GeneModel BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001217-TA|BGIBMGA001217-PA|IPR012337|Polynucleotidyl
transferase, Ribonuclease H fold, IPR006941|Ribonuclease CAF1
         (205 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_23743| Best HMM Match : No HMM Matches (HMM E-Value=.)             181   4e-46
SB_29994| Best HMM Match : Ank (HMM E-Value=0)                         28   6.3  
SB_43696| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.3  

>SB_23743| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 745

 Score =  181 bits (440), Expect = 4e-46
 Identities = 82/121 (67%), Positives = 102/121 (84%), Gaps = 1/121 (0%)

Query: 27  LREDMYAQDSIDLLQNSGLQFREHEEHGIEPLEFAELLMSSGIVLMDNINWLSFHSGYDF 86
           L EDMYAQDSIDLL  SG+QF++HEE GI+  +FAELL++SG+VL D + WLSFHS YDF
Sbjct: 100 LTEDMYAQDSIDLLNRSGIQFKQHEEEGIDVNDFAELLITSGLVLRDEVRWLSFHSAYDF 159

Query: 87  GYLLKLLTDQNLPHEENDFFERLRLYFPTVYDVKYLMKLCKNLKGGLQEVADQLELRRVG 146
           GYL+K+LT QNL  EE++FFE L+LYFP +YDVKYLMK CK+LKGGLQEV++ L+ +R G
Sbjct: 160 GYLIKVLTAQNLSSEESEFFELLKLYFPKIYDVKYLMKSCKSLKGGLQEVSELLD-KREG 218

Query: 147 P 147
           P
Sbjct: 219 P 219



 Score = 64.1 bits (149), Expect = 8e-11
 Identities = 34/61 (55%), Positives = 43/61 (70%), Gaps = 6/61 (9%)

Query: 1  MDTEFPGVVARPIGEFRSTADYQYQLLREDMYAQDSIDLLQNSGLQFREHEEHGIEPLEF 60
          MDTEFPGVVARPIGEFRSTA+YQ+QLLR       ++DLL+   L    + +HG +P + 
Sbjct: 36 MDTEFPGVVARPIGEFRSTAEYQFQLLR------CNVDLLKIIQLGMSFYNDHGQQPSDG 89

Query: 61 A 61
          A
Sbjct: 90 A 90


>SB_29994| Best HMM Match : Ank (HMM E-Value=0)
          Length = 407

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 13/40 (32%), Positives = 20/40 (50%), Gaps = 2/40 (5%)

Query: 62  ELLMSSGIVLMDNINWLSFHSGYDFGYL--LKLLTDQNLP 99
           E+ + +G ++  N NW + H     GYL   KLL  +  P
Sbjct: 143 EVFLEAGAMIKSNNNWHALHEACKKGYLDIAKLLVSKGAP 182


>SB_43696| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 281

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 11/23 (47%), Positives = 16/23 (69%)

Query: 48 REHEEHGIEPLEFAELLMSSGIV 70
          REH + G+ PL+ AE +MS  +V
Sbjct: 11 REHVKQGVAPLQAAEAIMSMTLV 33


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.320    0.139    0.409 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,712,003
Number of Sequences: 59808
Number of extensions: 261001
Number of successful extensions: 426
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 423
Number of HSP's gapped (non-prelim): 4
length of query: 205
length of database: 16,821,457
effective HSP length: 79
effective length of query: 126
effective length of database: 12,096,625
effective search space: 1524174750
effective search space used: 1524174750
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 58 (27.5 bits)