Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001217-TA|BGIBMGA001217-PA|IPR012337|Polynucleotidyl
transferase, Ribonuclease H fold, IPR006941|Ribonuclease CAF1
(205 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g32070.1 68415.m03919 CCR4-NOT transcription complex protein,... 204 2e-53
At1g80780.2 68414.m09478 CCR4-NOT transcription complex protein,... 200 5e-52
At1g80780.1 68414.m09477 CCR4-NOT transcription complex protein,... 200 5e-52
At1g15920.2 68414.m01910 CCR4-NOT transcription complex protein,... 190 4e-49
At1g15920.1 68414.m01909 CCR4-NOT transcription complex protein,... 190 4e-49
At5g10960.1 68418.m01273 CCR4-NOT transcription complex protein,... 186 9e-48
At5g22250.1 68418.m02591 CCR4-NOT transcription complex protein,... 150 7e-37
At3g44260.1 68416.m04750 CCR4-NOT transcription complex protein,... 145 2e-35
At1g61470.1 68414.m06926 CCR4-NOT transcription complex protein,... 87 8e-18
At1g06450.1 68414.m00683 CCR4-NOT transcription complex protein,... 87 1e-17
At3g44240.1 68416.m04747 CCR4-NOT transcription complex protein,... 85 3e-17
At1g27820.1 68414.m03409 CCR4-NOT transcription complex protein,... 78 5e-15
At1g27890.1 68414.m03417 CCR4-NOT transcription complex protein,... 77 1e-14
At5g48220.1 68418.m05957 indole-3-glycerol phosphate synthase, p... 29 2.9
At5g26940.4 68418.m03215 exonuclease family protein contains exo... 29 2.9
At5g26940.3 68418.m03214 exonuclease family protein contains exo... 29 2.9
At5g26940.2 68418.m03213 exonuclease family protein contains exo... 29 2.9
At5g26940.1 68418.m03212 exonuclease family protein contains exo... 29 2.9
At1g30570.1 68414.m03740 protein kinase family protein contains ... 28 3.9
At5g08310.1 68418.m00978 pentatricopeptide (PPR) repeat-containi... 28 5.1
At3g14270.1 68416.m01806 phosphatidylinositol-4-phosphate 5-kina... 28 5.1
At1g77130.1 68414.m08985 glycogenin glucosyltransferase (glycoge... 27 9.0
>At2g32070.1 68415.m03919 CCR4-NOT transcription complex protein,
putative similar to SWISS-PROT:Q60809 CCR4-NOT
transcription complex, subunit 7 (CCR4-associated factor
1, (CAF1) [Mus musculus]
Length = 275
Score = 204 bits (499), Expect = 2e-53
Identities = 95/159 (59%), Positives = 122/159 (76%)
Query: 27 LREDMYAQDSIDLLQNSGLQFREHEEHGIEPLEFAELLMSSGIVLMDNINWLSFHSGYDF 86
L D+YA DSI+LL+ SG+ F ++ E GI+ FAELLMSSGIVL +N++W++FHSGYDF
Sbjct: 109 LESDIYATDSIELLRQSGIDFVKNNEFGIDSKRFAELLMSSGIVLNENVHWVTFHSGYDF 168
Query: 87 GYLLKLLTDQNLPHEENDFFERLRLYFPTVYDVKYLMKLCKNLKGGLQEVADQLELRRVG 146
