GeneModel BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001216-TA|BGIBMGA001216-PA|undefined
         (67 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g09840.1 68418.m01138 expressed protein contains Pfam profile...    27   2.0  
At4g39270.2 68417.m05561 leucine-rich repeat transmembrane prote...    26   2.7  
At4g39270.1 68417.m05562 leucine-rich repeat transmembrane prote...    26   2.7  
At2g43270.1 68415.m05378 F-box family protein contains Pfam PF00...    25   4.7  
At3g45830.1 68416.m04960 expressed protein                             25   8.2  

>At5g09840.1 68418.m01138 expressed protein contains Pfam profile
           PF04396: Protein of unknown function, DUF537
          Length = 924

 Score = 26.6 bits (56), Expect = 2.0
 Identities = 14/43 (32%), Positives = 24/43 (55%), Gaps = 5/43 (11%)

Query: 19  AGGADSIFQDA-----QHETGENSGVGPLPADINMGKVNRRKV 56
           + G  SIF D+     Q + GE SG     A +++G V+R+++
Sbjct: 690 SNGLSSIFSDSSKSQWQKQNGEKSGKNVAHAGVSVGSVDRKEL 732


>At4g39270.2 68417.m05561 leucine-rich repeat transmembrane protein
           kinase, putative receptor protein kinase erecta,
           Arabidopsis thaliana
          Length = 694

 Score = 26.2 bits (55), Expect = 2.7
 Identities = 13/40 (32%), Positives = 21/40 (52%), Gaps = 1/40 (2%)

Query: 29  AQHETGENSGVGPLPADINMGKVNRRKVSTG-VQLSFAYK 67
           + H  G ++GVGPLP D  +       ++ G +  SF Y+
Sbjct: 453 SNHPRGRHNGVGPLPPDETLPSRGGVSINFGSLGSSFTYQ 492


>At4g39270.1 68417.m05562 leucine-rich repeat transmembrane protein
           kinase, putative receptor protein kinase erecta,
           Arabidopsis thaliana
          Length = 864

 Score = 26.2 bits (55), Expect = 2.7
 Identities = 13/40 (32%), Positives = 21/40 (52%), Gaps = 1/40 (2%)

Query: 29  AQHETGENSGVGPLPADINMGKVNRRKVSTG-VQLSFAYK 67
           + H  G ++GVGPLP D  +       ++ G +  SF Y+
Sbjct: 453 SNHPRGRHNGVGPLPPDETLPSRGGVSINFGSLGSSFTYQ 492


>At2g43270.1 68415.m05378 F-box family protein contains Pfam
           PF00646: F-box domain; contains TIGRFAM TIGR01640 :
           F-box protein interaction domain
          Length = 387

 Score = 25.4 bits (53), Expect = 4.7
 Identities = 11/22 (50%), Positives = 16/22 (72%)

Query: 32  ETGENSGVGPLPADINMGKVNR 53
           ETGE S + P P DI++G+ +R
Sbjct: 175 ETGEWSELNPPPNDIDVGRKSR 196


>At3g45830.1 68416.m04960 expressed protein
          Length = 1298

 Score = 24.6 bits (51), Expect = 8.2
 Identities = 10/21 (47%), Positives = 14/21 (66%)

Query: 27  QDAQHETGENSGVGPLPADIN 47
           ++A+HETGEN    P  A+ N
Sbjct: 850 ENAEHETGENGASVPEEAEDN 870


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.316    0.134    0.387 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,567,933
Number of Sequences: 28952
Number of extensions: 52182
Number of successful extensions: 94
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 89
Number of HSP's gapped (non-prelim): 5
length of query: 67
length of database: 12,070,560
effective HSP length: 47
effective length of query: 20
effective length of database: 10,709,816
effective search space: 214196320
effective search space used: 214196320
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 51 (24.6 bits)