Silkworm BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001211-TA|BGIBMGA001211-PA|IPR001092|Basic
helix-loop-helix dimerisation region bHLH, IPR011598|Helix-loop-helix
DNA-binding
         (1049 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC354.05c |sre2||membrane-tethered transcription factor |Schiz...    56   2e-08
SPBC19C2.09 |sre1||sterol regulatory element binding protein Sre...    50   1e-06
SPAC3F10.12c |||transcription factor |Schizosaccharomyces pombe|...    48   9e-06
SPAC56F8.16 |esc1||transcription factor Esc1 |Schizosaccharomyce...    37   0.017
SPCC645.05c |myo2|rng5|myosin II heavy chain|Schizosaccharomyces...    31   0.64 
SPAC1F5.06 |||heat shock protein Lhs1 |Schizosaccharomyces pombe...    31   0.84 
SPCC736.11 |ago1|csp9|argonaute|Schizosaccharomyces pombe|chr 3|...    30   1.9  
SPAC19D5.01 |pyp2||tyrosine phosphatase Pyp2|Schizosaccharomyces...    29   2.6  
SPBC32H8.10 |cdk9||cyclin-dependent protein kinase Cdk9 |Schizos...    29   2.6  
SPAC1F8.06 |fta5|sma5|Sim4 and Mal2 associated |Schizosaccharomy...    29   2.6  
SPCC736.14 |dis1||microtubule-associated protein Dis1 |Schizosac...    29   2.6  
SPAC24H6.02c |||TIM23 translocase complex subunit Tim15|Schizosa...    29   3.4  
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce...    29   4.5  
SPBC1604.21c |ptr3|uba1, SPBC211.09|ubiquitin activating enzyme ...    28   5.9  
SPAC688.07c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    28   5.9  
SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces...    28   5.9  
SPAC4F10.13c |mpd2||GYF domain|Schizosaccharomyces pombe|chr 1||...    28   7.8  
SPCC1795.08c |||histone acetyltransferase complex subunit |Schiz...    28   7.8  

>SPBC354.05c |sre2||membrane-tethered transcription factor
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 793

 Score = 56.4 bits (130), Expect = 2e-08
 Identities = 36/85 (42%), Positives = 50/85 (58%), Gaps = 19/85 (22%)

Query: 279 KRSAHNAIERRYRTSINDRIVELK----------NMLVGEEAK---------LNKSAILR 319
           KRSAHN IE+RYR+++ND+I EL+          N    +E K         LNK+ IL 
Sbjct: 427 KRSAHNMIEKRYRSNLNDKIAELRDAVPTLRSGYNSTTADELKGTYVPLSRKLNKATILS 486

Query: 320 KTIEYIKYLRSQNTRLKQENIALKQ 344
           K  EYIK L+S+N +L +EN  L++
Sbjct: 487 KATEYIKSLQSKNKKLIEENKILQK 511


>SPBC19C2.09 |sre1||sterol regulatory element binding protein
           Sre1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 900

 Score = 50.4 bits (115), Expect = 1e-06
 Identities = 39/110 (35%), Positives = 56/110 (50%), Gaps = 28/110 (25%)

Query: 279 KRSAHNAIERRYRTSINDRIVELK---------------NMLVGEE-------AKLNKSA 316
           K++AHN IE+RYRT++NDRI EL+               N L  E+        KLNK  
Sbjct: 261 KKTAHNMIEKRYRTNLNDRICELRDAVPSLRAAAALRCGNSLDDEDLGGLTPARKLNKGT 320

Query: 317 ILRKTIEYIKYLRSQNTRLKQENIALKQVCQKSGVKEPIFEGGYTPPHSD 366
           IL K  EYI++L ++N  L++ N   KQ+  +    E   +    PP +D
Sbjct: 321 ILAKATEYIRHLEAKNKELQKTN---KQLSDRLAFYE---DPSMAPPSND 364


>SPAC3F10.12c |||transcription factor |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 201

 Score = 47.6 bits (108), Expect = 9e-06
 Identities = 24/72 (33%), Positives = 44/72 (61%), Gaps = 2/72 (2%)

Query: 268 PNIGPPKVKEVKRSAHNAIERRYRTSINDRIVELKNMLVGEEAKLNKSAILRKTIEYIKY 327
           P +G  +  + KR +H  +ERR R +I++ I EL N++ G E   NK +IL++T +YI+ 
Sbjct: 78  PCVGSEEWYKAKRLSHKEVERRRREAISEGIKELANIVPGCEK--NKGSILQRTAQYIRS 135

Query: 328 LRSQNTRLKQEN 339
           L+      ++++
Sbjct: 136 LKEMEEMCREKS 147


>SPAC56F8.16 |esc1||transcription factor Esc1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 413

