GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001219-TA|BGIBMGA001219-
PA|IPR002573|Choline/ethanolamine kinase, IPR011009|Protein
kinase-like
         (343 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC13G7.12c |||choline kinase |Schizosaccharomyces pombe|chr 1|...    62   1e-10
SPAC26A3.11 |||amidohydrolase|Schizosaccharomyces pombe|chr 1|||...    30   0.42 
SPCC417.08 |tef3||translation elongation factor eEF3|Schizosacch...    29   0.96 
SPAC23G3.11 |rpn6||19S proteasome regulatory subunit Rpn6|Schizo...    28   1.7  
SPAC644.06c |cdr1|nim1|GIN4 family protein kinase Cdr1|Schizosac...    28   2.2  
SPBC29A10.10c |||tRNA-splicing endonuclease positive effector |S...    27   5.1  
SPCC663.03 |pmd1||leptomycin efflux transporter Pmd1|Schizosacch...    26   6.8  
SPAC823.12 |||zinc finger protein Pep5/Vps11 |Schizosaccharomyce...    26   6.8  
SPAC23C4.17 |||tRNA |Schizosaccharomyces pombe|chr 1|||Manual          26   9.0  

>SPAC13G7.12c |||choline kinase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 456

 Score = 61.7 bits (143), Expect = 1e-10
 Identities = 51/187 (27%), Positives = 84/187 (44%), Gaps = 24/187 (12%)

Query: 76  NIKTLSARGLAPKLYAVFENGLIYQYFPGDTLNIETVLDIKIWPLVAKQMAKMHRVEL-- 133
           N+K L+   + P L   F NG   QY    TL  +T+ D K+   V +++ ++H   L  
Sbjct: 111 NLKRLARHNIGPYLIGEFSNGRFEQYMESTTLTCKTIRDPKLSIYVGRRLCELHNFILLH 170

Query: 134 GKEVQKDPMVWDKIEQFLSLLPEKFSTEVKHNRFVSS---------FGSVTKLRIEFERL 184
             EV + P  W     +L     K     KH+  ++S         F +     +E+ R 
Sbjct: 171 PHEVLEMPAAWKNCLVWLPKAKAKILGR-KHSLAITSEFMKTLEEDFNAYYNWFVEWSRD 229

Query: 185 KSHLIKTESPIVFAHNDLLLGNVI----------FNKDEGTISFIDYEYASYNYQAFDIA 234
           K      +  +VF+HND   GN++           ++   T+  +D+EYA  N  AFD+A
Sbjct: 230 KKDWFGLK--MVFSHNDTQYGNLLKIKAKKRSIPLSQKHRTLVPVDFEYAGPNLCAFDLA 287

Query: 235 NHFNEFV 241
           N+F E++
Sbjct: 288 NYFAEWM 294


>SPAC26A3.11 |||amidohydrolase|Schizosaccharomyces pombe|chr
          1|||Manual
          Length = 322

 Score = 30.3 bits (65), Expect = 0.42
 Identities = 22/58 (37%), Positives = 27/58 (46%), Gaps = 10/58 (17%)

Query: 41 NVKFKYFVRKGQRSTKPKLAECLFLEVGVHYFLPRNIKTLSARGLAPKLYAVFENGLI 98
          N KF   V+KG RS  P L  C            RNI ++SA  L PK +  F  GL+
Sbjct: 2  NSKFFGLVQKGTRSFFPSLNFCY----------TRNIMSVSASSLVPKDFRAFRIGLV 49


>SPCC417.08 |tef3||translation elongation factor
           eEF3|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1047

 Score = 29.1 bits (62), Expect = 0.96
 Identities = 27/84 (32%), Positives = 40/84 (47%), Gaps = 3/84 (3%)

Query: 122 AKQMAKMHRVELGKEVQKDPMVWDKIEQFLSLLPEKFSTEVKHNRFVS-SFGSVTKLRI- 179
           AK +A++ R E  K  Q  P+V  +IE+  SLL    +  V H+R    S G   KL + 
Sbjct: 857 AKMVAEVDRAEALKSGQFRPLVRKEIEEHCSLLGLD-AELVSHSRIKGLSGGQKVKLVLA 915

