GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001217-TA|BGIBMGA001217-PA|IPR012337|Polynucleotidyl
transferase, Ribonuclease H fold, IPR006941|Ribonuclease CAF1
         (205 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U21854-1|AAA87454.1|  310|Caenorhabditis elegans cCAF1 protein p...   158   2e-39
AL132860-29|CAB60501.1|  310|Caenorhabditis elegans Hypothetical...   158   2e-39
Z74474-1|CAA98954.2|  566|Caenorhabditis elegans Hypothetical pr...    29   2.4  
AL032620-1|CAA21487.1|  354|Caenorhabditis elegans Hypothetical ...    29   2.4  
Z81039-3|CAB02774.1| 2150|Caenorhabditis elegans Hypothetical pr...    27   7.2  
M85149-1|AAA28144.1| 2150|Caenorhabditis elegans zinc finger pro...    27   7.2  
Z82083-8|CAB04968.2|  374|Caenorhabditis elegans Hypothetical pr...    27   9.5  
Z81592-3|CAB04729.2|  389|Caenorhabditis elegans Hypothetical pr...    27   9.5  
AL021480-6|CAD90181.1|  374|Caenorhabditis elegans Hypothetical ...    27   9.5  

>U21854-1|AAA87454.1|  310|Caenorhabditis elegans cCAF1 protein
           protein.
          Length = 310

 Score =  158 bits (384), Expect = 2e-39
 Identities = 84/185 (45%), Positives = 120/185 (64%), Gaps = 12/185 (6%)

Query: 14  GEFRSTAD-YQYQL---LREDMYAQDSIDLLQNSGLQFREHEEHGIEPLEFAELLMSSGI 69
           GE   T D +Q+       EDM++ +S+++L+ +G+ F   + +GI    F ELL +SG+
Sbjct: 97  GELPPTGDVWQFNFNFSFAEDMFSHESVEMLRQAGIDFTLLQNNGIPTAVFGELLTTSGL 156

Query: 70  VLMDNINWLSFHSGYDFGYLLKLLTDQNLPHEENDFFERLRLYFPTVYDVKYLMKL--CK 127
           +    I WL+F SGYDFGYLLK +T  +LP EE+ FF   +  FPT +D+K L++   C 
Sbjct: 157 ITDPRITWLTFSSGYDFGYLLKSITLGDLPKEESTFFMCHKTLFPTSFDIKILLRTPNCA 216

Query: 128 N--LKGGLQEVADQLELRRVGPQHQAGSDSLLTGMAFFKIKEIFFDGNIESTS----GHL 181
           +  LKGGLQEVADQL+++R G +HQAGSD+LLT   FFKIK+ FF  N    +    GH+
Sbjct: 217 SAKLKGGLQEVADQLDVKRQGVRHQAGSDALLTAATFFKIKKQFFGDNWNQIAPLICGHM 276

Query: 182 YGLGA 186
           +GLG+
Sbjct: 277 FGLGS 281



 Score = 44.0 bits (99), Expect = 8e-05
 Identities = 18/25 (72%), Positives = 20/25 (80%)

Query: 1  MDTEFPGVVARPIGEFRSTADYQYQ 25
          MDTEFPGVVA P+G FRS  D+ YQ
Sbjct: 50 MDTEFPGVVATPLGTFRSKEDFNYQ 74


>AL132860-29|CAB60501.1|  310|Caenorhabditis elegans Hypothetical
           protein Y56A3A.20 protein.
          Length = 310

 Score =  158 bits (384), Expect = 2e-39
 Identities = 84/185 (45%), Positives = 120/185 (64%), Gaps = 12/185 (6%)

Query: 14  GEFRSTAD-YQYQL---LREDMYAQDSIDLLQNSGLQFREHEEHGIEPLEFAELLMSSGI 69
           GE   T D +Q+       EDM++ +S+++L+ +G+ F   + +GI    F ELL +SG+
Sbjct: 97  GELPPTGDVWQFNFNFSFAEDMFSHESVEMLRQAGIDFTLLQNNGIPTAVFGELLTTSGL 156

Query: 70  VLMDNINWLSFHSGYDFGYLLKLLTDQNLPHEENDFFERLRLYFPTVYDVKYLMKL--CK 127
           +    I WL+F SGYDFGYLLK +T  +LP EE+ FF   +  FPT +D+K L++   C 
Sbjct: 157 ITDPRITWLTFSSGYDFGYLLKSITLGDLPKEESTFFMCHKTLFPTSFDIKILLRTPNCA 216

Query: 128 N--LKGGLQEVADQLELRRVGPQHQAGSDSLLTGMAFFKIKEIFFDGNIESTS----GHL 181
           +  LKGGLQEVADQL+++R G +HQAGSD+LLT   FFKIK+ FF  N    +    GH+
Sbjct: 217 SAKLKGGLQEVADQLDVKRQGVRHQAGSDALLTAATFFKIKKQFFGDNWNQIAPLICGHM 276

Query: 182 YGLGA 186
           +GLG+
Sbjct: 277 FGLGS 281



 Score = 44.0 bits (99), Expect = 8e-05
 Identities = 18/25 (72%), Positives = 20/25 (80%)