 Score = 36.7 bits (81), Expect = 0.017
 Identities = 22/80 (27%), Positives = 42/80 (52%), Gaps = 1/80 (1%)

Query: 271 GPPKVKEVKRSAHNAIERRYRTSINDRIVELKNML-VGEEAKLNKSAILRKTIEYIKYLR 329
           GP       R++H   ER+ R  I +   +LK+ L + +  K +K  +L + I+YI+ L+
Sbjct: 327 GPYTRNPELRTSHKLAERKRRKEIKELFDDLKDALPLDKSTKSSKWGLLTRAIQYIEQLK 386

Query: 330 SQNTRLKQENIALKQVCQKS 349
           S+   L+    +L++  Q +
Sbjct: 387 SEQVALEAYVKSLEENMQSN 406


>SPCC645.05c |myo2|rng5|myosin II heavy chain|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1526

 Score = 31.5 bits (68), Expect = 0.64
 Identities = 23/78 (29%), Positives = 42/78 (53%), Gaps = 9/78 (11%)

Query: 277 EVKRSAHNAIE-RRYRTSINDRIVELKNMLVGEEA-KLNKSAILRKTIEYIKYL------ 328
           E+K+  ++  E  R     N+ +  ++N+L  E A  L+K  ILR+T E +  +      
Sbjct: 839 ELKKQQNSKSEVERDLVETNNSLTAVENLLTTERAIALDKEEILRRTQERLANIEDSFSE 898

Query: 329 -RSQNTRLKQENIALKQV 345
            + QN  L++E+ +LKQ+
Sbjct: 899 TKQQNENLQRESASLKQI 916


>SPAC1F5.06 |||heat shock protein Lhs1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 848

 Score = 31.1 bits (67), Expect = 0.84
 Identities = 24/98 (24%), Positives = 44/98 (44%), Gaps = 2/98 (2%)

Query: 74  PISKTIQGGYIKEEKFNLPTSLENASVTFPEVIPQQRTQ-VQNQPMIFQQVVQSPVFVNL 132
           P  ++    Y+  +K +   + + ASV          T+  + +P+I Q ++  P  ++L
Sbjct: 378 PFIQSTLADYVSSDKISKNVNADEASVKGAAFYGASLTKSFRVKPLIVQDIINYPYLLSL 437

Query: 133 GPAGNIQPMPDKRSNVIQVDNVPQVNKTSPLKQQSQPL 170
           G +  I  +PD     +Q  NV   N ++  K  S PL
Sbjct: 438 GTSEYIVALPDSTPYGMQ-HNVTIHNVSTIGKHPSFPL 474


>SPCC736.11 |ago1|csp9|argonaute|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 834

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 28/85 (32%), Positives = 42/85 (49%), Gaps = 11/85 (12%)

Query: 173 QNNPKGVPF-ILKSSDSNFSPVLLQSNIINPKTQTLMYTSTPLQVSSTNQNIITNAKAGS 231
           +++P+ + F I KSS  N   +   S  +N K     Y+S P  +SS     +   K  S
Sbjct: 103 ESHPREIEFSIQKSSKINLHTL---SQFVNSK-----YSSDPQVLSSIMFLDLLLKKKPS 154

Query: 232 ETTP--IHTFFTNSNGTTLLTGIPA 254
           ET    +H+FFT  NG +L  G+ A
Sbjct: 155 ETLFGFMHSFFTGENGVSLGGGVEA 179


>SPAC19D5.01 |pyp2||tyrosine phosphatase Pyp2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 711

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 21/76 (27%), Positives = 33/76 (43%), Gaps = 3/76 (3%)

Query: 127 PVFVNLGPAGNIQPMPDKRSNVIQVDNVPQVNKTSPLKQQSQPLLIQNNPKGVPFILKSS 186
           P+   +  A +    PD++ N   V N PQ     P   +S P    +N +  P    S 
Sbjct: 248 PISPAISCASSCPSTPDEQKNFFIVGNAPQQTPARP-SLRSVPSYPSSNNQRRP--SASR 304

Query: 187 DSNFSPVLLQSNIINP 202
             +FS  +  SN++NP
Sbjct: 305 VRSFSNYVKSSNVVNP 320


>SPBC32H8.10 |cdk9||cyclin-dependent protein kinase Cdk9
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 591

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 23/81 (28%), Positives = 40/81 (49%), Gaps = 5/81 (6%)

Query: 303 NMLVGEEAKLNKSAILRKTIEYIKYLRSQNTRLKQENIALKQVCQKSGVKEPIFEGGYTP 362
           N  V   ++ +++A   KT   IKY+ S    + + +IA +   QK+  + P     +  
Sbjct: 514 NSKVQTTSRASENADTNKTQHNIKYIDSY---VPEYSIARQSANQKTNEQHPSSTSLHQQ 570

