GeneModel BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001220-TA|BGIBMGA001220-PA|IPR004689|UDP-galactose
transporter, IPR007271|Nucleotide-sugar transporter
         (365 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_56941| Best HMM Match : No HMM Matches (HMM E-Value=.)             182   3e-46
SB_24914| Best HMM Match : Nuc_sug_transp (HMM E-Value=3.6e-15)       115   5e-26
SB_4320| Best HMM Match : Nuc_sug_transp (HMM E-Value=5.4e-15)        111   1e-24
SB_58710| Best HMM Match : Nuc_sug_transp (HMM E-Value=2e-21)         103   2e-22
SB_14785| Best HMM Match : Nuc_sug_transp (HMM E-Value=5.1e-15)        58   9e-09
SB_10300| Best HMM Match : Nuc_sug_transp (HMM E-Value=4.6)            49   7e-06
SB_8558| Best HMM Match : Nuc_sug_transp (HMM E-Value=0.011)           40   0.004
SB_37712| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.85 
SB_48805| Best HMM Match : 7tm_1 (HMM E-Value=2.5e-32)                 31   2.0  
SB_51948| Best HMM Match : Cation_efflux (HMM E-Value=0.58)            30   2.6  
SB_9975| Best HMM Match : 7tm_2 (HMM E-Value=1.9e-38)                  29   6.0  
SB_16715| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   7.9  

>SB_56941| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1034

 Score =  182 bits (444), Expect = 3e-46
 Identities = 94/216 (43%), Positives = 133/216 (61%), Gaps = 14/216 (6%)

Query: 155  VTYQLKLLTTAFFAVIVLKRQLKKWQWXXXXXXXXXXXXXQLSSTDAKSSNSGDK----- 209
            VTYQLK+LTTA F+V++L + L + QW             QL S+  KSS++        
Sbjct: 805  VTYQLKILTTALFSVLMLNKSLGRLQWLSLVMLFAGVSIVQLQSSSTKSSSTSQPNATMA 864

Query: 210  ------LKQSKLIGFSAALAACFISGFAGIYFEKVLKESDISVWMRNVQLSLLSLPFGTG 263
                   KQ+ L+GF A + +   SGFAG+YFEK+LK +  SVW+RNVQL   S   G  
Sbjct: 865  PSANLATKQNALLGFGAVVMSSLCSGFAGVYFEKILKGTSGSVWLRNVQLGAYSTVIGLI 924

Query: 264  TYLIQEGTL---NNMFKGFDGFIWYLVILQAAGGLIVAVVVKYADNILKGFATSVAIIIS 320
               + +G        F+G+   +W ++ +QA GGL+VAVVVKYADNILKGFATS +I++S
Sbjct: 925  GMQLNDGAKIAEKGFFQGYSSLVWSVICMQAFGGLLVAVVVKYADNILKGFATSFSIVLS 984

Query: 321  CVVSMYLFSFVLTVQFAFGTAMVIGSIFLYGYVPKK 356
            C+VS+YLF+F  ++QF  G A+V  +I+LY   P++
Sbjct: 985  CIVSIYLFAFHASLQFVVGAALVCTAIYLYSTPPQQ 1020


>SB_24914| Best HMM Match : Nuc_sug_transp (HMM E-Value=3.6e-15)
          Length = 979

 Score =  115 bits (277), Expect = 5e-26
 Identities = 55/126 (43%), Positives = 87/126 (69%), Gaps = 1/126 (0%)

Query: 57  VQNAALGLSMRHAKTRDVEEKFSSAAAVVMAEIVKLVICICLVMHESG-GVKTGVQSMYS 115
           +Q + L L+MR+++T  V   + S+ AVV+AE+ K+  C+C++ H++G   +     + S
Sbjct: 195 LQTSTLVLTMRYSRTVSVGPVYISSTAVVLAEVFKVFACLCVMFHQAGYNWRVFATEIDS 254

