIHVSGNNIPPPLKSFAELSSRYG 147
Query: 85 LKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMIAQSQSGTGKTAAFVLAMLSRVDS 144
+ +L+ + +GF P+ IQ A+P LL+ + A + +G+GKT AF+ ML ++
Sbjct: 148 CEGYILRNLAELGFKEPTPIQRQAIPILLSG--RECFACAPTGSGKTFAFICPMLIKLKR 205
Query: 145 -NKNYPQVLCLSPTYELAIQTGEVAAKMAK---FCPEIKLKYAVRGEELPRGSKITDHIL 200
+ + + + LSP ELA QT K+ K F + K V+ + SK+ +L
Sbjct: 206 PSTDGIRAVILSPARELAAQTAREGKKLIKGSNFHIRLMTKPLVKTADF---SKLWCDVL 262
Query: 201 IGTPGKMFDWGVKFGMFDMGKIKVFVLDEADVMINRQG-HQDQCIRIHKCLPSTCQMMFF 259
I TP ++ +K D+ K++ VLDE+D + + Q C+ + C + F
Sbjct: 263 ISTPMRL-KRAIKAKKIDLSKVEYLVLDESDKLFEQSLLKQIDCV-VKACSNPSIIRSLF 320
Query: 260 SATYGTAVMQFAEIIVSNPIIIRLLREEESLDNIKQYYVKCKSAEDKYRAICNIYGVITI 319
SAT +V + A I+ + + + + R+ + + +KQ V S E K A+ +
Sbjct: 321 SATLPDSVEELARSIMHDAVRVIIGRKNTASETVKQKLVFAGSEEGKLLALRQSFAESLN 380
Query: 320 GQAIIFCHTRKTASWLSEKMSKDGHSVAVLSGELTVEQRIAVLDRFRVGLEKVLITTNVL 379
+IF +++ A L +++ + V+ +L +R +D+FR G + VLI T+V+
Sbjct: 381 PPVLIFVQSKERAKELYDELKCENIRAGVIHSDLPPGERENAVDQFRAGEKWVLIATDVI 440
Query: 380 SRGIDVEQVTLVVNFDMPMDMNRKADCETYLHRIGRTGRFGKAGIAI 426
+RG+D + + V+N+D P Y+HRIGR+GR G++G AI
Sbjct: 441 ARGMDFKGINCVINYDFP------DSASAYIHRIGRSGRAGRSGEAI 481
>At3g58510.2 68416.m06522 DEAD box RNA helicase, putative (RH11)
similar to RNA helicase DBY protein [Mus musculus]
GI:3790186, SP|O00571 DEAD-box protein 3 (Helicase-like
protein 2) {Homo sapiens}; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain; identical to cDNA DEAD box
RNA helicase, RH11 GI:3775998
Length = 612
Score = 139 bits (336), Expect = 4e-33
Identities = 114/386 (29%), Positives = 192/386 (49%), Gaps = 35/386 (9%)
Query: 62 DIEIQRKDPNSPLYSVKTFEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMI 121
DI ++ + P V TF + L L + + P+ +Q A+P LLA+ ++++
Sbjct: 136 DIPVETSGGDVPP-PVNTFADIDLGDALNLNIRRCKYVRPTPVQRHAIPILLAE--RDLM 192
Query: 122 AQSQSGTGKTAAFVLAMLSRVDSNKN----------YPQVLCLSPTYELAIQTGEVAAKM 171
A +Q+G+GKTAAF ++S + +++ YP + LSPT ELA Q + A K
Sbjct: 193 ACAQTGSGKTAAFCFPIISGIMKDQHVERPRGSRAVYPFAVILSPTRELACQIHDEAKKF 252
Query: 172 AKFCPEIKLKYAVRGEELPRGSKITDH---ILIGTPGKMFDWGVKFGMFDMGKIKVFVLD 228
+ + +K+ A G + + + + IL+ TPG++ D ++ M I+ LD
Sbjct: 253 S-YQTGVKVVVAYGGTPIHQQLRELERGCDILVATPGRLNDL-LERARVSMQMIRFLALD 310
Query: 229 EADVMINRQGHQDQCIRIHKCLP----STCQMMFFSATYGTAVMQFAEIIVSNPIIIRLL 284
EAD M++ G + Q +I + + Q M FSAT+ + + + A +SN I + +
Sbjct: 311 EADRMLD-MGFEPQIRKIVEQMDMPPRGVRQTMLFSATFPSQIQRLAADFMSNYIFLAVG 369
Query: 285 REEESLDNIKQYYVKCKSAEDKYRAICNIYGVITIGQ-----AIIFCHTRKTASWLSEKM 339
R S D I Q V+ DK + ++ Q ++F T++ A L +
Sbjct: 370 RVGSSTDLITQR-VEFVQESDKRSHLMDLLHAQRETQDKQSLTLVFVETKRGADTLENWL 428
Query: 340 SKDGHSVAVLSGELTVEQRIAVLDRFRVGLEKVLITTNVLSRGIDVEQVTLVVNFDMPMD 399
+ + G+ T ++R L F+ G +L+ T+V +RG+D+ V VVNFD+P D
Sbjct: 429 CMNEFPATSIHGDRTQQEREVALRSFKTGRTPILVATDVAARGLDIPHVAHVVNFDLPND 488
Query: 400 MNRKADCETYLHRIGRTGRFGKAGIA 425
+ + Y+HRIGRTGR GK+GIA
Sbjct: 489 I------DDYVHRIGRTGRAGKSGIA 508
>At3g58510.1 68416.m06521 DEAD box RNA helicase, putative (RH11)
similar to RNA helicase DBY protein [Mus musculus]
GI:3790186, SP|O00571 DEAD-box protein 3 (Helicase-like
protein 2) {Homo sapiens}; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain; identical to cDNA DEAD box
RNA helicase, RH11 GI:3775998
Length = 612
Score = 139 bits (336), Expect = 4e-33
Identities = 114/386 (29%), Positives = 192/386 (49%), Gaps = 35/386 (9%)
Query: 62 DIEIQRKDPNSPLYSVKTFEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMI 121
DI ++ + P V TF + L L + + P+ +Q A+P LLA+ ++++
Sbjct: 136 DIPVETSGGDVPP-PVNTFADIDLGDALNLNIRRCKYVRPTPVQRHAIPILLAE--RDLM 192
Query: 122 AQSQSGTGKTAAFVLAMLSRVDSNKN----------YPQVLCLSPTYELAIQTGEVAAKM 171
A +Q+G+GKTAAF ++S + +++ YP + LSPT ELA Q + A K
Sbjct: 193 ACAQTGSGKTAAFCFPIISGIMKDQHVERPRGSRAVYPFAVILSPTRELACQIHDEAKKF 252
Query: 172 AKFCPEIKLKYAVRGEELPRGSKITDH---ILIGTPGKMFDWGVKFGMFDMGKIKVFVLD 228
+ + +K+ A G + + + + IL+ TPG++ D ++ M I+ LD
Sbjct: 253 S-YQTGVKVVVAYGGTPIHQQLRELERGCDILVATPGRLNDL-LERARVSMQMIRFLALD 310
Query: 229 EADVMINRQGHQDQCIRIHKCLP----STCQMMFFSATYGTAVMQFAEIIVSNPIIIRLL 284
EAD M++ G + Q +I + + Q M FSAT+ + + + A +SN I + +
Sbjct: 311 EADRMLD-MGFEPQIRKIVEQMDMPPRGVRQTMLFSATFPSQIQRLAADFMSNYIFLAVG 369
Query: 285 REEESLDNIKQYYVKCKSAEDKYRAICNIYGVITIGQ-----AIIFCHTRKTASWLSEKM 339
R S D I Q V+ DK + ++ Q ++F T++ A L +
Sbjct: 370 RVGSSTDLITQR-VEFVQESDKRSHLMDLLHAQRETQDKQSLTLVFVETKRGADTLENWL 428
Query: 340 SKDGHSVAVLSGELTVEQRIAVLDRFRVGLEKVLITTNVLSRGIDVEQVTLVVNFDMPMD 399
+ + G+ T ++R L F+ G +L+ T+V +RG+D+ V VVNFD+P D
Sbjct: 429 CMNEFPATSIHGDRTQQEREVALRSFKTGRTPILVATDVAARGLDIPHVAHVVNFDLPND 488
Query: 400 MNRKADCETYLHRIGRTGRFGKAGIA 425
+ + Y+HRIGRTGR GK+GIA
Sbjct: 489 I------DDYVHRIGRTGRAGKSGIA 508
>At3g22310.1 68416.m02818 DEAD box RNA helicase, putative (RH9)
similar to RNA helicases GI:3775995, GI:3775987
[Arabidopsis thaliana]; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 610
Score = 138 bits (333), Expect = 1e-32
Identities = 114/383 (29%), Positives = 186/383 (48%), Gaps = 30/383 (7%)
Query: 83 LHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMIAQSQSGTGKTAAFVLAMLSRV 142
L + P ++K + G IQ+ L + ++MI ++++GTGKT AF + ++ ++
Sbjct: 121 LGISPEIVKALKGRGIEKLFPIQKAVLEPAMEG--RDMIGRARTGTGKTLAFGIPIIDKI 178
Query: 143 -------DSNKNYPQVLCLSPTYELAIQTGEVAAKMAKFCPEIKLKYAVRGEELPRGSKI 195
KN PQ L L+PT ELA Q + + A I L + R
Sbjct: 179 IKFNAKHGRGKN-PQCLVLAPTRELARQVEKEFRESAPSLDTICLYGGTPIGQQMRELNY 237
Query: 196 TDHILIGTPGKMFDWGVKFGMFDMGKIKVFVLDEADVMINRQGHQDQCIRIHKCLPSTCQ 255
+ +GTPG++ D +K G ++ +++ VLDEAD M+ +D I + K LP+ Q
Sbjct: 238 GIDVAVGTPGRIIDL-MKRGALNLSEVQFVVLDEADQMLQVGFAEDVEIILQK-LPAKRQ 295
Query: 256 MMFFSATYGTAVMQFAEIIVSNPIIIRLLREEES--LDNIKQYYVKCKSAEDKYRAICNI 313
M FSAT + + + ++NP+ I L+ + + D I Y + A D Y I
Sbjct: 296 SMMFSATMPSWIRSLTKKYLNNPLTIDLVGDSDQKLADGITMYSI----AADSYGRASII 351
Query: 314 YGVITI----GQAIIFCHTRKTASWLSEKMSKDGHSVAVLSGELTVEQRIAVLDRFRVGL 369
++ G+ I+F T++ A L+ ++K + L G+++ QR L FR G
Sbjct: 352 GPLVKEHGKGGKCIVFTQTKRDADRLAFGLAKS-YKCEALHGDISQAQRERTLAGFRDGN 410
Query: 370 EKVLITTNVLSRGIDVEQVTLVVNFDMPMDMNRKADCETYLHRIGRTGRFGKAGIAINLI 429
+L+ T+V +RG+DV V LV+++++P + ET++HR GRTGR GK G AI LI
Sbjct: 411 FSILVATDVAARGLDVPNVDLVIHYELP------NNTETFVHRTGRTGRAGKKGSAI-LI 463
Query: 430 DSPQAMEICTDIEAHFGKKIQLL 452
IE G + L
Sbjct: 464 HGQDQTRAVKMIEKEVGSRFNEL 486
>At4g16630.1 68417.m02514 DEAD/DEAH box helicase, putative (RH28)
identical to cDNA DEAD box RNA helicase, RH28 GI:3776026
Length = 789
Score = 136 bits (330), Expect = 2e-32
Identities = 107/371 (28%), Positives = 178/371 (47%), Gaps = 21/371 (5%)
Query: 75 YSVKTFEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMIAQSQSGTGKTAAF 134
+ TF L+L LL+ +G+ P+ IQ +P L +++ A + +G+GKTAAF
Sbjct: 164 FHADTFMELNLSRPLLRACETLGYKKPTPIQAACIPLALTG--RDLCASAITGSGKTAAF 221
Query: 135 VLAMLSRV---DSNKNYPQVLCLSPTYELAIQTGEVAAKMAKF----CPEIKLKYAVRGE 187
L L R+ +VL L+PT ELA+Q + +A+F C I +VR +
Sbjct: 222 ALPTLERLLFRPKRVFATRVLILTPTRELAVQIHSMIQNLAQFTDIKCGLIVGGLSVREQ 281
Query: 188 ELPRGSKITDHILIGTPGKMFDWGVKFGMFDMGKIKVFVLDEADVMINRQGHQDQCIRIH 247
E+ S I++ TPG+M D D+ + V +LDEAD ++ + G + +
Sbjct: 282 EVVLRSM--PDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLL-QTGFATEITELV 338
Query: 248 KCLPSTCQMMFFSATYGTAVMQFAEIIVSNPIIIRLLREEESLDNIKQYYVKCK-SAEDK 306
+ P Q M FSAT V + ++ ++ P+ + + + V+ + + E
Sbjct: 339 RLCPKRRQTMLFSATMTEEVKELVKLSLNKPLRLSADPSARRPPGLTEEVVRIRRTREAN 398
Query: 307 YRAICNIYGVITI-GQAIIFCHTRKTASWLSEKMSKDGHSVAVLSGELTVEQRIAVLDRF 365
A+ T + IIF T++ A L G A L G LT QR+ L+ F
Sbjct: 399 QEAVLLSLCTRTFKSKVIIFSGTKQAAHRLKILFGLAGLKAAELHGNLTQAQRLDSLELF 458
Query: 366 RVGLEKVLITTNVLSRGIDVEQVTLVVNFDMPMDMNRKADCETYLHRIGRTGRFGKAGIA 425
R LI T+V +RG+D+ V V+N+ P ++ ++Y+HR+GRT R G+ G A
Sbjct: 459 RKQEVDFLIATDVAARGLDIIGVQTVINYACPREI------DSYVHRVGRTARAGREGYA 512
Query: 426 INLI-DSPQAM 435
+ + DS +++
Sbjct: 513 VTFVTDSDRSL 523
>At3g02065.2 68416.m00170 DEAD/DEAH box helicase family protein
contains Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 505
Score = 136 bits (330), Expect = 2e-32
Identities = 115/390 (29%), Positives = 192/390 (49%), Gaps = 30/390 (7%)
Query: 56 LVESKLDIEIQRKDPNSPLYSVKTFEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLAD 115
L+ KLDI +Q + P V TF + L P LL + G++ P+ IQ A+P L
Sbjct: 89 LLRRKLDIHVQGQGSAVPP-PVLTFTSCGLPPKLLLNLETAGYDFPTPIQMQAIPAALTG 147
Query: 116 PPQNMIAQSQSGTGKTAAFVLAMLSRV---------DSNKNYPQVLCLSPTYELAIQTGE 166
++++A + +G+GKTA+F++ ++SR D +N P + L+PT EL +Q +
Sbjct: 148 --KSLLASADTGSGKTASFLVPIISRCTTYHSEHPSDQRRN-PLAMVLAPTRELCVQVED 204
Query: 167 VAAKMAKFCPEIKLKYAVRGEELP-RGSKITD--HILIGTPGKMFDWGVKFGMFDMGKIK 223
A + K P K V G+ + + +I ++IGTPG++ D K + ++ I
Sbjct: 205 QAKMLGKGLP-FKTALVVGGDPMSGQLYRIQQGVELIIGTPGRVVDLLSKHTI-ELDNIM 262
Query: 224 VFVLDEADVMINRQGHQDQCIRIHKCLPSTCQMMFFSATYGTAVMQFAEIIVSNPIIIRL 283
FVLDE D M+ R G +DQ ++I + L S Q++ FSAT V + + I++ +
Sbjct: 263 TFVLDEVDCMLQR-GFRDQVMQIFQAL-SQPQVLLFSATISREVEKVGGSLAKEIILVSI 320
Query: 284 LREEESLDNIKQY--YVKCKSAEDKYRAICNIYGVITIGQAIIFCHTRKTASWLSEKMSK 341
+ + Q +V K + K I A+++ +R A L+ ++
Sbjct: 321 GNPNKPNKAVNQLAIWVDAKQKKQKLFDILRSQNHFK-PPAVVYVSSRVGADLLANAITV 379
Query: 342 -DGHSVAVLSGELTVEQRIAVLDRFRVGLEKVLITTNVLSRGIDVEQVTLVVNFDMPMDM 400
G + GE +++R V+ F G VL++T VL RG+D+ V V+ FDMP
Sbjct: 380 VTGVKALSIHGEKPMKERRDVMGSFLGGEVPVLVSTGVLGRGVDLLVVRQVIVFDMP--- 436
Query: 401 NRKADCETYLHRIGRTGRFGKAGIAINLID 430
+ + Y+H IGR R G+ G AI ++
Sbjct: 437 ---STIKEYIHVIGRASRMGEKGTAIVFVN 463
>At5g08610.1 68418.m01024 DEAD box RNA helicase (RH26) strong
similarity to RNA helicase RH26 [Arabidopsis thaliana]
GI:3776025; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain; identical to cDNA DEAD box RNA helicase, RH26
GI:3776024
Length = 850
Score = 136 bits (328), Expect = 4e-32
Identities = 119/418 (28%), Positives = 194/418 (46%), Gaps = 32/418 (7%)
