GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001216-TA|BGIBMGA001216-PA|undefined
         (67 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             23   0.24 
Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1 p...    22   0.72 
AY217747-1|AAP45005.1|  246|Apis mellifera short-chain dehydroge...    20   2.9  

>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 23.4 bits (48), Expect = 0.24
 Identities = 11/28 (39%), Positives = 14/28 (50%)

Query: 27   QDAQHETGENSGVGPLPADINMGKVNRR 54
            Q  QH+  E  GVG   A+ + G  N R
Sbjct: 1230 QQQQHQAREREGVGAGIAETSAGTSNSR 1257


>Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1
          protein.
          Length = 402

 Score = 21.8 bits (44), Expect = 0.72
 Identities = 7/23 (30%), Positives = 15/23 (65%)

Query: 1  MSNVPLVDMFKGCVIAAGAGGAD 23
          ++++ + D+F GC++   AG  D
Sbjct: 64 LASLAIADLFVGCLVMTFAGVND 86


>AY217747-1|AAP45005.1|  246|Apis mellifera short-chain
          dehydrogenase/reductase protein.
          Length = 246

 Score = 19.8 bits (39), Expect = 2.9
 Identities = 8/18 (44%), Positives = 11/18 (61%)

Query: 33 TGENSGVGPLPADINMGK 50
          TG NSG+G    +  +GK
Sbjct: 13 TGANSGIGKCLIECLVGK 30


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.316    0.134    0.387 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,662
Number of Sequences: 429
Number of extensions: 603
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of query: 67
length of database: 140,377
effective HSP length: 45
effective length of query: 22
effective length of database: 121,072
effective search space:  2663584
effective search space used:  2663584
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 35 (18.9 bits)
S2: 35 (18.2 bits)