GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001221-TA|BGIBMGA001221-PA|IPR008530|Protein of unknown
function DUF812
         (135 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_0506 - 19794383-19794670,19795066-19795140,19795337-197987...    29   1.3  
03_01_0005 + 46370-46454,46962-47071,47381-47545,47672-48463,487...    28   2.2  
07_03_1632 + 28271559-28271645,28272641-28272713,28273030-282733...    28   3.0  
12_01_1088 + 11298966-11299086,11299104-11299189,11299298-112993...    27   5.2  
02_01_0385 + 2783387-2783695,2784149-2785082,2785206-2785309,278...    27   5.2  
01_05_0409 - 21896478-21897005,21897098-21897292,21897405-218975...    27   6.8  

>12_02_0506 -
           19794383-19794670,19795066-19795140,19795337-19798704,
           19799503-19799671,19799758-19799850
          Length = 1330

 Score = 29.1 bits (62), Expect = 1.3
 Identities = 22/89 (24%), Positives = 40/89 (44%), Gaps = 2/89 (2%)

Query: 30  LPKGISHRIEVAAQIASF--CKDLGYKNDVGYQTFLYYNEAELRQVFMFLIERLPNEGKQ 87
           LPK    R+    ++ +      L  K + G++     +   LR+VF+F +E + N  + 
Sbjct: 775 LPKPALSRVPHIGRLTNLRELNGLSVKKEEGHKISELKDLKNLRKVFVFDVENVSNCSEA 834

Query: 88  SSVSASLKTNQSTLMKDVSNKISEEMEKI 116
           S    S K +   L  + SN+ +   E+I
Sbjct: 835 SLAELSNKNDMELLSLEWSNQHNRINERI 863


>03_01_0005 + 46370-46454,46962-47071,47381-47545,47672-48463,
            48730-48840,48935-49195,49415-49638,49735-49855,
            50673-51214,51302-51488,51569-51895,52047-52197,
            52287-52424,52918-53013,53276-53357,54411-54679,
            54769-54882,55050-55288,55488-55715,55799-55951,
            56479-56616,57061-57188,57598-57718,58142-58306,
            59486-59633,59772-59898,60025-60118,60119-60268,
            60577-60624,60712-60819,61040-61114,61225-61275,
            61341-61487,61584-61714,61944-62031,62204-62266,
            62336-62582,62830-62981,63056-63126,63214-63370,
            63520-63687
          Length = 2323

 Score = 28.3 bits (60), Expect = 2.2
 Identities = 15/37 (40%), Positives = 25/37 (67%), Gaps = 1/37 (2%)

Query: 65   YNEAELRQVFMFLIERLPNEGKQSSVSASLKTNQSTL 101
            ++E+ LR +F+ +IE L N G ++SV A L+  +S L
Sbjct: 1539 FSESTLRSIFVDIIESLENAG-ENSVLAILRCVRSVL 1574


>07_03_1632 + 28271559-28271645,28272641-28272713,28273030-28273361,
            28273455-28274791,28275451-28275848,28275963-28277644,
            28277727-28277884,28278645-28278802,28279110-28279270,
            28279826-28280014
          Length = 1524

 Score = 27.9 bits (59), Expect = 3.0
 Identities = 19/68 (27%), Positives = 31/68 (45%), Gaps = 3/68 (4%)

Query: 41   AAQIASFCKDLGYKNDVGYQTFLYYNEAELRQVFMFLIERLPNEGKQSSVSASLKTNQST 100
            AA +A  C ++ Y     Y+   Y   ++ RQ+   +++  P E   SS S     N + 
Sbjct: 1370 AAALAYKCVEVAYLKAAYYK---YPTASKDRQMLQAIVQNPPGESPSSSASDIDNLNNNG 1426

Query: 101  LMKDVSNK 108
            L K  S+K
Sbjct: 1427 LSKGPSSK 1434


>12_01_1088 +
          11298966-11299086,11299104-11299189,11299298-11299379,
          11300817-11301202
          Length = 224

 Score = 27.1 bits (57), Expect = 5.2
 Identities = 13/37 (35%), Positives = 21/37 (56%)

Query: 2  CDVSVEFIIEAASKCLNAINPSLKVPQKLPKGISHRI 38
          C  S++ ++ A +K  NA++  L V  K+P   S RI
Sbjct: 42 CQSSLKALVFAQAKTTNALSKKLAVNDKVPASESGRI 78


>02_01_0385 +
           2783387-2783695,2784149-2785082,2785206-2785309,
           2785402-2785486,2785517-2787578,2787732-2787753,
           2788157-2788327,2791473-2791517,2792558-2793874,
           2793962-2794012,2794090-2794188,2794352-2794504,
           2794554-2794571
          Length = 1789

 Score = 27.1 bits (57), Expect = 5.2
 Identities = 17/48 (35%), Positives = 24/48 (50%), Gaps = 3/48 (6%)

Query: 76  FLIERLPNEGKQSSVSASLKTNQSTLMKDVSNKISEEMEKIWVPHCCK 123
           FL+  LPN     S   +LKT   T    VS+K+ +  E + +  CCK
Sbjct: 756 FLLRDLPNSIFNMS---TLKTVDGTFTYLVSSKVEKLRENLKLEGCCK 800


>01_05_0409 -
          21896478-21897005,21897098-21897292,21897405-21897542,
          21897641-21897728,21897837-21897925,21898032-21898553
          Length = 519

 Score = 26.6 bits (56), Expect = 6.8
 Identities = 10/22 (45%), Positives = 15/22 (68%)

Query: 11 EAASKCLNAINPSLKVPQKLPK 32
          EAAS+C+N   P + + Q+ PK
Sbjct: 35 EAASRCINGARPGILLLQQSPK 56


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.316    0.130    0.374 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,303,965
Number of Sequences: 37544
Number of extensions: 109153
Number of successful extensions: 303
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 299
Number of HSP's gapped (non-prelim): 7
length of query: 135
length of database: 14,793,348
effective HSP length: 75
effective length of query: 60
effective length of database: 11,977,548
effective search space: 718652880
effective search space used: 718652880
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 55 (26.2 bits)