GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001216-TA|BGIBMGA001216-PA|undefined
         (67 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC244.01c |sid4||SIN component scaffold protein Sid4 |Schizosa...    23   3.8  
SPBP8B7.18c |||phosphomethylpyrimidine kinase|Schizosaccharomyce...    22   8.7  
SPAP7G5.04c |lys1||aminoadipate-semialdehyde dehydrogenase |Schi...    22   8.7  

>SPBC244.01c |sid4||SIN component scaffold protein Sid4
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 660

 Score = 23.4 bits (48), Expect = 3.8
 Identities = 7/17 (41%), Positives = 14/17 (82%)

Query: 21  GADSIFQDAQHETGENS 37
           G++++F D +H+ G+NS
Sbjct: 99  GSNNLFLDPRHQLGDNS 115


>SPBP8B7.18c |||phosphomethylpyrimidine kinase|Schizosaccharomyces
          pombe|chr 2|||Manual
          Length = 551

 Score = 22.2 bits (45), Expect = 8.7
 Identities = 7/13 (53%), Positives = 10/13 (76%)

Query: 13 CVIAAGAGGADSI 25
          C++A  AGG DS+
Sbjct: 72 CLVAENAGGVDSV 84


>SPAP7G5.04c |lys1||aminoadipate-semialdehyde dehydrogenase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1419

 Score = 22.2 bits (45), Expect = 8.7
 Identities = 13/38 (34%), Positives = 18/38 (47%), Gaps = 2/38 (5%)

Query: 4   VPLVDMFKGCVIAAGA--GGADSIFQDAQHETGENSGV 39
           VP + + K   +  G+   GAD I Q   H   E +GV
Sbjct: 415 VPALKLAKDGSLTGGSVSKGADDILQHVLHLKSEQTGV 452


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.316    0.134    0.387 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 282,038
Number of Sequences: 5004
Number of extensions: 8838
Number of successful extensions: 9
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 7
Number of HSP's gapped (non-prelim): 3
length of query: 67
length of database: 2,362,478
effective HSP length: 47
effective length of query: 20
effective length of database: 2,127,290
effective search space: 42545800
effective search space used: 42545800
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 45 (22.2 bits)