Query: 33 SDDVPDTPNAADTSLLMKIIRQGLVESKLDIEIQRKDPNSPLYSVKTFEALHLKPNLLKG 92
S+D D + D L+ K V++ K +S L + F+ L P LK
Sbjct: 338 SEDSSDEDDENDEPLIKKAASAKAVQTDKPTGEHVKTSDSYLSKTR-FDQFPLSPLSLKA 396
Query: 93 VYAMGFNAPSKIQETALPTLLADPPQNMIAQSQSGTGKTAAFVLAMLSRV--------DS 144
+ GF + +QE LP +L ++++A++++GTGKT AF+L + V DS
Sbjct: 397 IKDAGFETMTVVQEATLPIILQG--KDVLAKAKTGTGKTVAFLLPAIEAVIKSPPASRDS 454
Query: 145 NKNYPQVLCLSPTYELAIQTGEVAAKMAKFCPEIKLKYAVRGEELPRGSKITD----HIL 200
+ VL + PT ELA Q A + K+ P I ++ + G +LP + IL
Sbjct: 455 RQPPIIVLVVCPTRELASQAAAEANTLLKYHPSIGVQVVIGGTKLPTEQRRMQTNPCQIL 514
Query: 201 IGTPGKMFDWGVKFGMFD---MGKIKVFVLDEADVMINRQGHQDQCIRIHKCLPSTCQMM 257
+ TPG++ D F MG +KV VLDEAD +++ G + RI +P Q
Sbjct: 515 VATPGRLKDHIENTSGFATRLMG-VKVLVLDEADHLLD-MGFRRDIERIIAAVPKQRQTF 572
Query: 258 FFSATYGTAVMQFAEIIVSNPI-IIRLLREEESLDNIKQYYVKCKSAEDKYRAICNIYGV 316
FSAT V Q + + I ++E + K + ++ D++ ++ ++
Sbjct: 573 LFSATVPEEVRQICHVALKRDHEFINCVQEGSGETHQKVTQMYMIASLDRHFSLLHVLLK 632
Query: 317 ITIG-----QAIIFCHTRKTASWLSEKMSKDGHSVAVLSGELTVEQRIAVLDRFRVGLEK 371
I + IIFC T +++ +S+ +V + R V D FR
Sbjct: 633 EHIADNVDYKVIIFCTTAMVTRLVADLLSQLSLNVREIHSRKPQSYRTRVSDEFRKSKAI 692
Query: 372 VLITTNVLSRGIDVEQVTLVVNFDMPMDMNRKADCETYLHRIGRTGRFGKAGIAINLI 429
+L+T++V +RG+D V+LVV +P +D E Y+HR+GRTGR GK G + L+
Sbjct: 693 ILVTSDVSARGVDYPDVSLVVQMGLP------SDREQYIHRLGRTGRKGKEGEGVLLL 744
>At2g42520.1 68415.m05262 DEAD box RNA helicase, putative similar to
SP|O00571 DEAD-box protein 3 (Helicase-like protein 2)
{Homo sapiens}, DEAD box RNA helicase DDX3 [Homo
sapiens] GI:3523150; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 633
Score = 135 bits (326), Expect = 7e-32
Identities = 119/427 (27%), Positives = 204/427 (47%), Gaps = 38/427 (8%)
Query: 22 GLDKKHNQETDSDDVPDTPNAADTSLLMKIIRQGLVESKLDIEIQRKDPNSPLYSVKTFE 81
G D++ + ++ P A T +I E DI I+ N P V TF
Sbjct: 107 GWDRREREVNPFENDDSEPEPAFTEQDNTVINFDAYE---DIPIETSGDNVPP-PVNTFA 162
Query: 82 ALHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMIAQSQSGTGKTAAFVLAMLSR 141
+ L L + + P+ +Q A+P LL ++++A +Q+G+GKTAAF ++S
Sbjct: 163 EIDLGEALNLNIRRCKYVKPTPVQRHAIPILLEG--RDLMACAQTGSGKTAAFCFPIISG 220
Query: 142 VDSNKN----------YPQVLCLSPTYELAIQTGEVAAKMAKFCPEIKLKYAVRGEELPR 191
+ +++ YP + LSPT ELA Q + A K + + +K+ A G + +
Sbjct: 221 IMKDQHVQRPRGSRTVYPLAVILSPTRELASQIHDEAKKFS-YQTGVKVVVAYGGTPINQ 279
Query: 192 GSKITDH---ILIGTPGKMFDWGVKFGMFDMGKIKVFVLDEADVMINRQGHQDQCIRIHK 248
+ + IL+ TPG++ D ++ M I+ LDEAD M++ G + Q +I +
Sbjct: 280 QLRELERGVDILVATPGRLNDL-LERARVSMQMIRFLALDEADRMLD-MGFEPQIRKIVE 337
Query: 249 CLP----STCQMMFFSATYGTAVMQFAEIIVSNPIIIRLLREEESLDNIKQYYVKCKSAE 304
+ Q + FSAT+ + + A ++N I + + R S D I Q ++
Sbjct: 338 QMDMPPRGVRQTLLFSATFPREIQRLAADFLANYIFLAVGRVGSSTDLIVQRVEFVLDSD 397
Query: 305 DKYRAICNIYGVITIG----QAI--IFCHTRKTASWLSEKMSKDGHSVAVLSGELTVEQR 358
+ + ++ G QA+ +F T++ A L + +G + G+ T ++R
Sbjct: 398 KRSHLMDLLHAQRENGIQGKQALTLVFVETKRGADSLENWLCINGFPATSIHGDRTQQER 457
Query: 359 IAVLDRFRVGLEKVLITTNVLSRGIDVEQVTLVVNFDMPMDMNRKADCETYLHRIGRTGR 418
L F+ G +L+ T+V +RG+D+ V VVNFD+P D+ + Y+HRIGRTGR
Sbjct: 458 EVALKAFKSGRTPILVATDVAARGLDIPHVAHVVNFDLPNDI------DDYVHRIGRTGR 511
Query: 419 FGKAGIA 425
GK+G+A
Sbjct: 512 AGKSGLA 518
>At3g22330.1 68416.m02820 DEAD box RNA helicase, putative similar to
RNA helicases GI:3775995, GI:3775987 from [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 616
Score = 134 bits (325), Expect = 9e-32
Identities = 106/370 (28%), Positives = 186/370 (50%), Gaps = 33/370 (8%)
Query: 83 LHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMIAQSQSGTGKTAAFVLAMLSRV 142
L + P ++K + + G IQ+ L + ++MI ++++GTGKT AF + ++ ++
Sbjct: 109 LGISPEIVKALSSKGIEKLFPIQKAVLEPAMEG--RDMIGRARTGTGKTLAFGIPIIDKI 166
Query: 143 DS-NKNY-----PQVLCLSPTYELAIQTGEVAAKMAKFCPEIKLKYAVRGEELPRGSKIT 196
N + P L L+PT ELA Q V + + P + G + + +
Sbjct: 167 IKYNAKHGRGRNPLCLVLAPTRELARQ---VEKEFRESAPSLDTICLYGGTPIGQQMRQL 223
Query: 197 DH---ILIGTPGKMFDWGVKFGMFDMGKIKVFVLDEADVMINRQGHQDQCIRIHKCLPST 253
D+ + +GTPG++ D +K G ++ +++ VLDEAD M+ +D I + K LP
Sbjct: 224 DYGVDVAVGTPGRVIDL-MKRGALNLSEVQFVVLDEADQMLQVGFAEDVEIILEK-LPEK 281
Query: 254 CQMMFFSATYGTAVMQFAEIIVSNPIIIRLLREEES--LDNIKQYYVKCKSAEDKYRAIC 311
Q M FSAT + + + ++NP+ + L+ + + D I Y + D Y
Sbjct: 282 RQSMMFSATMPSWIRSLTKKYLNNPLTVDLVGDSDQKLADGITTYSI----IADSYGRAS 337
Query: 312 NIYGVITI----GQAIIFCHTRKTASWLSEKMSKDGHSVAVLSGELTVEQRIAVLDRFRV 367
I ++T G+ I+F T++ A LS +++ A L G+++ QR L FR
Sbjct: 338 IIGPLVTEHAKGGKCIVFTQTKRDADRLSYALARSFKCEA-LHGDISQSQRERTLAGFRD 396
Query: 368 GLEKVLITTNVLSRGIDVEQVTLVVNFDMPMDMNRKADCETYLHRIGRTGRFGKAGIAIN 427
G +L+ T+V +RG+DV V L++++++P + ET++HR GRTGR GK G AI
Sbjct: 397 GHFNILVATDVAARGLDVPNVDLIIHYELP------NNTETFVHRTGRTGRAGKKGSAIL 450
Query: 428 LIDSPQAMEI 437
+ Q+ +
Sbjct: 451 IYSQDQSRAV 460
>At5g65900.1 68418.m08295 DEAD/DEAH box helicase, putative contains
Pfam profiles PF00270:DEAD/DEAH box helicase and
PF00271: Helicase conserved C-terminal domain;
identical to cDNA RH27 helicase, partial GI:4033334
Length = 633
Score = 131 bits (317), Expect = 8e-31
Identities = 111/392 (28%), Positives = 194/392 (49%), Gaps = 21/392 (5%)
Query: 62 DIEIQRKDPNSPLYSVKTFEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMI 121
D E ++K + + + KTFE+L L N K + MGF ++IQ A+P L+ ++++
Sbjct: 138 DKEEEKKLEETSIMTNKTFESLSLSDNTYKSIKEMGFARMTQIQAKAIPPLMMG--EDVL 195
Query: 122 AQSQSGTGKTAAFVL---AMLSRVD-SNKNYPQVLCLSPTYELAIQTGEVAAKMAKFCPE 177
+++G+GKT AF++ +L RV + +N VL + PT ELAIQ+ VA ++ K+ +
Sbjct: 196 GAARTGSGKTLAFLIPAVELLYRVKFTPRNGTGVLVICPTRELAIQSYGVAKELLKYHSQ 255
Query: 178 IKLKYAVRGEELPRGSKITD---HILIGTPGKMFDWGVKFGMFDMGKIKVFVLDEADVMI 234
K + GE+ ++I ++L+ TPG++ D F +K V+DEAD I
Sbjct: 256 TVGK-VIGGEKRKTEAEILAKGVNLLVATPGRLLDHLENTNGFIFKNLKFLVMDEAD-RI 313
Query: 235 NRQGHQDQCIRIHKCLPSTCQMMFFSATYGTAVMQFAEIIVSNPIIIRL--LREEESLDN 292
Q ++ +I LP T Q FSAT V A + +++P+ I + R+E + +
Sbjct: 314 LEQNFEEDLKKILNLLPKTRQTSLFSATQSAKVEDLARVSLTSPVYIDVDEGRKEVTNEG 373
Query: 293 IKQYYVKCKSAEDKYRAICNIYGVITIGQAIIFCHTRKTASWLSEKMSKDGHSVAVLSGE 352
++Q Y SA + + + ++F T K+ + +E + G
Sbjct: 374 LEQGYCVVPSAMRLLFLLTFLKRFQGKKKIMVFFSTCKSTKFHAELFRYIKFDCLEIRGG 433
Query: 353 LTVEQRIAVLDRFRVGLEKVLITTNVLSRGIDVEQVTLVVNFDMPMDMNRKADCETYLHR 412
+ +R +F +L+ TNV +RG+D V +V +D P + D Y+HR
Sbjct: 434 IDQNKRTPTFLQFIKAETGILLCTNVAARGLDFPHVDWIVQYDPP---DNPTD---YIHR 487
Query: 413 IGRTGR-FGKAGIAINLIDSPQAMEICTDIEA 443
+GRT R G G A+ L+ +PQ ++ ++A
Sbjct: 488 VGRTARGEGAKGKAL-LVLTPQELKFIQYLKA 518
>At5g51280.1 68418.m06357 DEAD-box protein abstrakt, putative
Length = 591
Score = 130 bits (314), Expect = 2e-30
Identities = 111/384 (28%), Positives = 178/384 (46%), Gaps = 32/384 (8%)
Query: 77 VKTFEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMIAQSQSGTGKTAAFVL 136
+K F+ + +L + G P+ IQ LP +LA ++MI + +G+GKT FVL
Sbjct: 145 IKNFKDMKFPRPVLDTLKEKGIVQPTPIQVQGLPVILAG--RDMIGIAFTGSGKTLVFVL 202
Query: 137 AMLSRVDSNKNY--------PQVLCLSPTYELAIQTGEV-----AAKMAKFCPEIKLKYA 183
M+ + P L + P+ ELA QT EV A + P ++
Sbjct: 203 PMIMIALQEEMMMPIAAGEGPIGLIVCPSRELARQTYEVVEQFVAPLVEAGYPPLRSLLC 262
Query: 184 VRGEELPRGSKITD---HILIGTPGKMFDWGVKFGMFDMGKIKVFVLDEADVMINRQGHQ 240
+ G ++ ++ HI++ TPG++ D K M + + LDEAD +++ G +
Sbjct: 263 IGGIDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKM-SLDACRYLTLDEADRLVDL-GFE 320
Query: 241 DQCIRIHKCLPSTCQMMFFSATYGTAVMQFAEIIVSNPIIIRLLRE-EESLDNIKQY-YV 298
D + S Q + FSAT T + FA + P+ + + R +LD I++ YV
Sbjct: 321 DDIREVFDHFKSQRQTLLFSATMPTKIQIFARSALVKPVTVNVGRAGAANLDVIQEVEYV 380
Query: 299 KCKSAEDKYRAICNIYGVITIGQAIIFCHTRKTASWLSEKMSKDGHSVAVLSGELTVEQR 358
K + A+ Y C T +IFC + + E + G + G E R
Sbjct: 381 K-QEAKIVYLLECLQK---TSPPVLIFCENKADVDDIHEYLLLKGVEAVAIHGGKDQEDR 436
Query: 359 IAVLDRFRVGLEKVLITTNVLSRGIDVEQVTLVVNFDMPMDMNRKADCETYLHRIGRTGR 418
+ F+ G + VL+ T+V S+G+D + V+N+DMP A+ E Y+HRIGRTGR
Sbjct: 437 EYAISSFKAGKKDVLVATDVASKGLDFPDIQHVINYDMP------AEIENYVHRIGRTGR 490
Query: 419 FGKAGIAINLIDSPQAMEICTDIE 442
GK GIA I+ Q+ D++
Sbjct: 491 CGKTGIATTFINKNQSETTLLDLK 514
>At4g33370.1 68417.m04744 DEAD-box protein abstrakt, putative RNA
helicase DBP2 - Saccharomyces cerevisiae, PID:g5272
Length = 542
Score = 127 bits (306), Expect = 2e-29
Identities = 113/412 (27%), Positives = 187/412 (45%), Gaps = 35/412 (8%)
Query: 49 MKIIRQGLVESKLDIEIQRKDPNSPLYSVKTFEALHLKPNLLKGVYAMGFNAPSKIQETA 108
M + L+ + I + +D P +K F + LL+ + G P+ IQ
Sbjct: 71 MSTKQMDLIRKQWHITVNGEDIPPP---IKNFMDMKFPSPLLRMLKDKGIMHPTPIQVQG 127
Query: 109 LPTLLADPPQNMIAQSQSGTGKTAAFVLAMLSRVDSNK--------NYPQVLCLSPTYEL 160
LP +L+ ++MI + +G+GKT FVL M+ + P L + P+ EL
Sbjct: 128 LPVVLSG--RDMIGIAFTGSGKTLVFVLPMIILALQEEIMMPIAAGEGPIALVICPSREL 185
Query: 161 AIQTGEV-----AAKMAKFCPEIKLKYAVRGEELPRGSKITD---HILIGTPGKMFDWGV 212
A QT +V A+ + P ++ + G ++ + HI++ TPG++ D
Sbjct: 186 AKQTYDVVEQFVASLVEDGYPRLRSLLCIGGVDMRSQLDVVKKGVHIVVATPGRLKDILA 245
Query: 213 KFGMFDMGKIKVFVLDEADVMINRQGHQDQCIRIHKCLPSTCQMMFFSATYGTAVMQFAE 272
K M + ++ LDEAD +++ G +D + S Q + FSAT + FA
Sbjct: 246 KKKM-SLDACRLLTLDEADRLVDL-GFEDDIRHVFDHFKSQRQTLLFSATMPAKIQIFAT 303
Query: 273 IIVSNPIIIRLLRE-EESLDNIKQY-YVKCKSAEDKYRAICNIYGVITIGQAIIFCHTRK 330
+ P+ + + R +LD I++ YVK + A+ Y C T +IFC +
Sbjct: 304 SALVKPVTVNVGRAGAANLDVIQEVEYVK-QEAKIVYLLECLQK---TTPPVLIFCENKA 359
Query: 331 TASWLSEKMSKDGHSVAVLSGELTVEQRIAVLDRFRVGLEKVLITTNVLSRGIDVEQVTL 390
+ E + G + G E R + F+ G + VL+ T+V S+G+D +
Sbjct: 360 DVDDIHEYLLLKGVEAVAIHGGKDQEDRDYAISLFKAGKKDVLVATDVASKGLDFPDIQH 419
Query: 391 VVNFDMPMDMNRKADCETYLHRIGRTGRFGKAGIAINLIDSPQAMEICTDIE 442
V+N+DMP + E Y+HRIGRTGR GK GIA I+ Q+ D++
Sbjct: 420 VINYDMP------GEIENYVHRIGRTGRCGKTGIATTFINKNQSEITLLDLK 465
>At4g34910.1 68417.m04950 DEAD/DEAH box helicase, putative (RH16)
identical to cDNA DEAD box RNA helicase, RH16 GI:3776006
Length = 626
Score = 125 bits (302), Expect = 5e-29
Identities = 92/332 (27%), Positives = 167/332 (50%), Gaps = 26/332 (7%)
