Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001216-TA|BGIBMGA001216-PA|undefined
(67 letters)
Database: human
224,733 sequences; 73,234,838 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY861435-1|AAX56125.1| 1065|Homo sapiens protocadherin 11X isofo... 28 5.4
AY861434-1|AAX56124.1| 1329|Homo sapiens protocadherin 11X isofo... 28 5.4
AY861433-1|AAX56123.1| 1310|Homo sapiens protocadherin 11X isofo... 28 5.4
AY861432-1|AAX56122.1| 1339|Homo sapiens protocadherin 11X isofo... 28 5.4
AL133321-2|CAI41436.1| 1337|Homo sapiens protocadherin 11 X-link... 28 5.4
AL133321-1|CAI41435.1| 1347|Homo sapiens protocadherin 11 X-link... 28 5.4
AL133274-3|CAI41629.1| 1310|Homo sapiens protocadherin 11 X-link... 28 5.4
AL133274-2|CAI41631.1| 1337|Homo sapiens protocadherin 11 X-link... 28 5.4
AL133274-1|CAI41630.1| 1347|Homo sapiens protocadherin 11 X-link... 28 5.4
AL121869-5|CAI41414.1| 1337|Homo sapiens protocadherin 11 X-link... 28 5.4
AL121869-4|CAI41413.1| 1347|Homo sapiens protocadherin 11 X-link... 28 5.4
AL121869-3|CAI41412.1| 1310|Homo sapiens protocadherin 11 X-link... 28 5.4
AJ564932-1|CAD92411.1| 180|Homo sapiens protocadherin protein. 28 5.4
AJ564931-1|CAD92410.1| 180|Homo sapiens protocadherin protein. 28 5.4
AJ276804-1|CAC13123.1| 1025|Homo sapiens protocadherin protein. 28 5.4
AF332219-1|AAK13471.1| 1337|Homo sapiens protocadherin 11 protein. 28 5.4
AF332218-1|AAK13470.1| 1347|Homo sapiens protocadherin 11 protein. 28 5.4
AF217288-1|AAK82656.1| 1310|Homo sapiens protocadherin-S protein. 28 5.4
AF206516-1|AAK82655.1| 1347|Homo sapiens protocadherin-S protein. 28 5.4
AB026187-1|BAA90765.1| 1021|Homo sapiens protocadherin-Xa protein. 28 5.4
>AY861435-1|AAX56125.1| 1065|Homo sapiens protocadherin 11X
isoform 5 protein.
Length = 1065
Score = 27.9 bits (59), Expect = 5.4
Identities = 13/47 (27%), Positives = 22/47 (46%)
Query: 21 GADSIFQDAQHETGENSGVGPLPADINMGKVNRRKVSTGVQLSFAYK 67
GA + E EN +G L D+N+ + + ++T +Q YK
Sbjct: 22 GAQEKNYTIREEMPENVLIGDLLKDLNLSLIPNKSLTTAMQFKLVYK 68
>AY861434-1|AAX56124.1| 1329|Homo sapiens protocadherin 11X
isoform 6 protein.
Length = 1329
Score = 27.9 bits (59), Expect = 5.4
Identities = 13/47 (27%), Positives = 22/47 (46%)
Query: 21 GADSIFQDAQHETGENSGVGPLPADINMGKVNRRKVSTGVQLSFAYK 67
GA + E EN +G L D+N+ + + ++T +Q YK
Sbjct: 22 GAQEKNYTIREEMPENVLIGDLLKDLNLSLIPNKSLTTAMQFKLVYK 68
>AY861433-1|AAX56123.1| 1310|Homo sapiens protocadherin 11X
isoform 7 protein.
Length = 1310
Score = 27.9 bits (59), Expect = 5.4
Identities = 13/47 (27%), Positives = 22/47 (46%)
Query: 21 GADSIFQDAQHETGENSGVGPLPADINMGKVNRRKVSTGVQLSFAYK 67
GA + E EN +G L D+N+ + + ++T +Q YK
Sbjct: 22 GAQEKNYTIREEMPENVLIGDLLKDLNLSLIPNKSLTTAMQFKLVYK 68
>AY861432-1|AAX56122.1| 1339|Homo sapiens protocadherin 11X
isoform 8 protein.
Length = 1339
Score = 27.9 bits (59), Expect = 5.4
Identities = 13/47 (27%), Positives = 22/47 (46%)
Query: 21 GADSIFQDAQHETGENSGVGPLPADINMGKVNRRKVSTGVQLSFAYK 67
GA + E EN +G L D+N+ + + ++T +Q YK
Sbjct: 22 GAQEKNYTIREEMPENVLIGDLLKDLNLSLIPNKSLTTAMQFKLVYK 68
>AL133321-2|CAI41436.1| 1337|Homo sapiens protocadherin 11
X-linked protein.
