GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001220-TA|BGIBMGA001220-PA|IPR004689|UDP-galactose
transporter, IPR007271|Nucleotide-sugar transporter
         (365 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1795.03 |gms1||UDP-galactose transporter Gms1|Schizosaccharo...   239   6e-64
SPAC12G12.12 |||NST UDP-galactose transporter|Schizosaccharomyce...    38   0.003
SPBPB2B2.01 |||amino acid permease, unknown 12|Schizosaccharomyc...    28   2.4  
SPAC1805.13 |rpl14||60S ribosomal protein L14|Schizosaccharomyce...    26   7.3  
SPBC1734.09 |||NST UDP-N-acetylglucosamine transporter|Schizosac...    26   7.3  
SPBC577.13 |syj2||inositol-polyphosphate 5-phosphatase |Schizosa...    26   9.6  
SPAC1F8.03c |str3||siderophore-iron transporter Str3 |Schizosacc...    26   9.6  

>SPCC1795.03 |gms1||UDP-galactose transporter
           Gms1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 353

 Score =  239 bits (584), Expect = 6e-64
 Identities = 125/318 (39%), Positives = 201/318 (63%), Gaps = 10/318 (3%)

Query: 47  IKYVSLIVLTVQNAALGLSMRHAKTRDV--EEKFSSAAAVVMAEIVKLVICICLVMHESG 104
           +KY++L++LTVQN+AL L++ +++      ++++ ++ AV++ E++KLV+C  +  H+  
Sbjct: 15  MKYIALVLLTVQNSALILTLNYSRIMPGYDDKRYFTSTAVLLNELIKLVVCFSVGYHQFR 74

Query: 105 GVKTGVQSMYSTVVLNI--KDTVRVCVPSFLYILQNNLLYVSAANLDAATYQVTYQLKLL 162
               G ++     +  I   D+ ++ +P+FLY  QNNL YV+A NL AA++QVTYQLK+L
Sbjct: 75  K-NVGKEAKLRAFLPQIFGGDSWKLAIPAFLYTCQNNLQYVAAGNLTAASFQVTYQLKIL 133

Query: 163 TTAFFAVIVLKRQLKKWQWXXXXXXXXXXXXXQLSSTDAKSSNSGDKLKQSKLIGFSAAL 222
           TTA F++++L R+L   +W             QL + ++    S   +  + + GFSA L
Sbjct: 134 TTAIFSILLLHRRLGPMKWFSLFLLTGGIAIVQLQNLNSDDQMSAGPM--NPVTGFSAVL 191

Query: 223 AACFISGFAGIYFEKVLKESDISVWMRNVQLSLLSLPFGTGTYLIQEG---TLNNMFKGF 279
            AC ISG AG+YFEKVLK+++ S+W+RNVQLS  SL     T L+++      N  F G+
Sbjct: 192 VACLISGLAGVYFEKVLKDTNPSLWVRNVQLSFFSLFPCLFTILMKDYHNIAENGFFFGY 251

Query: 280 DGFIWYLVILQAAGGLIVAVVVKYADNILKGFATSVAIIISCVVSMYLFSFVLTVQFAFG 339
           +  +W  ++LQA GG+IVA+ V +ADNI+K F+TS++IIIS + S+YL  F +++ F  G
Sbjct: 252 NSIVWLAILLQAGGGIIVALCVAFADNIMKNFSTSISIIISSLASVYLMDFKISLTFLIG 311

Query: 340 TAMVIGSIFLYGYVPKKP 357
             +VI + FLY     KP
Sbjct: 312 VMLVIAATFLYTKPESKP 329


>SPAC12G12.12 |||NST UDP-galactose transporter|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 324

 Score = 37.5 bits (83), Expect = 0.003
 Identities = 33/131 (25%), Positives = 57/131 (43%), Gaps = 4/131 (3%)

Query: 52  LIVLTVQNAALGLSMRHAKTRDVEEKFSSAAAVVMAEIVKLVICICL-VMHESGGVKTGV 110
           +I+LT   A   LS       +  E   S A +    I     C+   V+++      G 
Sbjct: 5   IIMLTSGVANTVLSKYQDSIAEESEPIKSMAVLQSLNIFLGEACLWFYVLYKRHSQGPGY 64

Query: 111 QSMYSTVVLNIKDTVRVCVPSFLYILQNNLLYVSAANLDAATYQVTYQLKLLTTAFFAVI 170
           +S+     L +K  V + +P+ + I  + L+ V      A+ YQ+T    ++  A FA  
Sbjct: 65  ESLDH---LPLKHKVFMALPAIMDICGSTLMNVGLLYTSASIYQMTRGSLIIFVALFATT 121

