Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001217-TA|BGIBMGA001217-PA|IPR012337|Polynucleotidyl
transferase, Ribonuclease H fold, IPR006941|Ribonuclease CAF1
(205 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_1070 + 33872845-33873726 200 5e-52
09_04_0126 + 14874739-14875581 190 5e-49
08_02_0807 + 21411799-21412665 182 2e-46
04_04_1644 + 35015849-35016838 123 9e-29
10_08_0041 - 14374684-14377339,14377371-14378233 87 9e-18
10_08_0036 + 14325793-14326457,14326610-14328035 87 9e-18
10_08_0032 - 14288522-14290465 87 9e-18
06_01_0276 + 2035763-2036770 85 4e-17
07_01_0499 - 3738959-3740068 78 4e-15
10_01_0149 + 1745355-1746230 71 5e-13
10_08_0040 + 14360543-14361778,14361787-14362782,14362791-14363657 69 3e-12
10_01_0124 - 1504521-1505303 60 9e-10
06_03_0183 + 17642639-17643428,17644507-17644949 47 1e-05
06_03_0182 + 17627434-17627922 40 0.001
06_03_0342 + 19737951-19738772 40 0.002
10_08_0038 - 14336633-14336864,14336970-14337187,14337302-14339020 39 0.003
09_02_0090 - 4147108-4147191,4147629-4147697,4148089-4148343,414... 32 0.38
12_02_0707 - 22330267-22330872,22331154-22332870,22335417-22335634 30 1.2
04_04_0178 - 23337801-23337896,23337999-23338067,23338171-233382... 30 1.5
08_02_0184 + 13947739-13947930,13948289-13948465,13948546-139486... 29 3.5
11_06_0014 - 19267601-19267831,19268338-19268454,19268733-192688... 27 8.1
02_04_0373 - 22453074-22453358,22453590-22453715 27 8.1
>02_05_1070 + 33872845-33873726
Length = 293
Score = 200 bits (489), Expect = 5e-52
Identities = 88/164 (53%), Positives = 125/164 (76%)
Query: 30 DMYAQDSIDLLQNSGLQFREHEEHGIEPLEFAELLMSSGIVLMDNINWLSFHSGYDFGYL 89
D++A DSI+LL+ SG+ FR + E G++ FAELLMSSG+VL D++ W++FH+GYDFGYL
Sbjct: 130 DIFASDSIELLRRSGIDFRRNSERGVDARRFAELLMSSGVVLNDSVYWVTFHAGYDFGYL 189
Query: 90 LKLLTDQNLPHEENDFFERLRLYFPTVYDVKYLMKLCKNLKGGLQEVADQLELRRVGPQH 149
LK+LT +LP + FF+ +++YFPTVYD+K+LMK C +L GGL ++A+ L++ RVG H
Sbjct: 190 LKILTCSSLPDTQAGFFKLMKIYFPTVYDIKHLMKFCNSLHGGLNKLAELLDVERVGESH 249
Query: 150 QAGSDSLLTGMAFFKIKEIFFDGNIESTSGHLYGLGAPFTTNAN 193
QAGSDSL+T AF+K+K+ FF G+ E +G LYGL A +A+
Sbjct: 250 QAGSDSLVTSCAFWKLKDSFFAGSTEKYAGVLYGLNAENVVSAH 293
Score = 50.0 bits (114), Expect = 1e-06
Identities = 25/47 (53%), Positives = 32/47 (68%), Gaps = 4/47 (8%)
