BLASTP 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= BGIBMGA001211-TA|BGIBMGA001211-PA|IPR001092|Basic helix-loop-helix dimerisation region bHLH, IPR011598|Helix-loop-helix DNA-binding (1049 letters) Database: mosquito 2123 sequences; 516,269 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value AJ535208-1|CAD59408.1| 1133|Anopheles gambiae SMC6 protein protein. 33 0.052 AY785360-1|AAV52864.1| 759|Anopheles gambiae male-specific tran... 29 0.84 AF119382-1|AAD27585.1| 394|Anopheles gambiae caudal protein hom... 25 7.8 >AJ535208-1|CAD59408.1| 1133|Anopheles gambiae SMC6 protein protein. Length = 1133 Score = 32.7 bits (71), Expect = 0.052 Identities = 25/93 (26%), Positives = 49/93 (52%), Gaps = 3/93 (3%) Query: 255 VVLEGDKIALNPAPNIGPPKVK-EVKRSAHNAIERRYR-TSINDRIVELKNMLVGEEAKL 312 VVLE + L A +G + + K + N I++ + +++D + +L+ + +E ++ Sbjct: 290 VVLEEKQSNLESAGRMGELLSELQAKLAWRNVIDQEEQLAAVDDELKKLRTSIEEQEHRI 349 Query: 313 -NKSAILRKTIEYIKYLRSQNTRLKQENIALKQ 344 N+ A++ KT I R+ KQE +ALK+ Sbjct: 350 RNREALVAKTDSTIDTYRADIESKKQEYVALKE 382 >AY785360-1|AAV52864.1| 759|Anopheles gambiae male-specific transcription factor FRU-MB protein. Length = 759 Score = 28.7 bits (61), Expect = 0.84 Identities = 18/43 (41%), Positives = 23/43 (53%), Gaps = 2/43 (4%) Query: 980 ALEGGGGDGERAVALYMAGKHLPA--AVLAAPGERAGMLAQAA 1020 +L GGGG G + M G H A A +AA G AGM++ A Sbjct: 675 SLGGGGGSGRSSSGGGMIGMHSVAAGAAVAAGGGVAGMMSTGA 717 >AF119382-1|AAD27585.1| 394|Anopheles gambiae caudal protein homolog protein. Length = 394 Score = 25.4 bits (53), Expect = 7.8 Identities = 13/46 (28%), Positives = 25/46 (54%), Gaps = 2/46 (4%) Query: 35 DIDTKCKPEISSSPQVSPNYNHTGNPV--MSQHTHRIRPTPPISKT 78 D+ + P SSSPQ++P +P M + +++ +P P ++T Sbjct: 169 DMSSPGAPTGSSSPQITPRPTPVKSPYEWMKKQSYQSQPNPGKTRT 214 Database: mosquito Posted date: Oct 5, 2007 11:13 AM Number of letters in database: 516,269 Number of sequences in database: 2123 Lambda K H 0.319 0.133 0.399 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 1,070,473 Number of Sequences: 2123 Number of extensions: 43921 Number of successful extensions: 94 Number of sequences better than 10.0: 3 Number of HSP's better than 10.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 3 Number of HSP's that attempted gapping in prelim test: 93 Number of HSP's gapped (non-prelim): 4 length of query: 1049 length of database: 516,269 effective HSP length: 71 effective length of query: 978 effective length of database: 365,536 effective search space: 357494208 effective search space used: 357494208 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.8 bits) S2: 53 (25.4 bits)
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