Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001217-TA|BGIBMGA001217-PA|IPR012337|Polynucleotidyl
transferase, Ribonuclease H fold, IPR006941|Ribonuclease CAF1
(205 letters)
Database: fruitfly
52,641 sequences; 24,830,863 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BT001837-1|AAN71594.1| 293|Drosophila melanogaster RH51274p pro... 291 3e-79
AY047553-1|AAK77285.1| 297|Drosophila melanogaster GH06247p pro... 291 3e-79
AE014296-2079|AAN12249.1| 293|Drosophila melanogaster CG5684-PC... 291 3e-79
AE014296-2078|AAN12248.1| 293|Drosophila melanogaster CG5684-PB... 291 3e-79
AE014296-2077|AAF49972.2| 297|Drosophila melanogaster CG5684-PA... 291 3e-79
BT001830-1|AAN71585.1| 293|Drosophila melanogaster RH46192p pro... 289 1e-78
AY122139-1|AAM52651.1| 271|Drosophila melanogaster GM14316p pro... 253 1e-67
U01842-1|AAA03718.1| 1066|Drosophila melanogaster kinesin-like p... 31 1.1
AY069442-1|AAL39587.1| 1066|Drosophila melanogaster LD15641p pro... 31 1.1
AE014296-198|AAF47458.2| 1066|Drosophila melanogaster CG9191-PA ... 31 1.1
AY051863-1|AAK93287.1| 1059|Drosophila melanogaster LD35990p pro... 29 3.4
AE014296-2475|AAF49663.3| 1059|Drosophila melanogaster CG17081-P... 29 3.4
DQ782382-1|ABG91087.1| 1066|Drosophila melanogaster microtubule ... 28 7.9
DQ782381-1|ABG91086.1| 1066|Drosophila melanogaster microtubule ... 28 7.9
>BT001837-1|AAN71594.1| 293|Drosophila melanogaster RH51274p
protein.
Length = 293
Score = 291 bits (715), Expect = 3e-79
Identities = 134/191 (70%), Positives = 161/191 (84%), Gaps = 3/191 (1%)
Query: 18 STADYQYQL-LREDMYAQDSIDLLQNSGLQFREHEEHGIEPLEFAELLMSSGIVLMDNIN 76
ST + ++ L EDMYAQDSIDLLQNSG+QF++HEE GI+P++FAELLMSSGIVL++NI
Sbjct: 102 STWQFNFKFNLSEDMYAQDSIDLLQNSGIQFKKHEEDGIDPIDFAELLMSSGIVLVENIK 161
Query: 77 WLSFHSGYDFGYLLKLLTDQNLPHEENDFFERLRLYFPTVYDVKYLMKLCKNLKGGLQEV 136
WL FHSGYDFGYLLKLLTDQNLP +E++FF+ L +YFP ++D+KYLMK CKNLKGGLQEV
Sbjct: 162 WLCFHSGYDFGYLLKLLTDQNLPPDESEFFDLLHIYFPNIFDIKYLMKSCKNLKGGLQEV 221
Query: 137 ADQLELRRVGPQHQAGSDSLLTGMAFFKIKEIFFDGNIEST--SGHLYGLGAPFTTNANN 194
ADQLELRRVGPQHQAGSD+LLTGMAFFK++E+FF+ NI+ SGHLYGLG F N N
Sbjct: 222 ADQLELRRVGPQHQAGSDALLTGMAFFKMREMFFEDNIDHAKYSGHLYGLGTSFIVNGTN 281
Query: 195 FQDNVDSGNSS 205
F D+ NS+
Sbjct: 282 FHDSNGETNSA 292
Score = 60.5 bits (140), Expect = 2e-09
Identities = 26/28 (92%), Positives = 27/28 (96%)
Query: 1 MDTEFPGVVARPIGEFRSTADYQYQLLR 28
MDTEFPGVVARP+GEFRSTADY YQLLR
Sbjct: 48 MDTEFPGVVARPVGEFRSTADYHYQLLR 75
>AY047553-1|AAK77285.1| 297|Drosophila melanogaster GH06247p
protein.