Query: 1 MDTEFPGVVARPIGEFRSTADYQYQLLREDMYAQDSIDLLQNSGLQF 47
MDTEFPG+V RP+G FRS ADY Y L+ ++ D + L+Q GL F
Sbjct: 57 MDTEFPGIVCRPVGAFRSPADYNYATLKANV---DMLHLIQ-LGLTF 99
>09_04_0126 + 14874739-14875581
Length = 280
Score = 190 bits (464), Expect = 5e-49
Identities = 87/158 (55%), Positives = 114/158 (72%)
Query: 28 REDMYAQDSIDLLQNSGLQFREHEEHGIEPLEFAELLMSSGIVLMDNINWLSFHSGYDFG 87
R D+ A DSIDLL+ SG+ F H G + FAELLMSSG+V+ + W++FHSGYDFG
Sbjct: 112 RTDVAAADSIDLLRRSGIDFTRHSADGADARRFAELLMSSGVVMNSEVRWVTFHSGYDFG 171
Query: 88 YLLKLLTDQNLPHEENDFFERLRLYFPTVYDVKYLMKLCKNLKGGLQEVADQLELRRVGP 147
YLLKLLT LP FF+ +R+YFP VYD+K+LM+ C +L GGL ++A+ L++ RVG
Sbjct: 172 YLLKLLTGTYLPDTITGFFDLIRIYFPVVYDIKHLMRFCNSLHGGLNKLAELLDVERVGI 231
Query: 148 QHQAGSDSLLTGMAFFKIKEIFFDGNIESTSGHLYGLG 185
HQAGSDSLLT ++F K+KE +F+G E +G LYGLG
Sbjct: 232 CHQAGSDSLLTALSFKKLKEAYFNGLTEKYAGVLYGLG 269
Score = 49.6 bits (113), Expect = 2e-06
Identities = 27/54 (50%), Positives = 35/54 (64%), Gaps = 6/54 (11%)
Query: 1 MDTEFPGVVARPIGEFRSTADYQYQLLREDMYAQDSIDLLQNSGLQFREHEEHG 54
MDTEFPGVV RP+G F+S AD+ Y L+ ++ D + L+Q GL F EHG
Sbjct: 41 MDTEFPGVVCRPLGTFKSNADFNYATLKANV---DMLKLIQ-LGLTF--SNEHG 88
>08_02_0807 + 21411799-21412665
Length = 288
Score = 182 bits (442), Expect = 2e-46
Identities = 82/157 (52%), Positives = 111/157 (70%)
Query: 28 REDMYAQDSIDLLQNSGLQFREHEEHGIEPLEFAELLMSSGIVLMDNINWLSFHSGYDFG 87
R D DSI +L+ G+ F G +P+ FAELLMSSG+VL ++ W++FHSGYDFG
Sbjct: 116 RTDPSNADSIQMLRTCGIDFDRFAAEGADPIRFAELLMSSGVVLNADVQWITFHSGYDFG 175
Query: 88 YLLKLLTDQNLPHEENDFFERLRLYFPTVYDVKYLMKLCKNLKGGLQEVADQLELRRVGP 147
YLL+LLT +NLP FF+ +R+YFP +YD+K+LM+ C NL GGL + + L+++RVG
Sbjct: 176 YLLRLLTGRNLPDNMPAFFDLIRIYFPVLYDIKHLMRFCSNLHGGLSRLGELLDVKRVGT 235
Query: 148 QHQAGSDSLLTGMAFFKIKEIFFDGNIESTSGHLYGL 184
HQAGSDSLLT + KIKE++F G+ E +G LYGL
Sbjct: 236 CHQAGSDSLLTLGCYNKIKEVYFKGSTEKHAGVLYGL 272
Score = 42.7 bits (96), Expect = 2e-04
Identities = 16/31 (51%), Positives = 23/31 (74%)
Query: 1 MDTEFPGVVARPIGEFRSTADYQYQLLREDM 31
MDTEFPG+V RP+G FR+T ++ Y L ++
Sbjct: 45 MDTEFPGIVCRPVGNFRTTDEFNYANLEANV 75
>04_04_1644 + 35015849-35016838
Length = 329
Score = 123 bits (297), Expect = 9e-29
Identities = 67/162 (41%), Positives = 97/162 (59%), Gaps = 5/162 (3%)
