GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001216-TA|BGIBMGA001216-PA|undefined
         (67 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U61947-8|AAB03133.1|   64|Caenorhabditis elegans Hypothetical pr...    26   3.7  
Z83117-4|CAB05572.2| 2032|Caenorhabditis elegans Hypothetical pr...    25   5.0  
Z80219-5|CAB02303.2| 2032|Caenorhabditis elegans Hypothetical pr...    25   5.0  
AJ276020-1|CAC81668.1| 1971|Caenorhabditis elegans putative TRP ...    25   5.0  
DQ340626-1|ABC65814.1|  782|Caenorhabditis elegans chondroitin p...    25   6.5  
AF022968-8|AAB69883.3|  782|Caenorhabditis elegans Chondroitin p...    25   6.5  

>U61947-8|AAB03133.1|   64|Caenorhabditis elegans Hypothetical
          protein C06G3.3 protein.
          Length = 64

 Score = 25.8 bits (54), Expect = 3.7
 Identities = 10/22 (45%), Positives = 14/22 (63%)

Query: 29 AQHETGENSGVGPLPADINMGK 50
          +QHE+  NS V P P ++  GK
Sbjct: 21 SQHESPSNSPVSPSPQEVPRGK 42


>Z83117-4|CAB05572.2| 2032|Caenorhabditis elegans Hypothetical protein
            T01H8.5 protein.
          Length = 2032

 Score = 25.4 bits (53), Expect = 5.0
 Identities = 13/38 (34%), Positives = 21/38 (55%), Gaps = 6/38 (15%)

Query: 21   GADSIFQDAQHETGENSGVGPLPADINMGKVNRRKVST 58
            G D I ++  H++GENS    LP     G++ R + +T
Sbjct: 1753 GTDPILEEKDHDSGENS--NSLPP----GRIRRNRTAT 1784


>Z80219-5|CAB02303.2| 2032|Caenorhabditis elegans Hypothetical protein
            T01H8.5 protein.
          Length = 2032

 Score = 25.4 bits (53), Expect = 5.0
 Identities = 13/38 (34%), Positives = 21/38 (55%), Gaps = 6/38 (15%)

Query: 21   GADSIFQDAQHETGENSGVGPLPADINMGKVNRRKVST 58
            G D I ++  H++GENS    LP     G++ R + +T
Sbjct: 1753 GTDPILEEKDHDSGENS--NSLPP----GRIRRNRTAT 1784


>AJ276020-1|CAC81668.1| 1971|Caenorhabditis elegans putative TRP
            homologous cationchannel protein.
          Length = 1971

 Score = 25.4 bits (53), Expect = 5.0
 Identities = 13/38 (34%), Positives = 21/38 (55%), Gaps = 6/38 (15%)

Query: 21   GADSIFQDAQHETGENSGVGPLPADINMGKVNRRKVST 58
            G D I ++  H++GENS    LP     G++ R + +T
Sbjct: 1692 GTDPILEEKDHDSGENS--NSLPP----GRIRRNRTAT 1723


>DQ340626-1|ABC65814.1|  782|Caenorhabditis elegans chondroitin
           proteoglycan-4 protein.
          Length = 782

 Score = 25.0 bits (52), Expect = 6.5
 Identities = 13/41 (31%), Positives = 22/41 (53%)

Query: 16  AAGAGGADSIFQDAQHETGENSGVGPLPADINMGKVNRRKV 56
           A+G+ G +S   ++   +GE SGVG      + G  N +K+
Sbjct: 687 ASGSSGDNSGDFNSSGSSGEASGVGESSGSEDQGSGNYKKI 727


>AF022968-8|AAB69883.3|  782|Caenorhabditis elegans Chondroitin
           proteoglycan protein 4 protein.
          Length = 782

 Score = 25.0 bits (52), Expect = 6.5
 Identities = 13/41 (31%), Positives = 22/41 (53%)

Query: 16  AAGAGGADSIFQDAQHETGENSGVGPLPADINMGKVNRRKV 56
           A+G+ G +S   ++   +GE SGVG      + G  N +K+
Sbjct: 687 ASGSSGDNSGDFNSSGSSGEASGVGESSGSEDQGSGNYKKI 727


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.316    0.134    0.387 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,563,736
Number of Sequences: 27539
Number of extensions: 51202
Number of successful extensions: 77
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 69
Number of HSP's gapped (non-prelim): 8
length of query: 67
length of database: 12,573,161
effective HSP length: 47
effective length of query: 20
effective length of database: 11,278,828
effective search space: 225576560
effective search space used: 225576560
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 51 (24.6 bits)