GYLLKLLT QNLP + FFE + +YFP VYD+K+LMK C +L GGL ++A+ L++ RVG
Sbjct: 169 GYLLKLLTCQNLPETQTGFFEMISVYFPRVYDIKHLMKFCNSLHGGLNKLAELLDVERVG 228
Query: 147 PQHQAGSDSLLTGMAFFKIKEIFFDGNIESTSGHLYGLG 185
HQAGSDSLLT F K++E FF G++E SG LYGLG
Sbjct: 229 ICHQAGSDSLLTSCTFRKLQENFFIGSMEKYSGVLYGLG 267
Score = 48.4 bits (110), Expect = 3e-06
Identities = 45/150 (30%), Positives = 68/150 (45%), Gaps = 29/150 (19%)
Query: 1 MDTEFPGVVARPIGEFRSTADYQYQLLREDMYAQDSIDLLQNSGLQFREHE--------- 51
MDTEFPG+V RP+G F++ +Y Y+ L+ ++ I L GL F + +
Sbjct: 39 MDTEFPGIVCRPVGTFKTNTEYHYETLKTNVNILKMIQL----GLTFSDEKGNLPTCGTD 94
Query: 52 -EHGIEPLEFAELLMSSGIVLMDNINWL-----SFHSGYDFGY----LLKLLTDQNLPHE 101
++ I F E + S I D+I L F +FG +LL +
Sbjct: 95 NKYCIWQFNFREFDLESDIYATDSIELLRQSGIDFVKNNEFGIDSKRFAELLMSSGIVLN 154
Query: 102 ENDFFERLRLYFPTVYDVKYLMKL--CKNL 129
EN + + F + YD YL+KL C+NL
Sbjct: 155 ENVHW----VTFHSGYDFGYLLKLLTCQNL 180
>At1g80780.2 68414.m09478 CCR4-NOT transcription complex protein,
putative similar to SWISS-PROT:Q60809 CCR4-NOT
transcription complex, subunit 7 (CCR4-associated factor
1, (CAF1) [Mus musculus]
Length = 274
Score = 200 bits (488), Expect = 5e-52
Identities = 94/159 (59%), Positives = 120/159 (75%)
Query: 27 LREDMYAQDSIDLLQNSGLQFREHEEHGIEPLEFAELLMSSGIVLMDNINWLSFHSGYDF 86
L D++A DSI+LL+ SG+ ++ GI+ FAELLMSSGIVL +N++W++FHSGYDF
Sbjct: 108 LDSDIFALDSIELLKQSGIDLAKNTLDGIDSKRFAELLMSSGIVLNENVHWVTFHSGYDF 167
Query: 87 GYLLKLLTDQNLPHEENDFFERLRLYFPTVYDVKYLMKLCKNLKGGLQEVADQLELRRVG 146
GYLLKLLT QNLP + DFF+ + +YFPTVYD+K+LMK C +L GGL ++A+ LE+ RVG
Sbjct: 168 GYLLKLLTCQNLPDSQTDFFKLINVYFPTVYDIKHLMKFCNSLHGGLNKLAELLEVERVG 227
Query: 147 PQHQAGSDSLLTGMAFFKIKEIFFDGNIESTSGHLYGLG 185
HQAGSDSLLT F K+KE FF G + SG LYGLG
Sbjct: 228 ICHQAGSDSLLTSCTFRKLKENFFVGPLHKYSGVLYGLG 266
Score = 54.4 bits (125), Expect = 5e-08
Identities = 45/145 (31%), Positives = 67/145 (46%), Gaps = 20/145 (13%)
Query: 1 MDTEFPGVVARPIGEFRSTADYQYQLLREDMYAQDSIDL-----LQNSGLQFREHEEHGI 55
MDTEFPG+V RP+G F+S ADY Y+ L+ ++ I L + L +++ I
Sbjct: 39 MDTEFPGIVVRPVGTFKSNADYHYETLKTNVNILKMIQLGLTFSNEQGNLPTCGTDKYCI 98
Query: 56 EPLEFAELLMSSGIVLMDNINWL---------SFHSGYDFGYLLKLLTDQNLPHEENDFF 106
F E + S I +D+I L + G D +LL + EN +
Sbjct: 99 WQFNFREFDLDSDIFALDSIELLKQSGIDLAKNTLDGIDSKRFAELLMSSGIVLNENVHW 158
Query: 107 ERLRLYFPTVYDVKYLMKL--CKNL 129
+ F + YD YL+KL C+NL
Sbjct: 159 ----VTFHSGYDFGYLLKLLTCQNL 179
>At1g80780.1 68414.m09477 CCR4-NOT transcription complex protein,
putative similar to SWISS-PROT:Q60809 CCR4-NOT
transcription complex, subunit 7 (CCR4-associated factor