Query: 28 REDMYAQDSIDLLQNSGLQFREHEEHGIEPLEFAELLMSSGIVLMDN-INWLSFHSGYDF 86
R +A +S+ LL G+ H HG+ A LLMSSG+V + W++FHS YDF
Sbjct: 148 RVHRHAAESVQLLAEHGVDLAAHRRHGVRASALAPLLMSSGLVCSHGAVKWVTFHSAYDF 207
Query: 87 GYLLKLLTDQNLPHEENDFFERLRLYF-PTVYDVKYLMKLC-KNLKGGLQEVADQLELRR 144
YL+KLL + LP +F +R++F VYDVK++M+ C L GGL+ VA L+++R
Sbjct: 208 AYLVKLLMGRKLPRSMAEFLNLVRVFFGDEVYDVKHMMRHCGGELYGGLERVAAALQVKR 267
Query: 145 -VGPQHQAGSDSLLTGMAFFKIKEIFF-DGNIESTSGHLYGL 184
G HQA SDSLLT F +++E++F +E+ G L+GL
Sbjct: 268 AAGRCHQAASDSLLTWDVFRRMRELYFLKHGVEAYQGVLFGL 309
Score = 31.9 bits (69), Expect = 0.38
Identities = 19/42 (45%), Positives = 26/42 (61%), Gaps = 4/42 (9%)
Query: 1 MDTEFPGVVARPIGE-FRSTADYQYQLLREDMYAQDSIDLLQ 41
MDTEFPGV+ RP TA +Y LLR ++ D++ L+Q
Sbjct: 83 MDTEFPGVIHRPTKHPALLTAGDRYDLLRRNV---DALHLIQ 121
>10_08_0041 - 14374684-14377339,14377371-14378233
Length = 1172
Score = 87.0 bits (206), Expect = 9e-18
Identities = 52/141 (36%), Positives = 75/141 (53%), Gaps = 7/141 (4%)
Query: 32 YAQDSIDLLQNSGLQFREHEEHGIEPLEFAELLMSSGIVLMDNINWLSFHSGYDFGYLLK 91
Y SID L + G +H + G+ P E L+ ++ W++FH YD +LL+
Sbjct: 749 YHGKSIDFLSSQGHDLTQHSKRGVAPEFVYEGLLRHLPFGDGSVTWVAFHGDYDLAFLLR 808
Query: 92 LLTDQN------LPHEENDFFERLRLYFPTVYDVKYLMKLCKN-LKGGLQEVADQLELRR 144
LL + LP + F +++R FP VYDV+ L KL K+ G L +A+ L + R
Sbjct: 809 LLQGGDHGGNCLLPPKLATFLQKVREKFPVVYDVRVLGKLVKDGFNGSLTALAEYLGIPR 868
Query: 145 VGPQHQAGSDSLLTGMAFFKI 165
G +H AGSD+LLT FFKI
Sbjct: 869 NGDEHHAGSDALLTLSCFFKI 889
Score = 58.0 bits (134), Expect = 5e-09
Identities = 34/122 (27%), Positives = 64/122 (52%), Gaps = 10/122 (8%)
Query: 55 IEPLEFAELLMSSGIVLMDNINWLSFHSGYDFGYLLK-LLTDQNLPHEENDFFERLRLYF 113
+ P +FA+ + S G + NI+W++FH + +++ L+ Q+LP + + R +F
Sbjct: 1025 VHPQQFAKFMASCGALGDPNISWVTFHGAHGIARMIRSFLSPQDLPSQWCSYIGHRRAFF 1084
Query: 114 PTVYDVKYLMKLCKNL--------KGGLQEVADQLELRRVGPQHQAGSDSLLTGMAFFKI 165
P +YDV L++ ++ KGGL +VA L L+ + +A + LLT + ++
Sbjct: 1085 PAIYDVALLVRRSFDIITIPWIECKGGLLDVAQALNLKEIEADMEA-ARVLLTLRCYMRL 1143
Query: 166 KE 167
E
Sbjct: 1144 AE 1145
>10_08_0036 + 14325793-14326457,14326610-14328035
Length = 696
Score = 87.0 bits (206), Expect = 9e-18
Identities = 49/140 (35%), Positives = 74/140 (52%), Gaps = 6/140 (4%)
Query: 32 YAQDSIDLLQNSGLQFREHEEHGIEPLEFAELLMSSGIVLMDNINWLSFHSGYDFGYLLK 91