Length = 297
Score = 291 bits (715), Expect = 3e-79
Identities = 134/191 (70%), Positives = 161/191 (84%), Gaps = 3/191 (1%)
Query: 18 STADYQYQL-LREDMYAQDSIDLLQNSGLQFREHEEHGIEPLEFAELLMSSGIVLMDNIN 76
ST + ++ L EDMYAQDSIDLLQNSG+QF++HEE GI+P++FAELLMSSGIVL++NI
Sbjct: 106 STWQFNFKFNLSEDMYAQDSIDLLQNSGIQFKKHEEDGIDPIDFAELLMSSGIVLVENIK 165
Query: 77 WLSFHSGYDFGYLLKLLTDQNLPHEENDFFERLRLYFPTVYDVKYLMKLCKNLKGGLQEV 136
WL FHSGYDFGYLLKLLTDQNLP +E++FF+ L +YFP ++D+KYLMK CKNLKGGLQEV
Sbjct: 166 WLCFHSGYDFGYLLKLLTDQNLPPDESEFFDLLHIYFPNIFDIKYLMKSCKNLKGGLQEV 225
Query: 137 ADQLELRRVGPQHQAGSDSLLTGMAFFKIKEIFFDGNIEST--SGHLYGLGAPFTTNANN 194
ADQLELRRVGPQHQAGSD+LLTGMAFFK++E+FF+ NI+ SGHLYGLG F N N
Sbjct: 226 ADQLELRRVGPQHQAGSDALLTGMAFFKMREMFFEDNIDHAKYSGHLYGLGTSFIVNGTN 285
Query: 195 FQDNVDSGNSS 205
F D+ NS+
Sbjct: 286 FHDSNGETNSA 296
Score = 60.5 bits (140), Expect = 2e-09
Identities = 26/28 (92%), Positives = 27/28 (96%)
Query: 1 MDTEFPGVVARPIGEFRSTADYQYQLLR 28
MDTEFPGVVARP+GEFRSTADY YQLLR
Sbjct: 52 MDTEFPGVVARPVGEFRSTADYHYQLLR 79
>AE014296-2079|AAN12249.1| 293|Drosophila melanogaster CG5684-PC,
isoform C protein.
Length = 293
Score = 291 bits (715), Expect = 3e-79
Identities = 134/191 (70%), Positives = 161/191 (84%), Gaps = 3/191 (1%)
Query: 18 STADYQYQL-LREDMYAQDSIDLLQNSGLQFREHEEHGIEPLEFAELLMSSGIVLMDNIN 76
ST + ++ L EDMYAQDSIDLLQNSG+QF++HEE GI+P++FAELLMSSGIVL++NI
Sbjct: 102 STWQFNFKFNLSEDMYAQDSIDLLQNSGIQFKKHEEDGIDPIDFAELLMSSGIVLVENIK 161
Query: 77 WLSFHSGYDFGYLLKLLTDQNLPHEENDFFERLRLYFPTVYDVKYLMKLCKNLKGGLQEV 136
WL FHSGYDFGYLLKLLTDQNLP +E++FF+ L +YFP ++D+KYLMK CKNLKGGLQEV
Sbjct: 162 WLCFHSGYDFGYLLKLLTDQNLPPDESEFFDLLHIYFPNIFDIKYLMKSCKNLKGGLQEV 221
Query: 137 ADQLELRRVGPQHQAGSDSLLTGMAFFKIKEIFFDGNIEST--SGHLYGLGAPFTTNANN 194
ADQLELRRVGPQHQAGSD+LLTGMAFFK++E+FF+ NI+ SGHLYGLG F N N
Sbjct: 222 ADQLELRRVGPQHQAGSDALLTGMAFFKMREMFFEDNIDHAKYSGHLYGLGTSFIVNGTN 281
Query: 195 FQDNVDSGNSS 205
F D+ NS+
Sbjct: 282 FHDSNGETNSA 292
Score = 60.5 bits (140), Expect = 2e-09
Identities = 26/28 (92%), Positives = 27/28 (96%)
Query: 1 MDTEFPGVVARPIGEFRSTADYQYQLLR 28
MDTEFPGVVARP+GEFRSTADY YQLLR
Sbjct: 48 MDTEFPGVVARPVGEFRSTADYHYQLLR 75
>AE014296-2078|AAN12248.1| 293|Drosophila melanogaster CG5684-PB,
isoform B protein.