Query: 363 PHSDVSSP-YHSPHSIDSDTP 382
             SD+ SP +H   ++D DTP
Sbjct: 571 STSDLKSPSFHENSNVD-DTP 590


>SPAC1F8.06 |fta5|sma5|Sim4 and Mal2 associated |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 385

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 16/69 (23%), Positives = 35/69 (50%), Gaps = 3/69 (4%)

Query: 185 SSDSNFSPVLLQSNIINPKTQTLMYTSTPLQVSS-TNQNIITNAKAGS--ETTPIHTFFT 241
           S+ S +S   +    ++     +  +S  +  SS T  N+I ++   S   +TP+ T ++
Sbjct: 85  STSSEYSSSSIPITTVSSSDSFIPSSSQTISASSSTTDNVIVSSSISSTVSSTPVSTIYS 144

Query: 242 NSNGTTLLT 250
            ++GTT ++
Sbjct: 145 GTSGTTFVS 153


>SPCC736.14 |dis1||microtubule-associated protein Dis1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 882

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 27/133 (20%), Positives = 59/133 (44%), Gaps = 10/133 (7%)

Query: 112 QVQNQPMIFQQVV-----QSPVFVNLGPAGNIQPMPDKRSNVIQVDNVPQVNKTSPLK-- 164
           Q+ +QP++ + +V     + P  + L     +   P++ S   ++  V    KTSP+K  
Sbjct: 503 QIFSQPVLSKYIVGLDPKKLPKILELSKDITVNAHPNQPSRP-RLPRVASPLKTSPVKLA 561

Query: 165 --QQSQPLLIQNNPKGVPFILKSSDSNFSPVLLQSNIINPKTQTLMYTSTPLQVSSTNQN 222
              Q+   L  +NP       +S  +  SP    +  +  ++    + S+ L+  S++  
Sbjct: 562 VTPQAPSPLPSSNPSQASLTEESLSTRSSPTKPSTTSLRSQSLVNRFASSTLKAPSSSSK 621

Query: 223 IITNAKAGSETTP 235
            ++NA +  ++ P
Sbjct: 622 GVSNAASSKQSFP 634


>SPAC24H6.02c |||TIM23 translocase complex subunit
           Tim15|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 175

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 15/51 (29%), Positives = 25/51 (49%)

Query: 240 FTNSNGTTLLTGIPAVVLEGDKIALNPAPNIGPPKVKEVKRSAHNAIERRY 290
           FT S+   L +G+P+V  + D++   P  N+         RS HN  ++ Y
Sbjct: 48  FTQSDAKDLASGVPSVKSDADQLQPKPTYNVSFTCTVCNTRSNHNFSKQAY 98


>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1957

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 18/54 (33%), Positives = 31/54 (57%), Gaps = 2/54 (3%)

Query: 291 RTSINDRIVELKNMLVGEEAKLNKSAILRKTIEYIKYLRSQNTRLKQENIALKQ 344
           R S  D +   ++ L  +  KL K  +LR TI  +K  R+ N++L++E + LK+
Sbjct: 327 RISEFDNLKSERDTLSIKNEKLEK--LLRNTIGSLKDSRTSNSQLEEEMVELKE 378


>SPBC1604.21c |ptr3|uba1, SPBC211.09|ubiquitin activating enzyme
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1012

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 17/52 (32%), Positives = 24/52 (46%), Gaps = 1/52 (1%)

Query: 700  YDSDHPPAKLFSRLPDPADPLAYAMRAYHLEILQRSLQMLLCADERTNTRDV 751
            Y +  PP KL  RLP     L   +    LE  ++ L + +C D+  N  DV
Sbjct: 953  YANFQPPKKLAERLPLKISELVEQITKKKLEPFRKHLVLEICCDD-ANGEDV 1003


>SPAC688.07c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1038

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 59/266 (22%), Positives = 100/266 (37%), Gaps = 28/266 (10%)

Query: 2   EGRDFLNNCDGDFMTKLEQELTFVDNTNETGLLDIDTKCKPE--ISSSPQVSP----NYN 55
           E  +  NN   D ++    +   +DNT+E   L+  +K   E  I  S  V      + N
Sbjct: 338 EAVEIANNVKEDIVSTANDDANELDNTSEKATLETSSKPVTEQAIEQSEVVQEVEEGDTN 397