Query: 64 EIQRKDPNSPLYSVKTFEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMIAQ 123
E ++K+ +P K+FE L L L++ + G P+ IQ++A+P +L ++++A+
Sbjct: 36 EEEQKEEEAP----KSFEELGLDSRLIRALTKKGIEKPTLIQQSAIPYILEG--KDVVAR 89
Query: 124 SQSGTGKTAAFVLAMLSR------VDSNKNYPQVLCLSPTYELAIQTGEVAAKMAKFC-- 175
+++G+GKT A++L +L + V K P L P+ EL Q + + + C
Sbjct: 90 AKTGSGKTLAYLLPLLQKLFSADSVSKKKLAPSAFILVPSRELCQQVYTEVSSLIELCRV 149
Query: 176 --PEIKLKYAVRGEELPRGSKITDHILIGTPG---KMFDWGVKFGMFDMGKIKVFVLDEA 230
++L ++ ++ IL+ TP K F GV + + VLDEA
Sbjct: 150 QLKAVQLTSSMSASDMRNALAGLPEILVSTPACIPKCFAAGVLEPTAVSESLSILVLDEA 209
Query: 231 DVMINRQGHQDQCIRIHKCLPSTCQMMFFSATYGTAVMQFAEIIVSNPIIIRLL----RE 286
D++++ G++D + +P CQ + SAT + V + ++I+ NPI++ L +E
Sbjct: 210 DLLLS-YGYEDNLRSVTSIIPRRCQCLLMSATTSSDVEKLKKLILHNPIVLTLTEDNDKE 268
Query: 287 EESLDNIKQYYVKCKSAEDKYRAICNIYGVITIGQAI-IFCHTRKTASWLSEKMSKDGHS 345
E N++Q+++ C SA+DK I + + + + I IF +T L + K G
Sbjct: 269 EAVPSNVQQFWISC-SAQDKLLHILALLKLEVVQKKILIFINTIDMGFRLKLFLEKFGIK 327
Query: 346 VAVLSGELTVEQRIAVLDRFRVGLEKVLITTN 377
A+L+GEL R+ +L++F GL LI T+
Sbjct: 328 SAILNGELPQNSRLHILEQFNAGLFDYLIATD 359
Score = 51.6 bits (118), Expect = 1e-06
Identities = 29/63 (46%), Positives = 40/63 (63%), Gaps = 7/63 (11%)
Query: 381 RGIDVEQVTLVVNFDMPMDMNRKADCETYLHRIGRTGRFGKAGIAINLIDSPQAMEICTD 440
RGID ++V V+NFDMP + Y+HRIGRTGR +G +++LI SP ME D
Sbjct: 398 RGIDFKKVHTVINFDMPQSVTG------YIHRIGRTGRAYSSGSSVSLI-SPDEMEGFED 450
Query: 441 IEA 443
I++
Sbjct: 451 IKS 453
>At1g20920.1 68414.m02619 DEAD box RNA helicase, putative similar to
RNA helicase [Rattus norvegicus] GI:897915; contains
Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 1166
Score = 125 bits (301), Expect = 7e-29
Identities = 107/389 (27%), Positives = 186/389 (47%), Gaps = 31/389 (7%)
Query: 60 KLDIEIQRKDPNSPLYSVKTFEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQN 119
+L++++ KD P +K + L +L + + + P IQ ALP +++ ++
Sbjct: 514 ELELKVHGKDVPRP---IKFWHQTGLTSKILDTMKKLNYEKPMPIQTQALPIIMSG--RD 568
Query: 120 MIAQSQSGTGKTAAFVLAMLSRVDSNK-----NYPQVLCLSPTYELAIQTGEVAAKMAK- 173
I +++G+GKT FVL ML + + P L ++PT EL Q K +K
Sbjct: 569 CIGVAKTGSGKTLGFVLPMLRHIKDQPPVEAGDGPIGLVMAPTRELVQQIHSDIRKFSKP 628
Query: 174 ---FCPEIKLKYAVRGE--ELPRGSKITDHILIGTPGKMFD-WGVKFGMF-DMGKIKVFV 226
C + V + EL RG++I ++ TPG+M D G ++ ++ V
Sbjct: 629 LGIRCVPVYGGSGVAQQISELKRGTEI----VVCTPGRMIDILCTSSGKITNLRRVTFLV 684
Query: 227 LDEADVMINRQGHQDQCIRIHKCLPSTCQMMFFSATYGTAVMQFAEIIVSNPIIIRLLRE 286
+DEAD M + G + Q RI + + Q + FSAT+ V A +++ P+ I++
Sbjct: 685 MDEADRMFD-MGFEPQITRIIQNIRPERQTVLFSATFPRQVETLARKVLNKPVEIQVGGR 743
Query: 287 EESLDNIKQYYVKCKSAEDKYRAICNIYGVITI-GQAIIFCHTRKTASWLSEKMSKDGHS 345
+I Q V+ + D++ + + G + G+ ++F +++ L M K +
Sbjct: 744 SVVNKDITQL-VEVRPESDRFLRLLELLGEWSEKGKILVFVQSQEKCDALYRDMIKSSYP 802
Query: 346 VAVLSGELTVEQRIAVLDRFRVGLEKVLITTNVLSRGIDVEQVTLVVNFDMPMDMNRKAD 405
L G R + + F+ + +LI T+V +RG+DV+++ LVVNFD P
Sbjct: 803 CLSLHGGKDQTDRESTISDFKNDVCNLLIATSVAARGLDVKELELVVNFDAPNHY----- 857
Query: 406 CETYLHRIGRTGRFGKAGIAINLIDSPQA 434
E Y+HR+GRTGR G+ G A+ I A
Sbjct: 858 -EDYVHRVGRTGRAGRKGCAVTFISEDDA 885
>At5g63630.1 68418.m07989 DEAD box RNA helicase, putative strong
similarity to RNA helicase RH25 [Arabidopsis thaliana]
GI:3776023; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain; identical to cDNA DEAD box RNA helicase, RH31
GI:3776030
Length = 522
Score = 122 bits (294), Expect = 5e-28
Identities = 109/389 (28%), Positives = 179/389 (46%), Gaps = 32/389 (8%)
Query: 63 IEIQRKDPNSPLYSVKT-FEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMI 121
IE + + Y KT F+ L P LK + G+ + +QE LP +L ++++
Sbjct: 38 IEADKTRNANDSYLTKTRFDHYPLSPLSLKAIKDAGYETMTVVQEATLPIILKG--KDVL 95
Query: 122 AQSQSGTGKTAAFVLAMLSRV-------DSNKNYPQV-LCLSPTYELAIQTGEVAAKMAK 173
A++++GTGKT AF+L + V NK P + L + PT ELA Q A + K
Sbjct: 96 AKAKTGTGKTVAFLLPSIEVVVKSPPTSPDNKRPPILALVICPTRELANQAATEANTLLK 155
Query: 174 FCPEIKLKYAVRGEELPRGSKITD----HILIGTPGKMFDWGVKFGMFD--MGKIKVFVL 227
+ P I ++ + G L K IL+ TPG++ D F + +KV VL
Sbjct: 156 YHPSIGVQVVIGGTRLGLEQKRMQTNPCQILVATPGRLKDHIENTPGFATRLKGVKVLVL 215
Query: 228 DEADVMINRQGHQDQCIRIHKCLPSTCQMMFFSATYGTAVMQFAEIIVSNPI-IIRLLRE 286
DEAD +++ G + RI +P Q FSAT V Q + + + + E
Sbjct: 216 DEADHLLD-MGFRKDIERIISAVPKERQTFLFSATVPEEVRQICLVALRRDHEFVNCVHE 274
Query: 287 E--ESLDNIKQYYVKCKSAEDKYRAICNIYGVITIG----QAIIFCHTRKTASWLSEKMS 340
E+ ++Q ++ S + + + + +G + I+FC T +++ +
Sbjct: 275 GTIETHQQVRQMHM-IASLDRHFSLLYTLLREHIMGNVDYKVIVFCTTAMVTKLVADLLG 333
Query: 341 KDGHSVAVLSGELTVEQRIAVLDRFRVGLEKVLITTNVLSRGIDVEQVTLVVNFDMPMDM 400
+ +V + R V + FR +L+T++V +RG+D VTLV+ +P D
Sbjct: 334 ELNLNVREIHSRKPQSYRTRVSNEFRKSKGLILVTSDVSARGVDYPDVTLVLQVGLPKDR 393
Query: 401 NRKADCETYLHRIGRTGRFGKAGIAINLI 429
E Y+HR+GRTGR GK G I L+
Sbjct: 394 ------EQYIHRLGRTGRKGKEGEGILLL 416
>At1g31970.1 68414.m03931 DEAD/DEAH box helicase, putative similar
to p68 RNA helicase [Schizosaccharomyces pombe]
GI:173419
Length = 537
Score = 122 bits (293), Expect = 7e-28
Identities = 120/430 (27%), Positives = 198/430 (46%), Gaps = 31/430 (7%)
Query: 11 ELEISNKVAGLGLDKKHNQETDSDDVPDTPNAADTSLLMKIIRQGLVESKLDIEIQRKDP 70
E E+SNK K+ +E++ + D P + L + + +G E + + +
Sbjct: 53 EEELSNKEKKKKR-KREEKESEKNKKKDVP---EKKLEAEDLGEGESEQQKVVVTGKGVE 108
Query: 71 NSPLYSVKTFEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMIAQSQSGTGK 130
+ ++KTF +L N+L F PS IQ P LL +++I +++G+GK
Sbjct: 109 EAKYAALKTFAESNLPENVLD--CCKTFEKPSPIQSHTWPFLLDG--RDLIGIAKTGSGK 164
Query: 131 TAAFVLAMLSRV---------DSNKNYPQVLCLSPTYELAIQTGEVAAKMAKFCPEIKLK 181
T AF + + V S K P L LSPT ELA+Q +V + + C +
Sbjct: 165 TLAFGIPAIMHVLKKNKKIGGGSKKVNPTCLVLSPTRELAVQISDVLREAGEPCGLKSIC 224
Query: 182 YAVRGEELPRGSKITD--HILIGTPGKMFDWGVKFGMFDMGKIKVFVLDEADVMINRQGH 239
+ P+ S I I+IGTPG++ D ++ + + + VLDEAD M++ G
Sbjct: 225 VYGGSSKGPQISAIRSGVDIVIGTPGRLRDL-IESNVLRLSDVSFVVLDEADRMLD-MGF 282
Query: 240 QDQCIRIHKCLPSTCQMMFFSATYGTAVMQFA-EIIVSNPI--IIRLLREEESLDNIKQY 296
++ I QM+ FSAT+ V + A E + NPI II + + D ++
Sbjct: 283 EEPVRFILSNTNKVRQMVMFSATWPLDVHKLAQEFMDPNPIKVIIGSVDLAANHDVMQII 342
Query: 297 YVKCKSAED-KYRAICNIYGVITIGQAIIFCHTRKTASWLSEKMSKDGHSVAVLSGELTV 355
V + A D + A+ Y + ++F + A L + + G + G
Sbjct: 343 EVLDERARDQRLIALLEKYHKSQKNRVLVFALYKVEAERLERFLQQRGWKAVSIHGNKAQ 402
Query: 356 EQRIAVLDRFRVGLEKVLITTNVLSRGIDVEQVTLVVNFDMPMDMNRKADCETYLHRIGR 415
+R L F+ G +L+ T+V +RG+D+ V +V+N+ P+ E Y+HRIGR
Sbjct: 403 SERTRSLSLFKEGSCPLLVATDVAARGLDIPDVEVVINYTFPL------TTEDYVHRIGR 456
Query: 416 TGRFGKAGIA 425
TGR GK G+A
Sbjct: 457 TGRAGKKGVA 466
>At1g63250.1 68414.m07150 DEAD box RNA helicase, putative similar to
RNA helicase (RH25) [Arabidopsis thaliana] GI:3776023;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 798
Score = 118 bits (284), Expect = 8e-27
Identities = 103/386 (26%), Positives = 185/386 (47%), Gaps = 32/386 (8%)
Query: 66 QRKDPNSPLYSVKTFEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMIAQSQ 125
++++P+ +YS K F+ + P LK + A G +++Q+ L L ++ + +++
Sbjct: 316 EKQEPHDSIYSAKRFDESCISPLTLKALSASGILKMTRVQDATLSECLDG--KDALVKAK 373
Query: 126 SGTGKTAAFVL----AMLSRVDSNKNYPQV-----LCLSPTYELAIQTGEVAAKMAKFCP 176
+GTGK+ AF+L +L ++S K +V L L PT ELA Q + KF
Sbjct: 374 TGTGKSMAFLLPAIETVLKAMNSGKGVNKVAPIFALILCPTRELASQIAAEGKALLKFHD 433
Query: 177 EIKLKYAVRGEELPRGSKITD----HILIGTPGKMFDW-GVKFGMFD-MGKIKVFVLDEA 230
I ++ + G + + ILI TPG++ D K G+ + +K+F++DEA
Sbjct: 434 GIGVQTLIGGTRFKLDQQRLESEPCQILIATPGRLLDHIENKSGLTSRLMALKLFIVDEA 493
Query: 231 DVMINRQGHQDQCIRIHKCLPSTCQMMFFSATYGTAVMQFAEIIVSNP---IIIRLLREE 287
D++++ G + +I CLP Q + FSAT V + +++++ I L
Sbjct: 494 DLLLDL-GFRRDVEKIIDCLPRQRQSLLFSATIPKEVRRVSQLVLKRDHSYIDTIGLGCV 552
Query: 288 ESLDNIKQYYVKCKSAEDKYRAICNI----YGVITIGQAIIFCHTRKTASWLSEKMSKDG 343
E+ D ++Q + E + + ++ + I+FC T S + + +
Sbjct: 553 ETHDKVRQSCIVAPH-ESHFHLVPHLLKEHINNTPDYKIIVFCSTGMVTSLMYTLLREMK 611
Query: 344 HSVAVLSGELTVEQRIAVLDRFRVGLEKVLITTNVLSRGIDVEQVTLVVNFDMPMDMNRK 403
+V + R V D F+ +L+T++V +RG++ VTLV+ +P
Sbjct: 612 LNVREIHARKPQLHRTRVSDEFKESNRLILVTSDVSARGMNYPDVTLVIQVGIP------ 665
Query: 404 ADCETYLHRIGRTGRFGKAGIAINLI 429
+D E Y+HR+GRTGR GK G + LI
Sbjct: 666 SDREQYIHRLGRTGREGKGGEGLLLI 691
>At2g07750.1 68415.m01003 DEAD box RNA helicase, putative similar to
RNA helicase RH25 [Arabidopsis thaliana] GI:3776023;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 845
Score = 116 bits (280), Expect = 3e-26
Identities = 103/386 (26%), Positives = 185/386 (47%), Gaps = 32/386 (8%)
Query: 66 QRKDPNSPLYSVKTFEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMIAQSQ 125
++++P+ +YS K F+ + P LK + A G +++Q+ L L ++ + +++
Sbjct: 363 EKQEPHDSIYSAKRFDESCISPLTLKALSASGIVKMTRVQDATLSECLDG--KDALVKAK 420
Query: 126 SGTGKTAAFVL----AMLSRVDSNKNYPQV-----LCLSPTYELAIQTGEVAAKMAKFCP 176
+GTGK+ AF+L +L ++S K +V L L PT ELA Q + K
Sbjct: 421 TGTGKSMAFLLPAIETVLKAMNSGKGVHKVAPIFVLILCPTRELASQIAAEGKALLKNHD 480
Query: 177 EIKLKYAVRGEELPRGSKITD----HILIGTPGKMFDW-GVKFGMFD-MGKIKVFVLDEA 230
I ++ + G + + ILI TPG++ D K G+ + +K+F++DEA
Sbjct: 481 GIGVQTLIGGTRFRLDQQRLESEPCQILIATPGRLLDHIENKSGLTSRLMALKLFIVDEA 540
Query: 231 DVMINRQGHQDQCIRIHKCLPSTCQMMFFSATYGTAVMQFAEIIVSNP---IIIRLLREE 287
D++++ G + +I CLP Q + FSAT V + +++++ I L
Sbjct: 541 DLLLDL-GFKRDVEKIIDCLPRQRQSLLFSATIPKEVRRVSQLVLKRDHSYIDTIGLGCV 599
Query: 288 ESLDNIKQYYVKCKSAEDKYRAICNI----YGVITIGQAIIFCHTRKTASWLSEKMSKDG 343
E+ D +KQ + E + + ++ + + I+FC T S + + +
Sbjct: 600 ETHDKVKQSCIVAPH-ESHFHLVPHLLKEHINNMPDYKIIVFCSTGMVTSLMYTLLREMK 658
Query: 344 HSVAVLSGELTVEQRIAVLDRFRVGLEKVLITTNVLSRGIDVEQVTLVVNFDMPMDMNRK 403
+V + R V D F+ +L+T++V +RG++ VTLV+ +P
Sbjct: 659 LNVREIHARKPQLHRTCVSDEFKESNRLILVTSDVSARGMNYPDVTLVIQVGIP------ 712
Query: 404 ADCETYLHRIGRTGRFGKAGIAINLI 429
+D E Y+HR+GRTGR GK G + LI
Sbjct: 713 SDREQYIHRLGRTGREGKGGKGLLLI 738
>At1g71370.1 68414.m08239 DEAD/DEAH box helicase, putative similar
to ATP-dependent RNA helicase GB:6321111 from (S.
