Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001220-TA|BGIBMGA001220-PA|IPR004689|UDP-galactose
transporter, IPR007271|Nucleotide-sugar transporter
(365 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_0269 - 18991203-18991307,18991448-18991525,18992724-189929... 118 1e-26
07_03_0984 - 23131468-23131679,23132082-23132209,23132300-231323... 115 5e-26
01_06_1675 + 39078774-39078890,39079607-39079723,39079950-390800... 101 7e-22
04_04_0335 - 24491000-24491003,24491636-24491670,24491875-244919... 93 4e-19
02_04_0529 + 23697249-23697419,23697610-23697726,23698292-236983... 61 2e-09
02_04_0318 - 21999640-21999705,21999706-21999768,21999822-219998... 46 6e-05
12_02_1256 - 27366282-27368021 31 1.5
12_01_0167 - 1250619-1250699,1250824-1250910,1250992-1251110,125... 30 2.5
02_05_0958 + 33073302-33073442,33073839-33073913,33074382-330744... 29 4.4
11_01_0165 - 1349319-1349399,1349523-1349609,1349691-1349809,134... 29 7.8
>06_03_0269 -
18991203-18991307,18991448-18991525,18992724-18992910,
18993096-18993265,18994228-18994306,18995006-18995220,
18995346-18995429,18995732-18995734
Length = 306
Score = 118 bits (283), Expect = 1e-26
Identities = 70/231 (30%), Positives = 125/231 (54%), Gaps = 13/231 (5%)
Query: 129 VPSFLYILQNNLLYVSAANLDAATYQVTYQLKLLTTAFFAVIVLKRQLKKWQWXXXXXXX 188
VPS +Y++ NN+ + + +D +TYQ+ LK++TT +VLKR+L QW
Sbjct: 61 VPSVIYLIHNNVQFATLTYVDPSTYQIMGNLKIVTTGILFRLVLKRKLSNLQWMAVVLLA 120
Query: 189 XXXXXXQLSST-DAKSSNSGDKLKQSKLIGFSAALAACFISGFAGIYFEKVLKESDISVW 247
Q+ DA + Q ++G L+AC +S AG+Y E ++K+++ S++
Sbjct: 121 VGTTTSQVKGCGDAPCDSLFSAPFQGYMLGI---LSAC-LSALAGVYTEYLMKKNNDSLY 176
Query: 248 MRNVQLSLLSLPFGTGTYL-------IQEGTL-NNMFKGFDGFIWYLVILQAAGGLIVAV 299
+NVQL + F G + + G +F G+ W +V + GL+V+
Sbjct: 177 WQNVQLYTFGVIFNMGWLIYGDFKAGFERGPWWQRLFNGYSITTWMVVFNLGSTGLLVSW 236
Query: 300 VVKYADNILKGFATSVAIIISCVVSMYLFSFVLTVQFAFGTAMVIGSIFLY 350
++KY+DNI+K ++TS+A++++ V+S+YLF+ T+Q G + I S+ +Y
Sbjct: 237 LMKYSDNIVKVYSTSMAMLLTMVLSVYLFNVRATLQLFLGIVICIISLQMY 287
>07_03_0984 -
23131468-23131679,23132082-23132209,23132300-23132365,
23134421-23134515,23135292-23135340,23135428-23135487,
23135580-23135701,23135799-23135840,23135944-23135992,
23136095-23136166,23136638-23136738,23136835-23136910,
23137002-23137081,23137196-23137307,23137391-23137454,
23137540-23137603,23138544-23138570
Length = 472
Score = 115 bits (277), Expect = 5e-26
Identities = 69/216 (31%), Positives = 120/216 (55%), Gaps = 11/216 (5%)
Query: 129 VPSFLYILQNNLLYVSAANLDAATYQVTYQLKLLTTAFFAVIVLKRQLKKWQWXXXXXXX 188
+P+ LY+++N L Y A +DA YQ+ L +++T I+LK++L + QW
Sbjct: 129 IPAILYMVKNLLQYYIFAYVDAPAYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLC 188