Y ++I L G EH + G+ P L+S ++ W+++H YDFG+ L+
Sbjct: 266 YNGEAISFLSEQGHDLTEHRDRGVVPHFVYTGLLSHLPFGNSSVTWIAYHGDYDFGFFLR 325
Query: 92 LLT-----DQNLPHEENDFFERLRLYFPTVYDVKYLMKLCKN-LKGGLQEVADQLELRRV 145
LL +LP E F +LRL FP +YD++ L +L ++ +G L +AD L + R
Sbjct: 326 LLQGGCRGSSHLPLELPTFLHQLRLNFPRLYDIRVLGQLVQHGFRGSLTAIADLLGVNRF 385
Query: 146 GPQHQAGSDSLLTGMAFFKI 165
G H AG D+LLT FF+I
Sbjct: 386 GRGHHAGVDALLTLSCFFQI 405
Score = 52.0 bits (119), Expect = 3e-07
Identities = 29/97 (29%), Positives = 50/97 (51%), Gaps = 9/97 (9%)
Query: 55 IEPLEFAELLMSSGIVLMDNINWLSFHSGYDFGYLLKLLT-DQNLPHEENDFFERLRLYF 113
+ P +F L+ S G N++W++FH + L+ + Q+LP + + E+ R YF
Sbjct: 545 LHPRQFTRLMASCGATSNPNVSWVTFHGAHGIASLISSFSAPQDLPSDWPSYVEQRRAYF 604
Query: 114 PTVYDVKYLMKLCKNL--------KGGLQEVADQLEL 142
P +YDV ++ ++ KGGL +VA L+L
Sbjct: 605 PGMYDVALIVHRYPDIGILPTTGCKGGLFDVARALDL 641
>10_08_0032 - 14288522-14290465
Length = 647
Score = 87.0 bits (206), Expect = 9e-18
Identities = 55/146 (37%), Positives = 77/146 (52%), Gaps = 13/146 (8%)
Query: 32 YAQDSIDLLQNSGLQFREHEEHGIEPLEFAELLMSSGIVLMD--NINWLSFHSGYDFGYL 89
Y + SI L G REH G+ P F E L+ + D ++ WL++HS YD G+L
Sbjct: 263 YNKKSIAFLSRQGHDLREHRRRGVSPRRFYEGLLRH-LPFGDGRSVTWLAYHSDYDLGFL 321
Query: 90 LKLLT-------DQNLPHEENDFFERLRLYFPTVYDVKYLMKLCKN--LKGGLQEVADQL 140
L+LL +LP + F RLR FP YDV+ + ++ ++ G L +A+ L
Sbjct: 322 LRLLQCGGRRRGGGDLPRQLAAFLRRLRENFPAFYDVRVIRQMLEDHGFSGKLTGLAEHL 381
Query: 141 ELRRV-GPQHQAGSDSLLTGMAFFKI 165
+RR G H AGSD+LLT FFKI
Sbjct: 382 GIRRTGGAAHHAGSDALLTLSCFFKI 407
>06_01_0276 + 2035763-2036770
Length = 335
Score = 85.0 bits (201), Expect = 4e-17
Identities = 55/164 (33%), Positives = 85/164 (51%), Gaps = 8/164 (4%)
Query: 28 REDMYAQDSIDLLQNSGLQFREHEEHGIEPLEFAELLMSSGIVLMDNINWLSFHSGYDFG 87
R D ++ S+ +L G+ F HGI+ +FA S + + W +F YDF
Sbjct: 163 RRDPHSGSSVAMLAAHGVDFTALRRHGIDHGDFARAFGRSKLAC-GRLTWAAFSGSYDFA 221
Query: 88 YLLKLLT-DQNLPHEENDFFERL-RLYFPTVYDVKYLMKLC---KNLKGGLQEVADQLEL 142
YL+K+LT + LP F ++ +++ P V DVK+L K C ++GGL+ VA L +
Sbjct: 222 YLVKVLTGGRPLPSTLEGFMAKVSKIFGPAVLDVKHLAKFCGGGGGIRGGLEHVAAALGV 281
Query: 143 RR-VGPQHQAGSDSLLTGMAFFKIKEIFF-DGNIESTSGHLYGL 184
R G H AGSDSLLT + + FF + + + +G + GL
Sbjct: 282 HRAAGRAHNAGSDSLLTSDVLHAMVDRFFPNSGVLNHAGAIDGL 325
>07_01_0499 - 3738959-3740068
