GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001218-TA|BGIBMGA001218-PA|IPR001023|Heat shock protein
Hsp70, IPR013126|Heat shock protein 70
         (840 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.    24   4.4  
DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein p...    24   5.9  
AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    24   5.9  

>DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.
          Length = 471

 Score = 24.2 bits (50), Expect = 4.4
 Identities = 10/20 (50%), Positives = 13/20 (65%)

Query: 69  GFKRLLGRKFSDPLVQKELK 88
           G   +LG K+  PL+QK LK
Sbjct: 305 GLLSVLGYKYITPLIQKHLK 324


>DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein
           protein.
          Length = 430

 Score = 23.8 bits (49), Expect = 5.9
 Identities = 11/29 (37%), Positives = 16/29 (55%)

Query: 311 QICAETFNRVERTLRAILHNAKLRSEDIH 339
           Q C  T N  + T   +L   +LR+EDI+
Sbjct: 157 QACPYTLNIFDLTSDKLLRQYRLRAEDIN 185


>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 23.8 bits (49), Expect = 5.9
 Identities = 29/103 (28%), Positives = 43/103 (41%), Gaps = 7/103 (6%)

Query: 588 VLVKTVELPIEAQTHGLSVHELNGYVEQEGKMQAQDRQEKERADARNALEEYVYELRGKL 647
           VLV TV L   A   GLS + L  +  Q+ +   + RQ  E    +  +EE   E    L
Sbjct: 183 VLVLTVTLSASAMVLGLSSYSLTEF--QQRRAFLETRQSLE---VQLVIEEQSTEQERLL 237

Query: 648 SEGETLHDFVAEDQRNKLVNHLDSVEQWLYDEGEDQNRQVYSD 690
                L + VA   R  L   LD+  + +Y    +    +Y+D
Sbjct: 238 L--SVLPEHVAVKMRQDLGASLDTQFKKIYMSRHENVSILYAD 278


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.315    0.130    0.370 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 212,954
Number of Sequences: 429
Number of extensions: 8556
Number of successful extensions: 22
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 20
Number of HSP's gapped (non-prelim): 3
length of query: 840
length of database: 140,377
effective HSP length: 64
effective length of query: 776
effective length of database: 112,921
effective search space: 87626696
effective search space used: 87626696
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 48 (23.4 bits)