Length = 293
Score = 291 bits (715), Expect = 3e-79
Identities = 134/191 (70%), Positives = 161/191 (84%), Gaps = 3/191 (1%)
Query: 18 STADYQYQL-LREDMYAQDSIDLLQNSGLQFREHEEHGIEPLEFAELLMSSGIVLMDNIN 76
ST + ++ L EDMYAQDSIDLLQNSG+QF++HEE GI+P++FAELLMSSGIVL++NI
Sbjct: 102 STWQFNFKFNLSEDMYAQDSIDLLQNSGIQFKKHEEDGIDPIDFAELLMSSGIVLVENIK 161
Query: 77 WLSFHSGYDFGYLLKLLTDQNLPHEENDFFERLRLYFPTVYDVKYLMKLCKNLKGGLQEV 136
WL FHSGYDFGYLLKLLTDQNLP +E++FF+ L +YFP ++D+KYLMK CKNLKGGLQEV
Sbjct: 162 WLCFHSGYDFGYLLKLLTDQNLPPDESEFFDLLHIYFPNIFDIKYLMKSCKNLKGGLQEV 221
Query: 137 ADQLELRRVGPQHQAGSDSLLTGMAFFKIKEIFFDGNIEST--SGHLYGLGAPFTTNANN 194
ADQLELRRVGPQHQAGSD+LLTGMAFFK++E+FF+ NI+ SGHLYGLG F N N
Sbjct: 222 ADQLELRRVGPQHQAGSDALLTGMAFFKMREMFFEDNIDHAKYSGHLYGLGTSFIVNGTN 281
Query: 195 FQDNVDSGNSS 205
F D+ NS+
Sbjct: 282 FHDSNGETNSA 292
Score = 60.5 bits (140), Expect = 2e-09
Identities = 26/28 (92%), Positives = 27/28 (96%)
Query: 1 MDTEFPGVVARPIGEFRSTADYQYQLLR 28
MDTEFPGVVARP+GEFRSTADY YQLLR
Sbjct: 48 MDTEFPGVVARPVGEFRSTADYHYQLLR 75
>AE014296-2077|AAF49972.2| 297|Drosophila melanogaster CG5684-PA,
isoform A protein.
Length = 297
Score = 291 bits (715), Expect = 3e-79
Identities = 134/191 (70%), Positives = 161/191 (84%), Gaps = 3/191 (1%)
Query: 18 STADYQYQL-LREDMYAQDSIDLLQNSGLQFREHEEHGIEPLEFAELLMSSGIVLMDNIN 76
ST + ++ L EDMYAQDSIDLLQNSG+QF++HEE GI+P++FAELLMSSGIVL++NI
Sbjct: 106 STWQFNFKFNLSEDMYAQDSIDLLQNSGIQFKKHEEDGIDPIDFAELLMSSGIVLVENIK 165
Query: 77 WLSFHSGYDFGYLLKLLTDQNLPHEENDFFERLRLYFPTVYDVKYLMKLCKNLKGGLQEV 136
WL FHSGYDFGYLLKLLTDQNLP +E++FF+ L +YFP ++D+KYLMK CKNLKGGLQEV
Sbjct: 166 WLCFHSGYDFGYLLKLLTDQNLPPDESEFFDLLHIYFPNIFDIKYLMKSCKNLKGGLQEV 225
Query: 137 ADQLELRRVGPQHQAGSDSLLTGMAFFKIKEIFFDGNIEST--SGHLYGLGAPFTTNANN 194
ADQLELRRVGPQHQAGSD+LLTGMAFFK++E+FF+ NI+ SGHLYGLG F N N
Sbjct: 226 ADQLELRRVGPQHQAGSDALLTGMAFFKMREMFFEDNIDHAKYSGHLYGLGTSFIVNGTN 285
Query: 195 FQDNVDSGNSS 205
F D+ NS+
Sbjct: 286 FHDSNGETNSA 296
Score = 60.5 bits (140), Expect = 2e-09
Identities = 26/28 (92%), Positives = 27/28 (96%)
Query: 1 MDTEFPGVVARPIGEFRSTADYQYQLLR 28
MDTEFPGVVARP+GEFRSTADY YQLLR
Sbjct: 52 MDTEFPGVVARPVGEFRSTADYHYQLLR 79
>BT001830-1|AAN71585.1| 293|Drosophila melanogaster RH46192p
protein.