Length = 369
Score = 78.2 bits (184), Expect = 4e-15
Identities = 52/153 (33%), Positives = 79/153 (51%), Gaps = 8/153 (5%)
Query: 27 LREDMYAQDSIDLLQNSGLQFREHEEHGIEPLEFAELLMSSGIVLMDNINWLSFHSGYDF 86
LR +A +SI LL++ G+ F G++ F L + ++F YD
Sbjct: 193 LRRHAHAPESIALLRSKGVDFDRTRRGGVDAAAFGPRLRRWLRAGLGRAGLVTFSGAYDL 252
Query: 87 GYLLKLLTD-----QNLPHEENDFFERLRLYFP-TVYDVKYLMKLCK-NLKGGLQEVADQ 139
Y+LK+L LP + F +R T+YDV + + C +++GGL+ VA +
Sbjct: 253 AYMLKMLYGGGGGGYRLPGDAATFEFVVRAVIGRTLYDVGKMARHCPGDMRGGLERVAGK 312
Query: 140 LELRR-VGPQHQAGSDSLLTGMAFFKIKEIFFD 171
L +RR VG HQAGSDSLLT F +++E +FD
Sbjct: 313 LGVRRAVGEAHQAGSDSLLTSQMFMRMRERYFD 345
Score = 28.3 bits (60), Expect = 4.6
Identities = 16/42 (38%), Positives = 25/42 (59%), Gaps = 4/42 (9%)
Query: 1 MDTEFPGVVARPIG-EFRSTADYQYQLLREDMYAQDSIDLLQ 41
+DTEFPG V RP + T +Y LL++++ D + L+Q
Sbjct: 121 VDTEFPGTVHRPSAPAYTLTRKQKYALLKKNV---DELHLVQ 159
>10_01_0149 + 1745355-1746230
Length = 291
Score = 71.3 bits (167), Expect = 5e-13
Identities = 53/175 (30%), Positives = 84/175 (48%), Gaps = 6/175 (3%)
Query: 15 EFRSTADYQYQLLREDMYAQDSIDLLQNSGLQFREHEEHGIEPLEFAELLMSSGIVLMDN 74
EF D+ R +A +S+ L+ G F G+ L FA L +SGI+ +
Sbjct: 117 EFMWDFDFAGFDARYHRHAPESVQFLRAQGFDFEAARLAGVPALAFAAELAASGILGLRG 176
Query: 75 INWLSFHSGYDFGYLLKLLT-DQNLPHEENDFFERLRLYFPT-VYDVKYLMKLCKNLKGG 132
+ W++F YD +LL+L T LP F ++ F T V+D K++ L ++ GG
Sbjct: 177 VTWVAFGGMYDVAFLLRLATGGAPLPATRLGFLAQVGAVFGTQVFDAKHMASLL-HMHGG 235
Query: 133 LQEVADQLELRRVGP-QHQAGSDSLLTGMAFFKIKEIFFD--GNIESTSGHLYGL 184
L V L L P +H AG +S++ F +++ F D G++ S S + GL
Sbjct: 236 LAAVGGMLRLPPQLPRRHMAGQNSVMAIQLFMELRRRFNDLGGSLHSCSLKIEGL 290
>10_08_0040 + 14360543-14361778,14361787-14362782,14362791-14363657
Length = 1032
Score = 68.9 bits (161), Expect = 3e-12
Identities = 49/142 (34%), Positives = 65/142 (45%), Gaps = 18/142 (12%)
Query: 32 YAQDSIDLLQNSGLQFREHEEHGIEPLEFAELLMSSGIVLMDNINWLSFHSGYDFGYLLK 91
Y + SI L G REH G+ P + ++ WL++H YD +LL
Sbjct: 658 YNKKSIAFLSRQGHDLREHRRRGVSPRRVYD---------GRSVTWLAYHGDYDLSFLLH 708
Query: 92 LLT-------DQNLPHEENDFFERLRLYFPTVYDVKYLMKLCKNLKGGLQEVADQLELRR 144
LL +LP + F RLR FP YDV+ + G L +A+ L +RR
Sbjct: 709 LLQRGGRRRGGGDLPRQLATFLRRLRENFPAFYDVRADAE-DHGFSGKLTGLAEHLGIRR 767
Query: 145 VG-PQHQAGSDSLLTGMAFFKI 165