Query: 180 EFERLKSHLIKTESPIVFAHNDLL 203
               L+ H+I  + P  +   D L
Sbjct: 916 ACTWLRPHVIVLDEPTNYLDRDSL 939


>SPAC23G3.11 |rpn6||19S proteasome regulatory subunit
           Rpn6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 421

 Score = 28.3 bits (60), Expect = 1.7
 Identities = 17/59 (28%), Positives = 27/59 (45%)

Query: 128 MHRVELGKEVQKDPMVWDKIEQFLSLLPEKFSTEVKHNRFVSSFGSVTKLRIEFERLKS 186
           +++  L K V KD  V ++ EQ L+ L + +  E +HN           L   F + KS
Sbjct: 25  LYKEVLNKGVSKDEKVANEQEQALTNLSDLYVRENRHNDLAQLVQQSRPLMANFSKAKS 83


>SPAC644.06c |cdr1|nim1|GIN4 family protein kinase
           Cdr1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 593

 Score = 27.9 bits (59), Expect = 2.2
 Identities = 20/94 (21%), Positives = 37/94 (39%), Gaps = 1/94 (1%)

Query: 197 FAHNDLLLGNVIFNKDEGTISFIDYEYASYNYQAFDIANHFNEFVGLSIEDSDYQRYPSK 256
           F H DL L N++   +E  I   D+  A+       + N+      L+ E   ++ Y   
Sbjct: 124 FRHRDLKLENILIKVNEQQIKIADFGMATVEPNDSCLENYCGSLHYLAPEIVSHKPYRGA 183

Query: 257 DFQLAWIRVYLSEYLGTMTP-DAKSVDTVYEEVQ 289
              +    V L   L    P   ++ D +Y +++
Sbjct: 184 PADVWSCGVILYSLLSNKLPFGGQNTDVIYNKIR 217


>SPBC29A10.10c |||tRNA-splicing endonuclease positive effector
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1944

 Score = 26.6 bits (56), Expect = 5.1
 Identities = 15/53 (28%), Positives = 25/53 (47%)

Query: 150  FLSLLPEKFSTEVKHNRFVSSFGSVTKLRIEFERLKSHLIKTESPIVFAHNDL 202
            F+ LL E+      +  F    G VT  R + ++L+S   +    I+F H D+
Sbjct: 1650 FILLLYERLIQCYLNIDFEGKIGVVTPYRSQVQQLRSQFQRKYGSIIFKHLDI 1702


>SPCC663.03 |pmd1||leptomycin efflux transporter
           Pmd1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1362

 Score = 26.2 bits (55), Expect = 6.8
 Identities = 12/30 (40%), Positives = 17/30 (56%)

Query: 150 FLSLLPEKFSTEVKHNRFVSSFGSVTKLRI 179
           F+  LPE+FST V    F+ S G   ++ I
Sbjct: 549 FIMTLPEQFSTNVGQRGFLMSGGQKQRIAI 578


>SPAC823.12 |||zinc finger protein Pep5/Vps11 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 906

 Score = 26.2 bits (55), Expect = 6.8
 Identities = 15/49 (30%), Positives = 26/49 (53%)

Query: 147 IEQFLSLLPEKFSTEVKHNRFVSSFGSVTKLRIEFERLKSHLIKTESPI 195
           IE+ +  L   FS+  +   F ++FG V+     F+ L+S  ++ ES I
Sbjct: 19  IEENIDRLTSSFSSNGELVVFATAFGDVSIYNSSFKSLQSIKVEDESSI 67


>SPAC23C4.17 |||tRNA |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 674

 Score = 25.8 bits (54), Expect = 9.0
 Identities = 11/40 (27%), Positives = 21/40 (52%)

Query: 90  YAVFENGLIYQYFPGDTLNIETVLDIKIWPLVAKQMAKMH 129
           + V ++ L     P +  N +  L   +WPL  ++M+K+H
Sbjct: 366 WKVLDDSLNEFQSPAENTNDKIELTESMWPLPEEEMSKLH 405


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.322    0.139    0.423 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,677,077
Number of Sequences: 5004
Number of extensions: 72951
Number of successful extensions: 171
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 158
Number of HSP's gapped (non-prelim): 12
length of query: 343
length of database: 2,362,478
effective HSP length: 73
effective length of query: 270
effective length of database: 1,997,186
effective search space: 539240220
effective search space used: 539240220
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 54 (25.8 bits)