Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001216-TA|BGIBMGA001216-PA|undefined
(67 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_01_0664 + 4979892-4979931,4980040-4980236,4982340-4982723,498... 29 0.61
01_06_0416 - 29195666-29196946 27 2.5
02_05_0683 + 30877731-30878243 26 3.3
02_03_0280 - 17256524-17256733,17256838-17256958,17257318-172574... 26 3.3
10_08_0905 - 21469688-21469933,21470175-21470499,21470586-214708... 26 4.3
07_01_0798 - 6271261-6271725 25 5.7
05_03_0653 + 16617121-16617359,16618892-16618955,16619455-166194... 25 5.7
01_01_0623 + 4672581-4673413,4674274-4674389,4674694-4674902,467... 25 5.7
09_06_0239 - 21794691-21795986 25 7.6
08_01_0423 + 3740344-3740408,3740949-3741015,3742110-3742218,374... 25 7.6
04_04_0432 + 25157722-25157950,25158045-25158659,25159298-251593... 25 7.6
08_02_0460 - 17427050-17427694 25 10.0
04_03_0817 + 20003128-20003189,20003270-20003693,20003788-20004345 25 10.0
01_01_1134 + 8994315-8995892 25 10.0
>07_01_0664 +
4979892-4979931,4980040-4980236,4982340-4982723,
4983499-4983549,4983659-4983741,4983818-4983917,
4984410-4984488,4984957-4985080,4985605-4985711,
4985810-4985938,4987004-4987089,4987200-4987367,
4987477-4987637,4987721-4987752,4987866-4988047,
4988386-4988465,4988885-4988950,4989060-4989349,
4990433-4990540,4991521-4991618,4991680-4991782,
4992269-4992345,4992449-4992520,4992579-4992670,
4992909-4992989,4993290-4993392,4994334-4994492,
4994696-4995085
Length = 1213
Score = 28.7 bits (61), Expect = 0.61
Identities = 16/40 (40%), Positives = 22/40 (55%), Gaps = 4/40 (10%)
Query: 22 ADSIFQDAQHETGENSGVGPLP----ADINMGKVNRRKVS 57
+DS+F+ Q E N G+ PL D+N+ KVN K S
Sbjct: 558 SDSVFRRYQQEMRRNQGLWPLYRGFFVDVNLFKVNNMKSS 597
>01_06_0416 - 29195666-29196946
Length = 426
Score = 26.6 bits (56), Expect = 2.5
Identities = 12/34 (35%), Positives = 20/34 (58%), Gaps = 2/34 (5%)
Query: 13 CVIAAGAGGADSIFQDAQHETGENSGVGPLPADI 46
C +A G G S+ + HE+G + GP+PA++
Sbjct: 184 CQLALGEGEDASVVE--VHESGSWTACGPMPAEL 215
>02_05_0683 + 30877731-30878243
Length = 170
Score = 26.2 bits (55), Expect = 3.3
Identities = 11/32 (34%), Positives = 15/32 (46%)
Query: 4 VPLVDMFKGCVIAAGAGGADSIFQDAQHETGE 35
+P +D GCV+ G G + Q QH E
Sbjct: 49 IPWLDPAGGCVVGGGRGRGAAARQGRQHRRNE 80
>02_03_0280 -
17256524-17256733,17256838-17256958,17257318-17257445,
17257603-17257671,17257757-17257882,17257970-17258235,
17258341-17258535,17258614-17258694,17258729-17258851,
17258941-17259201,17260044-17260130,17260260-17260578
Length = 661
Score = 26.2 bits (55), Expect = 3.3
Identities = 10/33 (30%), Positives = 17/33 (51%)
Query: 18 GAGGADSIFQDAQHETGENSGVGPLPADINMGK 50
G GG + ++ GE G GP A++ +G+
Sbjct: 44 GGGGMEDLYGGGGGAGGEEGGEGPYAAEMEVGE 76
>10_08_0905 -
21469688-21469933,21470175-21470499,21470586-21470833,
21471061-21471315
Length = 357
Score = 25.8 bits (54), Expect = 4.3
Identities = 11/27 (40%), Positives = 14/27 (51%)
Query: 31 HETGENSGVGPLPADINMGKVNRRKVS 57
H EN + PLP + GKV R +S
Sbjct: 305 HYPSENMVISPLPEFVKDGKVKYRSIS 331
>07_01_0798 - 6271261-6271725
Length = 154
Score = 25.4 bits (53), Expect = 5.7
Identities = 15/42 (35%), Positives = 21/42 (50%)
Query: 4 VPLVDMFKGCVIAAGAGGADSIFQDAQHETGENSGVGPLPAD 45
V L+ + G V+AA AGG + A+ G G G +P D
Sbjct: 18 VALMVVVVGAVVAAAAGGEEYYGGVARAADGCEPGQGVVPKD 59
>05_03_0653 +
16617121-16617359,16618892-16618955,16619455-16619485,
16619577-16619848,16620528-16620633,16620715-16620872,
16621527-16621714,16621786-16621855,16622814-16622984,
16624363-16624838,16625625-16625871,16626158-16626490,
16627329-16627412,16627751-16627843,16627966-16628025,
16628582-16628680,16628830-16628970,16629207-16629287,
16629895-16629966,16631160-16631231,16632083-16632176,
16632257-16632339,16632455-16632532,16632914-16632970,
16633055-16633132,16633236-16633357,16633463-16633623,
