GeneModel BLAST Result against mosquito

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001222-TA|BGIBMGA001222-PA|IPR008530|Protein of unknown
function DUF812
         (253 letters)

Database: mosquito 
           2123 sequences; 516,269 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB090819-1|BAC57913.1|  400|Anopheles gambiae gag-like protein p...    39   2e-04
AJ535204-1|CAD59404.1| 1187|Anopheles gambiae SMC2 protein protein.    38   4e-04
AJ535206-1|CAD59406.1| 1376|Anopheles gambiae SMC4 protein protein.    33   0.006
AJ535207-1|CAD59407.1| 1036|Anopheles gambiae SMC5 protein protein.    32   0.014
AJ535203-1|CAD59403.1| 1229|Anopheles gambiae SMC1 protein protein.    31   0.032
AJ535205-1|CAD59405.1| 1201|Anopheles gambiae SMC3 protein protein.    30   0.074
AJ535208-1|CAD59408.1| 1133|Anopheles gambiae SMC6 protein protein.    27   0.69 
AY939827-1|AAY18208.1|  680|Anopheles gambiae CTCF-like protein ...    25   2.1  

>AB090819-1|BAC57913.1|  400|Anopheles gambiae gag-like protein
           protein.
          Length = 400

 Score = 38.7 bits (86), Expect = 2e-04
 Identities = 25/90 (27%), Positives = 45/90 (50%), Gaps = 4/90 (4%)

Query: 27  ITDENSEGVSDEVLEKVQKNINKLHAKSEDLTSKSLSLKAEIENVKQSMNRSESERNKYK 86
           + DE  E + +E + K++K+  K     E+   + +S KA++E  K   N  E E +   
Sbjct: 12  VEDEEHERLIEEFISKLKKSYKKASKAEENEAPRKVSHKAQLERFKNYANNLEIE-DLRD 70

Query: 87  NMLGHLKESAKAMKEEYGQKEHLRNQLKSK 116
            M+  + E  ++M +E  +   L+ QLK K
Sbjct: 71  GMIAQMIEFMESMIKEMSE---LKKQLKQK 97


>AJ535204-1|CAD59404.1| 1187|Anopheles gambiae SMC2 protein protein.
          Length = 1187

 Score = 37.5 bits (83), Expect = 4e-04
 Identities = 31/116 (26%), Positives = 60/116 (51%), Gaps = 8/116 (6%)

Query: 13  EDLKNVINILNSIGITDENSEGVS-DEVLEKVQKNINKLHAKSEDLTSKSLSLKAEIENV 71
           E LK  I  L   GI     + V  +E +  +Q+ + ++   ++++T+   +LK +I+  
Sbjct: 818 ETLKLEIEELQK-GIVTAKEQAVKLEEQIAALQQRLVEVSGTTDEMTAAVTALKQQIKQH 876

Query: 72  KQSMNRSESE-RNKYKNMLGHLKESAKAMKEEYGQKEH----LRNQLKSKYEKLRG 122
           K+ MN    E + KY      LK++ + +K E  +KE+    +RN+ K  Y+++ G
Sbjct: 877 KEKMNSQSKELKAKYHQRDKLLKQNDE-LKLEIKKKENEITKVRNENKDGYDRISG 931


>AJ535206-1|CAD59406.1| 1376|Anopheles gambiae SMC4 protein protein.
          Length = 1376

 Score = 33.5 bits (73), Expect = 0.006
 Identities = 25/143 (17%), Positives = 67/143 (46%), Gaps = 9/143 (6%)

Query: 40  LEKVQKNINKLHAKSEDLTSKSLSLKAEIENVKQSMNRSESERNKYKNMLGHLKESAKAM 99
           L++ +  + ++H     LT +   LK +++   + + R+ S+  K + +   + E  +A 
Sbjct: 807 LKQQEMELKRMHMDVASLTQQMPRLKEQVDWQAERVARTHSDPEKVRALEAKVAECKQAF 866

Query: 100 KEEYGQKEHLRNQLKSKYEKLR---GGNKRSIYTK------RIVEIISNVDKQNIEIKKI 150
                + + ++  +    E++        + + TK      +I ++ +N+ K  +EIK  
Sbjct: 867 DSSSTKADAMQKNVDRYTEQINEITNSKVKVLQTKINGLGKQIDKLSANISKLTVEIKTS 926

Query: 151 LEDTRQLQKEINILEGQLERSFS 173
             + ++ + +IN +E ++E + S
Sbjct: 927 ERNVQKSKDKINSMEDEVEAAQS 949



 Score = 32.3 bits (70), Expect = 0.014
 Identities = 42/228 (18%), Positives = 86/228 (37%), Gaps = 10/228 (4%)

