Silkworm BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001214-TA|BGIBMGA001214-PA|IPR003463|Paralytic/GBP/PSP
peptide
         (107 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_53571| Best HMM Match : MORN (HMM E-Value=1.12104e-44)              28   1.8  
SB_26360| Best HMM Match : PKD_channel (HMM E-Value=1.3e-30)           27   3.2  
SB_43772| Best HMM Match : DUF243 (HMM E-Value=3)                      27   4.2  
SB_39085| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   4.2  
SB_57870| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   7.3  
SB_33454| Best HMM Match : PAN (HMM E-Value=0.0013)                    25   9.6  
SB_31479| Best HMM Match : Peptidase_M13_N (HMM E-Value=1.60028e...    25   9.6  
SB_40400| Best HMM Match : No HMM Matches (HMM E-Value=.)              25   9.6  
SB_1381| Best HMM Match : TP2 (HMM E-Value=5.2)                        25   9.6  

>SB_53571| Best HMM Match : MORN (HMM E-Value=1.12104e-44)
          Length = 221

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 15/29 (51%), Positives = 19/29 (65%), Gaps = 1/29 (3%)

Query: 19  GASAFKSKSAQATGQDVSDRLIFRDDDNE 47
           G  +FK+  AQ TGQ VS R++ RD D E
Sbjct: 174 GRFSFKTGCAQ-TGQYVSKRVVSRDTDGE 201


>SB_26360| Best HMM Match : PKD_channel (HMM E-Value=1.3e-30)
          Length = 3015

 Score = 27.1 bits (57), Expect = 3.2
 Identities = 19/70 (27%), Positives = 34/70 (48%), Gaps = 2/70 (2%)

Query: 6   FIVCCVVLLLNSTGASAFKSKSAQATGQDVSDRLIFRDDDNEQNYYNVFSDSVQRGGVEL 65
           F++    L+L+S  A+    K+ +      SD    ++  N+ +  N FS  +Q G V+ 
Sbjct: 662 FVIVIRFLILDSLSAATEVQKTVKVRTPLASDASETKNTINKAS--NAFSGLLQSGDVQG 719

Query: 66  ATQITLASTG 75
           AT++  A  G
Sbjct: 720 ATEVANAILG 729


>SB_43772| Best HMM Match : DUF243 (HMM E-Value=3)
          Length = 472

 Score = 26.6 bits (56), Expect = 4.2
 Identities = 18/72 (25%), Positives = 30/72 (41%), Gaps = 2/72 (2%)

Query: 15  LNSTGASAFKSKSA--QATGQDVSDRLIFRDDDNEQNYYNVFSDSVQRGGVELATQITLA 72
           LN T    F+      Q+ GQ    RL F  +D   N    +SDS    G   +  ++L 
Sbjct: 196 LNGTKEFLFEGNPLVLQSVGQGYGKRLSFESEDVLYNENYFWSDSNPEEGYAFSISLSLG 255

Query: 73  STGKTTTEKEGR 84
               +  +++G+
Sbjct: 256 GHKYSVLDRQGK 267


>SB_39085| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 130

 Score = 26.6 bits (56), Expect = 4.2
 Identities = 14/46 (30%), Positives = 22/46 (47%)

Query: 20  ASAFKSKSAQATGQDVSDRLIFRDDDNEQNYYNVFSDSVQRGGVEL 65
           A A K +  +    + +     RD++NE   YN+  DSV   G+ L
Sbjct: 84  AQASKQREPKKMALEFALLSCLRDEENEDEPYNLTWDSVLASGIVL 129


>SB_57870| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 155

 Score = 25.8 bits (54), Expect = 7.3
 Identities = 11/29 (37%), Positives = 17/29 (58%), Gaps = 1/29 (3%)

Query: 49 NYYNVFSDSVQRGGVELATQ-ITLASTGK 76
          N+Y    + +QR GV + TQ  T  ++GK
Sbjct: 2  NFYRYIEEHIQRTGVAIETQGFTFVTSGK 30


>SB_33454| Best HMM Match : PAN (HMM E-Value=0.0013)
          Length = 459

 Score = 25.4 bits (53), Expect = 9.6
 Identities = 15/46 (32%), Positives = 22/46 (47%), Gaps = 2/46 (4%)

Query: 61  GGVELATQITLASTGKTTTEKEGRDNFKGG--CATGFKRTADGRCR 104
           GG    T  T ++TG+T +  EG ++  GG    TG      GR +
Sbjct: 138 GGTNSTTGGTNSATGETNSATEGTNSTTGGTNSTTGGTNNKTGRTK 183


>SB_31479| Best HMM Match : Peptidase_M13_N (HMM
          E-Value=1.60028e-42)
          Length = 627

 Score = 25.4 bits (53), Expect = 9.6
 Identities = 13/36 (36%), Positives = 20/36 (55%), Gaps = 1/36 (2%)

Query: 3  CYVFIVCCVVLLLNSTGASAFKS-KSAQATGQDVSD 37
          C+V +V C+VL +    A A K+ K A+    D+ D
Sbjct: 33 CFVLLVVCIVLGVLYYQAKALKNDKPAEVVKYDICD 68


>SB_40400| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 178

 Score = 25.4 bits (53), Expect = 9.6
 Identities = 12/43 (27%), Positives = 17/43 (39%)

Query: 8   VCCVVLLLNSTGASAFKSKSAQATGQDVSDRLIFRDDDNEQNY 50
           +CC  LL    G+S  K K  +  G    DR    + +    Y
Sbjct: 64  ICCTTLLQGLRGSSTKKKKRTKKKGPLAWDRTRSEEQNGNHTY 106


>SB_1381| Best HMM Match : TP2 (HMM E-Value=5.2)
          Length = 428

 Score = 25.4 bits (53), Expect = 9.6
 Identities = 13/36 (36%), Positives = 20/36 (55%), Gaps = 1/36 (2%)

Query: 3   CYVFIVCCVVLLLNSTGASAFKS-KSAQATGQDVSD 37
           C+V +V C+VL +    A A K+ K A+    D+ D
Sbjct: 304 CFVLLVVCIVLGVLYYQAKALKNDKPAEVVKYDICD 339


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.320    0.134    0.396 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,583,581
Number of Sequences: 59808
Number of extensions: 125292
Number of successful extensions: 337
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 334
Number of HSP's gapped (non-prelim): 9
length of query: 107
length of database: 16,821,457
effective HSP length: 72
effective length of query: 35
effective length of database: 12,515,281
effective search space: 438034835
effective search space used: 438034835
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 53 (25.4 bits)