Length = 1337
Score = 27.9 bits (59), Expect = 5.4
Identities = 13/47 (27%), Positives = 22/47 (46%)
Query: 21 GADSIFQDAQHETGENSGVGPLPADINMGKVNRRKVSTGVQLSFAYK 67
GA + E EN +G L D+N+ + + ++T +Q YK
Sbjct: 22 GAQEKNYTIREEMPENVLIGDLLKDLNLSLIPNKSLTTAMQFKLVYK 68
>AL133321-1|CAI41435.1| 1347|Homo sapiens protocadherin 11
X-linked protein.
Length = 1347
Score = 27.9 bits (59), Expect = 5.4
Identities = 13/47 (27%), Positives = 22/47 (46%)
Query: 21 GADSIFQDAQHETGENSGVGPLPADINMGKVNRRKVSTGVQLSFAYK 67
GA + E EN +G L D+N+ + + ++T +Q YK
Sbjct: 22 GAQEKNYTIREEMPENVLIGDLLKDLNLSLIPNKSLTTAMQFKLVYK 68
>AL133274-3|CAI41629.1| 1310|Homo sapiens protocadherin 11
X-linked protein.
Length = 1310
Score = 27.9 bits (59), Expect = 5.4
Identities = 13/47 (27%), Positives = 22/47 (46%)
Query: 21 GADSIFQDAQHETGENSGVGPLPADINMGKVNRRKVSTGVQLSFAYK 67
GA + E EN +G L D+N+ + + ++T +Q YK
Sbjct: 22 GAQEKNYTIREEMPENVLIGDLLKDLNLSLIPNKSLTTAMQFKLVYK 68
>AL133274-2|CAI41631.1| 1337|Homo sapiens protocadherin 11
X-linked protein.
Length = 1337
Score = 27.9 bits (59), Expect = 5.4
Identities = 13/47 (27%), Positives = 22/47 (46%)
Query: 21 GADSIFQDAQHETGENSGVGPLPADINMGKVNRRKVSTGVQLSFAYK 67
GA + E EN +G L D+N+ + + ++T +Q YK
Sbjct: 22 GAQEKNYTIREEMPENVLIGDLLKDLNLSLIPNKSLTTAMQFKLVYK 68
>AL133274-1|CAI41630.1| 1347|Homo sapiens protocadherin 11
X-linked protein.
Length = 1347
Score = 27.9 bits (59), Expect = 5.4
Identities = 13/47 (27%), Positives = 22/47 (46%)
Query: 21 GADSIFQDAQHETGENSGVGPLPADINMGKVNRRKVSTGVQLSFAYK 67
GA + E EN +G L D+N+ + + ++T +Q YK
Sbjct: 22 GAQEKNYTIREEMPENVLIGDLLKDLNLSLIPNKSLTTAMQFKLVYK 68
>AL121869-5|CAI41414.1| 1337|Homo sapiens protocadherin 11
X-linked protein.
Length = 1337
Score = 27.9 bits (59), Expect = 5.4
Identities = 13/47 (27%), Positives = 22/47 (46%)
Query: 21 GADSIFQDAQHETGENSGVGPLPADINMGKVNRRKVSTGVQLSFAYK 67
GA + E EN +G L D+N+ + + ++T +Q YK
Sbjct: 22 GAQEKNYTIREEMPENVLIGDLLKDLNLSLIPNKSLTTAMQFKLVYK 68
>AL121869-4|CAI41413.1| 1347|Homo sapiens protocadherin 11
X-linked protein.
Length = 1347
Score = 27.9 bits (59), Expect = 5.4
Identities = 13/47 (27%), Positives = 22/47 (46%)
Query: 21 GADSIFQDAQHETGENSGVGPLPADINMGKVNRRKVSTGVQLSFAYK 67
GA + E EN +G L D+N+ + + ++T +Q YK
Sbjct: 22 GAQEKNYTIREEMPENVLIGDLLKDLNLSLIPNKSLTTAMQFKLVYK 68
>AL121869-3|CAI41412.1| 1310|Homo sapiens protocadherin 11
X-linked protein.
Length = 1310
Score = 27.9 bits (59), Expect = 5.4
Identities = 13/47 (27%), Positives = 22/47 (46%)
Query: 21 GADSIFQDAQHETGENSGVGPLPADINMGKVNRRKVSTGVQLSFAYK 67
GA + E EN +G L D+N+ + + ++T +Q YK
Sbjct: 22 GAQEKNYTIREEMPENVLIGDLLKDLNLSLIPNKSLTTAMQFKLVYK 68
>AJ564932-1|CAD92411.1| 180|Homo sapiens protocadherin protein.