Query: 116 TVVLNIKDTVRVCVPSFLYILQNNLLYVSAANLDAATYQVTYQLKLLTTAFFAVIVLKRQ 175
            +     +T+++ VPS LY +QNNLLYV+ +NLDAATYQVTYQLK+LTTA F+V +L ++
Sbjct: 255 EIFKKPLETLKLAVPSGLYTIQNNLLYVALSNLDAATYQVTYQLKILTTALFSVAMLSKK 314

Query: 176 LKKWQW 181
           L   +W
Sbjct: 315 LSSIKW 320


>SB_4320| Best HMM Match : Nuc_sug_transp (HMM E-Value=5.4e-15)
          Length = 220

 Score =  111 bits (266), Expect = 1e-24
 Identities = 56/126 (44%), Positives = 83/126 (65%), Gaps = 11/126 (8%)

Query: 232 GIYFEKVLKESDISVWMRNVQLS-------LLSLPFGTGTYLIQEGTLNNMFKGFDGFIW 284
           G+YFEK LK +   +W RN+QL+       LL + +  G  + Q+G     F G+   ++
Sbjct: 71  GVYFEKTLKATQTPLWARNLQLAFFGAIIALLGVAYNDGAAVKQKG----FFFGYGPLVY 126

Query: 285 YLVILQAAGGLIVAVVVKYADNILKGFATSVAIIISCVVSMYLFSFVLTVQFAFGTAMVI 344
            +V  Q  GGL+V +VVKYADNILKGFA +VAI++SC++S+Y+F F L+V+F  G ++VI
Sbjct: 127 GIVFSQVFGGLLVGIVVKYADNILKGFAAAVAIVLSCIMSVYMFGFKLSVEFVSGASLVI 186

Query: 345 GSIFLY 350
            +I LY
Sbjct: 187 IAIVLY 192



 Score = 35.5 bits (78), Expect = 0.069
 Identities = 20/65 (30%), Positives = 37/65 (56%), Gaps = 1/65 (1%)

Query: 25 NMDNISKKSHSQSPNKRVKFGYIKYVSLIVLTVQNAALGLSMRHAKTRDVEEKFSSAAAV 84
          + DN  +   S  P+       IKY+SL +L +QNA+L L++R+++T    E + ++  V
Sbjct: 7  DQDNRGRAMASPVPDSGNGLFSIKYLSLAILAIQNASLILTIRYSRTIP-GELYIASTVV 65

Query: 85 VMAEI 89
           + E+
Sbjct: 66 AITEV 70


>SB_58710| Best HMM Match : Nuc_sug_transp (HMM E-Value=2e-21)
          Length = 169

 Score =  103 bits (248), Expect = 2e-22
 Identities = 56/163 (34%), Positives = 91/163 (55%), Gaps = 7/163 (4%)

Query: 155 VTYQLKLLTTAFFAVIVLKRQL--KKWQWXXXXXXXXXXXXXQLSSTDAKSSNS--GDKL 210
           +T QLK++TTA F++++L + +  K+W +             +L    A   N    D  
Sbjct: 1   ITNQLKIMTTALFSILLLNKSISRKRWFYLLMLMIGVAVVEIELHRKIAAKMNKKEADAA 60

Query: 211 KQSKLIGFSAALAACFISGFAGIYFEKVLKESDISVWMRNVQLSLLSLPFGTGTYLIQEG 270
            +S LIGF + LAA  ISGFAG++ EK++K    S+W+ NV L    +  G    ++++G
Sbjct: 61  SKSFLIGFLSVLAASVISGFAGVFLEKIVKHKSTSLWIMNVHLYSWGVCLGVLGVVLKDG 120

Query: 271 ---TLNNMFKGFDGFIWYLVILQAAGGLIVAVVVKYADNILKG 310
              +    F G+D  +W +V L +AGG++V++V+KYA  I KG
Sbjct: 121 YQISQLGFFYGYDSVVWTVVALASAGGILVSLVLKYASTITKG 163