cerevisiae)
Length = 558
Score = 116 bits (278), Expect = 4e-26
Identities = 95/358 (26%), Positives = 170/358 (47%), Gaps = 26/358 (7%)
Query: 85 LKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMIAQSQSGTGKTAAFVLAMLSRVDS 144
L ++++ + GF + +Q +P L + ++++ + +G+GKT AF+L + +
Sbjct: 23 LSEDIIEALDRSGFEVCTPVQAETIPFLCSH--KDVVVDAATGSGKTLAFLLPFIEIIRR 80
Query: 145 NKNYP----QVL--CLSPTYELAIQTGEVAAKMAKFCPEIKLKYAVRGEELPRGSKITD- 197
+ +YP QV+ +SPT EL+ Q +VA P + V G E+ +
Sbjct: 81 SNSYPPKPHQVMGVIISPTRELSAQIHKVAEPFVSTLPNVNSVLLVGGREVEADMNTLEE 140
Query: 198 ---HILIGTPGKMFDWGVKFGMFDMGKIKVFVLDEADVMINRQGHQDQCIRIHKCLPSTC 254
++LIGTPG++ D + D +++ +LDEAD +++ G Q Q I LP
Sbjct: 141 EGANLLIGTPGRLSDMMKRMEFLDFRNLEILILDEADRLLD-MGFQKQVNYIISRLPKQR 199
Query: 255 QMMFFSATYGTAVMQFAEIIVSNPIIIRLLREEESLDNIKQY--YVKCKSAEDKYRAICN 312
+ FSAT AV A+ + N + + E +S + Y Y+KC+ A+ K + +
Sbjct: 200 RTGLFSATQTQAVADLAKAGLRNAMEVISGAESKSKTSSGLYCEYLKCE-ADQKSSQLVH 258
Query: 313 IYGVITIGQAIIFCHTRKTASWLSEKMSK--DGHSVAVLS--GELTVEQRIAVLDRFRVG 368
+ + ++F T + +SK S++ S G++ + R L F
Sbjct: 259 LLIENKNKKLVVFFMTCACVDYWGLVLSKIPTLKSISFFSTHGKMDQKGRDTALASFTEA 318
Query: 369 LEKVLITTNVLSRGIDVEQVTLVVNFDMPMDMNRKADCETYLHRIGRTGRFGKAGIAI 426
VL+ T+V +RG+D+ + VV +D P D + ++HR+GRT R + G AI
Sbjct: 319 SSGVLLCTDVAARGLDIPGIDYVVQYDPPQDP------DVFIHRVGRTARMERQGRAI 370
>At5g62190.1 68418.m07807 DEAD box RNA helicase (PRH75) nearly
identical to RNA helicase [Arabidopsis thaliana]
GI:1488521; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain
Length = 671
Score = 114 bits (274), Expect = 1e-25
Identities = 135/473 (28%), Positives = 217/473 (45%), Gaps = 55/473 (11%)
Query: 13 EISNKVAGLGLDKKHNQETDSDDVPDTPNAADTSLLMKIIRQGLVESKLDIEIQRKDPNS 72
E S K DKK + D+V + ++++ K ++ G VE D+E+ +PN+
Sbjct: 45 EESEKKKSKKKDKKRKASEEEDEVK-SDSSSEKKKSSKKVKLG-VE---DVEVD--NPNA 97
Query: 73 PLYSVKTFEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMIAQSQSGTGKTA 132
V F + L + + A G A IQ + +L +++ ++++G GKT
Sbjct: 98 ----VSKFR---ISAPLREKLKANGIEALFPIQASTFDMVLDGA--DLVGRARTGQGKTL 148
Query: 133 AFVLAML-------SRVDSNKNY---PQVLCLSPTYELAIQTGEV------AAKMAKFCP 176
AFVL +L ++ Y P VL L PT ELA Q + ++ C
Sbjct: 149 AFVLPILESLVNGPAKSKRKMGYGRSPSVLVLLPTRELAKQVAADFDAYGGSLGLSSCCL 208
Query: 177 EIKLKYAVRGEELPRGSKITDHILIGTPGKMFDWGVKFGMFDMGKIKVFVLDEADVMINR 236
Y V+ +L RG I ++GTPG++ D ++ D ++ VLDEAD M+
Sbjct: 209 YGGDSYPVQEGKLKRGVDI----VVGTPGRIKDH-IERQNLDFSYLQFRVLDEADEMLRM 263
Query: 237 QGHQDQCIRIHKCLPST-CQMMFFSATYGTAVMQFAE-IIVSNPIIIRLLREEE--SLDN 292
+D + + K ST Q + FSAT + V + + + I L+ ++ + ++
Sbjct: 264 GFVEDVELILGKVEDSTKVQTLLFSATLPSWVKNISNRFLKRDQKTIDLVGNDKMKASNS 323
Query: 293 IKQYYVKCKSAEDKYRAICNIYGVITIG-QAIIFCHTRKTASWLSEKMSKDGHSVAVLSG 351
++ + C A R I +I + G Q IIF T+ S LS + DG L G
Sbjct: 324 VRHIAIPCNKAA-MARLIPDIISCYSSGGQTIIFAETKVQVSELSGLL--DGSRA--LHG 378
Query: 352 ELTVEQRIAVLDRFRVGLEKVLITTNVLSRGIDVEQVTLVVNFDMPMDMNRKADCETYLH 411
E+ QR L FR G L+ TNV +RG+D+ V L++ + P ++ E Y+H
Sbjct: 379 EIPQSQREVTLAGFRNGKFATLVATNVAARGLDINDVQLIIQCEPPREV------EAYIH 432
Query: 412 RIGRTGRFGKAGIAINLIDSPQAMEICTDIEAHFGKKIQLLDIEDAEEIEKIG 464
R GRTGR G G+A+ L DS ++ + IE G K + L +EI + G
Sbjct: 433 RSGRTGRAGNTGVAVTLYDSRKSS--VSRIEKEAGIKFEHLAAPQPDEIARSG 483
>At3g02065.1 68416.m00171 DEAD/DEAH box helicase family protein
contains Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 368
Score = 112 bits (269), Expect = 5e-25
Identities = 97/338 (28%), Positives = 166/338 (49%), Gaps = 29/338 (8%)
Query: 108 ALPTLLADPPQNMIAQSQSGTGKTAAFVLAMLSRV---------DSNKNYPQVLCLSPTY 158
A+P L ++++A + +G+GKTA+F++ ++SR D +N P + L+PT
Sbjct: 3 AIPAALTG--KSLLASADTGSGKTASFLVPIISRCTTYHSEHPSDQRRN-PLAMVLAPTR 59
Query: 159 ELAIQTGEVAAKMAKFCPEIKLKYAVRGEELP-RGSKITD--HILIGTPGKMFDWGVKFG 215
EL +Q + A + K P K V G+ + + +I ++IGTPG++ D K
Sbjct: 60 ELCVQVEDQAKMLGKGLP-FKTALVVGGDPMSGQLYRIQQGVELIIGTPGRVVDLLSKHT 118
Query: 216 MFDMGKIKVFVLDEADVMINRQGHQDQCIRIHKCLPSTCQMMFFSATYGTAVMQFAEIIV 275
+ ++ I FVLDE D M+ R G +DQ ++I + L S Q++ FSAT V + +
Sbjct: 119 I-ELDNIMTFVLDEVDCMLQR-GFRDQVMQIFQAL-SQPQVLLFSATISREVEKVGGSLA 175
Query: 276 SNPIIIRLLREEESLDNIKQY--YVKCKSAEDKYRAICNIYGVITIGQAIIFCHTRKTAS 333
I++ + + + Q +V K + K I A+++ +R A
Sbjct: 176 KEIILVSIGNPNKPNKAVNQLAIWVDAKQKKQKLFDILRSQNHFK-PPAVVYVSSRVGAD 234
Query: 334 WLSEKMSK-DGHSVAVLSGELTVEQRIAVLDRFRVGLEKVLITTNVLSRGIDVEQVTLVV 392
L+ ++ G + GE +++R V+ F G VL++T VL RG+D+ V V+
Sbjct: 235 LLANAITVVTGVKALSIHGEKPMKERRDVMGSFLGGEVPVLVSTGVLGRGVDLLVVRQVI 294
Query: 393 NFDMPMDMNRKADCETYLHRIGRTGRFGKAGIAINLID 430
FDMP + + Y+H IGR R G+ G AI ++
Sbjct: 295 VFDMP------STIKEYIHVIGRASRMGEKGTAIVFVN 326
>At3g18600.1 68416.m02364 DEAD/DEAH box helicase, putative
non-consensus acceptor splice site AT at exon 2; similar
to DEAD box helicase protein GB:NP_006764 from [Homo
sapiens], contains Pfam profile: PF00270 DEAD/DEAH box
helicase
Length = 568
Score = 110 bits (265), Expect = 2e-24
Identities = 93/374 (24%), Positives = 179/374 (47%), Gaps = 20/374 (5%)
Query: 79 TFEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMIAQSQSGTGKTAAFVLAM 138
TF++L L + MGF ++IQ ++ LL ++++ +++G+GKT AF++
Sbjct: 90 TFDSLDLSEQTSIAIKEMGFQYMTQIQAGSIQPLLEG--KDVLGAARTGSGKTLAFLIPA 147
Query: 139 LSRVDSNKNYPQ----VLCLSPTYELAIQTGEVAAKMAKFCPEIKLKYAVRGEELPRGSK 194
+ + + P+ V+ + PT ELAIQT VA ++ K + +
Sbjct: 148 VELLFKERFSPRNGTGVIVICPTRELAIQTKNVAEELLKHHSQTVSMVIGGNNRRSEAQR 207
Query: 195 ITD--HILIGTPGKMFDWGVKFGMFDMGKIKVFVLDEADVMINRQGHQDQCIRIHKCLPS 252
I +++I TPG++ D F +K V+DEAD ++ +D +I K LP
Sbjct: 208 IASGSNLVIATPGRLLDHLQNTKAFIYKHLKCLVIDEADRILEENFEEDMN-KILKILPK 266
Query: 253 TCQMMFFSATYGTAVMQFAEIIVSNPIIIRLL--REEESLDNIKQYYVKCKSAEDKYRAI 310
T Q FSAT + V A + +++P+ + + R + + + ++Q Y S + I
Sbjct: 267 TRQTALFSATQTSKVKDLARVSLTSPVHVDVDDGRRKVTNEGLEQGYCVVPSKQRLILLI 326
Query: 311 CNIYGVITIGQAIIFCHTRKTASWLSEKMSKDGHSVAVLSGELTVEQRIAVLDRFRVGLE 370
+ + + ++F T K+ + +E M V+ + G + +R F +
Sbjct: 327 SFLKKNLN-KKIMVFFSTCKSVQFHTEIMKISDVDVSDIHGGMDQNRRTKTFFDFMKAKK 385
Query: 371 KVLITTNVLSRGIDVEQVTLVVNFDMPMDMNRKADCETYLHRIGRTGR-FGKAGIAINLI 429
+L+ T+V +RG+D+ V ++ +D P ++ + Y+HR+GRT R G G A+ L+
Sbjct: 386 GILLCTDVAARGLDIPSVDWIIQYDPP---DKPTE---YIHRVGRTARGEGAKGKAL-LV 438
Query: 430 DSPQAMEICTDIEA 443
P+ ++ ++A
Sbjct: 439 LIPEELQFIRYLKA 452
>At5g54910.1 68418.m06839 DEAD/DEAH box helicase, putative
Length = 739
Score = 109 bits (263), Expect = 3e-24
Identities = 100/398 (25%), Positives = 185/398 (46%), Gaps = 22/398 (5%)
Query: 77 VKTFEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMIAQSQSGTGKTAAFVL 136
V+ F L + +G+ + + +Q A+P L ++++ +++G+GKT AFV+
Sbjct: 70 VRKFAQLPISDKTKRGLKDAKYVDMTDVQSAAIPHALCG--RDILGAARTGSGKTLAFVI 127
Query: 137 AMLSRVDSNKNYPQ----VLCLSPTYELAIQTGEVAAKMAKFCPEIKLKYAVRGEELPRG 192
+L ++ + P+ + +SPT ELA QT V K+ KF + + G E
Sbjct: 128 PILEKLHRERWSPEDGVGCIIISPTRELAAQTFGVLNKVGKF-HKFSAGLLIGGREGVDV 186
Query: 193 SKITDH---ILIGTPGKMFDWGVKFGMFDMGKIKVFVLDEADVMINRQGHQDQCIRIHKC 249
K H IL+ PG++ + F+ ++++ +LDEAD +++ + Q I
Sbjct: 187 EKERVHEMNILVCAPGRLLQHMDETPNFECPQLQILILDEADRVLD-SAFKGQLDPIISQ 245
Query: 250 LPSTCQMMFFSATYGTAVMQFAEIIVSNPIIIRLLREEESLDNIK-QYYVKCKSAEDKYR 308
LP Q + FSAT V A + + +P I + E + V E K
Sbjct: 246 LPKHRQTLLFSATQTKKVKDLARLSLRDPEYISVHAEAVTATPTSLMQTVMIVPVEKKLD 305
Query: 309 AICNIYGVITIGQAIIFCHTRKTASWLSEKMSK--DGHSVAVLSGELTVEQRIAVLDRFR 366
+ + + ++F T+K ++ E +K G + L G+++ E+R+ V +F
Sbjct: 306 MLWSFIKTHLNSRILVFLSTKKQVKFVHEAFNKLRPGIPLKSLHGKMSQEKRMGVYSQF- 364
Query: 367 VGLEKVLITTNVLSRGIDVEQ-VTLVVNFDMPMDMNRKADCETYLHRIGRTGRFGKAGIA 425
+ + VL T+VL+RG+D ++ V VV D P D+ +Y+HR+GRT RF G +
Sbjct: 365 IERQSVLFCTDVLARGLDFDKAVDWVVQVDCPEDV------ASYIHRVGRTARFYTQGKS 418
Query: 426 INLIDSPQAMEICTDIEAHFGKKIQLLDIEDAEEIEKI 463
+ + + I EA K+ + + +E+ ++
Sbjct: 419 LLFLTPSEEKMIEKLQEAKVPIKLIKANNQKLQEVSRL 456
>At5g05450.1 68418.m00587 DEAD/DEAH box helicase, putative (RH18)
Length = 593
Score = 105 bits (252), Expect = 6e-23
Identities = 95/367 (25%), Positives = 170/367 (46%), Gaps = 35/367 (9%)
Query: 85 LKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMIAQSQSGTGKTAAFVLAMLSRVDS 144
L ++++ + F + +Q +P L + +++ + +G+GKT AFV+ ++ +
Sbjct: 23 LSGDIIEALNQSDFEFCTPVQAATIPLLCSY--KDVAVDAATGSGKTLAFVVPLVEILRR 80
Query: 145 NKNYP----QVL--CLSPTYELAIQTGEVAAKMAKFCPEIKLKYAVRGEELPRGSKITD- 197
+ ++P QV+ +SPT EL+ Q VA + V G E+ KI +
Sbjct: 81 STSFPPKPHQVMGVIISPTRELSTQIYNVAQPFVSTLANVNSVLLVGGREVKADMKIIEE 140
Query: 198 ---HILIGTPGKMFDWGVKFGMFDMGKIKVFVLDEADVMINRQGHQDQCIRIHKCLPSTC 254
++LIGTPG++ D + + D +++ +LDEAD ++ G Q Q I LP
Sbjct: 141 EGCNVLIGTPGRLSDIMERMEILDFRNLEILILDEADRLLE-MGFQRQVNYIISRLPKQR 199
Query: 255 QMMFFSATYGTAVMQFAEIIVSNPIIIRLLREEES-----LDNIKQ------YYVKCKSA 303
+ FSAT V + A+ + NP+ + + + +S L N K Y++C+ A
Sbjct: 200 RTGLFSATQTEGVEELAKAGLRNPVRVEVRAKSKSESSQQLTNSKTPSGLHLEYMECE-A 258
Query: 304 EDKYRAICNIYGVITIGQAIIFCHTRKTASWLSEKMSK----DGHSVAVLSGELTVEQRI 359
+ K + ++ + + I+F T + + +SK S+ + G++ R
Sbjct: 259 DKKSSQLVDLLIKNSDKKLIVFFMTCASVDYWGLVLSKIPALKSISLIPIHGDMKQNARD 318
Query: 360 AVLDRFRVGLEKVLITTNVLSRGIDVEQVTLVVNFDMPMDMNRKADCETYLHRIGRTGRF 419
L F L+ T+V +RG+D+ + VV +D P D N + HR GRT R
Sbjct: 319 KALASFTKASSGALLCTDVAARGLDIPGIDYVVQYDPPQDPN------MFNHRAGRTARL 372
Query: 420 GKAGIAI 426
G+ G AI
Sbjct: 373 GRQGRAI 379
>At5g63120.1 68418.m07925 ethylene-responsive DEAD box RNA helicase,
putative (RH30) strong similarity to ethylene-responsive
RNA helicase [Lycopersicon esculentum] GI:5669638;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 484
Score = 104 bits (249), Expect = 1e-22
Identities = 84/339 (24%), Positives = 158/339 (46%), Gaps = 21/339 (6%)