1, (CAF1) [Mus musculus]
Length = 274
Score = 200 bits (488), Expect = 5e-52
Identities = 94/159 (59%), Positives = 120/159 (75%)
Query: 27 LREDMYAQDSIDLLQNSGLQFREHEEHGIEPLEFAELLMSSGIVLMDNINWLSFHSGYDF 86
L D++A DSI+LL+ SG+ ++ GI+ FAELLMSSGIVL +N++W++FHSGYDF
Sbjct: 108 LDSDIFALDSIELLKQSGIDLAKNTLDGIDSKRFAELLMSSGIVLNENVHWVTFHSGYDF 167
Query: 87 GYLLKLLTDQNLPHEENDFFERLRLYFPTVYDVKYLMKLCKNLKGGLQEVADQLELRRVG 146
GYLLKLLT QNLP + DFF+ + +YFPTVYD+K+LMK C +L GGL ++A+ LE+ RVG
Sbjct: 168 GYLLKLLTCQNLPDSQTDFFKLINVYFPTVYDIKHLMKFCNSLHGGLNKLAELLEVERVG 227
Query: 147 PQHQAGSDSLLTGMAFFKIKEIFFDGNIESTSGHLYGLG 185
HQAGSDSLLT F K+KE FF G + SG LYGLG
Sbjct: 228 ICHQAGSDSLLTSCTFRKLKENFFVGPLHKYSGVLYGLG 266
Score = 54.4 bits (125), Expect = 5e-08
Identities = 45/145 (31%), Positives = 67/145 (46%), Gaps = 20/145 (13%)
Query: 1 MDTEFPGVVARPIGEFRSTADYQYQLLREDMYAQDSIDL-----LQNSGLQFREHEEHGI 55
MDTEFPG+V RP+G F+S ADY Y+ L+ ++ I L + L +++ I
Sbjct: 39 MDTEFPGIVVRPVGTFKSNADYHYETLKTNVNILKMIQLGLTFSNEQGNLPTCGTDKYCI 98
Query: 56 EPLEFAELLMSSGIVLMDNINWL---------SFHSGYDFGYLLKLLTDQNLPHEENDFF 106
F E + S I +D+I L + G D +LL + EN +
Sbjct: 99 WQFNFREFDLDSDIFALDSIELLKQSGIDLAKNTLDGIDSKRFAELLMSSGIVLNENVHW 158
Query: 107 ERLRLYFPTVYDVKYLMKL--CKNL 129
+ F + YD YL+KL C+NL
Sbjct: 159 ----VTFHSGYDFGYLLKLLTCQNL 179
>At1g15920.2 68414.m01910 CCR4-NOT transcription complex protein,
putative similar to SWISS-PROT:Q60809 CCR4-NOT
transcription complex, subunit 7 (CCR4-associated factor
1, (CAF1) [Mus musculus]
Length = 286
Score = 190 bits (464), Expect = 4e-49
Identities = 86/158 (54%), Positives = 116/158 (73%)
Query: 30 DMYAQDSIDLLQNSGLQFREHEEHGIEPLEFAELLMSSGIVLMDNINWLSFHSGYDFGYL 89
DM+A DSI+LL+ S + ++ E G++ FAELLM SG+VL D I+W++FH GYDFGYL
Sbjct: 121 DMFALDSIELLRKSAIDLEKNNECGVDAKRFAELLMGSGVVLNDKIHWVTFHCGYDFGYL 180
Query: 90 LKLLTDQNLPHEENDFFERLRLYFPTVYDVKYLMKLCKNLKGGLQEVADQLELRRVGPQH 149
LKLL+ + LP E +DFF+++ +FP VYD+KYLM C NL GGL+++A+ L ++RVG H
Sbjct: 181 LKLLSGKELPEEISDFFDQMEKFFPVVYDIKYLMGFCTNLYGGLEKIAELLGVKRVGISH 240
Query: 150 QAGSDSLLTGMAFFKIKEIFFDGNIESTSGHLYGLGAP 187
QAGSDSLLT F K+KE FF G++ SG L+GL P
Sbjct: 241 QAGSDSLLTLRTFIKMKEFFFTGSLLKYSGFLFGLDNP 278
>At1g15920.1 68414.m01909 CCR4-NOT transcription complex protein,
putative similar to SWISS-PROT:Q60809 CCR4-NOT
transcription complex, subunit 7 (CCR4-associated factor
1, (CAF1) [Mus musculus]
Length = 286
Score = 190 bits (464), Expect = 4e-49
Identities = 86/158 (54%), Positives = 116/158 (73%)
Query: 30 DMYAQDSIDLLQNSGLQFREHEEHGIEPLEFAELLMSSGIVLMDNINWLSFHSGYDFGYL 89
