GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001217-TA|BGIBMGA001217-PA|IPR012337|Polynucleotidyl
transferase, Ribonuclease H fold, IPR006941|Ribonuclease CAF1
         (205 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    22   3.6  
AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein...    21   8.3  

>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 22.2 bits (45), Expect = 3.6
 Identities = 22/80 (27%), Positives = 36/80 (45%), Gaps = 7/80 (8%)

Query: 58  LEFAELLMSSGI----VLMDNINWLSFHSGYDFGYL---LKLLTDQNLPHEENDFFERLR 110
           +EF EL M  G        D +  +   +G+D  Y     +L+ +  L H   D+FE+L 
Sbjct: 210 IEFTELCMKLGWKSARTRFDILPLILSANGHDPDYFDIPNELVLEVPLSHPTYDWFEKLE 269

Query: 111 LYFPTVYDVKYLMKLCKNLK 130
           L +  V  V  ++  C  L+
Sbjct: 270 LKWFAVPAVSGMVFDCGGLE 289


>AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein
           protein.
          Length = 411

 Score = 21.0 bits (42), Expect = 8.3
 Identities = 7/18 (38%), Positives = 12/18 (66%)

Query: 110 RLYFPTVYDVKYLMKLCK 127
           R +F T++D+ +L   CK
Sbjct: 380 RNFFITMFDLDFLTNACK 397


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.320    0.139    0.409 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 58,785
Number of Sequences: 429
Number of extensions: 2703
Number of successful extensions: 3
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 2
Number of HSP's gapped (non-prelim): 2
length of query: 205
length of database: 140,377
effective HSP length: 55
effective length of query: 150
effective length of database: 116,782
effective search space: 17517300
effective search space used: 17517300
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 42 (21.0 bits)