G H AGSD+LLT FFKI
Sbjct: 768 TGGAAHHAGSDALLTLSCFFKI 789
Score = 31.9 bits (69), Expect = 0.38
Identities = 27/118 (22%), Positives = 53/118 (44%), Gaps = 14/118 (11%)
Query: 59 EFAELLMSSGIVLMDNINWLSFHSGYDFGYLLKLLTDQNLPHEENDFFERLRLYFPTVYD 118
+ AEL+ S G +++W++FH L++ +P + + P++YD
Sbjct: 915 QLAELVQSCGATDNPDVSWVTFHGSDVICRLIRSANGGVIPSSISG-----ESFLPSLYD 969
Query: 119 VKYLMKLCKNL--------KGGLQEVADQLELRRVGPQHQAGSDSLLTGMAFFKIKEI 168
V +++ + GG+ +VA LEL+ + +A LLT F ++ E+
Sbjct: 970 VALIVRRFLGIGTLPTTERNGGIFDVARALELKAIEADKEA-ERVLLTLRCFMRLAEM 1026
>10_01_0124 - 1504521-1505303
Length = 260
Score = 60.5 bits (140), Expect = 9e-10
Identities = 44/145 (30%), Positives = 70/145 (48%), Gaps = 8/145 (5%)
Query: 30 DMYAQDSIDLLQNSGLQFREHEEHGIEPLEFAELLMS--SGIVLMDNINWLSFHSGYDFG 87
D + DS++ L+N G+ F + G+ F E L++ + W +F YD G
Sbjct: 101 DPHVVDSVEFLKNQGIDFDLARQIGVTSTAFGEKLLAILPPPSRRGELTWSAFGGAYDMG 160
Query: 88 YLLKLLT-DQNLPHEENDFFE--RLRLYFPTVYDVKYLMKLCKN--LKGGLQEVADQLEL 142
YLLK+LT Q LP F + + RL ++D KYL++ + GL+ AD L +
Sbjct: 161 YLLKMLTGGQPLPETRQQFMQLVKSRLGGGRIFDSKYLVEHDRQDLRNAGLRHTADVLGV 220
Query: 143 R-RVGPQHQAGSDSLLTGMAFFKIK 166
R + G + AG S++ F I+
Sbjct: 221 RQQEGVKMLAGHKSVVAAAIFATIR 245
>06_03_0183 + 17642639-17643428,17644507-17644949
Length = 410
Score = 46.8 bits (106), Expect = 1e-05
Identities = 43/142 (30%), Positives = 63/142 (44%), Gaps = 5/142 (3%)
Query: 30 DMYAQDSIDLLQNSGLQFREHEEHGIEPLEFAELLMSSGIVLMDNINWLSFHSGYDFGYL 89
D+ SI L+ G+ F G+EP LL+ SG+ L +W +F Y GYL
Sbjct: 121 DLRDPASIAHLRGRGVDFGRLPCAGVEPHRLRLLLLGSGL-LQAWPSWATFTGAYHVGYL 179
Query: 90 LKLLTDQNLPHEENDFFERLR-LYFPTVYDVKYLMKLCKNLKG-GLQEVADQLELRRVGP 147
+K+LT LP + F VYDVK L G L+E+A + + V
Sbjct: 180 MKILTGAELPSGLDAFTTMATGTLGEGVYDVKRLAAEVNTACGFSLREIAACIGVVPVAA 239
Query: 148 QH--QAGSDSLLTGMAFFKIKE 167
QH A + ++ T F ++E
Sbjct: 240 QHGMVASAGAVSTLQCFKALRE 261
>06_03_0182 + 17627434-17627922
Length = 162
Score = 40.3 bits (90), Expect = 0.001
Identities = 29/88 (32%), Positives = 39/88 (44%), Gaps = 2/88 (2%)
Query: 36 SIDLLQNSGLQFREHEEHGIEPLEFAELLMSSGIVLMDNINWLSFHSGYDFGYLLKLLTD 95
SI L+ G+ F IE LL+ SG+ L +W +F Y GYL+K+LT
Sbjct: 50 SIAHLRGRGVDFGRLPHARIELHRLRSLLLGSGL-LQTRPSWATFTGAYHIGYLMKILTG 108
Query: 96 QNLPHEENDFFERLRLYF-PTVYDVKYL 122