DM+A DSI+LL+ S + ++ E G++ FAELLM SG+VL D I+W++FH GYDFGYL
Sbjct: 121 DMFALDSIELLRKSAIDLEKNNECGVDAKRFAELLMGSGVVLNDKIHWVTFHCGYDFGYL 180
Query: 90 LKLLTDQNLPHEENDFFERLRLYFPTVYDVKYLMKLCKNLKGGLQEVADQLELRRVGPQH 149
LKLL+ + LP E +DFF+++ +FP VYD+KYLM C NL GGL+++A+ L ++RVG H
Sbjct: 181 LKLLSGKELPEEISDFFDQMEKFFPVVYDIKYLMGFCTNLYGGLEKIAELLGVKRVGISH 240
Query: 150 QAGSDSLLTGMAFFKIKEIFFDGNIESTSGHLYGLGAP 187
QAGSDSLLT F K+KE FF G++ SG L+GL P
Sbjct: 241 QAGSDSLLTLRTFIKMKEFFFTGSLLKYSGFLFGLDNP 278
>At5g10960.1 68418.m01273 CCR4-NOT transcription complex protein,
putative similar to SWISS-PROT:Q9UFF9 CCR4-NOT
transcription complex, subunit 8 (CAF1-like protein,
CALIFp) [Homo sapiens]
Length = 277
Score = 186 bits (453), Expect = 9e-48
Identities = 87/157 (55%), Positives = 118/157 (75%)
Query: 29 EDMYAQDSIDLLQNSGLQFREHEEHGIEPLEFAELLMSSGIVLMDNINWLSFHSGYDFGY 88
ED+YA +SI+LL+ G+ F+++ E GI+ + F EL+MSSGIVL D I+W++FH GYDFGY
Sbjct: 110 EDIYASESIELLRQCGIDFKKNIEKGIDVVRFGELMMSSGIVLNDAISWVTFHGGYDFGY 169
Query: 89 LLKLLTDQNLPHEENDFFERLRLYFPTVYDVKYLMKLCKNLKGGLQEVADQLELRRVGPQ 148
L+KLLT + LP ++ DFF+ L +YFPTVYD+K+LM C L GGL +A+ + + RVG
Sbjct: 170 LVKLLTCKELPLKQADFFKLLYVYFPTVYDIKHLMTFCNGLFGGLNRLAELMGVERVGIC 229
Query: 149 HQAGSDSLLTGMAFFKIKEIFFDGNIESTSGHLYGLG 185
HQAGSDSLLT +F K+KE +F G+ E +G LYGLG
Sbjct: 230 HQAGSDSLLTLGSFRKLKERYFPGSTEKYTGVLYGLG 266
Score = 40.7 bits (91), Expect = 7e-04
Identities = 21/49 (42%), Positives = 31/49 (63%), Gaps = 4/49 (8%)
Query: 1 MDTEFPGVVARPIGEFRSTADYQYQLLREDMYAQDSIDLLQNSGLQFRE 49
MDTEFPGVV +P+ F+ D Y+ L+E++ D + L+Q GL F +
Sbjct: 39 MDTEFPGVVLKPVATFKYNNDLNYRTLKENV---DLLKLIQ-VGLTFSD 83
>At5g22250.1 68418.m02591 CCR4-NOT transcription complex protein,
putative similar to SWISS-PROT:Q60809 CCR4-NOT
transcription complex, subunit 7 (CCR4-associated factor
1, (CAF1) [Mus musculus]
Length = 278
Score = 150 bits (363), Expect = 7e-37
Identities = 75/162 (46%), Positives = 109/162 (67%), Gaps = 4/162 (2%)
Query: 27 LREDMYAQDSIDLLQNSGLQFREHEEHGIEPLEFAELLMSSGIVLMDNINWLSFHSGYDF 86
+ D +A DSI+LL+ G+ F + G+E FAEL+MSSG++ ++++W++FHS YDF
Sbjct: 114 VERDPHAPDSIELLRRHGIDFERNRREGVESERFAELMMSSGLICNESVSWVTFHSAYDF 173
Query: 87 GYLLKLLTDQNLPHEENDFFERLRLYF-PTVYDVKYLMKLC-KNLKGGLQEVADQLELRR 144
GYL+K+LT + LP +F LR +F VYDVK++M+ C + L GGL VA LE+ R
Sbjct: 174 GYLVKILTRRQLPVALREFLGLLRAFFGDRVYDVKHIMRFCEQRLYGGLDRVARSLEVNR 233
Query: 145 -VGPQHQAGSDSLLTGMAFFKIKEIFF-DGNIESTSGHLYGL 184
VG HQAGSDSLLT AF ++++++F + E +G LYGL
Sbjct: 234 AVGKCHQAGSDSLLTWQAFQRMRDLYFVEDGAEKHAGVLYGL 275