Query: 56 LVESKLDIEIQRKDPNSPLYSVKTFEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLAD 115
+ ++ DI ++ +D P+ K F+ + N+L+ + +GF P+ IQ P L
Sbjct: 146 MYRTERDISVEGRDVPKPM---KMFQDANFPDNILEAIAKLGFTEPTPIQAQGWPMALKG 202
Query: 116 PPQNMIAQSQSGTGKTAAFVLAMLSRVDSNKNY-----PQVLCLSPTYELAIQTGEVAAK 170
+++I +++G+GKT A++L L V + P VL L+PT ELA+Q E + K
Sbjct: 203 --RDLIGIAETGSGKTLAYLLPALVHVSAQPRLGQDDGPIVLILAPTRELAVQIQEESRK 260
Query: 171 MAKFCPEIKLKYAVRGEELPRGSKITD-----HILIGTPGKMFDWGVKFGMFDMGKIKVF 225
++ G P+G +I D I+I TPG++ D ++ ++ ++
Sbjct: 261 FG-LRSGVRSTCIYGGA--PKGPQIRDLRRGVEIVIATPGRLIDM-LECQHTNLKRVTYL 316
Query: 226 VLDEADVMINRQGHQDQCIRIHKCLPSTCQMMFFSATYGTAVMQFAEIIVSNPIIIRLLR 285
VLDEAD M++ G + Q +I + Q + +SAT+ V A + +P +
Sbjct: 317 VLDEADRMLD-MGFEPQIRKIVSQIRPDRQTLLWSATWPREVETLARQFLRDPYKAIIGS 375
Query: 286 EEESLDNIKQYYVKCKSAEDKYRAICNIYGVITIGQAI-IFCHTRKTASWLSEKMSKDGH 344
+ + ++ +KY + + + G I IF T++ ++ ++ DG
Sbjct: 376 TDLKANQSINQVIEIVPTPEKYNRLLTLLKQLMDGSKILIFVETKRGCDQVTRQLRMDGW 435
Query: 345 SVAVLSGELTVEQRIAVLDRFRVGLEKVLITTNVLSRGI 383
+ G+ T +R VL F+ G ++ T+V +RG+
Sbjct: 436 PALAIHGDKTQSERDRVLAEFKSGRSPIMTATDVAARGL 474
>At4g09730.1 68417.m01598 DEAD/DEAH box helicase, putative RNA
helicase -Mus musculus,PIR2:I84741
Length = 621
Score = 101 bits (242), Expect = 1e-21
Identities = 96/381 (25%), Positives = 172/381 (45%), Gaps = 32/381 (8%)
Query: 77 VKTFEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMIAQSQSGTGKTAAFVL 136
V+ F+ L L ++ + + P++IQ +P ++ ++++ S +G+GKT A++L
Sbjct: 111 VENFQELGLSEEVMGALQELNIEVPTEIQCIGIPAVMER--KSVVLGSHTGSGKTLAYLL 168
Query: 137 AM--LSRVD-------SNKNYPQVLCLSPTYELAIQTGEVAAKMAKFCPEIKLKYAVRGE 187
+ L R D + P+ + L PT EL+ Q VA ++ + +
Sbjct: 169 PIVQLMREDEANLGKKTKPRRPRTVVLCPTRELSEQVYRVAKSISHHARFRSILVSGGSR 228
Query: 188 ELPRGSKITDHI--LIGTPGKMFDWGVKFGMFDMGKIKVFVLDEADVMINRQ-GHQDQCI 244
P+ + + I ++GTPG++ ++ G G I VLDEAD M +R G + +
Sbjct: 229 IRPQEDSLNNAIDMVVGTPGRILQH-IEEGNMVYGDIAYLVLDEADTMFDRGFGPEIRKF 287
Query: 245 ------RIHKCLPSTCQMMFFSATYGTAVMQFAEIIVSNPIIIRLLREEESLDNIKQYYV 298
R K Q + +AT AV + + +R + + N + ++
Sbjct: 288 LAPLNQRALKTNDQGFQTVLVTATMTMAVQKLVDEEFQGIEHLRTSTLHKKIANARHDFI 347
Query: 299 KCKSAEDKYRAICNIY--GVITIGQAIIFCHTRKTASWLSEKMSKDGHSVAVLSGELTVE 356
K EDK A+ + + + ++FC+T ++ + +S++ S GE+ E
Sbjct: 348 KLSGGEDKLEALLQVLEPSLAKGSKVMVFCNTLNSSRAVDHYLSENQISTVNYHGEVPAE 407
Query: 357 QRIAVLDRFR--VGLEKVLITTNVLSRGIDVEQVTLVVNFDMPMDMNRKADCETYLHRIG 414
QR+ L +F+ G L+ T++ +RG+D++ V VV FD P D YLHR G
Sbjct: 408 QRVENLKKFKDEEGDCPTLVCTDLAARGLDLD-VDHVVMFDFP---KNSID---YLHRTG 460
Query: 415 RTGRFGKAGIAINLIDSPQAM 435
RT R G G +L+ M
Sbjct: 461 RTARMGAKGKVTSLVSRKDQM 481
>At3g06980.1 68416.m00829 DEAD/DEAH box helicase, putative contains
Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 781
Score = 81.4 bits (192), Expect = 1e-15
Identities = 87/377 (23%), Positives = 162/377 (42%), Gaps = 43/377 (11%)
Query: 75 YSVKTFEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMIAQSQSGTGKTAAF 134
+S KTF + +++K + F+ P+ IQ A ++ ++ I QSG+GKT A+
Sbjct: 371 FSRKTFAEIGCSEDMMKALKEQNFDRPAHIQAMAFSPVIDG--KSCIIADQSGSGKTLAY 428
Query: 135 VLAMLSRV---------DSNKNYPQVLCLSPTYELAIQTGEVAAKMAKFCPEIKLKYAVR 185
++ ++ R+ S+ P+V+ L PT ELA Q ++K +
Sbjct: 429 LVPVIQRLREEELQGHSKSSPGCPRVIVLVPTAELASQVLANCRSISKSGVPFRSMVVTG 488
Query: 186 G----EELPRGSKITDHILIGTPGKMFDWGVKFGMFDMGKIKVFVLDEADVMINRQGHQD 241
G +L + D +LI TPG+ F + + G+ + ++ +LDE D++ +
Sbjct: 489 GFRQRTQLENLEQGVD-VLIATPGR-FTYLMNEGILGLSNLRCAILDEVDILFGDDEFEA 546
Query: 242 QCIRIHKCLPSTCQMMFFSATYGTAVMQFAEIIVSNPIIIRLLREEESLDNIKQYYVKCK 301
+ P T Q +F +AT + + + ++ R + ++++ V C
Sbjct: 547 ALQNLINSSPVTAQYLFVTATLPLEIYNKLVEVFPDCEVVMGPRVHRVSNALEEFLVDCS 606
Query: 302 -----------SAEDKYRAICNIYGVITIGQAIIFCHTRKTASWLS---EKMSKDGHSVA 347
+ ++K A+ I + + IIFC+ +T + +++ + +
Sbjct: 607 GDDNAEKTPETAFQNKKTALLQIMEENPVSKTIIFCNKIETCRKVENIFKRVDRKERQLH 666
Query: 348 VLS--GELTVEQRIAVLDRFRVGLEK----VLITTNVLSRGIDVEQVTLVVNFDMPMDMN 401
VL L+ E R+ + F + L+ T+ SRGID V VV FD P D +
Sbjct: 667 VLPFHAALSQESRLTNMQEFTSSQPEENSLFLVCTDRASRGIDFSGVDHVVLFDFPRDPS 726
Query: 402 RKADCETYLHRIGRTGR 418
Y+ R+GRT R
Sbjct: 727 E------YVRRVGRTAR 737
>At1g71280.1 68414.m08226 DEAD/DEAH box helicase, putative contains
Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 465
Score = 75.4 bits (177), Expect = 8e-14
Identities = 81/320 (25%), Positives = 146/320 (45%), Gaps = 42/320 (13%)
Query: 85 LKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMIAQSQSGTGKTAAFVLAMLSRVDS 144
L ++++ + GF + +Q +P L + ++++ + +G+GKT AF+L + +
Sbjct: 24 LSEDIIEALDRSGFEVCTPVQAETIPFLCSH--KDVVVDAATGSGKTLAFLLPFIEIIRR 81
Query: 145 NKNYP----QVL--CLSPTYELAIQTGEVA-AKMAKF--CPEIKLKYAVRGEELPRGSKI 195
+ +YP QV+ +SPT EL+ Q +VA A F C E++ EE G+
Sbjct: 82 SNSYPPKPHQVMGVIISPTRELSAQIHKVARAVRLDFAKCREVEADMNTLEEE---GA-- 136
Query: 196 TDHILIGTPGKMFDWGVKFGMFDMGKIKVFVLDEADVMINRQGHQDQCIRIHKCLPSTCQ 255
++LIGTPG++ D + D +++ +LDEAD +++ G Q Q I LP +
Sbjct: 137 --NLLIGTPGRLSDMMKRMEFLDFRNLEILILDEADRLLD-MGFQKQVNYIISRLPKQRR 193
Query: 256 MMFFSATYGTAVMQFAEIIVSNPIIIRLLREEESLDNIKQYYVKCKSAEDKYRAICNIYG 315
FSAT AV A+ + NP Y+KC+ A+ K + ++
Sbjct: 194 TGLFSATQTQAVADLAKAGLRNP------------------YLKCE-ADQKSSQLVHLLI 234
Query: 316 VITIGQAIIFCHTRKTASW----LSEKMSKDGHSVAVLSGELTVEQRIAVLDRFRVGLEK 371
+ ++F T + +S+ S S G++ + R L F
Sbjct: 235 ENKNKKLVVFFMTCACVDYWGLVISKIPSLKSISFFPTHGKMDQKGRDTALASFTEASSG 294
Query: 372 VLITTNVLSRGIDVEQVTLV 391
VL+ T+V +RG+D+ + +
Sbjct: 295 VLLCTDVAARGLDIPGIVYI 314
>At3g16840.1 68416.m02150 DEAD/DEAH box helicase, putative (RH13)
similar to RNA helicase GB:CAA09204 from [Arabidopsis
thaliana]; identical to cDNA DEAD box RNA helicase, RH13
GI:3776002
Length = 832
Score = 73.3 bits (172), Expect = 3e-13
Identities = 47/181 (25%), Positives = 88/181 (48%), Gaps = 7/181 (3%)
Query: 277 NPIIIRLLREEESLDNIKQYYVKCKSAEDKYRAICNIYGVITIGQAIIFCHTRKTASWLS 336
N II L I++ ++KC+ E K + I V G+ I+FC + +S
Sbjct: 461 NVAIIDLTTTSILAPKIEESFIKCEEKE-KDAYLYYILSVHGQGRTIVFCTSVTDLRHIS 519
Query: 337 EKMSKDGHSVAVLSGELTVEQRIAVLDRFRVGLEKVLITTNVLSRGIDVEQVTLVVNFDM 396
+ G V L E+ R+ +DRFR +LI T++++RGID++ V ++++ +
Sbjct: 520 GLLKILGLDVCTLFSEMKQRARLKSIDRFRASENGILIATDLVARGIDIKNVRTIIHYKL 579
Query: 397 PMDMNRKADCETYLHRIGRTGRFGKAGIAINLIDSPQAMEICTDIEAHFGKKIQLLDIED 456
P E Y+HR GRT R G +I LI+ + + T ++ + +++ +++
Sbjct: 580 P------HSAEVYVHRCGRTARAFADGCSIALIEPNETSKFYTLCKSFSMESVKIFPLDN 633
Query: 457 A 457
+
Sbjct: 634 S 634
Score = 65.3 bits (152), Expect = 8e-11
Identities = 60/200 (30%), Positives = 99/200 (49%), Gaps = 30/200 (15%)
Query: 80 FEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMIAQSQSGTGKTAAFVLAML 139
+ ++ L P L+K +Y + F P+KIQ+ + A +++I +++G+GKT AF L +L
Sbjct: 192 WSSMRLHPLLMKSIYRLDFKEPTKIQKACF-NVAAYQGKDVIGAAETGSGKTLAFGLPIL 250
Query: 140 SRV----------------DSNK----NYPQVLCLSPTYELAIQTGEVAAKMAKFCPEIK 179
R+ ++ K Y + L ++PT ELA+Q E AK +K
Sbjct: 251 QRLLDEREKVGKLYALKGEEAQKYAADGYLRALIITPTRELALQVTEHLENAAKNL-SVK 309
Query: 180 LKYAVRG---EELPRGSKITDHILIGTPGKMFDW---GVKFGMFDMGKIKVFVLDEADVM 233
+ V G E+ R K I++ TPG++++ G K + ++ + FVLDEAD M
Sbjct: 310 VVPIVGGMFSEKQERRLKEKPEIVVATPGRLWELMSAGEKH-LVELHSLSFFVLDEADRM 368
Query: 234 INRQGHQDQCIRIHKCLPST 253
+ R GH + I LP T
Sbjct: 369 VER-GHFRELQSILDLLPVT 387
>At1g12770.1 68414.m01482 DEAD/DEAH box helicase family protein /
pentatricopeptide (PPR) repeat-containing protein
contains Pfam profiles: PF00271 helicase conserved
C-terminal domain, PF01535 PPR repeat, PF00270:
DEAD/DEAH box helicase
Length = 1145
Score = 67.7 bits (158), Expect = 2e-11
Identities = 47/166 (28%), Positives = 73/166 (43%), Gaps = 8/166 (4%)
Query: 293 IKQYYVKCKSAEDKYRAICNIYGVITIGQAIIFCHTRKTASWLSEKMSKDGHSVAVLSGE 352
+K YY K + K + + I F + + + K+ G + A + G+
Sbjct: 382 LKHYYCISKH-QHKVDTLRRCVHALDAQSVIAFMNHSRQLKDVVYKLEARGMNSAEMHGD 440
Query: 353 LTVEQRIAVLDRFRVGLEKVLITTNVLSRGIDVEQVTLVVNFDMPMDMNRKADCETYLHR 412
L R VL +F+ G KVL+T + +RG+DV + LVVN ++P D Y HR
Sbjct: 441 LGKLGRSTVLKKFKNGEIKVLVTNELSARGLDVAECDLVVNLELP------TDAVHYAHR 494
Query: 413 IGRTGRFGKAGIAINLIDSPQAMEICTDIEAHFGKKIQLLDIEDAE 458
GRTGR G+ G + + + Q I +E G + D E
Sbjct: 495 AGRTGRLGRKGTVVTVCEESQVF-IVKKMEKQLGLPFLYCEFVDGE 539
Score = 63.7 bits (148), Expect = 2e-10
Identities = 50/187 (26%), Positives = 88/187 (47%), Gaps = 20/187 (10%)
Query: 72 SPLYSVKTFEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMIAQSQSGTGKT 131
SPL+S K+FE L L +LL + GF+ P+ +Q A+P ++ + + QS +G+GKT
Sbjct: 104 SPLFSAKSFEELGLPDSLLDSLEREGFSVPTDVQSAAVPAIIKG--HDAVIQSYTGSGKT 161
Query: 132 AAFVLAMLSRV-------------DSNKNYPQVLCLSPTYELAIQTGEVAAKMAKFCPEI 178
A++L +LS + + + Q + ++P+ EL +Q K+
Sbjct: 162 LAYLLPILSEIGPLAEKSRSSHSENDKRTEIQAMIVAPSRELGMQIVREVEKLLGPVHRR 221
Query: 179 KLKYAVRGEELPRG----SKITDHILIGTPGKMFDWGVKFGMFDMGKIKVFVLDEADVMI 234
++ V G R K I++GTPG++ + K G + VLDE D ++
Sbjct: 222 MVQQLVGGANRMRQEEALKKNKPAIVVGTPGRIAEIS-KGGKLHTHGCRFLVLDEVDELL 280
Query: 235 NRQGHQD 241
+ +D
Sbjct: 281 SFNFRED 287
>At3g09620.1 68416.m01141 DEAD/DEAH box helicase, putative similar
to RNA helicase GB:A57514 GI:897915 from [Rattus
norvegicus]; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain
Length = 989
Score = 66.5 bits (155), Expect = 4e-11
Identities = 70/285 (24%), Positives = 134/285 (47%), Gaps = 25/285 (8%)
Query: 60 KLDIEIQRKDPNSPLYSVKTFEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQN 119
+L++++ KD P ++ + L +L + + + P IQ ALP +++ ++
Sbjct: 381 ELELKVHGKDVPRP---IQFWHQTGLTSKILDTLKKLNYEKPMPIQAQALPIIMSG--RD 435
Query: 120 MIAQSQSGTGKTAAFVLAMLSRVDSNK-----NYPQVLCLSPTYELAIQTGEVAAKMAKF 174
I +++G+GKT FVL ML + + P L ++PT EL Q K +K