+P + F VYDVK L
Sbjct: 109 AEVPSGLDAFTAMATATLGEGVYDVKRL 136
>06_03_0342 + 19737951-19738772
Length = 273
Score = 39.5 bits (88), Expect = 0.002
Identities = 43/155 (27%), Positives = 64/155 (41%), Gaps = 21/155 (13%)
Query: 30 DMYAQDSIDLLQNSGLQFREHEEHGIEPLEFAELLMSSGIVLMDNINWLSFHSGYDFGYL 89
DM S+D L++ G+ F G+ LL SSG+ L +W +F Y Y
Sbjct: 105 DMCEPGSVDYLRHRGMDFNALPWSGVGAASLGRLLWSSGL-LAARPSWATFAGAYHVAYF 163
Query: 90 LKLL-------------TDQNLPHEENDFFERLR-LYFPTVYDVKYLMKLCKNLKGGLQE 135
++L + LP + F E +R L VYDV+ L L+G L +
Sbjct: 164 ARILMLAVAVAGTGGGGAARRLPADVGGFEEMVRSLLGHHVYDVRL---LAGELRGPLAD 220
Query: 136 VADQLEL---RRVGPQHQAGSDSLLTGMAFFKIKE 167
VA QL AG+ +L+ AF ++E
Sbjct: 221 VARQLGAAVPADAAAAGLAGAGALMALQAFEALRE 255
>10_08_0038 - 14336633-14336864,14336970-14337187,14337302-14339020
Length = 722
Score = 38.7 bits (86), Expect = 0.003
Identities = 18/62 (29%), Positives = 31/62 (50%)
Query: 32 YAQDSIDLLQNSGLQFREHEEHGIEPLEFAELLMSSGIVLMDNINWLSFHSGYDFGYLLK 91
Y +SI L + G +H + G+ P E L+ ++ W+++H YD +LL+
Sbjct: 432 YHGESIHFLSSQGHDLTQHSKRGVTPEFVYEGLLRHLPFGDGSVTWVAYHGDYDLAFLLR 491
Query: 92 LL 93
LL
Sbjct: 492 LL 493
Score = 31.1 bits (67), Expect = 0.66
Identities = 11/45 (24%), Positives = 24/45 (53%)
Query: 55 IEPLEFAELLMSSGIVLMDNINWLSFHSGYDFGYLLKLLTDQNLP 99
+ P +FA+ + S G + NI+W++FH + +++ +P
Sbjct: 610 VHPQQFAKFMASCGALGDPNISWVTFHGAHGIARMIRSFDIVTIP 654
>09_02_0090 -
4147108-4147191,4147629-4147697,4148089-4148343,
4148701-4148865,4149000-4149044,4149193-4149267,
4149397-4149573,4149680-4149904,4150058-4150183
Length = 406
Score = 31.9 bits (69), Expect = 0.38
Identities = 15/29 (51%), Positives = 21/29 (72%), Gaps = 1/29 (3%)
Query: 118 DVKYLMKLCKNL-KGGLQEVADQLELRRV 145
D+KY++++CKNL L EV D+ EL RV
Sbjct: 253 DIKYMLRICKNLGMTALIEVHDERELDRV 281
>12_02_0707 - 22330267-22330872,22331154-22332870,22335417-22335634
Length = 846
Score = 30.3 bits (65), Expect = 1.2
Identities = 13/30 (43%), Positives = 19/30 (63%)
Query: 127 KNLKGGLQEVADQLELRRVGPQHQAGSDSL 156
K L GG++ ++D LEL GPQ + D+L
Sbjct: 382 KKLPGGIECISDMLELSTTGPQLEQFKDTL 411
>04_04_0178 -
23337801-23337896,23337999-23338067,23338171-23338253,
23338694-23338772,23338956-23339120,23339230-23339274,
23339370-23339444,23340135-23340311,23340398-23340721,
23340829-23340897