Score = 28.7 bits (61), Expect = 2.9
Identities = 16/43 (37%), Positives = 26/43 (60%), Gaps = 5/43 (11%)
Query: 1 MDTEFPGVVARPIGEF--RSTADYQYQLLREDMYAQDSIDLLQ 41
MDTEFPGV+ + + R +Y Y LL+ ++ D++ L+Q
Sbjct: 41 MDTEFPGVIYKADLDVLRRGNPNYLYNLLKSNV---DALSLIQ 80
>At3g44260.1 68416.m04750 CCR4-NOT transcription complex protein,
putative similar to SWISS-PROT:Q9UFF9 CCR4-NOT
transcription complex, subunit 8 (CAF1-like protein,
CALIFp) [Homo sapiens]
Length = 280
Score = 145 bits (352), Expect = 2e-35
Identities = 78/160 (48%), Positives = 108/160 (67%), Gaps = 6/160 (3%)
Query: 30 DMYAQDSIDLLQNSGLQFREHEEHGIEPLEFAELLMSSGIVLMDNINWLSFHSGYDFGYL 89
D +A DSI+LL+ G+ F + G+E FAEL+MSSG+V + ++W++FHS YDFGYL
Sbjct: 119 DAHAPDSIELLRRQGIDFERNCRDGVESERFAELMMSSGLVCNEEVSWVTFHSAYDFGYL 178
Query: 90 LKLLTDQNLPHEENDFFERLRLYF-PTVYDVKYLMKLC-KNLKGGLQEVADQLELRR-VG 146
+K+LT + LP +F +R+ F VYDVK++MK C + L GGL VA LE+ R VG
Sbjct: 179 MKILTRRELPGALGEFKRVMRVLFGERVYDVKHMMKFCERRLFGGLDRVARTLEVNRAVG 238
Query: 147 PQHQAGSDSLLTGMAFFKIKEIFF--DGNIESTSGHLYGL 184
HQAGSDSLLT AF ++++++F DG E +G LYGL
Sbjct: 239 KCHQAGSDSLLTWHAFQRMRDLYFVQDGP-EKHAGVLYGL 277
Score = 27.5 bits (58), Expect = 6.8
Identities = 16/41 (39%), Positives = 25/41 (60%), Gaps = 4/41 (9%)
Query: 1 MDTEFPGVVARPIGEFRSTADYQYQLLREDMYAQDSIDLLQ 41
MDTEFPGV+ + F + D Y LL+ ++ D++ L+Q
Sbjct: 46 MDTEFPGVIFKSDLRFTNPDDL-YTLLKANV---DALSLIQ 82
>At1g61470.1 68414.m06926 CCR4-NOT transcription complex protein,
putative similar to SWISS-PROT:Q60809 CCR4-NOT
transcription complex, subunit 7 (CCR4-associated factor
1, (CAF1) [Mus musculus]
Length = 278
Score = 87.0 bits (206), Expect = 8e-18
Identities = 59/148 (39%), Positives = 77/148 (52%), Gaps = 9/148 (6%)
Query: 36 SIDLLQNSGLQFREHEEHGIEPLEFAELLMSSGIVLMDN---INWLSFHSGYDFGYLLKL 92
SI L+N+GL + E GI EF M +L + + W++F YD YLLK
Sbjct: 96 SIAFLKNNGLDLDKIREEGIGIEEF---FMEFSQILNEKHGKMRWVTFQGSYDKAYLLKG 152
Query: 93 LTDQNLPHEENDFFERLR-LYFPTVYDVKYLMKLCKNLKG--GLQEVADQLELRRVGPQH 149
LT + LP +F E ++ L VYDVK + LC L GLQ +AD L++RRVG H
Sbjct: 153 LTRKPLPETSKEFDETVQQLLGRFVYDVKKMAGLCSGLSSRFGLQRIADVLQMRRVGKAH 212
Query: 150 QAGSDSLLTGMAFFKIKEIFFDGNIEST 177
AGSDS LT F K+ + EST
Sbjct: 213 HAGSDSELTARVFTKLIFDLVNSRKEST 240
>At1g06450.1 68414.m00683 CCR4-NOT transcription complex protein,
putative similar to SWISS-PROT:Q9UFF9 CCR4-NOT
transcription complex, subunit 8 (CAF1-like protein,
CALIFp) [Homo sapiens]
Length = 360
Score = 86.6 bits (205), Expect = 1e-17
Identities = 46/153 (30%), Positives = 77/153 (50%), Gaps = 5/153 (3%)