Query: 1  MDTEFPGVVARPIGEFRSTADYQYQ 25
          MDTEFPGVVA P+G FRS  D+ YQ
Sbjct: 50 MDTEFPGVVATPLGTFRSKEDFNYQ 74


>Z74474-1|CAA98954.2|  566|Caenorhabditis elegans Hypothetical
           protein K10C8.1 protein.
          Length = 566

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 14/43 (32%), Positives = 22/43 (51%)

Query: 129 LKGGLQEVADQLELRRVGPQHQAGSDSLLTGMAFFKIKEIFFD 171
           L+G ++   + LE       H AG DS +TG  F K+  I+ +
Sbjct: 354 LRGFIEPWMNPLEDESENVYHNAGFDSYVTGEVFLKLAHIYIN 396


>AL032620-1|CAA21487.1|  354|Caenorhabditis elegans Hypothetical
           protein Y36E3A.1 protein.
          Length = 354

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 18/56 (32%), Positives = 29/56 (51%), Gaps = 2/56 (3%)

Query: 92  LLTDQNLPHEENDFFERLRLYFPTVYDVKYLMKLCKNLKGGL--QEVADQLELRRV 145
           +L  Q+L H E     +LR+       +K ++    NLK G    E+A+++EL RV
Sbjct: 260 ILPIQSLFHFEKFLIHKLRITVDDAIKIKEMLDKPNNLKDGYFRVEIANKIELARV 315


>Z81039-3|CAB02774.1| 2150|Caenorhabditis elegans Hypothetical
           protein C25D7.3 protein.
          Length = 2150

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 20/61 (32%), Positives = 34/61 (55%), Gaps = 1/61 (1%)

Query: 85  DFGYLLKLLTDQNLPHEENDFFERLRLYFPTVYDVKYLMKLCKNLKGGLQEVADQLELRR 144
           DF +  + + ++N   E+ +F ERL+L      DVKY  ++    KG LQ   ++L L+R
Sbjct: 694 DFSFPEEKMLEKNRLLEKLNFEERLQLDALMSKDVKYKPRMIPE-KGFLQLQDEKLILKR 752

Query: 145 V 145
           +
Sbjct: 753 L 753


>M85149-1|AAA28144.1| 2150|Caenorhabditis elegans zinc finger
           protein protein.
          Length = 2150

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 20/61 (32%), Positives = 34/61 (55%), Gaps = 1/61 (1%)

Query: 85  DFGYLLKLLTDQNLPHEENDFFERLRLYFPTVYDVKYLMKLCKNLKGGLQEVADQLELRR 144
           DF +  + + ++N   E+ +F ERL+L      DVKY  ++    KG LQ   ++L L+R
Sbjct: 694 DFSFPEEKMLEKNRLLEKLNFEERLQLDALMSKDVKYKPRMIPE-KGFLQLQDEKLILKR 752

Query: 145 V 145
           +
Sbjct: 753 L 753


>Z82083-8|CAB04968.2|  374|Caenorhabditis elegans Hypothetical
           protein ZK1010.2 protein.
          Length = 374

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 19/72 (26%), Positives = 33/72 (45%), Gaps = 1/72 (1%)

Query: 6   PGVVARPIGEFRSTADYQYQLLREDMYAQDSIDLLQNSGLQFREHEEHGIEPLEFAEL-L 64
           P VVA  + E  +  +         MY   +ID   +  L F +  E+ I P E +E+ +
Sbjct: 66  PSVVAMALSESLNLNEVIMDAQLNGMYNITAIDEDADDSLHFVKKLEYTINPGELSEIFV 125

Query: 65  MSSGIVLMDNIN 76
              G+V+  N++
Sbjct: 126 FRDGVVVFWNVD 137


>Z81592-3|CAB04729.2|  389|Caenorhabditis elegans Hypothetical
           protein T16G1.3 protein.
          Length = 389

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 11/30 (36%), Positives = 17/30 (56%)

Query: 86  FGYLLKLLTDQNLPHEENDFFERLRLYFPT 115
           + Y ++ L D+N+P+      E  RLYF T
Sbjct: 301 YEYFIEALEDKNVPYTLEQLKESYRLYFVT 330


>AL021480-6|CAD90181.1|  374|Caenorhabditis elegans Hypothetical
           protein ZK1010.2 protein.
          Length = 374

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 19/72 (26%), Positives = 33/72 (45%), Gaps = 1/72 (1%)

Query: 6   PGVVARPIGEFRSTADYQYQLLREDMYAQDSIDLLQNSGLQFREHEEHGIEPLEFAEL-L 64
           P VVA  + E  +  +         MY   +ID   +  L F +  E+ I P E +E+ +
Sbjct: 66  PSVVAMALSESLNLNEVIMDAQLNGMYNITAIDEDADDSLHFVKKLEYTINPGELSEIFV 125

Query: 65  MSSGIVLMDNIN 76
              G+V+  N++
Sbjct: 126 FRDGVVVFWNVD 137


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.320    0.139    0.409 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,229,631
Number of Sequences: 27539
Number of extensions: 217741
Number of successful extensions: 393
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 385
Number of HSP's gapped (non-prelim): 11
length of query: 205
length of database: 12,573,161
effective HSP length: 78
effective length of query: 127
effective length of database: 10,425,119
effective search space: 1323990113
effective search space used: 1323990113
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 57 (27.1 bits)