Length = 293
Score = 289 bits (710), Expect = 1e-78
Identities = 133/191 (69%), Positives = 161/191 (84%), Gaps = 3/191 (1%)
Query: 18 STADYQYQL-LREDMYAQDSIDLLQNSGLQFREHEEHGIEPLEFAELLMSSGIVLMDNIN 76
ST + ++ L EDMYAQDSIDLLQNSG+QF++HEE GI+P++FAELLMSSGIVL++NI
Sbjct: 102 STWQFNFKFNLSEDMYAQDSIDLLQNSGIQFKKHEEDGIDPIDFAELLMSSGIVLVENIK 161
Query: 77 WLSFHSGYDFGYLLKLLTDQNLPHEENDFFERLRLYFPTVYDVKYLMKLCKNLKGGLQEV 136
WL FHSGYDFGYLLKLLTDQNLP +E++FF+ L +YFP ++++KYLMK CKNLKGGLQEV
Sbjct: 162 WLCFHSGYDFGYLLKLLTDQNLPPDESEFFDLLHIYFPNIFNIKYLMKSCKNLKGGLQEV 221
Query: 137 ADQLELRRVGPQHQAGSDSLLTGMAFFKIKEIFFDGNIEST--SGHLYGLGAPFTTNANN 194
ADQLELRRVGPQHQAGSD+LLTGMAFFK++E+FF+ NI+ SGHLYGLG F N N
Sbjct: 222 ADQLELRRVGPQHQAGSDALLTGMAFFKMREMFFEDNIDHAKYSGHLYGLGTSFIVNGTN 281
Query: 195 FQDNVDSGNSS 205
F D+ NS+
Sbjct: 282 FHDSNGETNSA 292
Score = 60.5 bits (140), Expect = 2e-09
Identities = 26/28 (92%), Positives = 27/28 (96%)
Query: 1 MDTEFPGVVARPIGEFRSTADYQYQLLR 28
MDTEFPGVVARP+GEFRSTADY YQLLR
Sbjct: 48 MDTEFPGVVARPVGEFRSTADYHYQLLR 75
>AY122139-1|AAM52651.1| 271|Drosophila melanogaster GM14316p
protein.
Length = 271
Score = 253 bits (619), Expect = 1e-67
Identities = 114/152 (75%), Positives = 137/152 (90%), Gaps = 1/152 (0%)
Query: 18 STADYQYQL-LREDMYAQDSIDLLQNSGLQFREHEEHGIEPLEFAELLMSSGIVLMDNIN 76
ST + ++ L EDMYAQDSIDLLQNSG+QF++HEE GI+P++FAELLMSSGIVL++NI
Sbjct: 16 STWQFNFKFNLSEDMYAQDSIDLLQNSGIQFKKHEEDGIDPIDFAELLMSSGIVLVENIK 75
Query: 77 WLSFHSGYDFGYLLKLLTDQNLPHEENDFFERLRLYFPTVYDVKYLMKLCKNLKGGLQEV 136
WL FHSGYDFGYLLKLLTDQNLP +E++FF+ L + FP ++D+KYLMK CKNLKGGLQEV
Sbjct: 76 WLCFHSGYDFGYLLKLLTDQNLPPDESEFFDLLHIIFPNIFDIKYLMKSCKNLKGGLQEV 135
Query: 137 ADQLELRRVGPQHQAGSDSLLTGMAFFKIKEI 168
ADQLELRRVGPQHQAGSD+LLTGMAFFK++E+
Sbjct: 136 ADQLELRRVGPQHQAGSDALLTGMAFFKMREV 167
>U01842-1|AAA03718.1| 1066|Drosophila melanogaster kinesin-like
protein protein.
Length = 1066
Score = 31.1 bits (67), Expect = 1.1
Identities = 18/47 (38%), Positives = 25/47 (53%), Gaps = 5/47 (10%)
Query: 21 DYQYQLLREDM-----YAQDSIDLLQNSGLQFREHEEHGIEPLEFAE 62
D + QL+ ED +A + DL+Q S QF EH EH + L+ E
Sbjct: 867 DARQQLITEDRQRFIGHATVATDLVQESNRQFSEHAEHQRQQLQICE 913
>AY069442-1|AAL39587.1| 1066|Drosophila melanogaster LD15641p
protein.