Query: 34  GVSDEVLEKVQKNINKLHAKSEDLTSKSLSLKAEIENVKQSMNRSESERNKYKNMLGHLK 93
           G S   +E++Q    ++  +   L  +   L+A I+ +   + + E E  +    +  L 
Sbjct: 766 GASSREIEQMQIRAQEIQTQINYLQEQQGELEATIQRLTAKLKQQEMELKRMHMDVASLT 825

Query: 94  ESAKAMKEEYGQKEHLRNQLKSKYEKLRGGNKRSIYTKRIVEIIS--------NVDKQNI 145
           +    +KE+   +     +  S  EK+R    +    K+  +  S        NVD+   
Sbjct: 826 QQMPRLKEQVDWQAERVARTHSDPEKVRALEAKVAECKQAFDSSSTKADAMQKNVDRYTE 885

Query: 146 EIKKILED-TRQLQKEINILEGQLERSFSVADETLFRXXXXXXXXXXXXXXXXXXHSECK 204
           +I +I     + LQ +IN L  Q+++  +   +                        E +
Sbjct: 886 QINEITNSKVKVLQTKINGLGKQIDKLSANISKLTVEIKTSERNVQKSKDKINSMEDEVE 945

Query: 205 TIVSLVNDIGSLQRDIVDLEENVKTETAKRTEDTLEKIKFDIAKIKEE 252
              S +   G+ +R  ++ E N   E  +  +  +EK     + IK+E
Sbjct: 946 AAQSAIRK-GNDERTQLEEEANKLREELEEMKLAIEKAHEGSSSIKKE 992



 Score = 27.5 bits (58), Expect = 0.40
 Identities = 22/95 (23%), Positives = 42/95 (44%), Gaps = 5/95 (5%)

Query: 72  KQSMNRSESERNKYKNMLGHLKESAKAMKEEYGQKEHLRNQLKSKYEKLRGGNKRSIYT- 130
           K+ +   E ER++   +L    E+  A+K E  +KE L  +   +Y++L    +    T 
Sbjct: 319 KRKIGEFEVERDQAAGILAKHDETYDALKAERVEKEKLVKEEIKQYDELVSAKESKESTL 378

Query: 131 ----KRIVEIISNVDKQNIEIKKILEDTRQLQKEI 161
                +  ++ +N+   N   KK LE     +K +
Sbjct: 379 KNSLDKFAKVQANMRATNERRKKTLEQIAAEEKRL 413


>AJ535207-1|CAD59407.1| 1036|Anopheles gambiae SMC5 protein protein.
          Length = 1036

 Score = 32.3 bits (70), Expect = 0.014
 Identities = 23/83 (27%), Positives = 42/83 (50%), Gaps = 6/83 (7%)

Query: 72  KQSMNRSESERNKYKNMLGHLKESAKAMKEEYG----QKEHLRNQLKSKYEKLRGGNKRS 127
           +Q   R   E +K +N  G ++ S K ++E       QK  L+ QL SKY++ +   KR 
Sbjct: 618 RQEHQRLVRECDKIRNQRGQIENSIKELQERCAELREQKRDLQEQL-SKYQQTKMKVKRQ 676

Query: 128 IYT-KRIVEIISNVDKQNIEIKK 149
               K +   + NVD++ ++ ++
Sbjct: 677 EQKCKELTARLVNVDEEKVKFER 699


>AJ535203-1|CAD59403.1| 1229|Anopheles gambiae SMC1 protein protein.
          Length = 1229

 Score = 31.1 bits (67), Expect = 0.032
 Identities = 34/170 (20%), Positives = 81/170 (47%), Gaps = 17/170 (10%)

Query: 1   MIKAQVSCEKVEEDLKNVINILNSIG-ITDENSE--GVSDEV------LEKVQKNINKLH 51
           M + ++  EK+ E+LK V+      G +T   S+  G+ + +      LE  +KNIN+  
Sbjct: 684 MAQLKLQKEKITEELKEVMKKTRRQGELTTVESQIRGLENRLKYSMNDLETSKKNINEYD 743

Query: 52  AKSEDLTSKSLSLKAEIENVKQSMNRSESERNKYKNMLGHLKESAKAMKEEYGQKEHLRN 111
            + ED T +   +  +I  +++ M + + +    K  + ++++   A   E+  +  + N
Sbjct: 744 RQLEDFTRELDQIGPKISEIERRMQQRDMKIQDIKESMNNVEDDVYA---EFCARIGVAN 800