Query: 36 SIDLLQNSGLQFREHEEHGIEPLEFAEL-LMSSGIVLMDNINWLSFHSGYDFGYLLKLLT 94
SI+ L+ GL ++ + G++ + + + ++ +++F YDF Y L +L
Sbjct: 105 SIEFLRRHGLDLQKIRDEGVDMFGYGFFPKLMTVFRSQKHVEFVTFQGAYDFAYFLSILN 164
Query: 95 DQNLPHEENDFFERLRLYFPTVYDVKYLMKLCKNLKG--GLQEVADQLELRRVGPQHQAG 152
LP +F + F VYD K + C+ L GL ++A L++ RVG H AG
Sbjct: 165 HGKLPETHGEFATEVVKVFGQVYDTKVMAGFCEGLGEHLGLSKLAQLLQITRVGRAHHAG 224
Query: 153 SDSLLTGMAFFKIKEIFFDGNIESTSGHLYGLG 185
SDSL+T + F K+K ++ D G +YG+G
Sbjct: 225 SDSLMTALVFIKLKHVYEDSRF--ARGLIYGIG 255
>At3g44240.1 68416.m04747 CCR4-NOT transcription complex protein,
putative similar to SWISS-PROT:Q60809 CCR4-NOT
transcription complex, subunit 7 (CCR4-associated factor
1, (CAF1) [Mus musculus]
Length = 239
Score = 85.0 bits (201), Expect = 3e-17
Identities = 49/143 (34%), Positives = 71/143 (49%), Gaps = 2/143 (1%)
Query: 29 EDMYAQDSIDLLQNSGLQFREHEEHGIEPLEFAELLMSSGIVLMDNINWLSFHSGYDFGY 88
+D + SI+ L+ +GL R+ E GI F + NI W++FH YD Y
Sbjct: 77 DDARNEKSIEFLRRNGLDLRKIREEGIRIEGFFSEMFWMLKKTRRNITWVTFHGSYDIAY 136
Query: 89 LLKLLTDQNLPHEENDFFERLRLYFPTVYDVKYLMKLCKNLKG--GLQEVADQLELRRVG 146
LLK T + LP F + + +VYD+K + C+ L GL+ +A + L RVG
Sbjct: 137 LLKGFTGEALPVTSERFSKAVARVLGSVYDLKVMAGRCEGLSSRLGLETLAHEFGLNRVG 196
Query: 147 PQHQAGSDSLLTGMAFFKIKEIF 169
H AGS++ LT M F K+ F
Sbjct: 197 TAHHAGSNNELTAMVFAKVLSPF 219
>At1g27820.1 68414.m03409 CCR4-NOT transcription complex protein,
putative similar to SWISS-PROT:Q9UFF9 CCR4-NOT
transcription complex, subunit 8 (CAF1-like protein,
CALIFp) [Homo sapiens]
Length = 310
Score = 77.8 bits (183), Expect = 5e-15
Identities = 50/134 (37%), Positives = 70/134 (52%), Gaps = 4/134 (2%)
Query: 36 SIDLLQNSGLQFREHEEHGIEPLEFAELLMSSGIVLMDNINWLSFHSGYDFGYLLKLLTD 95
SI L+++GL + E GI EF I W++F YD YL+K LT
Sbjct: 101 SIAFLKSNGLNLDKIREEGIGIDEFFRDFSQILTEKDGKITWVNFQGSYDNAYLVKGLTG 160
Query: 96 -QNLPHEENDFFERLR-LYFPTVYDVKYLMKLCKNLKG--GLQEVADQLELRRVGPQHQA 151
+ LP + +F E ++ L V+DVK + + C L GLQ +AD L+++RVG H A
Sbjct: 161 GKPLPETKEEFHETVQQLLGKFVFDVKKIAESCSGLSSQFGLQRIADVLQMKRVGKAHHA 220
Query: 152 GSDSLLTGMAFFKI 165
GSDS LT F K+
Sbjct: 221 GSDSELTARVFTKL 234
>At1g27890.1 68414.m03417 CCR4-NOT transcription complex protein,
putative contains similarity to SWISS-PROT:Q9UFF9
CCR4-NOT transcription complex, subunit 8 (CAF1-like
protein, CALIFp) [Human]
Length = 302
Score = 76.6 bits (180), Expect = 1e-14
Identities = 50/134 (37%), Positives = 70/134 (52%), Gaps = 4/134 (2%)
Query: 36 SIDLLQNSGLQFREHEEHGIEPLEFAELLMSSGIVLMDNINWLSFHSGYDFGYLLKLLTD 95
SI L+++GL + E GI EF I W++F YD YL+K LT