Length = 1066
Score = 31.1 bits (67), Expect = 1.1
Identities = 18/47 (38%), Positives = 25/47 (53%), Gaps = 5/47 (10%)
Query: 21 DYQYQLLREDM-----YAQDSIDLLQNSGLQFREHEEHGIEPLEFAE 62
D + QL+ ED +A + DL+Q S QF EH EH + L+ E
Sbjct: 867 DARQQLITEDRQRFIGHATVATDLVQESNRQFSEHAEHQRQQLQICE 913
>AE014296-198|AAF47458.2| 1066|Drosophila melanogaster CG9191-PA
protein.
Length = 1066
Score = 31.1 bits (67), Expect = 1.1
Identities = 18/47 (38%), Positives = 25/47 (53%), Gaps = 5/47 (10%)
Query: 21 DYQYQLLREDM-----YAQDSIDLLQNSGLQFREHEEHGIEPLEFAE 62
D + QL+ ED +A + DL+Q S QF EH EH + L+ E
Sbjct: 867 DARQQLITEDRQRFIGHATVATDLVQESNRQFSEHAEHQRQQLQICE 913
>AY051863-1|AAK93287.1| 1059|Drosophila melanogaster LD35990p
protein.
Length = 1059
Score = 29.5 bits (63), Expect = 3.4
Identities = 19/64 (29%), Positives = 34/64 (53%), Gaps = 3/64 (4%)
Query: 97 NLPHEENDFFERLRLYFPTVYDVKYLMKLCKNLKGGLQEVADQLE--LRRVGPQHQAGSD 154
+L HE++ +L VY ++Y +K CK + L++ LE LR++ +++ D
Sbjct: 678 SLEHEKDTLLHQLDTKTERVYKLEYELKDCKEKRNALEQNVKDLEDQLRKLANRNRQ-RD 736
Query: 155 SLLT 158
S LT
Sbjct: 737 SELT 740
>AE014296-2475|AAF49663.3| 1059|Drosophila melanogaster CG17081-PA
protein.
Length = 1059
Score = 29.5 bits (63), Expect = 3.4
Identities = 19/64 (29%), Positives = 34/64 (53%), Gaps = 3/64 (4%)
Query: 97 NLPHEENDFFERLRLYFPTVYDVKYLMKLCKNLKGGLQEVADQLE--LRRVGPQHQAGSD 154
+L HE++ +L VY ++Y +K CK + L++ LE LR++ +++ D
Sbjct: 678 SLEHEKDTLLHQLDTKTERVYKLEYELKDCKEKRNALEQNVKDLEDQLRKLANRNRQ-RD 736
Query: 155 SLLT 158
S LT
Sbjct: 737 SELT 740
>DQ782382-1|ABG91087.1| 1066|Drosophila melanogaster microtubule
dependent motor proteinprotein.
Length = 1066
Score = 28.3 bits (60), Expect = 7.9
Identities = 17/51 (33%), Positives = 25/51 (49%), Gaps = 5/51 (9%)
Query: 17 RSTADYQYQLLREDM-----YAQDSIDLLQNSGLQFREHEEHGIEPLEFAE 62
+ D + QL+ ED +A + DL+Q S QF EH E + L+ E
Sbjct: 863 QQVVDARQQLITEDRQRFIGHATVATDLVQESNRQFSEHAEQQRQQLQICE 913
>DQ782381-1|ABG91086.1| 1066|Drosophila melanogaster microtubule
dependent motor proteinprotein.
Length = 1066
Score = 28.3 bits (60), Expect = 7.9
Identities = 17/51 (33%), Positives = 25/51 (49%), Gaps = 5/51 (9%)
Query: 17 RSTADYQYQLLREDM-----YAQDSIDLLQNSGLQFREHEEHGIEPLEFAE 62
+ D + QL+ ED +A + DL+Q S QF EH E + L+ E
Sbjct: 863 QQVVDARQQLITEDRQRFIGHATVATDLVQESNRQFSEHAEQQRQQLQICE 913
Database: fruitfly
Posted date: Oct 5, 2007 11:13 AM
Number of letters in database: 24,830,863
Number of sequences in database: 52,641
Lambda K H
0.320 0.139 0.409
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,361,060
Number of Sequences: 52641
Number of extensions: 435409
Number of successful extensions: 748
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 724
Number of HSP's gapped (non-prelim): 20
length of query: 205
length of database: 24,830,863
effective HSP length: 82
effective length of query: 123
effective length of database: 20,514,301
effective search space: 2523259023
effective search space used: 2523259023
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 60 (28.3 bits)
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