GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001220-TA|BGIBMGA001220-PA|IPR004689|UDP-galactose
transporter, IPR007271|Nucleotide-sugar transporter
         (365 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292363-1|CAL23175.2|  347|Tribolium castaneum gustatory recept...    24   2.0  
AM292322-1|CAL23134.1|  373|Tribolium castaneum gustatory recept...    24   2.0  

>AM292363-1|CAL23175.2|  347|Tribolium castaneum gustatory receptor
           candidate 42 protein.
          Length = 347

 Score = 23.8 bits (49), Expect = 2.0
 Identities = 27/127 (21%), Positives = 51/127 (40%), Gaps = 7/127 (5%)

Query: 47  IKYVSLIVLTVQNAALGLSMRHAKTRDVEEKFSSAAAVVMAEI--VKLVICICLVMHESG 104
           I Y SL+VL   +     +  + K + +    ++     M  +  V L++    V+ E  
Sbjct: 220 ILYSSLMVLNYIDEVFNNNFGYDKKQYIGVVVANVGVAFMINVGTVTLILSCDAVLEE-- 277

Query: 105 GVKTGVQSMYSTVVLNIKDTVRVCVPSFLYILQNNLLYVSAANLDAATYQVTYQLKLLTT 164
            VKT +   Y   +  +    +  +  F+ ++ NN    SAA   +       Q+    T
Sbjct: 278 -VKTTLLLAYK--IRQVFPNEKKNISEFINVVLNNYPDFSAAGFFSINKTTLLQIIGNVT 334

Query: 165 AFFAVIV 171
            FF +I+
Sbjct: 335 TFFIIII 341


>AM292322-1|CAL23134.1|  373|Tribolium castaneum gustatory receptor
           candidate 1 protein.
          Length = 373

 Score = 23.8 bits (49), Expect = 2.0
 Identities = 10/25 (40%), Positives = 15/25 (60%)

Query: 309 KGFATSVAIIISCVVSMYLFSFVLT 333
           K F T VA ++ C V+ +  S +LT
Sbjct: 41  KSFCTFVAALVYCSVTFFALSELLT 65


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.323    0.135    0.387 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 75,356
Number of Sequences: 317
Number of extensions: 3005
Number of successful extensions: 6
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 5
Number of HSP's gapped (non-prelim): 2
length of query: 365
length of database: 114,650
effective HSP length: 58
effective length of query: 307
effective length of database: 96,264
effective search space: 29553048
effective search space used: 29553048
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (22.0 bits)
S2: 44 (21.8 bits)