Sbjct: 96 SIAFLKSNGLNLDKIGEEGIGIEEFFRDFSQILKEKDGKITWVNFQGSYDNAYLVKGLTG 155
Query: 96 -QNLPHEENDFFERL-RLYFPTVYDVKYLMKLCKNLKG--GLQEVADQLELRRVGPQHQA 151
+ LP + +F E + +L V+DVK + + C L GLQ +AD L+++RVG H A
Sbjct: 156 GKPLPETKEEFHETVEQLLGKFVFDVKKIAESCSGLSSRFGLQRIADVLQMKRVGKAHHA 215
Query: 152 GSDSLLTGMAFFKI 165
GSDS LT F K+
Sbjct: 216 GSDSELTARVFTKL 229
>At5g48220.1 68418.m05957 indole-3-glycerol phosphate synthase,
putative similar to SP|P49572
Length = 379
Score = 28.7 bits (61), Expect = 2.9
Identities = 14/29 (48%), Positives = 20/29 (68%), Gaps = 1/29 (3%)
Query: 118 DVKYLMKLCKNL-KGGLQEVADQLELRRV 145
D+KY++K+CK L L EV D+ E+ RV
Sbjct: 257 DIKYMIKICKILGMATLVEVHDEREMDRV 285
>At5g26940.4 68418.m03215 exonuclease family protein contains
exonuclease domain, Pfam:PF00929
Length = 316
Score = 28.7 bits (61), Expect = 2.9
Identities = 15/37 (40%), Positives = 19/37 (51%)
Query: 129 LKGGLQEVADQLELRRVGPQHQAGSDSLLTGMAFFKI 165
L L+ +AD L R G H+A SD LL F K+
Sbjct: 249 LSSSLEALADYYSLTREGDAHRALSDVLLLSKVFQKL 285
>At5g26940.3 68418.m03214 exonuclease family protein contains
exonuclease domain, Pfam:PF00929
Length = 316
Score = 28.7 bits (61), Expect = 2.9
Identities = 15/37 (40%), Positives = 19/37 (51%)
Query: 129 LKGGLQEVADQLELRRVGPQHQAGSDSLLTGMAFFKI 165
L L+ +AD L R G H+A SD LL F K+
Sbjct: 249 LSSSLEALADYYSLTREGDAHRALSDVLLLSKVFQKL 285
>At5g26940.2 68418.m03213 exonuclease family protein contains
exonuclease domain, Pfam:PF00929
Length = 316
Score = 28.7 bits (61), Expect = 2.9
Identities = 15/37 (40%), Positives = 19/37 (51%)
Query: 129 LKGGLQEVADQLELRRVGPQHQAGSDSLLTGMAFFKI 165
L L+ +AD L R G H+A SD LL F K+
Sbjct: 249 LSSSLEALADYYSLTREGDAHRALSDVLLLSKVFQKL 285
>At5g26940.1 68418.m03212 exonuclease family protein contains
exonuclease domain, Pfam:PF00929
Length = 316
Score = 28.7 bits (61), Expect = 2.9
Identities = 15/37 (40%), Positives = 19/37 (51%)
Query: 129 LKGGLQEVADQLELRRVGPQHQAGSDSLLTGMAFFKI 165
L L+ +AD L R G H+A SD LL F K+
Sbjct: 249 LSSSLEALADYYSLTREGDAHRALSDVLLLSKVFQKL 285
>At1g30570.1 68414.m03740 protein kinase family protein contains
protein kinase domain, Pfam:PF00069
Length = 849
Score = 28.3 bits (60), Expect = 3.9
Identities = 36/146 (24%), Positives = 70/146 (47%), Gaps = 18/146 (12%)
Query: 37 IDLLQNSGLQFREHEEHGIEPLEFAEL--LMSSGIVLMD--NINWLSFHSGYDFGYLLKL 92
+++ +S + + ++ + PL E +MS+ VL NI+W F +F YL++L
Sbjct: 264 VEVKNSSNITYALADDSPVAPLLVYETARMMSNTEVLEKRFNISW-KFEVDPNFDYLVRL 322
Query: 93 LTDQNLPHEENDFFERLRLYFPTV---YDVKYLMKLCKNLKGGLQEVADQLELR------ 143