Query: 112 QLKSKYEKLRGGNKRSIYTKRIVEIISNVDK--QNIEIKKILEDTRQLQK 159
             + +  +L    +R+   K+  E    +D+   N+E ++  + ++ +Q+
Sbjct: 801 IRQFEERELVLQQERA---KKRAEFEQQIDRINNNLEFERSKDTSKNVQR 847



 Score = 29.5 bits (63), Expect = 0.098
 Identities = 33/134 (24%), Positives = 55/134 (41%), Gaps = 15/134 (11%)

Query: 45  KNINKLHAKSEDLTSKSLSLKAEIENVKQSMNRSESERN-KYKNMLGHLKESAKAMKEEY 103
           KN  +  A  E+++   L LK +   +K  M  +E E    Y+   G   E  +A     
Sbjct: 156 KNAKERTALFEEISGSGL-LKEDYNRLKHEMQMAEEETQFTYQKKRGIAAERKEA----- 209

Query: 104 GQKEHLRNQLKSKYEKLRGGNKRSIYTKRIVEIISNVDKQNIEIKKILEDTRQLQKEINI 163
                L  Q   +Y  L    K+    K++   +  +     E K++ ED    Q+E+NI
Sbjct: 210 ----RLEKQEADRYASL----KQECSEKQVHFQLFKLYHNEKEAKRLKEDQISKQQELNI 261

Query: 164 LEGQLERSFSVADE 177
           +E + E +  V  E
Sbjct: 262 IEKRKEEADEVLKE 275



 Score = 25.0 bits (52), Expect = 2.1
 Identities = 16/100 (16%), Positives = 45/100 (45%), Gaps = 2/100 (2%)

Query: 42   KVQKNINKLHAKSEDLTSKSLSLKAEIENVKQSMNRSESERNKYKNMLGHLKESAKAMKE 101
            K++ ++  L +  + +     SL  E+++   ++ + ++   K    L  + E  ++  E
Sbjct: 985  KLEHHLKNL-SDPDQIKKSGDSLAKELQSKLDTLEKIQTPNMKAMQKLDRVTEKIQSTNE 1043

Query: 102  EYGQKEHLRNQLKSKYEKLRGGNKRSIYTKRIVEIISNVD 141
            E+        + K+ +EK++   + +++T     I   +D
Sbjct: 1044 EFEAARKKAKKAKAAFEKVK-NERCTLFTNCCNHISDAID 1082


>AJ535205-1|CAD59405.1| 1201|Anopheles gambiae SMC3 protein protein.
          Length = 1201

 Score = 29.9 bits (64), Expect = 0.074
 Identities = 34/152 (22%), Positives = 68/152 (44%), Gaps = 18/152 (11%)

Query: 30  ENSEGVSDEVLEKVQKNINKLHAKSEDLTSKSLSLKAEIENVKQSMNRSESERNKYKNML 89
           + +E   + ++ ++QK   K   KS+D   K   ++A+I  +K  ++R E  R+  +  L
Sbjct: 705 KQTEANINSIVSEMQKTETK-QGKSKDAFEK---IQADIRLMKDELSRIERFRSPKERSL 760

Query: 90  GHLKESAKAMKEEYGQKEHLRNQLKSKYEKLRGGNKRSIYTKRIVEIISNVDKQNIEIKK 149
              K + +AM      KE L N+L  +           + ++  V+    VD  N EI++
Sbjct: 761 AQCKANLEAMTST---KEGLENELHQE-----------LMSQLSVQDQHEVDSLNDEIRR 806

Query: 150 ILEDTRQLQKEINILEGQLERSFSVADETLFR 181
           + ++ ++       LE    +  ++    LFR
Sbjct: 807 LNQENKEAFTSRMSLEVTKNKLENLLTNNLFR 838



 Score = 26.2 bits (55), Expect = 0.91
 Identities = 26/130 (20%), Positives = 59/130 (45%), Gaps = 4/130 (3%)

Query: 33  EGVSDEVLEKVQKNINKLHAKSED-LTSKSLSLKAEIENVKQSMNRSESERNKYKNMLGH 91
           EG+ +E+ +++   ++       D L  +   L  E +    S    E  +NK +N+L +
Sbjct: 775 EGLENELHQELMSQLSVQDQHEVDSLNDEIRRLNQENKEAFTSRMSLEVTKNKLENLLTN 834