Query: 171 VLKRQLKKWQW 181
           +LKR + + QW
Sbjct: 122 LLKRTIGQLQW 132


>SPBPB2B2.01 |||amino acid permease, unknown 12|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 585

 Score = 27.9 bits (59), Expect = 2.4
 Identities = 16/70 (22%), Positives = 29/70 (41%), Gaps = 1/70 (1%)

Query: 263 GTYLIQEGTLNNMFKGFDGFIWYLVILQAAGGLIVAVVVKYADNILKGFATSVAIIISCV 322
           GT++ +E    + FKGF   ++       +G   V V     +N  K F  +V   +  +
Sbjct: 256 GTHIFRENAFRHKFKGFCA-VFTSAAFSFSGTEYVGVAAAETENPAKAFPVAVRQTLFRI 314

Query: 323 VSMYLFSFVL 332
              Y+ S  +
Sbjct: 315 AIFYILSLFI 324


>SPAC1805.13 |rpl14||60S ribosomal protein L14|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 134

 Score = 26.2 bits (55), Expect = 7.3
 Identities = 13/58 (22%), Positives = 30/58 (51%)

Query: 35  SQSPNKRVKFGYIKYVSLIVLTVQNAALGLSMRHAKTRDVEEKFSSAAAVVMAEIVKL 92
           S+ P + +++G +    +++   + A  G+  +  K +DV  K++S+A     E  K+
Sbjct: 44  SEFPRQVIRYGSVVLTHIVMKLPRGARSGIVAKKWKAQDVCNKWASSAWAKKLEAKKV 101


>SPBC1734.09 |||NST UDP-N-acetylglucosamine
           transporter|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 316

 Score = 26.2 bits (55), Expect = 7.3
 Identities = 36/153 (23%), Positives = 55/153 (35%), Gaps = 12/153 (7%)

Query: 216 IGFSAALAACFISGFAGIYFEKVLKESDISVWMRNVQLS-LLSLPFGTGTYLIQEGTLNN 274
           IGF+  +    +    G+  E   +    S W  ++  +  LSLPF            N+
Sbjct: 156 IGFTILVITQILGAIMGLVLENTYRIYG-SDWRESLFYTHALSLPFFLFLLRPIRSQWND 214

Query: 275 MF----KGFDGF---IWYLVILQAAGGLIVAVVVKYADN---ILKGFATSVAIIISCVVS 324
           +F    KGF      +WYL     A    V  V         +      +V   +S  +S
Sbjct: 215 LFAIHTKGFLNLPSGVWYLCFNTLAQYFCVRGVNALGAETSALTVSVVLNVRKFVSLCLS 274

Query: 325 MYLFSFVLTVQFAFGTAMVIGSIFLYGYVPKKP 357
           + LF   +     FG  +V GS  +Y     KP
Sbjct: 275 LILFENEMGPAVKFGALLVFGSSAVYASARSKP 307


>SPBC577.13 |syj2||inositol-polyphosphate 5-phosphatase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 889

 Score = 25.8 bits (54), Expect = 9.6
 Identities = 16/59 (27%), Positives = 27/59 (45%), Gaps = 1/59 (1%)

Query: 296 IVAVVVKYADNILK-GFATSVAIIISCVVSMYLFSFVLTVQFAFGTAMVIGSIFLYGYV 353
           +  +  KYA  I K     S  II    +S+  F  +   +  FG   ++G++ L+ YV
Sbjct: 12  VAFITEKYAAIIQKPSVKDSDCIITFTCISLEEFEKIKEYELLFGGEKILGTLGLFNYV 70


>SPAC1F8.03c |str3||siderophore-iron transporter Str3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 630

 Score = 25.8 bits (54), Expect = 9.6
 Identities = 15/57 (26%), Positives = 29/57 (50%), Gaps = 2/57 (3%)

Query: 295 LIVAVVVKYADNILKGFA--TSVAIIISCVVSMYLFSFVLTVQFAFGTAMVIGSIFL 349
           +  A++      IL  F+  TS  +  + V+  Y+  F++    +  +A VIGS+F+
Sbjct: 127 IATAIISSVCKPILGKFSDITSRPMTYTLVLLFYVIGFIVVASSSTISAYVIGSVFI 183


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.323    0.135    0.387 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,476,244
Number of Sequences: 5004
Number of extensions: 55495
Number of successful extensions: 160
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 151
Number of HSP's gapped (non-prelim): 9
length of query: 365
length of database: 2,362,478
effective HSP length: 74
effective length of query: 291
effective length of database: 1,992,182
effective search space: 579724962
effective search space used: 579724962
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (22.0 bits)
S2: 54 (25.8 bits)