Sbjct: 436 CIGVAKTGSGKTLGFVLPMLRHIKDQPPVEAGDGPIGLVMAPTRELVQQIYSDIRKFSKA 495
Query: 175 CPEIKLK-YAVRG-----EELPRGSKITDHILIGTPGKMFD-WGVKFG-MFDMGKIKVFV 226
I + Y G EL RG++ I++ TPG+M D G + ++ ++ V
Sbjct: 496 LGIICVPVYGGSGVAQQISELKRGTE----IVVCTPGRMIDILCTSSGKITNLRRVTYLV 551
Query: 227 LDEADVMINRQGHQDQCIRIHKCLPSTCQMMFFSATYGTAVMQFAEIIVSNPIIIRLLRE 286
+DEAD M + G + Q RI + + Q + FSAT+ V A +++ P+ I++
Sbjct: 552 MDEADRMFD-MGFEPQITRIVQNIRPDRQTVLFSATFPRQVETLARKVLNKPVEIQVGGR 610
Query: 287 EESLDNIKQYYVKCKSAEDKYRAICNIYGV-ITIGQAIIFCHTRK 330
+I Q V+ + +++ + + G G+ ++F +++
Sbjct: 611 SVVNKDITQ-LVEIRPESERFSRLLELLGEWYEKGKVLVFVRSQE 654
Score = 59.3 bits (137), Expect = 5e-09
Identities = 30/70 (42%), Positives = 43/70 (61%), Gaps = 6/70 (8%)
Query: 365 FRVGLEKVLITTNVLSRGIDVEQVTLVVNFDMPMDMNRKADCETYLHRIGRTGRFGKAGI 424
F+ + +LI T+V +RG+DV+++ LVVNFD P E Y+HR+GRTGR G+ G
Sbjct: 660 FKSDVCNLLIATSVAARGLDVKELELVVNFDAPNHY------EDYVHRVGRTGRAGRKGC 713
Query: 425 AINLIDSPQA 434
A+ I A
Sbjct: 714 AVTFISEDDA 723
>At4g15850.1 68417.m02410 DEAD/DEAH box helicase, putative similar
to D-E-A-D box protein [Drosophila melanogaster]
GI:499204; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 512
Score = 58.8 bits (136), Expect = 7e-09
Identities = 33/82 (40%), Positives = 48/82 (58%), Gaps = 6/82 (7%)
Query: 350 SGELTVEQRIAVLDRFRVGLEKVLITTNVLSRGIDVEQVTLVVNFDMPMDMNRKADCETY 409
SG L R L FR G +VL+ ++ L+RG+DV+ VT V+N+DMP +T+
Sbjct: 359 SGGLNQSLRSKELKAFRKGDIQVLVASDALTRGMDVKGVTNVINYDMP------PFAKTF 412
Query: 410 LHRIGRTGRFGKAGIAINLIDS 431
+HR GRT R G+AG L+ +
Sbjct: 413 IHRAGRTARAGQAGRCFTLLSN 434
>At2g40700.1 68415.m05021 DEAD/DEAH box helicase, putative (RH17)
identical to GB:CAA09207, contains a DEAD/DEAH box
family ATP-dependent helicas signature; identical to
cDNA DEAD box RNA helicase, RH17 GI:3776008
Length = 609
Score = 58.4 bits (135), Expect = 9e-09
Identities = 58/216 (26%), Positives = 102/216 (47%), Gaps = 18/216 (8%)
Query: 49 MKIIRQGLVESKLDIEIQRKDPNSPLYSVKTFEALHLKPNLLKGVYA-MGFNAPSKIQET 107
MK +Q E+K + + K S L++ +F +L L L + MGF AP+ +Q
Sbjct: 1 MKRAQQSARETKQEAKDASK-AKSGLFASCSFSSLGLDTKLSDQLKERMGFEAPTLVQAQ 59
Query: 108 ALPTLLADPPQNMIAQSQSGTGKTAAFVLAMLSRVDSNKNYPQV--------LCLSPTYE 159
A+P +L+ ++++ + +GTGKT A++ ++ + + P+V L + PT E
Sbjct: 60 AIPVILSG--RDVLVNAPTGTGKTIAYLAPLIHHLQGHS--PKVDRSHGTFALVIVPTRE 115
Query: 160 LAIQTGEVAAKMAKFCPEIKLKYAVRGEELPRGS---KITDHILIGTPGKMFDWGVKFGM 216
L +Q E K+ I Y + GE+ + + ILI TPG++ D
Sbjct: 116 LCLQVYETLEKLLHRFHWIVPGYVMGGEKKAKEKARLRKGISILIATPGRLLDHLKNTAS 175
Query: 217 FDMGKIKVFVLDEADVMINRQGHQDQCIRIHKCLPS 252
F ++ + DEAD ++ G+ + +I K L S
Sbjct: 176 FVHKNLRWVIFDEADSIL-ELGYGKEIEQIIKLLGS 210
Score = 54.0 bits (124), Expect = 2e-07
Identities = 28/96 (29%), Positives = 51/96 (53%), Gaps = 7/96 (7%)
Query: 349 LSGELTVEQRIAVLDRFRVGLEKVLITTNVLSRGIDVEQVTLVVNFDMPMDMNRKADCET 408
L G + E R + F+ + VL++T+V +RG+D +V ++ +D P +
Sbjct: 379 LHGSMEQEDRRSAFGTFKTEKQAVLLSTDVAARGLDFPKVRCIIQYDCP------GEATE 432
Query: 409 YLHRIGRTGRFGKAGIAINLIDSPQAMEICTDIEAH 444
Y+HR+GRT R G+ G A+ L P ++ +++ H
Sbjct: 433 YVHRVGRTARIGEKGEAL-LFLQPIEIDYLKELKKH 467
>At5g19210.2 68418.m02287 DEAD/DEAH box helicase, putative
EUKARYOTIC INITIATION FACTOR 4A-II (EIF-4A-II), Homo
sapiens, SWISSPROT:IF42_HUMAN
Length = 472
Score = 54.0 bits (124), Expect = 2e-07
Identities = 37/135 (27%), Positives = 69/135 (51%), Gaps = 3/135 (2%)
Query: 39 TPNAADTSLLMKIIR-QGLVESKLDIEIQRKDPNSPLYSVKTFEALHLKPNLLKGVYAMG 97
T A +S +II Q + E+ +IE + +++ + ++L + +G
Sbjct: 36 TRRALKSSPSSRIINLQAVAETSSEIESNSVTETTVPLTLRQICQGFVPEHILHRMEEIG 95
Query: 98 FNAPSKIQETALPTLLADPPQNMIAQSQSGTGKTAAFVLAMLSRVDSNKNYPQVLCLSPT 157
F P+ IQ ALPTL ++ I +Q+G+GKT ++L + S ++ ++ Q + + PT
Sbjct: 96 FVFPTDIQREALPTLFTG--RDCILHAQTGSGKTLTYLLLIFSLINPQRSSVQAVIVVPT 153
Query: 158 YELAIQTGEVAAKMA 172
EL +Q +VA +A
Sbjct: 154 RELGMQVTKVARMLA 168
Score = 53.2 bits (122), Expect = 4e-07
Identities = 32/96 (33%), Positives = 49/96 (51%), Gaps = 9/96 (9%)
Query: 341 KDGHSVAVLSGELTVEQRIAVLDRFRVGLEKVLITTNVLSRGIDVEQVTLVVNFDMPMDM 400
K + +L G++ R A L R G +L++T++ +RGID+ + T + NFD+P +
Sbjct: 363 KGSLEILLLEGDMNFNSRAASLTEIRQGGGFLLVSTDIAARGIDLPETTHIFNFDLPQTV 422
Query: 401 NRKADCETYLHRIGRTGR---FGKAGIAINLIDSPQ 433
YLHR GR GR + I NLI S +
Sbjct: 423 T------DYLHRAGRAGRKPFSDRKCIVANLITSEE 452
>At5g19210.1 68418.m02288 DEAD/DEAH box helicase, putative
EUKARYOTIC INITIATION FACTOR 4A-II (EIF-4A-II), Homo
sapiens, SWISSPROT:IF42_HUMAN
Length = 315
Score = 53.2 bits (122), Expect = 4e-07
Identities = 32/96 (33%), Positives = 49/96 (51%), Gaps = 9/96 (9%)
Query: 341 KDGHSVAVLSGELTVEQRIAVLDRFRVGLEKVLITTNVLSRGIDVEQVTLVVNFDMPMDM 400
K + +L G++ R A L R G +L++T++ +RGID+ + T + NFD+P +
Sbjct: 206 KGSLEILLLEGDMNFNSRAASLTEIRQGGGFLLVSTDIAARGIDLPETTHIFNFDLPQTV 265
Query: 401 NRKADCETYLHRIGRTGR---FGKAGIAINLIDSPQ 433
YLHR GR GR + I NLI S +
Sbjct: 266 T------DYLHRAGRAGRKPFSDRKCIVANLITSEE 295
>At4g35740.1 68417.m05072 DNA helicase (RECQl3) identical to DNA
Helicase [Arabidopsis thaliana] GI:11121447; contains
Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 713
Score = 50.0 bits (114), Expect = 3e-06
Identities = 68/299 (22%), Positives = 124/299 (41%), Gaps = 15/299 (5%)
Query: 126 SGTGKTAAFVLAMLSRVDSNKNYPQVLCLSPTYELAIQTGEVAAKMAKFCPEIKLKYAVR 185
+G GK+ + + L++ ++ L +A++ +AA+ +K +
Sbjct: 60 TGGGKSICYQIPALAKPGIVLVVSPLIALMENQVMALKEKGIAAEYLSSTQATHVKNKIH 119
Query: 186 GEELPRGSKITDHILIGTPGKMFDWGVKFGMFDM---GKIKVFVLDEADVMINRQGHQDQ 242
E+L G K + +L TP + G + + G + + +DEA I+ GH +
Sbjct: 120 -EDLDSG-KPSVRLLYVTPELIATKGFMLKLRKLHSRGLLNLIAIDEAHC-ISSWGHDFR 176
Query: 243 -CIRIHKCLPSTCQMMFFSATYGTAVMQFAEIIVSNPIIIRLLREEESLDNIKQYY-VKC 300
R L + + A TA + + ++ + + L + S + +Y V+
Sbjct: 177 PSYRQLSTLRDSLADVPVLALTATAAPKVQKDVIDSLNLRNPLVLKSSFNRPNIFYEVRY 236
Query: 301 KSAEDK-YRAICNIYGVITIGQAIIFCHTRKTASWLSEKMSKDGHSVAVLSGELTVEQRI 359
K D Y + N+ AII+C R T LS +S G S A L + R
Sbjct: 237 KDLLDNAYTDLGNLLKSCGNICAIIYCLERTTCDDLSVHLSSIGISSAAYHAGLNSKMRS 296
Query: 360 AVLDRFRVGLEKVLITTNVLSRGIDVEQVTLVVNFDMPMDMNRKADCETYLHRIGRTGR 418
VLD + +++++ T GID + V +V +F++P M E++ GR GR
Sbjct: 297 TVLDDWLSSKKQIIVATVAFGMGIDKKDVRMVCHFNIPKSM------ESFYQESGRAGR 349
>At4g35740.2 68417.m05073 DNA helicase (RECQl3) identical to DNA
Helicase [Arabidopsis thaliana] GI:11121447; contains
Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 620
Score = 49.2 bits (112), Expect = 6e-06
Identities = 31/97 (31%), Positives = 47/97 (48%), Gaps = 6/97 (6%)
Query: 322 AIIFCHTRKTASWLSEKMSKDGHSVAVLSGELTVEQRIAVLDRFRVGLEKVLITTNVLSR 381
AII+C R T LS +S G S A L + R VLD + +++++ T
Sbjct: 166 AIIYCLERTTCDDLSVHLSSIGISSAAYHAGLNSKMRSTVLDDWLSSKKQIIVATVAFGM 225
Query: 382 GIDVEQVTLVVNFDMPMDMNRKADCETYLHRIGRTGR 418
GID + V +V +F++P M E++ GR GR
Sbjct: 226 GIDKKDVRMVCHFNIPKSM------ESFYQESGRAGR 256
>At1g10930.1 68414.m01255 DNA helicase (RECQl4A) nearly identical to
DNA Helicase [Arabidopsis thaliana] GI:11121449
Length = 1188
Score = 43.2 bits (97), Expect = 4e-04
Identities = 26/99 (26%), Positives = 44/99 (44%), Gaps = 6/99 (6%)
Query: 323 IIFCHTRKTASWLSEKMSKDGHSVAVLSGELTVEQRIAVLDRFRVGLEKVLITTNVLSRG 382
II+C +R +SE++ + GH A G + EQR + ++ ++ T G
Sbjct: 677 IIYCLSRMDCEKVSERLQEFGHKAAFYHGSMEPEQRAFIQTQWSKDEINIICATVAFGMG 736
Query: 383 IDVEQVTLVVNFDMPMDMNRKADCETYLHRIGRTGRFGK 421
I+ V V++ +P + E Y GR GR G+
Sbjct: 737 INKPDVRFVIHHSLPKSI------EGYHQECGRAGRDGQ 769
>At1g35530.1 68414.m04411 DEAD/DEAH box helicase, putative low
similarity to RNA helicase/RNAseIII CAF protein
[Arabidopsis thaliana] GI:6102610; contains Pfam
profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 1324
Score = 41.9 bits (94), Expect = 9e-04
Identities = 29/91 (31%), Positives = 44/91 (48%), Gaps = 6/91 (6%)
Query: 360 AVLDRFRVGLEKVLITTNVLSRGIDVEQVTLVVNFDMPMDMNRKADCETYLHRIGRTGRF 419
AVL++FR G V++ T++ G+D+ +V LV+ FD + R + R+GRTGR
Sbjct: 518 AVLEKFRAGGFNVIVATSIGEEGLDIMEVDLVICFDANVSPLR------MIQRMGRTGRK 571
Query: 420 GKAGIAINLIDSPQAMEICTDIEAHFGKKIQ 450
I Q +E GKK+Q
Sbjct: 572 NNGRIPHVYKPEVQHVEFSIKQFVPRGKKLQ 602
>At1g27880.1 68414.m03416 ATP-dependent DNA helicase, putative
similar to SP|O94761 ATP-dependent DNA helicase Q4
(RecQ4) {Homo sapiens}; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 911
Score = 39.1 bits (87), Expect = 0.006
Identities = 24/103 (23%), Positives = 45/103 (43%), Gaps = 6/103 (5%)
Query: 319 IGQAIIFCHTRKTASWLSEKMSKDGHSVAVLSGELTVEQRIAVLDRFRVGLEKVLITTNV 378
I I++C + +S+ + + + L + R+ + + F +V++ T
Sbjct: 486 IRSIIVYCKFQYETDMISKYLRDNNINAKGYHSGLPAKDRVRIQESFCSNKIRVVVATVA 545
Query: 379 LSRGIDVEQVTLVVNFDMPMDMNRKADCETYLHRIGRTGRFGK 421
G+D V V++F +P M E Y+ IGR GR G+
Sbjct: 546 FGMGLDKGDVGAVIHFSVPGSM------EEYVQEIGRAGRDGR 582
>At1g59990.1 68414.m06758 DEAD/DEAH box helicase, putative (RH22)
similar to RNA helicase GI:3776015 from [Arabidopsis
thaliana]; contains Pfam profiles PF00271: Helicase
conserved C-terminal domain, PF00270: DEAD/DEAH box
helicase; matches EST OAO811-2
Length = 581
Score = 38.3 bits (85), Expect = 0.011
Identities = 27/108 (25%), Positives = 50/108 (46%), Gaps = 7/108 (6%)
Query: 321 QAIIFCHTRKTASWLSEKMSKDGHSVAVLSGELTVEQRIAVLDRFRVGLEKVLITTNVLS 380
+ ++F +T + +++ + K +++R +L FR V + T+ +
Sbjct: 426 RTMVFANTVEAVEAVADILEKASIQCYRYHKNHKLDERANILADFRE-TGGVFVCTDAAA 484
Query: 381 RGIDVEQVTLVVNFDMPMDMNRKADCETYLHRIGRTGRFGKAGIAINL 428
RG+DV V+ V+ D + +LHRIGRT R G+ G +L
Sbjct: 485 RGVDVPNVSHVIQADFA------SSAVDFLHRIGRTARAGQYGTVTSL 526
>At3g03300.1 68416.m00327 DEAD/DEAH box helicase carpel
factory-related similar to RNA helicase GB:AAF03534
Length = 1317
