Silkworm BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001211-TA|BGIBMGA001211-PA|IPR001092|Basic
helix-loop-helix dimerisation region bHLH, IPR011598|Helix-loop-helix
DNA-binding
         (1049 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ457831-1|CAD29886.1|  249|Tribolium castaneum helix-loop-helix...    33   0.008
AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    28   0.29 
U61151-1|AAB41306.1|   45|Tribolium castaneum TATH1 protein.           27   0.67 
AY055847-1|AAL23667.2|  312|Tribolium castaneum cephalothorax pr...    25   2.7  
DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulati...    24   4.7  
AF217810-1|AAF71998.1|  431|Tribolium castaneum fork head orthol...    24   6.2  
DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    23   8.2  

>AJ457831-1|CAD29886.1|  249|Tribolium castaneum helix-loop-helix
           transcription factor protein.
          Length = 249

 Score = 33.5 bits (73), Expect = 0.008
 Identities = 19/69 (27%), Positives = 38/69 (55%), Gaps = 7/69 (10%)

Query: 274 KVKEVKRSAHNAIERRYRTSINDRIVELKNMLV-------GEEAKLNKSAILRKTIEYIK 326
           +V + +RS    +E+R R  IN+ + ELK +++          +KL K+ IL  T+++++
Sbjct: 30  RVSDNRRSNKPIMEKRRRARINNSLNELKTLILDAMKKDPARHSKLEKADILEMTVKHLQ 89

Query: 327 YLRSQNTRL 335
            L+ Q   +
Sbjct: 90  NLQRQQAAM 98


>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like
           protein protein.
          Length = 1156

 Score = 28.3 bits (60), Expect = 0.29
 Identities = 13/28 (46%), Positives = 17/28 (60%)

Query: 195 LQSNIINPKTQTLMYTSTPLQVSSTNQN 222
           +QS IINP+ Q    ++T    SSTN N
Sbjct: 412 MQSQIINPQPQITSPSNTNTSTSSTNSN 439


>U61151-1|AAB41306.1|   45|Tribolium castaneum TATH1 protein.
          Length = 45

 Score = 27.1 bits (57), Expect = 0.67
 Identities = 16/45 (35%), Positives = 25/45 (55%), Gaps = 2/45 (4%)

Query: 282 AHNAIERRYRTSINDRIVELKNML--VGEEAKLNKSAILRKTIEY 324
           A NA ERR   S+ND    L++++  +G + KL+K   L+    Y
Sbjct: 1   AANARERRRMNSLNDAFDRLRDVVPSLGNDRKLSKFETLQMAQTY 45


>AY055847-1|AAL23667.2|  312|Tribolium castaneum cephalothorax
           protein.
          Length = 312

 Score = 25.0 bits (52), Expect = 2.7
 Identities = 18/71 (25%), Positives = 34/71 (47%), Gaps = 4/71 (5%)

Query: 176 PKGVPFILKSSDSNFSPVLLQSNIINPKTQTLMYTSTPLQVSSTNQNIITNAKAGSETTP 235
           P+  P +   S+SN +     S + +P + +      P   S+T+QN+ + A + S T+ 
Sbjct: 123 PRSTPPLSTPSNSNATK---SSGLTSPLSVSTSPPGKPA-TSTTSQNLSSPASSTSSTSS 178

Query: 236 IHTFFTNSNGT 246
                TN+N +
Sbjct: 179 TEKAGTNNNNS 189


>DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulation
           protein.
          Length = 947

 Score = 24.2 bits (50), Expect = 4.7
 Identities = 16/54 (29%), Positives = 29/54 (53%), Gaps = 6/54 (11%)

Query: 6   FLNNCDGDFM--TKLEQELTFVDNTNETGLLDIDTKCKPEISSSPQVSPNYNHT 57
           +LNN +G  +   ++E   T  DNT    L+D+ TK + E+     ++P ++ T
Sbjct: 427 YLNN-EGSLVYNVQIENLKTTPDNTTFITLVDVSTKRRTELE---DLTPTFDFT 476


>AF217810-1|AAF71998.1|  431|Tribolium castaneum fork head
           orthologue protein.
          Length = 431

 Score = 23.8 bits (49), Expect = 6.2
 Identities = 15/63 (23%), Positives = 29/63 (46%)

Query: 182 ILKSSDSNFSPVLLQSNIINPKTQTLMYTSTPLQVSSTNQNIITNAKAGSETTPIHTFFT 241
           +L S+D N      Q N+ + +   ++    PL +SS +Q ++ +           + FT
Sbjct: 305 LLHSNDLNMHQQHHQQNMSHEELSAMVNRCHPLSLSSDHQAMLHHNPMSHHLKQEPSGFT 364

Query: 242 NSN 244
           +SN
Sbjct: 365 SSN 367


>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
           adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 23.4 bits (48), Expect = 8.2
 Identities = 9/28 (32%), Positives = 17/28 (60%)

Query: 288 RRYRTSINDRIVELKNMLVGEEAKLNKS 315
           R+   ++NDR+ ++   L+  EAK+  S
Sbjct: 275 RKQAVTLNDRVKQVAGTLIIREAKVEDS 302


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.319    0.133    0.399 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 240,918
Number of Sequences: 317
Number of extensions: 10409
Number of successful extensions: 22
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 17
Number of HSP's gapped (non-prelim): 9
length of query: 1049
length of database: 114,650
effective HSP length: 64
effective length of query: 985
effective length of database: 94,362
effective search space: 92946570
effective search space used: 92946570
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 48 (23.4 bits)