GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001221-TA|BGIBMGA001221-PA|IPR008530|Protein of unknown
function DUF812
         (135 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325104-1|ABD14118.1|  180|Apis mellifera complementary sex det...    23   1.5  
AY569694-1|AAS86647.1|  400|Apis mellifera complementary sex det...    21   3.5  
DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride c...    21   4.6  
DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    21   4.6  
AY569697-1|AAS86650.1|  413|Apis mellifera complementary sex det...    21   4.6  
AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex det...    21   4.6  
AY352276-1|AAQ67417.1|  385|Apis mellifera complementary sex det...    21   4.6  
AY350615-1|AAQ57657.1|  410|Apis mellifera complementary sex det...    21   4.6  
AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl sub...    21   4.6  
DQ325105-1|ABD14119.1|  180|Apis mellifera complementary sex det...    21   6.1  

>DQ325104-1|ABD14118.1|  180|Apis mellifera complementary sex
           determiner protein.
          Length = 180

 Score = 22.6 bits (46), Expect = 1.5
 Identities = 9/21 (42%), Positives = 11/21 (52%)

Query: 53  YKNDVGYQTFLYYNEAELRQV 73
           Y ND  Y   LYYN   + Q+
Sbjct: 96  YNNDNNYNKKLYYNINYIEQI 116


>AY569694-1|AAS86647.1|  400|Apis mellifera complementary sex
           determiner protein.
          Length = 400

 Score = 21.4 bits (43), Expect = 3.5
 Identities = 11/40 (27%), Positives = 22/40 (55%)

Query: 73  VFMFLIERLPNEGKQSSVSASLKTNQSTLMKDVSNKISEE 112
           V +  IE+  NE K+ + S++   N++   +  S++ S E
Sbjct: 184 VLVVNIEKSENESKKYATSSNSLRNRTHGFQHTSSRYSRE 223


>DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 21.0 bits (42), Expect = 4.6
 Identities = 9/19 (47%), Positives = 12/19 (63%)

Query: 110 SEEMEKIWVPHCCKPNEQQ 128
           SE ++ IWVP     NE+Q
Sbjct: 87  SEFIKNIWVPDTFFVNEKQ 105


>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 21.0 bits (42), Expect = 4.6
 Identities = 9/19 (47%), Positives = 12/19 (63%)

Query: 110 SEEMEKIWVPHCCKPNEQQ 128
           SE ++ IWVP     NE+Q
Sbjct: 87  SEFIKNIWVPDTFFVNEKQ 105


>AY569697-1|AAS86650.1|  413|Apis mellifera complementary sex
           determiner protein.
          Length = 413

 Score = 21.0 bits (42), Expect = 4.6
 Identities = 11/40 (27%), Positives = 22/40 (55%)

Query: 73  VFMFLIERLPNEGKQSSVSASLKTNQSTLMKDVSNKISEE 112
           V +  IE+  NE K+ + S++   N++   +  S++ S E
Sbjct: 195 VLVVNIEKSGNESKKYATSSNSLRNRTHGFQHTSSRYSRE 234


>AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex
           determiner protein.
          Length = 418

 Score = 21.0 bits (42), Expect = 4.6
 Identities = 11/40 (27%), Positives = 22/40 (55%)

Query: 73  VFMFLIERLPNEGKQSSVSASLKTNQSTLMKDVSNKISEE 112
           V +  IE+  NE K+ + S++   N++   +  S++ S E
Sbjct: 200 VLVVNIEKSGNESKKYATSSNSLRNRTHGFQHTSSRYSRE 239



 Score = 20.6 bits (41), Expect = 6.1
 Identities = 8/21 (38%), Positives = 11/21 (52%)

Query: 53  YKNDVGYQTFLYYNEAELRQV 73
           Y N+  Y   LYYN   + Q+
Sbjct: 334 YNNNNNYNKKLYYNINYIEQI 354


>AY352276-1|AAQ67417.1|  385|Apis mellifera complementary sex
           determiner protein.
          Length = 385

 Score = 21.0 bits (42), Expect = 4.6
 Identities = 11/40 (27%), Positives = 22/40 (55%)

Query: 73  VFMFLIERLPNEGKQSSVSASLKTNQSTLMKDVSNKISEE 112
           V +  IE+  NE K+ + S++   N++   +  S++ S E
Sbjct: 195 VLVVNIEKSGNESKKYATSSNSLRNRTHGFQHTSSRYSRE 234


>AY350615-1|AAQ57657.1|  410|Apis mellifera complementary sex
           determiner protein.
          Length = 410

 Score = 21.0 bits (42), Expect = 4.6
 Identities = 11/40 (27%), Positives = 22/40 (55%)

Query: 73  VFMFLIERLPNEGKQSSVSASLKTNQSTLMKDVSNKISEE 112
           V +  IE+  NE K+ + S++   N++   +  S++ S E
Sbjct: 195 VLVVNIEKSGNESKKYATSSNSLRNRTHGFQHTSSRYSRE 234


>AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl
           subunit protein.
          Length = 365

 Score = 21.0 bits (42), Expect = 4.6
 Identities = 9/19 (47%), Positives = 12/19 (63%)

Query: 110 SEEMEKIWVPHCCKPNEQQ 128
           SE ++ IWVP     NE+Q
Sbjct: 26  SEFIKNIWVPDTFFVNEKQ 44


>DQ325105-1|ABD14119.1|  180|Apis mellifera complementary sex
           determiner protein.
          Length = 180

 Score = 20.6 bits (41), Expect = 6.1
 Identities = 8/21 (38%), Positives = 11/21 (52%)

Query: 53  YKNDVGYQTFLYYNEAELRQV 73
           Y N+  Y   LYYN   + Q+
Sbjct: 96  YNNNNNYNKKLYYNINYIEQI 116


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.316    0.130    0.374 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 35,537
Number of Sequences: 429
Number of extensions: 1197
Number of successful extensions: 11
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of query: 135
length of database: 140,377
effective HSP length: 52
effective length of query: 83
effective length of database: 118,069
effective search space:  9799727
effective search space used:  9799727
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)
S2: 40 (20.2 bits)