Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001221-TA|BGIBMGA001221-PA|IPR008530|Protein of unknown
function DUF812
(135 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC19G7.14c |cog5||Golgi transport complex subunit Cog5 |Schizo... 31 0.082
SPBC839.02 |||arrestin Aly1 related|Schizosaccharomyces pombe|ch... 28 0.58
SPBC18H10.09 |||zinc finger protein, zf-CHY type|Schizosaccharom... 27 0.76
SPAC222.14c |||GTP binding protein Sey1 |Schizosaccharomyces pom... 25 3.1
SPCC188.03 |cnd3||condensin subunit Cnd3 |Schizosaccharomyces po... 25 3.1
SPAC140.04 |||conserved fungal protein|Schizosaccharomyces pombe... 25 4.1
SPBC16A3.11 |eso1||sister chromatid cohesion protein Eso1|Schizo... 25 4.1
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha... 25 4.1
SPBP4G3.03 |||PI31 proteasome regulator related|Schizosaccharomy... 24 7.1
SPAC14C4.02c |smc5|spr18|Smc5-6 complex SMC subunit Smc5 |Schizo... 24 7.1
SPAC30D11.04c |nup124||nucleoporin Nup124|Schizosaccharomyces po... 24 7.1
>SPBC19G7.14c |cog5||Golgi transport complex subunit Cog5
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 411
Score = 30.7 bits (66), Expect = 0.082
Identities = 19/56 (33%), Positives = 32/56 (57%), Gaps = 3/56 (5%)
Query: 64 YYNEAELRQVFMFLIERLPNEGKQSSVSASLK---TNQSTLMKDVSNKISEEMEKI 116
YY + L Q L+ R P +QSSVS LK TN+S ++K+ S+ + + +++
Sbjct: 156 YYQASLLLQESDQLLSRFPLMKRQSSVSLLLKLNITNRSRIIKETSSYLLSQEDQL 211
>SPBC839.02 |||arrestin Aly1 related|Schizosaccharomyces pombe|chr
2|||Manual
Length = 530
Score = 27.9 bits (59), Expect = 0.58
Identities = 20/75 (26%), Positives = 32/75 (42%), Gaps = 1/75 (1%)
Query: 27 PQKLPKGISHRIEVAAQIASFCKDLGYKNDVGYQTFLYYNEAELRQVFMFLIERLPNEGK 86
P + K R+ Q+ C +G V ++ F E + ++ +FL+ER +
Sbjct: 256 PILVSKSWEDRLHYEVQVGEKCVVMGQVVPVNFK-FTLLGEVKFHKLRLFLMERRYYYCR 314
Query: 87 QSSVSASLKTNQSTL 101
Q SV KT Q L
Sbjct: 315 QRSVRRKEKTRQLLL 329
>SPBC18H10.09 |||zinc finger protein, zf-CHY
type|Schizosaccharomyces pombe|chr 2|||Manual
Length = 428
Score = 27.5 bits (58), Expect = 0.76
Identities = 11/31 (35%), Positives = 16/31 (51%)
Query: 105 VSNKISEEMEKIWVPHCCKPNEQQKGITSSM 135
V NK S + +WVP PN + GI ++
Sbjct: 205 VCNKCSNTLRLVWVPGVIHPNNARLGILHTL 235
>SPAC222.14c |||GTP binding protein Sey1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 762
Score = 25.4 bits (53), Expect = 3.1
Identities = 13/54 (24%), Positives = 26/54 (48%)
Query: 67 EAELRQVFMFLIERLPNEGKQSSVSASLKTNQSTLMKDVSNKISEEMEKIWVPH 120
+A+L + LI+ + + K + S + ++ NK+ EE E + +PH
Sbjct: 369 QAQLNALHKELIKSFFDASNEFPSDTPFKESSSIKINELVNKMREEGESLSLPH 422
>SPCC188.03 |cnd3||condensin subunit Cnd3 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 875
Score = 25.4 bits (53), Expect = 3.1
Identities = 10/35 (28%), Positives = 22/35 (62%)
Query: 67 EAELRQVFMFLIERLPNEGKQSSVSASLKTNQSTL 101
E ++R + +FL++ P+ + SV +++ + STL
Sbjct: 156 ENDVRNILLFLLQNDPSSEVRRSVLLNIEVSNSTL 190
>SPAC140.04 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 295
Score = 25.0 bits (52), Expect = 4.1
Identities = 13/38 (34%), Positives = 20/38 (52%)
Query: 83 NEGKQSSVSASLKTNQSTLMKDVSNKISEEMEKIWVPH 120
N GK+S + S K+N + L + + K E EK + H
Sbjct: 2 NVGKKSEIQVSAKSNLNFLNELIEEKKRYEDEKRKISH 39
>SPBC16A3.11 |eso1||sister chromatid cohesion protein
Eso1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 872
Score = 25.0 bits (52), Expect = 4.1
Identities = 10/24 (41%), Positives = 14/24 (58%)
Query: 3 DVSVEFIIEAASKCLNAINPSLKV 26
D+S +FI+EA SK L + V
Sbjct: 411 DISTQFIVEATSKLLRQLQQEFDV 434
>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 4196
Score = 25.0 bits (52), Expect = 4.1
Identities = 13/43 (30%), Positives = 20/43 (46%)
Query: 6 VEFIIEAASKCLNAINPSLKVPQKLPKGISHRIEVAAQIASFC 48
+ FI E K ++ + P+L SHR V++ I S C
Sbjct: 390 INFITEDLLKLISRLLPALGALSLSNVDFSHRTAVSSDILSLC 432
>SPBP4G3.03 |||PI31 proteasome regulator related|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 241
Score = 24.2 bits (50), Expect = 7.1
Identities = 14/38 (36%), Positives = 20/38 (52%), Gaps = 5/38 (13%)
Query: 21 NPSLKVPQKLPKGISHRIEVAAQIASFCKDLGYKNDVG 58
NP + Q LP G+ HR + A C+ LG+ +VG
Sbjct: 152 NPHAFLAQDLPHGLPHR-----RAALPCEALGFHPNVG 184
>SPAC14C4.02c |smc5|spr18|Smc5-6 complex SMC subunit Smc5
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1065
Score = 24.2 bits (50), Expect = 7.1
Identities = 16/38 (42%), Positives = 21/38 (55%), Gaps = 2/38 (5%)
Query: 79 ERLPNEGKQSSVSASLKTNQSTLMKDVSNKISEEMEKI 116
E L N+ + S SLK Q L K+V+ I +E EKI
Sbjct: 184 EILQNKNQGQSTLNSLKDRQQALEKEVN--IFKEREKI 219
>SPAC30D11.04c |nup124||nucleoporin Nup124|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1159
Score = 24.2 bits (50), Expect = 7.1
Identities = 14/46 (30%), Positives = 22/46 (47%)
Query: 11 EAASKCLNAINPSLKVPQKLPKGISHRIEVAAQIASFCKDLGYKND 56
E + K LN+++PS + +KL H+I AS L +D
Sbjct: 133 ELSLKSLNSLHPSSALSKKLGSTSQHQIATPKSSASLLNILRSLHD 178
Database: spombe
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.316 0.130 0.374
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 576,365
Number of Sequences: 5004
Number of extensions: 20436
Number of successful extensions: 80
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 72
Number of HSP's gapped (non-prelim): 11
length of query: 135
length of database: 2,362,478
effective HSP length: 66
effective length of query: 69
effective length of database: 2,032,214
effective search space: 140222766
effective search space used: 140222766
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 49 (23.8 bits)
- SilkBase 1999-2023 -