Length = 180
Score = 27.9 bits (59), Expect = 5.4
Identities = 13/47 (27%), Positives = 22/47 (46%)
Query: 21 GADSIFQDAQHETGENSGVGPLPADINMGKVNRRKVSTGVQLSFAYK 67
GA + E EN +G L D+N+ + + ++T +Q YK
Sbjct: 22 GAQEKNYTIREEMPENVLIGDLLKDLNLSLIPNKSLTTAMQFKLVYK 68
>AJ564931-1|CAD92410.1| 180|Homo sapiens protocadherin protein.
Length = 180
Score = 27.9 bits (59), Expect = 5.4
Identities = 13/47 (27%), Positives = 22/47 (46%)
Query: 21 GADSIFQDAQHETGENSGVGPLPADINMGKVNRRKVSTGVQLSFAYK 67
GA + E EN +G L D+N+ + + ++T +Q YK
Sbjct: 22 GAQEKNYTIREEMPENVLIGDLLKDLNLSLIPNKSLTTAMQFKLVYK 68
>AJ276804-1|CAC13123.1| 1025|Homo sapiens protocadherin protein.
Length = 1025
Score = 27.9 bits (59), Expect = 5.4
Identities = 13/47 (27%), Positives = 22/47 (46%)
Query: 21 GADSIFQDAQHETGENSGVGPLPADINMGKVNRRKVSTGVQLSFAYK 67
GA + E EN +G L D+N+ + + ++T +Q YK
Sbjct: 22 GAQEKNYTIREEMPENVLIGDLLKDLNLSLIPNKSLTTAMQFKLVYK 68
>AF332219-1|AAK13471.1| 1337|Homo sapiens protocadherin 11
protein.
Length = 1337
Score = 27.9 bits (59), Expect = 5.4
Identities = 13/47 (27%), Positives = 22/47 (46%)
Query: 21 GADSIFQDAQHETGENSGVGPLPADINMGKVNRRKVSTGVQLSFAYK 67
GA + E EN +G L D+N+ + + ++T +Q YK
Sbjct: 22 GAQEKNYTIREEMPENVLIGDLLKDLNLSLIPNKSLTTAMQFKLVYK 68
>AF332218-1|AAK13470.1| 1347|Homo sapiens protocadherin 11
protein.
Length = 1347
Score = 27.9 bits (59), Expect = 5.4
Identities = 13/47 (27%), Positives = 22/47 (46%)
Query: 21 GADSIFQDAQHETGENSGVGPLPADINMGKVNRRKVSTGVQLSFAYK 67
GA + E EN +G L D+N+ + + ++T +Q YK
Sbjct: 22 GAQEKNYTIREEMPENVLIGDLLKDLNLSLIPNKSLTTAMQFKLVYK 68
>AF217288-1|AAK82656.1| 1310|Homo sapiens protocadherin-S protein.
Length = 1310
Score = 27.9 bits (59), Expect = 5.4
Identities = 13/47 (27%), Positives = 22/47 (46%)
Query: 21 GADSIFQDAQHETGENSGVGPLPADINMGKVNRRKVSTGVQLSFAYK 67
GA + E EN +G L D+N+ + + ++T +Q YK
Sbjct: 22 GAQEKNYTIREEMPENVLIGDLLKDLNLSLIPNKSLTTAMQFKLVYK 68
>AF206516-1|AAK82655.1| 1347|Homo sapiens protocadherin-S protein.
Length = 1347
Score = 27.9 bits (59), Expect = 5.4
Identities = 13/47 (27%), Positives = 22/47 (46%)
Query: 21 GADSIFQDAQHETGENSGVGPLPADINMGKVNRRKVSTGVQLSFAYK 67
GA + E EN +G L D+N+ + + ++T +Q YK
Sbjct: 22 GAQEKNYTIREEMPENVLIGDLLKDLNLSLIPNKSLTTAMQFKLVYK 68
>AB026187-1|BAA90765.1| 1021|Homo sapiens protocadherin-Xa
protein.
Length = 1021
Score = 27.9 bits (59), Expect = 5.4
Identities = 13/47 (27%), Positives = 22/47 (46%)
Query: 21 GADSIFQDAQHETGENSGVGPLPADINMGKVNRRKVSTGVQLSFAYK 67
GA + E EN +G L D+N+ + + ++T +Q YK
Sbjct: 22 GAQEKNYTIREEMPENVLIGDLLKDLNLSLIPNKSLTTAMQFKLVYK 68
Database: human
Posted date: Oct 5, 2007 11:13 AM
Number of letters in database: 73,234,838
Number of sequences in database: 224,733
Lambda K H
0.316 0.134 0.387
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,359,176
Number of Sequences: 224733
Number of extensions: 316202
Number of successful extensions: 587
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 567
Number of HSP's gapped (non-prelim): 20
length of query: 67
length of database: 73,234,838
effective HSP length: 46
effective length of query: 21
effective length of database: 62,897,120
effective search space: 1320839520
effective search space used: 1320839520
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 57 (27.1 bits)
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