GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001212-TA|BGIBMGA001212-PA|IPR002048|Calcium-binding
EF-hand
         (153 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride c...    23   1.8  
DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    23   1.8  
AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl sub...    23   1.8  
AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex det...    20   9.7  

>DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 22.6 bits (46), Expect = 1.8
 Identities = 9/12 (75%), Positives = 9/12 (75%)

Query: 14  KTATTNPGPGGV 25
           KTA  NPGP GV
Sbjct: 326 KTARENPGPPGV 337


>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 22.6 bits (46), Expect = 1.8
 Identities = 9/12 (75%), Positives = 9/12 (75%)

Query: 14  KTATTNPGPGGV 25
           KTA  NPGP GV
Sbjct: 326 KTARENPGPPGV 337


>AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl
           subunit protein.
          Length = 365

 Score = 22.6 bits (46), Expect = 1.8
 Identities = 9/12 (75%), Positives = 9/12 (75%)

Query: 14  KTATTNPGPGGV 25
           KTA  NPGP GV
Sbjct: 265 KTARENPGPPGV 276


>AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex
           determiner protein.
          Length = 419

 Score = 20.2 bits (40), Expect = 9.7
 Identities = 11/32 (34%), Positives = 14/32 (43%)

Query: 26  RKKSGPKFELTEEQKRDIKEAFDLFDTEKTGK 57
           R   G     T E KRDI    D+    +TG+
Sbjct: 137 RDLPGKSTTTTVEVKRDIINPEDVIPIRRTGE 168


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.313    0.131    0.353 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 33,922
Number of Sequences: 429
Number of extensions: 1145
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of query: 153
length of database: 140,377
effective HSP length: 53
effective length of query: 100
effective length of database: 117,640
effective search space: 11764000
effective search space used: 11764000
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.0 bits)
S2: 40 (20.2 bits)