Query: 189 XXXXXXQLSSTDAKSSNSGDKLKQSKLIGFSAALAACFISGFAGIYFEKVLKESDI-SVW 247
QL+ S D + Q+ + G+ A+ +SGFAG+Y E ++K+ ++
Sbjct: 189 AGCTTAQLNP-------SSDHVLQTPIQGWVMAIVMALLSGFAGVYTEAIIKKRPSRNIN 241
Query: 248 MRNVQLSLLSLPFGTGTYLIQE--GTLNNMFKGFDGFIWYLVILQ-AAGGLIVAVVVKYA 304
++N L + + F +Q+ +N F FI L+IL A G+ V++V+KYA
Sbjct: 242 VQNFWLYIFGMLFNLVAICVQDFDAVMNKGFFHGYSFITVLMILNHALSGIAVSMVMKYA 301
Query: 305 DNILKGFATSVAIIISCVVSMYLFSFVLTVQFAFGT 340
DNI+K ++TSVA++++ VVS++LF F L++ F G+
Sbjct: 302 DNIVKVYSTSVAMLLTAVVSVFLFGFHLSLAFFLGS 337
>01_06_1675 +
39078774-39078890,39079607-39079723,39079950-39080006,
39080340-39080417,39080553-39080597,39080872-39080931,
39081149-39081271,39081850-39081927,39082056-39082125,
39082612-39082719,39082962-39083095,39083177-39083247,
39083384-39083432,39083507-39083557
Length = 385
Score = 101 bits (243), Expect = 7e-22
Identities = 74/285 (25%), Positives = 130/285 (45%), Gaps = 10/285 (3%)
Query: 73 DVEEKFSSAAAVVMAEIVKLVICICLVMHESGGVKTGVQSMY--STVVLNIKDTVRVCVP 130
D + KFS + + EI K++ I ++ ++ +K G + ST + ++ V + VP
Sbjct: 49 DGKFKFSPVSVNFLTEITKIIFAIIMLCIQARRLKVGEKPFLTVSTFMQAARNNVLLAVP 108
Query: 131 SFLYILQNNLLYVSAANLDAATYQVTYQLKLLTTAFFAVIVLKRQLKKWQWXXXXXXXXX 190
+ Y + N + +V + AT ++ LK+L A ++++R+ QW
Sbjct: 109 ALFYAINNYMKFVMQLYFNPATVKMLGNLKVLVIAVLLKVIMRRRFSTIQWEALALLLIG 168
Query: 191 XXXXQLSSTDAKSSNSGDKLKQSKLIGFSAALAACFISGFAGIYFEKVLKES-DISVWMR 249
QL S SS G + + L + A +Y EK LK D S++++
Sbjct: 169 ISVNQLKSLPEGSSTLGLPVAAG---AYLYTLFFVTVPALASVYNEKALKSQFDTSIYLQ 225
Query: 250 NVQLSLLSLPFG----TGTYLIQEGTLNNMFKGFDGFIWYLVILQAAGGLIVAVVVKYAD 305
N+ L F T +IQ + N+ +G +L+ AA G++ + KYAD
Sbjct: 226 NLFLYGYGAIFNFLGLVITAIIQGPSSFNILEGHSKATMFLICNNAAQGILSSFFFKYAD 285
Query: 306 NILKGFATSVAIIISCVVSMYLFSFVLTVQFAFGTAMVIGSIFLY 350
ILK +++++A I + V S LF LT+ F ++VI S+ Y
Sbjct: 286 TILKKYSSTIATIFTGVASAVLFGHTLTINFVLAISIVIISMHQY 330
>04_04_0335 -
24491000-24491003,24491636-24491670,24491875-24491923,
24492043-24492119,24492207-24492340,24492471-24492578,
24493145-24493214,24493399-24493476,24493592-24493714,
24494238-24494297,24494424-24494468,24494936-24495013,
24495298-24495354,24495623-24495739,24495856-24496026
Length = 401
Score = 92.7 bits (220), Expect = 4e-19
Identities = 70/282 (24%), Positives = 126/282 (44%), Gaps = 10/282 (3%)
Query: 73 DVEEKFSSAAAVVMAEIVKLVICICLVMHESGGVKTGVQSMYS--TVVLNIKDTVRVCVP 130
D + +FS + + E+ K++ I +++ +S K G + + S T V ++ + VP
Sbjct: 67 DGKFQFSPISVNFLTEVTKVIFAIVMLIIQSRKQKVGEKPLLSLSTFVQAARNNALLAVP 126
Query: 131 SFLYILQNNLLYVSAANLDAATYQVTYQLKLLTTAFFAVIVLKRQLKKWQWXXXXXXXXX 190
+ LY + N L ++ AT ++ LK+L A +++R+ QW
Sbjct: 127 ALLYAINNYLKFIMQLYFSPATVKMLSNLKVLVIAILLKFIMRRKFSIIQWEALALLLIG 186