+ L ++N R+ + T +D+ + KN KG Q+ D + +
Sbjct: 323 HFCELLVDKQNQRIFRIYINNQTAAGNFDI-FAHAGGKN-KGIYQDYLDPVSSKNDVLWI 380
Query: 144 RVGPQHQAGS--DSLLTGMAFFKIKE 167
++GP G+ D+LL+G+ FK+ +
Sbjct: 381 QLGPDSSVGASGDALLSGLEIFKLSK 406
>At5g08310.1 68418.m00978 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 1280
Score = 27.9 bits (59), Expect = 5.1
Identities = 22/82 (26%), Positives = 41/82 (50%), Gaps = 5/82 (6%)
Query: 70 VLMDNINWLSFHSGYDFGYLLKLLTDQNLPHEENDFFERLR---LYFPTVYDVKYLMK-L 125
+++D +N F S FG+ ++ L + L E + F+R+R L P Y L++ +
Sbjct: 128 LVVDVLNSRCFMSPGAFGFFIRCLGNAGLVDEASSVFDRVREMGLCVPNAYTYNCLLEAI 187
Query: 126 CKNLKGGLQEVADQL-ELRRVG 146
K+ ++ V +L E+R G
Sbjct: 188 SKSNSSSVELVEARLKEMRDCG 209
>At3g14270.1 68416.m01806 phosphatidylinositol-4-phosphate 5-kinase
family protein similar to SP|Q9Z1T6 FYVE
finger-containing phosphoinositide kinase (EC 2.7.1.68)
(1- phosphatidylinositol-4-phosphate kinase) (PIP5K)
(PtdIns(4)P-5-kinase) {Mus musculus}; contains Pfam
profiles PF01504: Phosphatidylinositol-4-phosphate
5-Kinase, PF01363: FYVE zinc finger, PF00118: TCP-1/cpn60
chaperonin family
Length = 1791
Score = 27.9 bits (59), Expect = 5.1
Identities = 18/59 (30%), Positives = 29/59 (49%), Gaps = 4/59 (6%)
Query: 147 PQHQAGSDSLLTGMAFFKIKEIFFDGNIESTSGHLYGLGAPFTTNANNFQDNVDSGNSS 205
P+ AG++SLLTG + DG+ +G L + TN++ +Q+ D G S
Sbjct: 1172 PEMNAGTNSLLTGSEV----NLNPDGDSTGDTGSLNNVQKEADTNSDLYQEKDDGGEVS 1226
>At1g77130.1 68414.m08985 glycogenin glucosyltransferase
(glycogenin)-related contains similarity to glycogenin-1
from Mus musculus [SP|Q9R062], Rattus norvegicus
[SP|O08730], Homo sapiens [SP|P46976]
Length = 618
Score = 27.1 bits (57), Expect = 9.0
Identities = 12/25 (48%), Positives = 18/25 (72%)
Query: 70 VLMDNINWLSFHSGYDFGYLLKLLT 94
+LMDNIN + ++G D GYL ++ T
Sbjct: 423 LLMDNINEVVSYNGGDQGYLNEIFT 447
Database: arabidopsis
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.320 0.139 0.409
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,976,033
Number of Sequences: 28952
Number of extensions: 206370
Number of successful extensions: 451
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 411
Number of HSP's gapped (non-prelim): 32
length of query: 205
length of database: 12,070,560
effective HSP length: 78
effective length of query: 127
effective length of database: 9,812,304
effective search space: 1246162608
effective search space used: 1246162608
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 57 (27.1 bits)
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