GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001217-TA|BGIBMGA001217-PA|IPR012337|Polynucleotidyl
transferase, Ribonuclease H fold, IPR006941|Ribonuclease CAF1
         (205 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC18.06c |caf1|pop2|CCR4-Not complex subunit Caf1|Schizosaccha...   196   2e-51
SPCC1393.13 |||DUF89 family protein|Schizosaccharomyces pombe|ch...    27   1.5  
SPBC359.02 |alr2||alanine racemase Alr2 |Schizosaccharomyces pom...    25   7.9  
SPAC144.14 |klp8||kinesin-like protein Klp8|Schizosaccharomyces ...    25   7.9  

>SPCC18.06c |caf1|pop2|CCR4-Not complex subunit
           Caf1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 332

 Score =  196 bits (478), Expect = 2e-51
 Identities = 87/161 (54%), Positives = 121/161 (75%), Gaps = 1/161 (0%)

Query: 27  LREDMYAQDSIDLLQNSGLQFREHEEHGIEPLEFAELLMSSGIVLMDNINWLSFHSGYDF 86
           L++DMYA +SI+LL  SG+ F++H+E GIEP +FAELL+ SG+VL + + W++FHSGYDF
Sbjct: 113 LQDDMYAPESIELLTKSGIDFKKHQEVGIEPADFAELLIGSGLVLQEEVTWITFHSGYDF 172

Query: 87  GYLLKLLTDQNLPHEENDFFERLRLYFPTVYDVKYLMKLCKNLKGGLQEVADQLELRRVG 146
            YLLK +T   LP E  +F++ L +YFP  YD+KY+MK   N   GLQ++AD L++ R+G
Sbjct: 173 AYLLKAMTQIPLPAEYEEFYKILCIYFPKNYDIKYIMKSVLNNSKGLQDIADDLQIHRIG 232

Query: 147 PQHQAGSDSLLTGMAFFKIKEIFFDGNIESTS-GHLYGLGA 186
           PQHQAGSD+LLT   FF+I+  +FDG+I+S     LYGLG+
Sbjct: 233 PQHQAGSDALLTARIFFEIRSRYFDGSIDSRMLNQLYGLGS 273



 Score = 54.0 bits (124), Expect = 1e-08
 Identities = 30/59 (50%), Positives = 40/59 (67%), Gaps = 6/59 (10%)

Query: 1   MDTEFPGVVARPIGEFRSTADYQYQLLREDMYAQDSIDLLQNSGLQFREHEEHGIEPLE 59
           MDTEFPGVVARP+G F+S+ DY YQ LR ++   DS+ ++Q  GL     +E G  P+E
Sbjct: 49  MDTEFPGVVARPLGVFKSSDDYHYQTLRANV---DSLKIIQ-IGLAL--SDEEGNAPVE 101


>SPCC1393.13 |||DUF89 family protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 442

 Score = 27.5 bits (58), Expect = 1.5
 Identities = 19/60 (31%), Positives = 29/60 (48%), Gaps = 2/60 (3%)

Query: 117 YDVKYLMKLCKNLKGGLQEVAD-QLELRRVGPQHQAGSDSLLTGMAFFKIKEIFFDGNIE 175
           YD+++   L K L G   ++ D   EL +VGP     +  L  G  F++I  +FF    E
Sbjct: 75  YDLQHNRPL-KPLVGQGPDIDDYNEELEQVGPLTWGDAPWLYAGCYFYRIMSLFFQARSE 133


>SPBC359.02 |alr2||alanine racemase Alr2 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 370

 Score = 25.0 bits (52), Expect = 7.9
 Identities = 18/69 (26%), Positives = 33/69 (47%), Gaps = 2/69 (2%)

Query: 83  GYDFGYLLKLLTDQNLPHEENDFFERLRLYFPTVYDV-KYLMKLCKNLKGGLQEVADQLE 141
           GY++  + +LL ++N P        +   Y     +V ++L K C     G+  + + LE
Sbjct: 14  GYNYNLIRELLDEKN-PDAHILCILKANAYGHGAVEVAQFLAKYCSAEGFGVASIEEALE 72

Query: 142 LRRVGPQHQ 150
           LR  G Q++
Sbjct: 73  LRLSGIQNR 81


>SPAC144.14 |klp8||kinesin-like protein Klp8|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 511

 Score = 25.0 bits (52), Expect = 7.9
 Identities = 11/28 (39%), Positives = 16/28 (57%)

Query: 35  DSIDLLQNSGLQFREHEEHGIEPLEFAE 62
           D +  L++   Q R HEEH  + L+F E
Sbjct: 378 DILTTLESDREQLRRHEEHSQKLLKFIE 405


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.320    0.139    0.409 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 993,103
Number of Sequences: 5004
Number of extensions: 41940
Number of successful extensions: 113
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 109
Number of HSP's gapped (non-prelim): 5
length of query: 205
length of database: 2,362,478
effective HSP length: 70
effective length of query: 135
effective length of database: 2,012,198
effective search space: 271646730
effective search space used: 271646730
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 52 (25.0 bits)