GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001220-TA|BGIBMGA001220-PA|IPR004689|UDP-galactose
transporter, IPR007271|Nucleotide-sugar transporter
         (365 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               26   0.58 
DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase doma...    25   1.4  
DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protei...    24   1.8  
AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139 prot...    23   5.4  
Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1 p...    22   7.2  
DQ435333-1|ABD92648.1|  135|Apis mellifera OBP16 protein.              22   7.2  

>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 25.8 bits (54), Expect = 0.58
 Identities = 13/39 (33%), Positives = 20/39 (51%)

Query: 1   MNPVREGLELEGAPTPETELNPELNMDNISKKSHSQSPN 39
           +N V  G++  G P  ET+   +   DN + KS  + PN
Sbjct: 68  VNFVAGGIQQAGKPKEETDDKDDDESDNENIKSQKEFPN 106


>DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase domain
           protein protein.
          Length = 448

 Score = 24.6 bits (51), Expect = 1.4
 Identities = 21/82 (25%), Positives = 39/82 (47%), Gaps = 4/82 (4%)

Query: 196 LSSTDAKSSNSGDKLKQSKLIGFS-AALAACFISGFAGIYFEKVLKESDISVWMRNVQLS 254
           L +TD     S D L ++K IGFS   +A+   S    +  ++  +E++I   ++ +   
Sbjct: 294 LENTDHTKQLSHDVLLRAKQIGFSDKQIASVVKSSELAVRIQR--QENNIRPMVKQIDTV 351

Query: 255 LLSLPFGTG-TYLIQEGTLNNM 275
               P  T   YL   GT++++
Sbjct: 352 AAEWPATTNYLYLTYNGTVHDV 373


>DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protein
           protein.
          Length = 424

 Score = 24.2 bits (50), Expect = 1.8
 Identities = 8/24 (33%), Positives = 16/24 (66%)

Query: 112 SMYSTVVLNIKDTVRVCVPSFLYI 135
           S++ T+ ++++DT   C  +F YI
Sbjct: 177 SLFVTIAVDVRDTEDKCKDTFAYI 200


>AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139
           protein.
          Length = 232

 Score = 22.6 bits (46), Expect = 5.4
 Identities = 9/28 (32%), Positives = 17/28 (60%)

Query: 279 FDGFIWYLVILQAAGGLIVAVVVKYADN 306
           F  F+ +++++Q A  +   +VVK  DN
Sbjct: 84  FASFLLFILLVQIAVAVYAFIVVKNDDN 111


>Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1
           protein.
          Length = 402

 Score = 22.2 bits (45), Expect = 7.2
 Identities = 15/53 (28%), Positives = 26/53 (49%), Gaps = 7/53 (13%)

Query: 281 GFIWYLVILQAAGGLIVAVVVKYADNILKG----FATSVAI---IISCVVSMY 326
           GF++ ++I  +  G I+  V  Y D  L+     F  S+AI    + C+V  +
Sbjct: 29  GFLFLILIFLSVAGNILVCVAIYTDRGLRRIGNLFLASLAIADLFVGCLVMTF 81


>DQ435333-1|ABD92648.1|  135|Apis mellifera OBP16 protein.
          Length = 135

 Score = 22.2 bits (45), Expect = 7.2
 Identities = 7/25 (28%), Positives = 15/25 (60%)

Query: 89  IVKLVICICLVMHESGGVKTGVQSM 113
           ++   IC+C+       +KTG+Q++
Sbjct: 5   VIIFAICVCVGAMTHEELKTGIQTL 29


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.323    0.135    0.387 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 87,124
Number of Sequences: 429
Number of extensions: 3289
Number of successful extensions: 12
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 8
Number of HSP's gapped (non-prelim): 6
length of query: 365
length of database: 140,377
effective HSP length: 59
effective length of query: 306
effective length of database: 115,066
effective search space: 35210196
effective search space used: 35210196
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (22.0 bits)
S2: 44 (21.8 bits)