16634419-16634495,16634570-16634683,16634857-16634958,
16635368-16635436,16635437-16635577,16635936-16636109,
16636934-16637063,16637137-16637276,16637369-16637446,
16637813-16637911,16638408-16638803
Length = 1749
Score = 25.4 bits (53), Expect = 5.7
Identities = 13/30 (43%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
Query: 30 QHETGENSGVGPLPADINMGKVNRRKVSTG 59
Q E +N+ V P+P DI+M K RK+ G
Sbjct: 253 QEEINDNA-VPPIPCDISMHKFAFRKIWQG 281
>01_01_0623 +
4672581-4673413,4674274-4674389,4674694-4674902,
4675953-4676072,4676185-4676313,4676394-4676442,
4676899-4676970,4677574-4677707,4677798-4677915,
4678332-4678541,4678630-4678942,4679539-4679632,
4679854-4679962,4680243-4680514,4680597-4680724,
4680832-4681066,4681570-4681758,4681845-4682128,
4682218-4682398,4682486-4682728,4682904-4682986,
4683119-4683227,4687996-4688091,4688675-4688764,
4688881-4689129,4689233-4689412,4690179-4690250,
4691385-4691474,4691605-4691705,4691794-4691959
Length = 1757
Score = 25.4 bits (53), Expect = 5.7
Identities = 13/42 (30%), Positives = 19/42 (45%), Gaps = 1/42 (2%)
Query: 18 GAGGADSIFQDAQHETGENSGVGPLPADINMGKVN-RRKVST 58
G G D + ++ E G G LP ++ G N K+ST
Sbjct: 616 GGRGGDGFYNESHAEGGSMYGSADLPCELGSGSGNDTTKLST 657
>09_06_0239 - 21794691-21795986
Length = 431
Score = 25.0 bits (52), Expect = 7.6
Identities = 10/35 (28%), Positives = 17/35 (48%)
Query: 7 VDMFKGCVIAAGAGGADSIFQDAQHETGENSGVGP 41
+D F C ++GA G+ ++F E N+ P
Sbjct: 212 IDRFSYCFSSSGAPGSSAVFLGGSPELATNATTTP 246
>08_01_0423 +
3740344-3740408,3740949-3741015,3742110-3742218,
3742320-3742447,3742899-3743324
Length = 264
Score = 25.0 bits (52), Expect = 7.6
Identities = 11/29 (37%), Positives = 15/29 (51%)
Query: 27 QDAQHETGENSGVGPLPADINMGKVNRRK 55
+D E G+ G G PAD ++ RRK
Sbjct: 234 EDEDEEEGQEDGEGHAPADDDVPCAKRRK 262
>04_04_0432 +
25157722-25157950,25158045-25158659,25159298-25159380,
25159906-25159979,25160101-25160151,25160295-25160371,
25160856-25161595
Length = 622
Score = 25.0 bits (52), Expect = 7.6
Identities = 20/61 (32%), Positives = 27/61 (44%), Gaps = 4/61 (6%)
Query: 7 VDMFKGCVIAAGAGGADSIFQDAQHETGENSGVGPLPADINMGKVNRRKVSTGVQLSFAY 66
+ M G V AAG GGA A+ + EN V P G V R+ + T Q + Y
Sbjct: 225 LSMSTGSVAAAGGGGA---VVAAESSSSENKRVDS-PGGAVDGAVPRKSIDTFGQRTSIY 280
Query: 67 K 67
+
Sbjct: 281 R 281
>08_02_0460 - 17427050-17427694
Length = 214
Score = 24.6 bits (51), Expect = 10.0
Identities = 12/20 (60%), Positives = 15/20 (75%), Gaps = 1/20 (5%)
Query: 12 GCVIAAGAGGADSIFQDAQH 31
G V+ AGAGGAD++ DA H
Sbjct: 123 GRVVQAGAGGADNM-MDAFH 141
>04_03_0817 + 20003128-20003189,20003270-20003693,20003788-20004345
Length = 347
Score = 24.6 bits (51), Expect = 10.0
Identities = 15/29 (51%), Positives = 20/29 (68%), Gaps = 6/29 (20%)
Query: 16 AAGAGGADSIFQDAQ---HET---GENSG 38
AAGAGGA+ +DAQ +ET G+N+G
Sbjct: 258 AAGAGGAEGDAEDAQSCCYETPCGGDNAG 286
>01_01_1134 + 8994315-8995892
Length = 525
Score = 24.6 bits (51), Expect = 10.0
Identities = 15/38 (39%), Positives = 18/38 (47%)
Query: 22 ADSIFQDAQHETGENSGVGPLPADINMGKVNRRKVSTG 59
A+SIF A + G G P A V RR VS+G
Sbjct: 224 ANSIFAAAPNRGGGGGGAAPFAAFPAPDIVGRRVVSSG 261
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.316 0.134 0.387
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,161,478
Number of Sequences: 37544
Number of extensions: 79256
Number of successful extensions: 163
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 155
Number of HSP's gapped (non-prelim): 14
length of query: 67
length of database: 14,793,348
effective HSP length: 47
effective length of query: 20
effective length of database: 13,028,780
effective search space: 260575600
effective search space used: 260575600
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 51 (24.6 bits)
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