Score = 37.9 bits (84), Expect = 0.014
Identities = 14/42 (33%), Positives = 28/42 (66%)
Query: 354 TVEQRIAVLDRFRVGLEKVLITTNVLSRGIDVEQVTLVVNFD 395
T +++ +++ FR GL +++ T++L G+DV+ LV+ FD
Sbjct: 431 TRKKQNEIVEDFRRGLVNIIVATSILEEGLDVQSCNLVIRFD 472
>At1g12700.1 68414.m01473 helicase domain-containing protein /
pentatricopeptide (PPR) repeat-containing protein
contains Pfam profiles PF01535: PPR repeat, PF00271:
Helicase conserved C-terminal domain
Length = 828
Score = 37.5 bits (83), Expect = 0.019
Identities = 24/79 (30%), Positives = 43/79 (54%), Gaps = 6/79 (7%)
Query: 343 GHSVAVLSGELTVEQRIAVLDRFRVGLEKVLITTNVLSRGIDVEQVTLVVNFDMPMDMNR 402
G + A L+ +L +R +VL +F+ +VL+T +L+ G++ + L+V+ ++P
Sbjct: 639 GMNSAELNRDLRKLRRSSVLKKFKNRDVRVLVTNELLTWGLEDAECDLMVDLELP----- 693
Query: 403 KADCETYLHRIGRTGRFGK 421
D Y HR GR R G+
Sbjct: 694 -TDAVHYAHRAGRMRRPGR 711
>At4g32700.1 68417.m04655 DNA-directed DNA polymerase family protein
similar to DNA helicase HEL308 [Homo sapiens]
GI:19110782; contains Pfam profiles PF00271: Helicase
conserved C-terminal domain, PF00176: SNF2 family
N-terminal domain, PF00476: DNA polymerase family A
Length = 1548
Score = 36.7 bits (81), Expect = 0.033
Identities = 26/75 (34%), Positives = 36/75 (48%), Gaps = 2/75 (2%)
Query: 346 VAVLSGELTVEQRIAVLDRFRVGLEKVLITTNVLSRGIDVEQVTLVVNFDMPMDMNRKAD 405
VA LTVE+R V +R GL +VL T+ L+ G+++ ++ F PM D
Sbjct: 296 VAYHHAGLTVEEREIVETCYRKGLVRVLTATSTLAAGVNLPARRVI--FRQPMIGRDFID 353
Query: 406 CETYLHRIGRTGRFG 420
Y GR GR G
Sbjct: 354 GTRYKQMSGRAGRTG 368
>At2g06990.1 68415.m00800 HUA enhancer 2 (HEN2) / DExH-box RNA
helicase, putative nearly identical to HUA enhancer 2
[Arabidopsis thaliana] GI:16024936
Length = 995
Score = 36.7 bits (81), Expect = 0.033
Identities = 35/107 (32%), Positives = 49/107 (45%), Gaps = 7/107 (6%)
Query: 350 SGELTVEQRIAVLDRFRVGLEKVLITTNVLSRGIDVEQVTLVVNFDMPMD--MNRKADCE 407
SG L V + + L F+ GL K L T + G+++ T+V D +R
Sbjct: 407 SGLLPVIKELVEL-LFQEGLVKALFATETFAMGLNMPAKTVVFTAVKKWDGDSHRYIGSG 465
Query: 408 TYLHRIGRTGRFGK--AGIAINLIDSPQAMEICTDIEAHFGKKIQLL 452
Y+ GR GR GK GI I +ID + ME+ T + GK LL
Sbjct: 466 EYIQMSGRAGRRGKDERGICIIMID--EQMEMNTLRDMMLGKPAPLL 510
>At1g31360.1 68414.m03838 DNA helicase, putative (RECQl2) nearly
identical to DNA Helicase [Arabidopsis thaliana]
GI:11121445
Length = 705
Score = 35.5 bits (78), Expect = 0.075
Identities = 24/98 (24%), Positives = 41/98 (41%), Gaps = 6/98 (6%)
Query: 323 IIFCHTRKTASWLSEKMSKDGHSVAVLSGELTVEQRIAVLDRFRVGLEKVLITTNVLSRG 382
I++C +RK ++ + + G S ++ R V R+ +V++ T G
Sbjct: 317 IVYCFSRKECEQIAGDLRERGISADYYHADMDANMREKVHMRWSKNKLQVIVGTVAFGMG 376
Query: 383 IDVEQVTLVVNFDMPMDMNRKADCETYLHRIGRTGRFG 420
I+ V V++ + M ETY GR GR G
Sbjct: 377 INKPDVRFVIHHSLSKSM------ETYYQESGRAGRDG 408
>At1g60930.1 68414.m06858 DNA helicase, putative strong similarity
to DNA Helicase recQl4B [Arabidopsis thaliana]
GI:11121451; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain, PF00570: HRDC domain
Length = 1024
Score = 35.1 bits (77), Expect = 0.100
Identities = 24/99 (24%), Positives = 41/99 (41%), Gaps = 6/99 (6%)
Query: 323 IIFCHTRKTASWLSEKMSKDGHSVAVLSGELTVEQRIAVLDRFRVGLEKVLITTNVLSRG 382
II+C +R ++E + GH A G + +R V ++ ++ T G
Sbjct: 630 IIYCLSRMDCEKVTEALRVFGHKAAFYHGSMDPGKRAFVQKQWSKDEINIICATVAFGMG 689
Query: 383 IDVEQVTLVVNFDMPMDMNRKADCETYLHRIGRTGRFGK 421
I+ V V++ +P + E Y GR GR G+
Sbjct: 690 INKPDVRFVIHHSLPKSI------EGYHQECGRAGRDGQ 722
>At5g63950.1 68418.m08030 SNF2 domain-containing protein / helicase
domain-containing protein low similarity to SP|Q03468
Excision repair protein ERCC-6 (Cockayne syndrome
protein CSB) {Homo sapiens}; contains PFam profiles
PF00271: Helicase conserved C-terminal domain, PF00176:
SNF2 family N-terminal domain
Length = 1090
Score = 34.7 bits (76), Expect = 0.13
Identities = 21/98 (21%), Positives = 45/98 (45%), Gaps = 2/98 (2%)
Query: 321 QAIIFCHTRKTASWLSEKMSKDGHSVAVLSGELTVEQRIAVLDRFRVG--LEKVLITTNV 378
+ +IF TRK + + + ++ +G+S + G R+ ++ F+ G L+T+ V
Sbjct: 750 RVLIFSQTRKMLNLIQDSLTSNGYSFLRIDGTTKAPDRLKTVEEFQEGHVAPIFLLTSQV 809
Query: 379 LSRGIDVEQVTLVVNFDMPMDMNRKADCETYLHRIGRT 416
G+ + + V+ D + + +RIG+T
Sbjct: 810 GGLGLTLTKADRVIVVDPAWNPSTDNQSVDRAYRIGQT 847
>At2g01440.1 68415.m00067 ATP-dependent DNA helicase, putative
Length = 953
Score = 34.7 bits (76), Expect = 0.13
Identities = 21/76 (27%), Positives = 41/76 (53%), Gaps = 7/76 (9%)
Query: 344 HSVAVLSGELTVEQRIAVLDRFRVGLEKVLITTNVLSRGIDVEQVTLVVNFDMPMDMNRK 403
++ +L G + + + L++FR G ++L++T V+ G+DV +++V MN +
Sbjct: 797 YNCGLLHGRMKSDDKEEALNKFRSGETQILLSTQVIEIGVDVPDASMMV------VMNAE 850
Query: 404 ADCETYLHRI-GRTGR 418
LH++ GR GR
Sbjct: 851 RFGIAQLHQLRGRVGR 866
>At3g02060.1 68416.m00169 DEAD/DEAH box helicase, putative similar
to C-terminal half of transcription-repair coupling
factor (TRCF) GB:Q55750 [Synechocystis PCC6803];
contains Pfam profile: helicases conserved C-terminal
domain
Length = 823
Score = 34.3 bits (75), Expect = 0.17
Identities = 21/76 (27%), Positives = 38/76 (50%), Gaps = 5/76 (6%)
Query: 346 VAVLSGELTVEQRIAVLDRFRVGLEKVLITTNVLSRGIDVEQVTLVVNFDMPMDMNRKAD 405
+A+ G+ +Q ++RF G K+LI TN++ G+D++ ++ D+ +
Sbjct: 509 IAMAHGKQYSKQLEETMERFAQGKIKILICTNIVESGLDIQNANTII----IQDVQQFGL 564
Query: 406 CETYLHRIGRTGRFGK 421
+ Y R GR GR K
Sbjct: 565 AQLYQLR-GRVGRADK 579
>At1g01040.1 68414.m00004 DEAD/DEAH box helicase carpel factory /
CAF identical to RNA helicase/RNAseIII CAF protein
GB:AAF03534 GI:6102610 from [Arabidopsis thaliana]
Length = 1909
Score = 34.3 bits (75), Expect = 0.17
Identities = 15/47 (31%), Positives = 26/47 (55%)
Query: 350 SGELTVEQRIAVLDRFRVGLEKVLITTNVLSRGIDVEQVTLVVNFDM 396
S E+ Q + +FR G +L+ T+V G+D+ Q +V+ FD+
Sbjct: 704 SQEMKSSQMQDTISKFRDGHVTLLVATSVAEEGLDIRQCNVVMRFDL 750
>At3g12810.1 68416.m01598 SNF2 domain-containing protein / helicase
domain-containing protein similar to transcriptional
activator SRCAP [Homo sapiens] GI:5106572; contains Pfam
profiles PF00271: Helicase conserved C-terminal domain,
PF00176: SNF2 family N-terminal domain
Length = 2055
Score = 32.3 bits (70), Expect = 0.70
Identities = 23/98 (23%), Positives = 41/98 (41%), Gaps = 2/98 (2%)
Query: 321 QAIIFCHTRKTASWLSEKMSKDGHSVAVLSGELTVEQRIAVLDRFRVGLEKVLITTNVLS 380
+A+IF K L ++ G++ L G E+R ++ RF + L + S
Sbjct: 1093 RALIFTQMTKMLDVLEAFINLYGYTYMRLDGSTPPEERQTLMQRFNTNPKIFLFILSTRS 1152
Query: 381 RGIDVEQV--TLVVNFDMPMDMNRKADCETYLHRIGRT 416
G+ + V V+ +D + + HRIG+T
Sbjct: 1153 GGVGINLVGADTVIFYDSDWNPAMDQQAQDRCHRIGQT 1190
>At5g27680.1 68418.m03319 DEAD/DEAH box helicase, putative similar
to WRN (Werner syndrome) protein - Mus musculus,
EMBL:AF241636; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain, PF00627: UBA/TS-N domain
Length = 858
Score = 31.9 bits (69), Expect = 0.93
Identities = 26/115 (22%), Positives = 46/115 (40%), Gaps = 6/115 (5%)
Query: 320 GQAIIFCHTRKTASWLSEKMSKDGHSVAVLSGELTVEQRIAVLDRFRVGLEKVLITTNVL 379
G II+ TRK + +++ + G A + L + V F +V++ T
Sbjct: 498 GLTIIYVPTRKESVNIAKYLCGVGLKAAAYNASLPKKHLRQVHQDFHDNKLQVVVATIAF 557
Query: 380 SRGIDVEQVTLVVNFDMPMDMNRKADCETYLHRIGRTGRFGKAGIAINLIDSPQA 434
GID + V ++++ + E Y GR GR G+ + D +A
Sbjct: 558 GMGIDKKNVRKIIHYGWLQSL------EAYYQEAGRAGRDGELAECVLYADLSRA 606
>At4g01020.1 68417.m00137 helicase domain-containing protein / IBR
domain-containing protein / zinc finger protein-related
similar to SP|Q14562 ATP-dependent helicase DDX8 (RNA
helicase HRH1) (DEAH-box protein 8) {Homo sapiens};
contains Pfam profiles PF04408: Helicase associated
domain (HA2), PF00271: Helicase conserved C-terminal
domain, PF00097: Zinc finger, C3HC4 type (RING finger),
PF01485: IBR domain
Length = 1787
Score = 31.9 bits (69), Expect = 0.93
Identities = 20/94 (21%), Positives = 37/94 (39%), Gaps = 1/94 (1%)
Query: 303 AEDKYRAICNIYGVITIGQAIIFCHTRKTASWLSEKMSKDGHSVAVLSGELTVEQRIAVL 362
A D + I+ G + F ++ W E+ L G+L+ E++ V
Sbjct: 505 AGDVVKMAVEIHKTEKEGTILAFLTSQAEVEWACERFVAPSAIALPLHGKLSFEEQFMVF 564
Query: 363 DRFRVGLEKVLITTNVLSRGIDVEQVTLVVNFDM 396
+ G KV+ TN+ + + V V++ M
Sbjct: 565 QNY-PGRRKVIFATNIAETSLTIPGVKYVIDSGM 597
>At5g20320.1 68418.m02418 DEAD/DEAH box helicase, putative similar
to CAF protein [Arabidopsis thaliana] GI:6102610;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain, PF03368:
Domain of unknown function, PF00636: RNase3 domain,
PF00035: Double-stranded RNA binding motif
Length = 1676
Score = 31.5 bits (68), Expect = 1.2
Identities = 17/59 (28%), Positives = 31/59 (52%), Gaps = 2/59 (3%)
Query: 341 KDGHSVAVLSGELTVEQRI--AVLDRFRVGLEKVLITTNVLSRGIDVEQVTLVVNFDMP 397
K V + SG ++ +R +L RF+ +L+ T V G+D++ LV+ +D+P
Sbjct: 541 KSDFLVGLSSGLKSMSRRSMETILKRFQSKELNLLVATKVGEEGLDIQTCCLVIRYDLP 599
>At5g05130.1 68418.m00544 SNF2 domain-containing protein / helicase
domain-containing protein / RING finger
domain-containing protein similar to transcription
factor RUSH-1alpha [Oryctolagus cuniculus] GI:1655930;
contains Pfam profiles PF00271: Helicase conserved
C-terminal domain, PF00176: SNF2 family N-terminal
domain, PF00097: Zinc finger, C3HC4 type (RING finger)
Length = 862
Score = 31.1 bits (67), Expect = 1.6
Identities = 23/99 (23%), Positives = 43/99 (43%), Gaps = 4/99 (4%)
Query: 321 QAIIFCHTRKTASWLSEKMSKDGHSVAVLSGELTVEQRIAVLDRF----RVGLEKVLITT 376
++++F RK L + G ++ L G +TV++R V+ F G +L +
Sbjct: 708 KSVVFSQFRKMLLLLETPLKAAGFTILRLDGAMTVKKRTQVIGEFGNPELTGPVVLLASL 767
Query: 377 NVLSRGIDVEQVTLVVNFDMPMDMNRKADCETYLHRIGR 415
GI++ + V FD + + +HRIG+
Sbjct: 768 KASGTGINLTAASRVYLFDPWWNPAVEEQAMDRIHRIGQ 806
>At3g60040.1 68416.m06705 F-box family protein contains a novel
domain with similarity to F-box domain;
Length = 838