>SB_14785| Best HMM Match : Nuc_sug_transp (HMM E-Value=5.1e-15)
          Length = 261

 Score = 58.4 bits (135), Expect = 9e-09
 Identities = 39/148 (26%), Positives = 74/148 (50%), Gaps = 8/148 (5%)

Query: 217 GFSAALAACFISGFAGIYFEKVLKES---DISVWMRNVQLSLLSLPFGTGTYLIQEGTLN 273
           G    L  C +S  A IY EK+ KE    D S++++N +L    + F T   +++    N
Sbjct: 93  GHVLVLIQCLMSSSANIYNEKIFKEGSGMDDSIYLQNSKLYAFGILFNTVPLVLRSDFRN 152

Query: 274 NM-----FKGFDGFIWYLVILQAAGGLIVAVVVKYADNILKGFATSVAIIISCVVSMYLF 328
           ++     F G +   + L+I+ AA GL VA+++K+ DN+ +  +  +  ++    S+   
Sbjct: 153 HVWRCGFFHGHNTQSFLLIIVTAAYGLTVALILKFRDNMFQVMSFQLTNVLIITSSVLFM 212

Query: 329 SFVLTVQFAFGTAMVIGSIFLYGYVPKK 356
            F   ++F     +V+ +IF++    KK
Sbjct: 213 DFHPALEFFLIAPIVLLAIFVFNAGKKK 240


>SB_10300| Best HMM Match : Nuc_sug_transp (HMM E-Value=4.6)
          Length = 66

 Score = 48.8 bits (111), Expect = 7e-06
 Identities = 22/66 (33%), Positives = 41/66 (62%)

Query: 89  IVKLVICICLVMHESGGVKTGVQSMYSTVVLNIKDTVRVCVPSFLYILQNNLLYVSAANL 148
           +VK ++ + +++ E       ++ +YS+     KD + + VP+ +Y +QNNL YV+ +NL
Sbjct: 1   VVKGIVSLVVMLWEKKDPIEWLKYVYSSTFGQTKDMMLMAVPALIYTVQNNLQYVAISNL 60

Query: 149 DAATYQ 154
           DAA +Q
Sbjct: 61  DAAVFQ 66


>SB_8558| Best HMM Match : Nuc_sug_transp (HMM E-Value=0.011)
          Length = 175

 Score = 39.5 bits (88), Expect = 0.004
 Identities = 35/141 (24%), Positives = 66/141 (46%), Gaps = 9/141 (6%)

Query: 222 LAACFISGFAGIYFEKVLK--ESDISVWMRNVQLSLLSLPFGTGTYLIQEGTLNNMFK-- 277
           L   F S FAG+Y E +LK    D  + ++NV + + S+       L+  G+L   F   
Sbjct: 17  LVQVFCSCFAGVYNEYLLKGRSGDAPIMVQNVFMYVDSILCNI-LVLVYGGSLQEAFTKE 75

Query: 278 ---GFDGFIWYLVILQAAG-GLIVAVVVKYADNILKGFATSVAIIISCVVSMYLFSFVLT 333
                  F    +I   AG G++ ++ +K  ++ILK FA+++ ++ + V++  +F   + 
Sbjct: 76  SLLSIMQFKVLGIIANNAGIGIVTSLFLKRLNSILKTFASALELMFTAVLAWIIFGIPIN 135

Query: 334 VQFAFGTAMVIGSIFLYGYVP 354
           +       +V  +  LY   P
Sbjct: 136 ILTFVAIVIVSYATILYSQNP 156


>SB_37712| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 537

 Score = 31.9 bits (69), Expect = 0.85
 Identities = 28/115 (24%), Positives = 54/115 (46%), Gaps = 14/115 (12%)