Query: 191 XXXXQLSSTDAKSSNSGDKLKQSKLIGFSAALAACFISGFAGIYFEKVLKES-DISVWMR 249
QLSS + + G + I + L + A +Y E LK D S++++
Sbjct: 187 ISVNQLSSIPDGTKSFGLAVTT---IAYIYTLIFVTVPSLASVYNEYALKSQFDTSIYLQ 243
Query: 250 NVQLSLLSLPFG----TGTYLIQEGTLNNMFKGFDGFIWYLVILQAAGGLIVAVVVKYAD 305
N+ L F GT + Q ++ +G +L+ AA G++ + KYAD
Sbjct: 244 NLFLYGYGAIFNFLGILGTVIFQGPESFDILRGHSRATMFLICNNAAQGILSSFFFKYAD 303
Query: 306 NILKGFATSVAIIISCVVSMYLFSFVLTVQFAFGTAMVIGSI 347
ILK ++++VA I + + S LTV F G ++V S+
Sbjct: 304 TILKKYSSTVATIFTGLASAAFLGHTLTVNFLLGISIVFISM 345
>02_04_0529 +
23697249-23697419,23697610-23697726,23698292-23698348,
23698539-23698616,23698722-23698766,23698858-23698917,
23699340-23699417,23699524-23699646,23699772-23699849,
23700048-23700117,23700317-23700424,23700543-23700676,
23700756-23700832,23701027-23701075,23701689-23701697
Length = 417
Score = 60.9 bits (141), Expect = 2e-09
Identities = 70/308 (22%), Positives = 127/308 (41%), Gaps = 36/308 (11%)
Query: 73 DVEEKFSSAAAVVMAEIVKLVICICLVMHESGGVKTGVQSMY--STVVLNIKDTVRVCVP 130
D + +FS + + E+ K+V I +++ +S K G + + ST + ++ + VP
Sbjct: 67 DGKFQFSPISVNFLTEVTKVVFAIVMLIIQSRKQKVGEKPLLARSTFIQAARNNALLAVP 126
Query: 131 SFLYILQNNLLYVSAANLDAATYQ---------VTYQLKLLTTAFFAVI---------VL 172
+ LY + N L ++ + +T + + LK + F+VI V
Sbjct: 127 ALLYAINNYLKFIMQLYFNPSTVKMLSNLKVLVIAVLLKFIMKRRFSVIQNCHVLSFNVD 186
Query: 173 KRQLKKW--------QWXXXXXXXXXXXXXQLSSTDAKSSNSGDKLKQSKLIGFSAALAA 224
L+ +W QL + A ++ G + I + L
Sbjct: 187 DHNLQSGLLVTHYVTEWEALALLLIGISINQLRTVPAGNTAFGLPVTA---IAYIYTLIF 243
Query: 225 CFISGFAGIYFEKVLKES-DISVWMRNVQLSLLSLPFG----TGTYLIQEGTLNNMFKGF 279
+ A +Y E LK D S++++N+ L F GT L Q N+ +G
Sbjct: 244 VTVPSLASVYNEYALKSQYDTSIYLQNLFLYGYGAIFNFLGILGTALFQGPESFNILRGH 303
Query: 280 DGFIWYLVILQAAGGLIVAVVVKYADNILKGFATSVAIIISCVVSMYLFSFVLTVQFAFG 339
+L+ AA G++ + KYAD ILK ++++VA I + + S LT+ F G
Sbjct: 304 SRATMFLICNNAAQGILSSFFFKYADTILKKYSSTVATIFTGLASAAFLGHTLTINFLLG 363
Query: 340 TAMVIGSI 347
++V S+
Sbjct: 364 ISVVFISM 371
>02_04_0318 -
21999640-21999705,21999706-21999768,21999822-21999884,
21999938-22000000,22001097-22001141,22001914-22002325,
22003313-22003475,22004086-22004132,22004458-22004564,
22004651-22004684,22004754-22004807,22005599-22005723
Length = 413
Score = 45.6 bits (103), Expect = 6e-05
Identities = 25/59 (42%), Positives = 39/59 (66%), Gaps = 1/59 (1%)
Query: 115 STVVLNIKDT-VRVCVPSFLYILQNNLLYVSAANLDAATYQVTYQLKLLTTAFFAVIVL 172
+T+VL+I+ V + V SF + +N+LL +S NLD+ T+ + Q KLL TAFF ++L
Sbjct: 48 TTLVLSIEVAKVWLYVQSFYWWQKNSLLQISYKNLDSLTFSILNQTKLLFTAFFTYLIL 106
>12_02_1256 - 27366282-27368021
Length = 579
Score = 31.1 bits (67), Expect = 1.5
Identities = 21/69 (30%), Positives = 37/69 (53%), Gaps = 5/69 (7%)
