GeneModel BLAST Result against uniref50

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001216-TA|BGIBMGA001216-PA|undefined
         (67 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q1GLF3 Cluster: Tyrosine recombinase xerC; n=2; Silicib...    33   1.4  
UniRef50_A0LI84 Cluster: Fumarate reductase/succinate dehydrogen...    30   7.7  

>UniRef50_Q1GLF3 Cluster: Tyrosine recombinase xerC; n=2;
           Silicibacter sp. TM1040|Rep: Tyrosine recombinase xerC -
           Silicibacter sp. (strain TM1040)
          Length = 372

 Score = 32.7 bits (71), Expect = 1.4
 Identities = 18/50 (36%), Positives = 28/50 (56%), Gaps = 2/50 (4%)

Query: 18  GAGGADSIFQDAQHETGENSGVGPLPADINMGKVNR--RKVSTGVQLSFA 65
           G GG D++F D+++ +   +   PLP     G VN+  R  STGV  S++
Sbjct: 218 GFGGEDALFPDSKYLSTPKTSPAPLPILETSGAVNKAFRIASTGVGQSYS 267


>UniRef50_A0LI84 Cluster: Fumarate reductase/succinate
          dehydrogenase flavoprotein domain protein precursor;
          n=1; Syntrophobacter fumaroxidans MPOB|Rep: Fumarate
          reductase/succinate dehydrogenase flavoprotein domain
          protein precursor - Syntrophobacter fumaroxidans
          (strain DSM 10017 / MPOB)
          Length = 493

 Score = 30.3 bits (65), Expect = 7.7
 Identities = 11/18 (61%), Positives = 14/18 (77%)

Query: 8  DMFKGCVIAAGAGGADSI 25
          DM KGC++AA AG  DS+
Sbjct: 9  DMIKGCLVAAAAGAMDSV 26


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.316    0.134    0.387 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 75,483,648
Number of Sequences: 1657284
Number of extensions: 2573139
Number of successful extensions: 5084
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 5083
Number of HSP's gapped (non-prelim): 2
length of query: 67
length of database: 575,637,011
effective HSP length: 47
effective length of query: 20
effective length of database: 497,744,663
effective search space: 9954893260
effective search space used: 9954893260
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 65 (30.3 bits)