Query: 252 QLSLLSLPFGTGTY--------LIQEGTL-NNMFKGFDG--FIWYLVILQ---AAGGLIV 297
           ++S + + FGT  +        L+Q G L +++    D   F ++ VIL    A G L +
Sbjct: 325 KMSSMQMMFGTNLFSSIFTFWSLLQNGKLFSSVIFAIDHPEFAYHSVILSLCSATGQLFI 384

Query: 298 AVVVKYADNILKGFATSVAIIISCVVSMYLFSFVLTVQFAFGTAMVIGSIFLYGY 352
              ++    ++     +  +++S V+S  L+   L+ Q  FG  +V  ++FL  Y
Sbjct: 385 FYTIQSFGPVVFTIIMTTRLMLSIVISCILYQHPLSTQAVFGVIVVFTALFLRVY 439


>SB_48805| Best HMM Match : 7tm_1 (HMM E-Value=2.5e-32)
          Length = 427

 Score = 30.7 bits (66), Expect = 2.0
 Identities = 16/60 (26%), Positives = 33/60 (55%), Gaps = 2/60 (3%)

Query: 244 ISVWMRNVQLSLLSLPFGTGTYLIQEGTLNNMFKGFDGFIWYLVILQAAGGLIVAVVVKY 303
           IS+ + N+ +S+L +PF   + +  +    +++    GF+  + +L +A  L VAV+  Y
Sbjct: 70  ISLTLANLLISVLVVPFALASVIFDKWLFGSLWCHTTGFL--MSVLMSASNLSVAVIAVY 127


>SB_51948| Best HMM Match : Cation_efflux (HMM E-Value=0.58)
          Length = 262

 Score = 30.3 bits (65), Expect = 2.6
 Identities = 18/56 (32%), Positives = 31/56 (55%)

Query: 279 FDGFIWYLVILQAAGGLIVAVVVKYADNILKGFATSVAIIISCVVSMYLFSFVLTV 334
           F+G   Y+V L     LI+A V+ Y ++I +  +T+V +I+  V+ +  F    TV
Sbjct: 111 FNGIACYVVWLIYHAMLILAAVLTYREDITEPTSTTVVLILMYVLVLVWFILENTV 166


>SB_9975| Best HMM Match : 7tm_2 (HMM E-Value=1.9e-38)
          Length = 1101

 Score = 29.1 bits (62), Expect = 6.0
 Identities = 23/69 (33%), Positives = 31/69 (44%), Gaps = 2/69 (2%)

Query: 204 SNSGDKLKQSKLIGFSAALAACFISGFAGIYFEKVLKESDISVWMRNVQLSLLSLPFGTG 263
           S+ G K+K   L+G+ A L    IS  A I FE    E    +    V L LL L +  G
Sbjct: 581 SSEGSKMKYYYLLGWGAPLIIVIIS--AAIRFEHYGSEQAAGLKGMVVLLPLLGLTWVFG 638

Query: 264 TYLIQEGTL 272
              + E T+
Sbjct: 639 LMAVDEKTI 647


>SB_16715| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 112

 Score = 28.7 bits (61), Expect = 7.9
 Identities = 12/55 (21%), Positives = 29/55 (52%)

Query: 45 GYIKYVSLIVLTVQNAALGLSMRHAKTRDVEEKFSSAAAVVMAEIVKLVICICLV 99
          GY + ++   L ++N   GL++   +T  V   FS    +++  I+ +++ I ++
Sbjct: 3  GYGERLTAKYLAIENERRGLNLNIGRTECVRSFFSLCVDILLTNIIIVIVIIIII 57


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.323    0.135    0.387 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,106,054
Number of Sequences: 59808
Number of extensions: 352491
Number of successful extensions: 1047
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 1028
Number of HSP's gapped (non-prelim): 14
length of query: 365
length of database: 16,821,457
effective HSP length: 83
effective length of query: 282
effective length of database: 11,857,393
effective search space: 3343784826
effective search space used: 3343784826
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (22.0 bits)
S2: 61 (28.7 bits)