Query: 56  HTGNPVMSQHTHRIRPTPPISKTIQGGYIKEEKF-NLPTSLENASVTFPEVIPQQRTQVQ 114
            T N ++      I      S T        EKF  +P+  E  S T  +   +Q    +
Sbjct: 398 MTTNTILKPTDEIINKGYAYSITSSHSNHSNEKFEQIPSPDEKLSRTDIDTHVKQLQTTK 457

Query: 115 NQPMIFQQVVQSP-------VFVNLGPAGNIQPMPDKRSNVIQVDNVPQVNKT------S 161
           +   +    V+SP       +  +L     I    +K  N+ + ++ P +         S
Sbjct: 458 STDSLSIPFVESPQQNPEEELSDSLSNDFGIDAEKEKDENLSKPEHHPSITSVNSPFLYS 517

Query: 162 PLKQQSQPLLIQNNPKGVPFILKSSDSNFSPV----LLQSNIINPKTQTLMYTSTPLQVS 217
           P KQ S  L    + + +   L+ SD +        L Q+N  N + +T+    +  Q  
Sbjct: 518 PSKQPSGEL----DEENLKLRLQDSDVDDEVATIRSLKQNNATNSEVETVTNDPSFSQQP 573

Query: 218 STNQNIITNAKAGSETTPIHTFFTNS 243
            T+  I+ N  A S    I   F++S
Sbjct: 574 GTHSRILRNFDAISSIDSIPDSFSDS 599


>SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 3131

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 19/61 (31%), Positives = 28/61 (45%), Gaps = 5/61 (8%)

Query: 834 YSLAQCRDERS---VERTSETILKVCDLAGARLADSLAYYCCRKP--TQLMMLMQVLCCD 888
           +S+  C +E +   VE  S+TI K+C L G  +       C  K    +LM   Q L  D
Sbjct: 181 FSIESCNEEWTSTFVETESQTIYKLCSLRGFGIYSDETAECIDKTDINELMNTFQALITD 240

Query: 889 W 889
           +
Sbjct: 241 F 241


>SPAC4F10.13c |mpd2||GYF domain|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 992

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 45/223 (20%), Positives = 86/223 (38%), Gaps = 18/223 (8%)

Query: 45  SSSPQVSPNYNHTGNPVMSQHTHRIRPTPPISKTIQGGYIKEEKFNLPTSLENASVTFPE 104
           ++SP++   +NH   PV+ +           S++   G +      L       S TFP+
Sbjct: 173 TASPKLGSPFNHINRPVLDRSPSSFSQ----SRSAVSGNMNPGVGTLQQPQRAGSDTFPD 228

Query: 105 VIPQQRTQVQNQPMIFQ------QVVQSPVFVNLGPAGNIQP--MPDKRSNVIQVDNVPQ 156
           +      Q   +P +        +++ S  +   G +  I         S V QVDN+  
Sbjct: 229 LNTSSSNQPGGEPNVASANTHSLEILSSSAYHPSGSSNGISAGLTQSVASPVGQVDNLAD 288

Query: 157 VNKTSPLKQQSQPLLIQNN-PKGVPFILKSSDSNFSPVLLQSNIINPKTQTLMYTSTPLQ 215
            ++ SPL++        +N P G    ++ +D   SP+ +  +    K       S P+ 
Sbjct: 289 FSQ-SPLRRGPSRFPTNSNVPVGNSMSIRDTD---SPLNILVDKAKAKASIKENASQPVA 344

Query: 216 VS-STNQNIITNAKAGSETTPIHTFFTNSNGTTLLTGIPAVVL 257
            S S  ++   N+ A + +     F + +    L + IP  +L
Sbjct: 345 PSASQREHSAVNSPAAAMSPSTAMFSSEAFPQHLASLIPPALL 387


>SPCC1795.08c |||histone acetyltransferase complex subunit
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 985

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 20/68 (29%), Positives = 29/68 (42%), Gaps = 2/68 (2%)

Query: 45  SSSPQVSPNYNHTGNPVMSQHTHRIRPTPPISKTIQGGYIKEEKFNLPTSLENASVTFPE 104
           S SP  SP   H    V  + T  I PT P+ +     + +EEK  L    E A+    E
Sbjct: 140 SKSPIPSPETIHKNIDVEEKET--IEPTTPVKEVETTAHAEEEKGPLTPDSEYAARQLTE 197

Query: 105 VIPQQRTQ 112
            +  + +Q
Sbjct: 198 ELANKSSQ 205


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.319    0.133    0.399 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,696,418
Number of Sequences: 5004
Number of extensions: 199421
Number of successful extensions: 608
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 600
Number of HSP's gapped (non-prelim): 25
length of query: 1049
length of database: 2,362,478
effective HSP length: 80
effective length of query: 969
effective length of database: 1,962,158
effective search space: 1901331102
effective search space used: 1901331102
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 59 (27.9 bits)