Length = 393
Score = 29.9 bits (64), Expect = 1.5
Identities = 14/29 (48%), Positives = 20/29 (68%), Gaps = 1/29 (3%)
Query: 118 DVKYLMKLCKNL-KGGLQEVADQLELRRV 145
D+KY++K+CK L L EV D+ E+ RV
Sbjct: 267 DIKYMLKICKILGMAALVEVHDEREMDRV 295
>08_02_0184 +
13947739-13947930,13948289-13948465,13948546-13948665,
13948709-13948753,13948848-13949012,13949324-13949402,
13949552-13949631,13950548-13950616,13950948-13951031
Length = 336
Score = 28.7 bits (61), Expect = 3.5
Identities = 13/29 (44%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
Query: 118 DVKYLMKLCKNL-KGGLQEVADQLELRRV 145
D+KY +++CK L L EV D+ E+ RV
Sbjct: 215 DIKYFLRICKELGMTALIEVHDEREMERV 243
>11_06_0014 -
19267601-19267831,19268338-19268454,19268733-19268890,
19269501-19269612,19269721-19269908,19270344-19270436,
19270521-19270708,19271635-19271720,19272662-19272811,
19273930-19274065,19274143-19274222,19275546-19275626,
19276114-19276245,19276490-19276610,19277457-19277518,
19277846-19277974,19278514-19278573,19278689-19278772,
19278852-19279532
Length = 962
Score = 27.5 bits (58), Expect = 8.1
Identities = 17/58 (29%), Positives = 27/58 (46%)
Query: 18 STADYQYQLLREDMYAQDSIDLLQNSGLQFREHEEHGIEPLEFAELLMSSGIVLMDNI 75
STA ++ L Y +D+ + L+ REH G + A++L G LM N+
Sbjct: 778 STAMHRGAALAAMSYMSCFLDVSLAAALESREHPSDGSPGVVLAQILARCGEGLMSNV 835
>02_04_0373 - 22453074-22453358,22453590-22453715
Length = 136
Score = 27.5 bits (58), Expect = 8.1
Identities = 13/33 (39%), Positives = 19/33 (57%)
Query: 37 IDLLQNSGLQFREHEEHGIEPLEFAELLMSSGI 69
+D L + G Q REH+E G+E L A + G+
Sbjct: 89 VDGLWSGGKQRREHDERGVEALGNAVPARAEGV 121
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.320 0.139 0.409
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,933,341
Number of Sequences: 37544
Number of extensions: 238329
Number of successful extensions: 505
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 455
Number of HSP's gapped (non-prelim): 34
length of query: 205
length of database: 14,793,348
effective HSP length: 79
effective length of query: 126
effective length of database: 11,827,372
effective search space: 1490248872
effective search space used: 1490248872
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 58 (27.5 bits)
- SilkBase 1999-2023 -