Query: 286 LVILQAAGGLIVAVVVK---YADNILKGFATSVA--IIISCVVSMYLFSFVLTVQFAFGT 340
+++L A G L++A V YA +++ GF A +I++ V ++ F + T+ GT
Sbjct: 418 VLLLTAPGHLLIAFGVPGSLYAASVVVGFCFGAAQPLILASVSELFGFKYYSTLYNFCGT 477
Query: 341 AMVIGSIFL 349
A +GS L
Sbjct: 478 ASPVGSYIL 486
>12_01_0167 -
1250619-1250699,1250824-1250910,1250992-1251110,
1251200-1251478,1252246-1252660
Length = 326
Score = 30.3 bits (65), Expect = 2.5
Identities = 18/72 (25%), Positives = 39/72 (54%), Gaps = 3/72 (4%)
Query: 283 IWYLVILQAAGGLIVAVVVKYADNILKGFATSVAIIISCVVSMYLFSFVLTVQFAFGTAM 342
+WY+ ++ + G + A + K + +++ + ++L S++LTVQF G A
Sbjct: 68 LWYIPVMISNVGNFTLQMYLQAQS--KNMIVTYLAMLNLGLHLFL-SWLLTVQFHLGLAG 124
Query: 343 VIGSIFLYGYVP 354
V+GS+ + ++P
Sbjct: 125 VMGSMVIAYWIP 136
>02_05_0958 +
33073302-33073442,33073839-33073913,33074382-33074497,
33076863-33076977,33077100-33077228,33078907-33078954,
33079343-33079469,33079634-33079789,33080031-33080287,
33080431-33080580,33080660-33080714,33080793-33081088,
33081252-33081335,33081869-33081941,33082164-33082291,
33082905-33083090,33083179-33083316,33083394-33083519,
33083705-33083965
Length = 886
Score = 29.5 bits (63), Expect = 4.4
Identities = 27/73 (36%), Positives = 35/73 (47%), Gaps = 5/73 (6%)
Query: 26 MDNISKKSHSQSPNKRVKFGYI-KYVSLIVLTVQNAALGLSMRHAKTRDVEEKFSSAAAV 84
+ I KS + PN R K G + +Y+S L V + L + K VE F S V
Sbjct: 39 LSEIFPKSQDEEPNDR-KIGKLCEYISRNPLRVPKITVYLEQKFYKELRVEH-FGS-VKV 95
Query: 85 VMAEIVKLVICIC 97
VMA I + VIC C
Sbjct: 96 VMA-IYRKVICSC 107
>11_01_0165 -
1349319-1349399,1349523-1349609,1349691-1349809,
1349899-1350137,1350240-1350296,1350593-1350679,
1350822-1350955,1350971-1351357
Length = 396
Score = 28.7 bits (61), Expect = 7.8
Identities = 18/67 (26%), Positives = 36/67 (53%), Gaps = 3/67 (4%)
Query: 283 IWYLVILQAAGGLIVAVVVKYADNILKGFATSVAIIISCVVSMYLFSFVLTVQFAFGTAM 342
+WY+ ++ + G + A + K + +++ + ++L S++LTVQF G A
Sbjct: 68 LWYIPVMISNVGNFTLQMYLQAQS--KNMIVTYLAMLNLGLHLFL-SWLLTVQFYLGLAG 124
Query: 343 VIGSIFL 349
V+GS+ L
Sbjct: 125 VMGSMIL 131
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.323 0.135 0.387
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,024,845
Number of Sequences: 37544
Number of extensions: 328678
Number of successful extensions: 746
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 728
Number of HSP's gapped (non-prelim): 14
length of query: 365
length of database: 14,793,348
effective HSP length: 83
effective length of query: 282
effective length of database: 11,677,196
effective search space: 3292969272
effective search space used: 3292969272
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (22.0 bits)
S2: 61 (28.7 bits)
- SilkBase 1999-2023 -