Score = 31.1 bits (67), Expect = 1.6
Identities = 14/46 (30%), Positives = 28/46 (60%), Gaps = 4/46 (8%)
Query: 54 QGLVESKLDIEIQRK----DPNSPLYSVKTFEALHLKPNLLKGVYA 95
+ LVE+KLD+ ++RK D + ++ ++LHL P+ + +Y+
Sbjct: 494 ESLVEAKLDLGLERKVLRMDVTDLIIGIRNVQSLHLSPDSVHVIYS 539
>At1g11100.1 68414.m01271 SNF2 domain-containing protein / helicase
domain-containing protein / zinc finger protein-related
similar to RUSH-1alpha [Oryctolagus cuniculus]
GI:1655930; contains Pfam profiles PF00271: Helicase
conserved C-terminal domain, PF00176: SNF2 family
N-terminal domain
Length = 1226
Score = 31.1 bits (67), Expect = 1.6
Identities = 23/109 (21%), Positives = 46/109 (42%), Gaps = 4/109 (3%)
Query: 312 NIYGVITIG--QAIIFCHTRKTASWLSEKMSKDGHSVAVLSGELTVEQRIAVLDRFRV-- 367
++ GV+ + +AI+F K L + G G++TV R A + F
Sbjct: 1062 SVGGVVNVAGEKAIVFTQWTKMLDLLEAGLKSSGIQYRRFDGKMTVPARDAAVQDFNTLP 1121
Query: 368 GLEKVLITTNVLSRGIDVEQVTLVVNFDMPMDMNRKADCETYLHRIGRT 416
+ ++++ S G+++ V+ D+ + + HRIG+T
Sbjct: 1122 DVSVMIMSLKAASLGLNMVAACHVIMLDLWWNPTTEDQAIDRAHRIGQT 1170
>At5g15570.1 68418.m01823 expressed protein hypothetical protein
F14P3.19 - Arabidopsis thaliana, EMBL:AC009755
Length = 381
Score = 30.7 bits (66), Expect = 2.1
Identities = 19/44 (43%), Positives = 24/44 (54%), Gaps = 5/44 (11%)
Query: 102 SKIQETALPTLLADPPQNMIAQSQSGTGKTAAFVLAMLSRVDSN 145
S QETAL TL +++ Q GKTA F + M RV+SN
Sbjct: 61 SSFQETALETLT-----DVVIQYIQNIGKTAQFYVNMAGRVESN 99
>At3g05740.1 68416.m00644 DNA helicase (RECQI1) identical to DNA
Helicase [Arabidopsis thaliana] GI:10944747
Length = 606
Score = 30.7 bits (66), Expect = 2.1
Identities = 50/207 (24%), Positives = 87/207 (42%), Gaps = 16/207 (7%)
Query: 220 GKIKVFVLDEADVMINRQGHQDQC-IRIHKCLPSTCQMMFFSATYGTAVMQFAEIIVSNP 278
G + FV+DEA +++ GH + R CL + A TA + ++ +
Sbjct: 327 GLLAGFVVDEAHC-VSQWGHDFRPDYRELGCLKQNFPRVPVMALTATATESVCQDVLKSL 385
Query: 279 IIIRLLREEESLDNIK-QYYVKCKSAEDKYRAICNIYGVITIGQAIIFCHTRK----TAS 333
I R + S D I +Y V K+ E + + I++C ++ A
Sbjct: 386 RIPRAPVLKMSFDRINLKYEVIVKTKEPLKQLQELLRDRFKDQSGIVYCLSKSECVDVAK 445
Query: 334 WLSEKMSKDGHSVAVLSGELTVEQRIAVLDRFRVGLEKVLITTNVLSRGIDVEQVTLVVN 393
+L+EK +V +G + +QR+ V +++ G +++ T GID V V++
Sbjct: 446 FLNEKCKVK--TVYYHAG-VPAKQRVDVQRKWQTGEVRIVCATIAFGMGIDKADVRFVIH 502
Query: 394 FDMPMDMNRKADCETYLHRIGRTGRFG 420
+ KA E+Y GR GR G
Sbjct: 503 NTL-----SKA-VESYYQESGRAGRDG 523
>At2g13370.1 68415.m01476 chromodomain-helicase-DNA-binding family
protein / CHD family protein similar to SP|O14647
Chromodomain-helicase-DNA-binding protein 2 (CHD-2) {Homo
sapiens}; contains Pfam profiles PF00271: Helicase
conserved C-terminal domain, PF00176: SNF2 family
N-terminal domain, PF00385: 'chromo' (CHRromatin
Organization MOdifier)
Length = 1722
Score = 30.7 bits (66), Expect = 2.1
Identities = 24/98 (24%), Positives = 37/98 (37%), Gaps = 3/98 (3%)
Query: 321 QAIIFCHTRKTASWLSEKMSKDGHSVAVLSGELTVEQRIAVLDRFRVGLEK---VLITTN 377
+ +IF + L+E +S G L G E R +D F L++T
Sbjct: 955 RVLIFSQMVRMLDILAEYLSLRGFQFQRLDGSTKAELRQQAMDHFNAPASDDFCFLLSTR 1014
Query: 378 VLSRGIDVEQVTLVVNFDMPMDMNRKADCETYLHRIGR 415
GI++ VV FD + + HRIG+
Sbjct: 1015 AGGLGINLATADTVVIFDSDWNPQNDLQAMSRAHRIGQ 1052
>At3g19960.1 68416.m02526 myosin (ATM) nearly identical to myosin
[Arabidopsis thaliana] GI:6491702; similar to myosin
GI:6491702 from [Arabidopsis thaliana] ;contains Pfam
profiles: PF00063: myosin head (motor domain), PF00612:
IQ calmodulin-binding motif; identical to cDNA myosin
(ATM) GI:297068
Length = 1166
Score = 30.3 bits (65), Expect = 2.8
Identities = 23/67 (34%), Positives = 32/67 (47%), Gaps = 9/67 (13%)
Query: 73 PLYSVKTFEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPP-QNMIAQSQSGTGKT 131
PLY + EA K N VYA I +TA+ ++ D Q++I +SG GKT
Sbjct: 212 PLYGNRYIEAYRKKSNESPHVYA--------IADTAIREMIRDEVNQSIIISGESGAGKT 263
Query: 132 AAFVLAM 138
+AM
Sbjct: 264 ETAKIAM 270
>At4g19710.2 68417.m02895 bifunctional aspartate kinase/homoserine
dehydrogenase, putative / AK-HSDH, putative similar to
gb|X71364 [PIR|S46497] aspartate kinase / homoserine
dehydrogenase from Arabidopsis thaliana
Length = 916
Score = 29.9 bits (64), Expect = 3.7
Identities = 22/70 (31%), Positives = 33/70 (47%), Gaps = 6/70 (8%)
Query: 43 ADTSLLMKIIRQGLVESKLDIEIQRKDPNSPLYSVKTFEALHLKPNLLKGVYAMGFNAPS 102
A ++ ++ I QG E + + I+R+D SVK A+H + L + AMG P
Sbjct: 513 AKANINVRAISQGCSEYNVTVVIKRED------SVKALRAVHSRFFLSRTTLAMGIVGPG 566
Query: 103 KIQETALPTL 112
I T L L
Sbjct: 567 LIGATLLDQL 576
>At4g19710.1 68417.m02894 bifunctional aspartate kinase/homoserine
dehydrogenase, putative / AK-HSDH, putative similar to
gb|X71364 [PIR|S46497] aspartate kinase / homoserine
dehydrogenase from Arabidopsis thaliana
Length = 859
Score = 29.9 bits (64), Expect = 3.7
Identities = 22/70 (31%), Positives = 33/70 (47%), Gaps = 6/70 (8%)
Query: 43 ADTSLLMKIIRQGLVESKLDIEIQRKDPNSPLYSVKTFEALHLKPNLLKGVYAMGFNAPS 102
A ++ ++ I QG E + + I+R+D SVK A+H + L + AMG P
Sbjct: 513 AKANINVRAISQGCSEYNVTVVIKRED------SVKALRAVHSRFFLSRTTLAMGIVGPG 566
Query: 103 KIQETALPTL 112
I T L L
Sbjct: 567 LIGATLLDQL 576
>At2g18760.1 68415.m02184 SNF2 domain-containing protein / helicase
domain-containing protein similar to SP|Q03468 Excision
repair protein ERCC-6 (Cockayne syndrome protein CSB)
{Homo sapiens}; contains PFam profiles PF00271: Helicase
conserved C-terminal domain, PF00176: SNF2 family
N-terminal domain
Length = 1187
Score = 29.9 bits (64), Expect = 3.7
Identities = 21/97 (21%), Positives = 43/97 (44%), Gaps = 2/97 (2%)
Query: 321 QAIIFCHTRKTASWLSEKMSKDGHSVAVLSGELTVEQRIAVLDRFRVGLEK--VLITTNV 378
+ ++F T++ L + + +S + G V+QR+A++D F + ++TT V
Sbjct: 745 RVLLFSQTQQMLDILESFLVANEYSYRRMDGLTPVKQRMALIDEFNNSEDMFVFVLTTKV 804
Query: 379 LSRGIDVEQVTLVVNFDMPMDMNRKADCETYLHRIGR 415
G ++ V+ FD + + RIG+
Sbjct: 805 GGLGTNLTGANRVIIFDPDWNPSNDMQARERAWRIGQ 841
>At1g50360.1 68414.m05645 myosin family protein contains Pfam
profiles: PF00063 myosin head (motor domain), PF00612 IQ
calmodulin-binding motif
Length = 1153
Score = 29.9 bits (64), Expect = 3.7
Identities = 22/67 (32%), Positives = 32/67 (47%), Gaps = 9/67 (13%)
Query: 73 PLYSVKTFEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPP-QNMIAQSQSGTGKT 131
PLY + EA + N VYA I +TA+ ++ D Q++I +SG GKT
Sbjct: 204 PLYGNRNIEAYRKRSNESPHVYA--------IADTAIREMIRDEVNQSIIISGESGAGKT 255
Query: 132 AAFVLAM 138
+AM
Sbjct: 256 ETAKIAM 262
>At5g43820.1 68418.m05358 pentatricopeptide (PPR) repeat-containing
protein low similarity to fertility restorer [Petunia x
hybrida] GI:22128587; contains Pfam profile PF01535: PPR
repeat
Length = 680
Score = 29.1 bits (62), Expect = 6.5
Identities = 16/48 (33%), Positives = 24/48 (50%), Gaps = 4/48 (8%)
Query: 401 NRKADCE----TYLHRIGRTGRFGKAGIAINLIDSPQAMEICTDIEAH 444
+RKA C Y + R RFGK G+ +N+ D Q +D+E +
Sbjct: 421 SRKAGCRISESAYKLLLKRLSRFGKCGMLLNVWDEMQESGYPSDVEVY 468
>At3g42670.1 68416.m04437 SNF2 domain-containing protein / helicase
domain-containing protein low similarity to SP|P41410 DNA
repair protein rhp54 (RAD54 homolog) {Schizosaccharomyces
pombe}; contains PFam profiles PF00271: Helicase
conserved C-terminal domain, PF00176: SNF2 family
N-terminal domain
Length = 1256
Score = 29.1 bits (62), Expect = 6.5
Identities = 22/91 (24%), Positives = 41/91 (45%), Gaps = 8/91 (8%)
Query: 313 IYGVITIGQAIIFCHTRKTASWLSEKMS-----KDGHSVAVLSGELTVEQRIAVLDRFRV 367
++ V+ + +IFCH E K G + L+G+L + +R V+D+F
Sbjct: 1066 VFRVVKREKILIFCHNIAPIRLFLELFENVFRWKRGRELLTLTGDLELFERGRVIDKFEE 1125
Query: 368 --GLEKVLITT-NVLSRGIDVEQVTLVVNFD 395
G +VL+ + + GI + + V+ D
Sbjct: 1126 PGGQSRVLLASITACAEGISLTAASRVIMLD 1156
>At4g30350.1 68417.m04313 heat shock protein-related contains
similarity to heat shock protein 101 [Triticum aestivum]
gi|6013196|gb|AAF01280
Length = 924
Score = 28.7 bits (61), Expect = 8.7
Identities = 20/61 (32%), Positives = 35/61 (57%), Gaps = 4/61 (6%)
Query: 265 TAVMQFAEIIVSNPIIIRLLREEESLDNIKQYYVKCKSAEDKYRAICNIYG-VITIGQAI 323
TA+ +FAE + NP + +L + + D + + VK A ++ R IC+ YG +++G I
Sbjct: 658 TALDRFAEAVRRNPFAVIVLEDIDEADILLRNNVKI--AIERGR-ICDSYGREVSLGNVI 714
Query: 324 I 324
I
Sbjct: 715 I 715
>At2g02090.1 68415.m00145 SNF2 domain-containing protein / helicase
domain-containing protein similar to transcriptional
activator SRCAP [Homo sapiens] GI:5106572; contains Pfam
profiles PF00271: Helicase conserved C-terminal domain,
PF00176: SNF2 family N-terminal domain
Length = 763
Score = 28.7 bits (61), Expect = 8.7
Identities = 18/70 (25%), Positives = 30/70 (42%), Gaps = 2/70 (2%)
Query: 349 LSGELTVEQRIAVLDRFR--VGLEKVLITTNVLSRGIDVEQVTLVVNFDMPMDMNRKADC 406
L G V R ++D F + L++T +G+++ V+ DM +
Sbjct: 634 LDGSTQVTDRQTIVDTFNNDKSIFACLLSTRAGGQGLNLTGADTVIIHDMDFNPQIDRQA 693
Query: 407 ETYLHRIGRT 416
E HRIG+T
Sbjct: 694 EDRCHRIGQT 703
Database: arabidopsis
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.319 0.135 0.390
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,632,283
Number of Sequences: 28952
Number of extensions: 439864
Number of successful extensions: 1477
Number of sequences better than 10.0: 99
Number of HSP's better than 10.0 without gapping: 75
Number of HSP's successfully gapped in prelim test: 24
Number of HSP's that attempted gapping in prelim test: 1125
Number of HSP's gapped (non-prelim): 117
length of query: 465
length of database: 12,070,560
effective HSP length: 84
effective length of query: 381
effective length of database: 9,638,592
effective search space: 3672303552
effective search space used: 3672303552
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 61 (28.7 bits)
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