Query: 92  LKESAKAMKEEYGQKEHLRNQLKSKYEKLRGGNKRSIYTKRIVEIISNVDKQNIEIKKIL 151
              +    K+E  Q     +    K +     N+     KRI +++++ ++ + ++ + L
Sbjct: 835 ---NLFRRKDELVQALQEISVEDRKRQLTNCRNEVVATEKRIKKVLTDTEEVDRKLSEAL 891

Query: 152 EDTRQLQKEI 161
           +  + LQKE+
Sbjct: 892 KQQKTLQKEL 901



 Score = 25.8 bits (54), Expect = 1.2
 Identities = 13/31 (41%), Positives = 21/31 (67%), Gaps = 1/31 (3%)

Query: 223 LEENVKTETAK-RTEDTLEKIKFDIAKIKEE 252
           + E  KTET + +++D  EKI+ DI  +K+E
Sbjct: 715 VSEMQKTETKQGKSKDAFEKIQADIRLMKDE 745


>AJ535208-1|CAD59408.1| 1133|Anopheles gambiae SMC6 protein protein.
          Length = 1133

 Score = 26.6 bits (56), Expect = 0.69
 Identities = 34/164 (20%), Positives = 75/164 (45%), Gaps = 11/164 (6%)

Query: 11  VEEDLKNVINILNSIGITDENSEGVSDEVLEKVQKNINKLHAKSEDLTSKSLSLKAEIEN 70
           + E+L++   IL  +    E  +   D+V   VQ+      AK + + +    ++AEI  
Sbjct: 784 LREELEHSRTILAKLQKGIEEEQAKLDQVRRTVQQEEQTAQAKKDAMGA----VEAEIAR 839

Query: 71  VKQSMNRSESERN----KYKNMLGHLKESAKAMKEEYGQKEHLRNQLKSKYEKLRGGNKR 126
           ++ S+++ +  R+     +K     LK S ++M+E    +  L   L+   ++     +R
Sbjct: 840 IQASIDKEQQARHDLQTNHKVKQQALKRSTESMEERKRTRVALSAALEQARQEASEKGER 899

Query: 127 SIYTKRIVEIISNVDKQNIEIKKI--LEDTR-QLQKEINILEGQ 167
              +++I  +     K +   K+I  +  T+ +L+  +  LEG+
Sbjct: 900 PDESEQIPSVEQLKGKIHTTEKRIRLVSATQDKLEDVVEELEGK 943



 Score = 24.6 bits (51), Expect = 2.8
 Identities = 32/140 (22%), Positives = 63/140 (45%), Gaps = 15/140 (10%)

Query: 9   EKVEEDLKNVINILNSIGITDENSEGVSDEVLEKVQ-----KNI----NKLHAKSEDLTS 59
           EK  E L N I +L       E S G   E+L ++Q     +N+     +L A  ++L  
Sbjct: 279 EKSLEYLSNEIVVLEEKQSNLE-SAGRMGELLSELQAKLAWRNVIDQEEQLAAVDDELKK 337

Query: 60  KSLSLKAE---IENVKQSMNRSESERNKYKNMLGHLKESAKAMKEEYGQKEHLRNQLKSK 116
              S++ +   I N +  + +++S  + Y+  +   K+   A+KE YG        +++K
Sbjct: 338 LRTSIEEQEHRIRNREALVAKTDSTIDTYRADIESKKQEYVALKEAYGTVRRTLQDVQAK 397

Query: 117 YEKLRGGNKRSIYTKRIVEI 136
              +  G + +  ++R+  I
Sbjct: 398 QAAIERGMRNA--SERVTRI 415


>AY939827-1|AAY18208.1|  680|Anopheles gambiae CTCF-like protein
           protein.
          Length = 680

 Score = 25.0 bits (52), Expect = 2.1
 Identities = 12/39 (30%), Positives = 23/39 (58%), Gaps = 1/39 (2%)

Query: 136 IISNVDKQNIEIK-KILEDTRQLQKEINILEGQLERSFS 173
           I+S  D Q  E+     EDT++ + ++ I + +LE++ S
Sbjct: 634 ILSTEDLQEAEMMMSTFEDTKRSRYDVTISQAELEKNMS 672


  Database: mosquito
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 516,269
  Number of sequences in database:  2123
  
Lambda     K      H
   0.307    0.126    0.319 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 194,566
Number of Sequences: 2123
Number of extensions: 6381
Number of successful extensions: 28
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 9
Number of HSP's gapped (non-prelim): 16
length of query: 253
length of database: 516,269
effective HSP length: 63
effective length of query: 190
effective length of database: 382,520
effective search space: 72678800
effective search space used: 72678800
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.6 bits)
S2: 47 (23.0 bits)